TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD430969.1|CD430969 ETH1_6_D05.b1_A002 Ethylene-treated ... 298 3e-086
gb|BE360608.1|BE360608 DG1_64_B12.g1_A002 Dark Grown 1 (DG1... 268 1e-074
gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (L... 146 3e-034
gb|CW261205.1|CW261205 104_728_11229383_116_35174_092 Sorgh... 113 1e-028
gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (L... 124 1e-027
>gb|CD430969.1|CD430969 ETH1_6_D05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_D05_A002 3', mRNA sequence
Length = 748
Score = 298 bits (646), Expect(3) = 3e-086
Identities = 128/150 (85%), Positives = 132/150 (88%)
Frame = -2 / -3
Query: 451 TKPVL*LLYHRHSFFKGQNCFGFYXXXXXSGGNVGLFEHTVVLWSCFILSATLQVPEHFL 272
T PV L +HRH+ KG+NCFGFY SGGNVGLFEHTVVLWSCFILSA LQVPEHFL
Sbjct: 482 TNPVHQLEHHRHNPLKGKNCFGFYSSSSTSGGNVGLFEHTVVLWSCFILSAMLQVPEHFL 303
Query: 271 LSHTAMEVGVHTESHIARLSSCFTFIASIHAPIVTSS*SNILKLSLFAVARASTTSEERA 92
LSHTAMEVGVH ESHIA LSSCFTFIASIHAP VTSS*SNILKLSLF VARASTTSEERA
Sbjct: 302 LSHTAMEVGVHIESHIALLSSCFTFIASIHAPTVTSS*SNILKLSLFVVARASTTSEERA 123
Query: 91 YSEPDACMKYSLPNSSQELSYHFKFGSLTT 2
YSEP+ACMKYSLP SSQELSYHF FGSLTT
Sbjct: 122 YSEPEACMKYSLPKSSQELSYHFIFGSLTT 33
Score = 287 bits (622), Expect(3) = 1e-081
Identities = 113/118 (95%), Positives = 117/118 (99%)
Frame = +3 / +1
Query: 3 VVNDPNLKWYESSWELLGNEYFMHASGSLYALSSEVVEALATAKSDSLRMFDYEDVTIGA 182
VVNDPN+KWYESSWELLGNEYFMHASGSLYALSSEVVEALAT KSDSLRMFDYEDVT+GA
Sbjct: 34 VVNDPNMKWYESSWELLGNEYFMHASGSLYALSSEVVEALATTKSDSLRMFDYEDVTVGA 213
Query: 183 WMLAMNVKHEDNRAMCDSVCTPTSIAVWDSKKCSGTCNVADKIKQLHNTTVCSKSPTL 356
WMLAMNVKHEDNRAMCDS+CTPTSIAVWDSKKCSGTCN+ADKIKQLHNTTVCSKSPTL
Sbjct: 214 WMLAMNVKHEDNRAMCDSICTPTSIAVWDSKKCSGTCNIADKIKQLHNTTVCSKSPTL 387
Score = 281 bits (609), Expect(4) = 3e-079
Identities = 123/141 (87%), Positives = 125/141 (88%)
Frame = -3 / -1
Query: 423 TAIAFSRAKTVSVSILPPPPQVATLGSLSTQWCYGAALFCQRRYKYLSISYCPIQRWR*G 244
T I RAK V VSILPPPPQVATLGSLSTQWCYGAALFCQ YKYL+ISYCPIQ+WR*
Sbjct: 454 TVITL*RAKIVLVSILPPPPQVATLGSLSTQWCYGAALFCQLCYKYLNISYCPIQQWR*E 275
Query: 243 YILNHTLLGCLHALHS*QASMRRL*HLHNQTSLSYHSLQ*LELQPPQKKEHIVNQMHA*S 64
ILNHTLL CLHALHS*QASMRRL*HL NQTSLSYHSL *LELQPPQKKEHIVNQ HA*S
Sbjct: 274 CILNHTLLCCLHALHS*QASMRRL*HLRNQTSLSYHSL**LELQPPQKKEHIVNQKHA*S 95
Query: 63 TRYPTVPKNFRTISNLDH*QL 1
TRYP VPKNFRTIS LDH*QL
Sbjct: 94 TRYPKVPKNFRTISYLDH*QL 32
Score = 276 bits (598), Expect = 2e-073
Identities = 121/150 (80%), Positives = 126/150 (84%)
Frame = -1 / -2
Query: 452 DKTSALIVVSPP*LFQGPKXXXXXXXXXXXRWQRWAL*AHSGVMELLYFVSDVTST*AFL 273
DK+SA I P * F+G K RWQRWAL*AHSGVMELLYFVS VTST* FL
Sbjct: 483 DKSSAPIGAPPS*PFEGQKLFWFLFFLLHLRWQRWAL*AHSGVMELLYFVSYVTST*TFL 304
Query: 272 TVPYSDGGRGTY*ITHCSVVFMLYIHSKHPCADCNIFIIKHP*AITLCSS*SFNHLRRKS 93
TVPYS+GGR Y*ITHCSVVFMLYIHSKHPCADCNIF+IKHP*AITLCSS*SFNHLRRKS
Sbjct: 303 TVPYSNGGRSAY*ITHCSVVFMLYIHSKHPCADCNIFVIKHP*AITLCSS*SFNHLRRKS 124
Query: 92 I**TRCMHEVLVTQQFPRTFVPFQIWIIDN 3
I**TR MHEVLVTQ+FPRTFVPF IWIIDN
Sbjct: 123 I**TRSMHEVLVTQKFPRTFVPFHIWIIDN 34
Score = 274 bits (593), Expect = 1e-072
Identities = 124/183 (67%), Positives = 135/183 (73%)
Frame = +2 / +3
Query: 2 SCQ*SKFEMVRKFLGTVG*RVLHACIWFTICXXXXXXXXXXYCKE**LKDV*L*RCYNRR 181
SCQ*SK+EMVRKFLGT G*RVLHAC WFTIC Y KE**LKDV*L RCY+RR
Sbjct: 33 SCQ*SKYEMVRKFLGTFG*RVLHACFWFTICSFF*GG*SSSYYKE**LKDV*LRRCYSRR 212
Query: 182 MDACYECKA*RQPSNV*FSMYPYLHRCMGQ*EMLRYL*RR*QNKAAP*HHCVLKEPNVAT 361
MDACYECKA*RQ SNV*F+M+ YLH CMGQ*EM RYL* *QNKAAP*HHCVLKEPNVAT
Sbjct: 213 MDACYECKA*RQQSNV*FNMHSYLHCCMGQ*EMFRYL*HS*QNKAAP*HHCVLKEPNVAT 392
Query: 362 XXXXXRIETETVLALEKAMAVIQQLEHWFCRRRHFHTAVSLVTFQHQRWRVLGESTPSHY 541
RIET+T+ AL++ M V+ QL HW C+ SL FQ + RV GES PSH
Sbjct: 393 *GGGGRIETKTIFALQRVMTVVLQLVHWICQLIFILLYGSLALFQQRHSRVRGESMPSHD 572
Query: 542 M*Y 550
*Y
Sbjct: 573 A*Y 581
Score = 179 bits (386), Expect(3) = 8e-062
Identities = 80/109 (73%), Positives = 83/109 (76%)
Frame = +1 / +2
Query: 130 QRVIA*GCLIMKMLQSAHGCLL*M*SMKTTEQCVIQYVPLPPSLYGTVRNAQXXXXXXXX 309
QRVIA*GCLI KMLQSAHGCLL*M*SMKTTEQCVIQY LPP LYGTVRN Q
Sbjct: 161 QRVIA*GCLITKMLQSAHGCLL*M*SMKTTEQCVIQYALLPPLLYGTVRNVQVLVT*LTK 340
Query: 310 XXXXITPLCAQRAQRCHLRWRRKNRNRNSFGP*KSYGGDTTIRALVLSS 456
ITPLCAQRAQRCHLRWRRKNRN+N+F P K Y G I AL LS+
Sbjct: 341 *SSSITPLCAQRAQRCHLRWRRKNRNQNNFCPSKGYDGGAPIGALDLST 487
Score = 68.9 bits (144), Expect(3) = 8e-062
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +1 / +2
Query: 1 QLSMIQI*NGTKVLGNCWVTSTSCMHLVHYM 93
QLSMIQI*NGTKVLGN WVTSTSCM LVHYM
Sbjct: 32 QLSMIQI*NGTKVLGNFWVTSTSCMLLVHYM 124
Score = 34.5 bits (69), Expect(3) = 3e-086
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3 / -1
Query: 576 LNPYWVDSKYYM*CDGVDSPRTL 508
+N V ++YY CDG+DSPRTL
Sbjct: 607 VNKVTV*TQYYASCDGIDSPRTL 539
Score = 34.1 bits (68), Expect(3) = 1e-081
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3 / +1
Query: 495 NTSDGEFLENRHHHITCSISSLP 563
N+ EF+ENR HH+T SI S+P
Sbjct: 526 NSGTVEFVENRCHHMTHSIESIP 594
Score = 29.0 bits (57), Expect(3) = 8e-062
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1 / +2
Query: 496 TPAMESSWRIDTITLHVVFRVY 561
T A SSWRID IT +V +Y
Sbjct: 527 TAAQ*SSWRIDAIT*RIVLSLY 592
Score = 26.3 bits (51), Expect(3) = 3e-086
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 688 KPHRSLCVQFI 656
+PHRSLCVQ I
Sbjct: 747 RPHRSLCVQHI 715
Score = 25.4 bits (49), Expect(3) = 1e-081
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +2
Query: 657 INCTQSDLCG 686
I CTQSDLCG
Sbjct: 716 ICCTQSDLCG 745
Score = 25.4 bits (49), Expect(4) = 3e-079
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 687 NHIGHSVYNLY 655
+ IGHSVYN+Y
Sbjct: 746 DRIGHSVYNIY 714
Score = 24.4 bits (47), Expect(4) = 3e-079
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2 / -3
Query: 550 ILHVM*WCRFSKNS 509
IL VM*W RFS NS
Sbjct: 581 ILCVM*WHRFSTNS 540
Score = 23.1 bits (44), Expect(4) = 3e-079
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / -1
Query: 592 KYNTSSEPILGRL 554
+Y TSSEP +GRL
Sbjct: 658 RYITSSEPHVGRL 620
>gb|BE360608.1|BE360608 DG1_64_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 515
Score = 268 bits (580), Expect(2) = 1e-074
Identities = 115/136 (84%), Positives = 119/136 (87%)
Frame = -2 / -3
Query: 451 TKPVL*LLYHRHSFFKGQNCFGFYXXXXXSGGNVGLFEHTVVLWSCFILSATLQVPEHFL 272
T PV L +HRH+ KG+NCFGFY SGGNVGLFEHTVVLWSCFILSA LQVPEHFL
Sbjct: 408 TNPVHQLEHHRHNPLKGKNCFGFYSSSSTSGGNVGLFEHTVVLWSCFILSAMLQVPEHFL 229
Query: 271 LSHTAMEVGVHTESHIARLSSCFTFIASIHAPIVTSS*SNILKLSLFAVARASTTSEERA 92
LSHTAMEVGVH ESHIA LSSCFTFIASIHAP VTSS*SNILKLSLF VARASTTSEERA
Sbjct: 228 LSHTAMEVGVHIESHIALLSSCFTFIASIHAPTVTSS*SNILKLSLFVVARASTTSEERA 49
Query: 91 YSEPDACMKYSLPNSS 44
YSEP+ACMKYSLP SS
Sbjct: 48 YSEPEACMKYSLPKSS 1
Score = 250 bits (541), Expect(2) = 1e-066
Identities = 109/126 (86%), Positives = 111/126 (88%)
Frame = -3 / -1
Query: 423 TAIAFSRAKTVSVSILPPPPQVATLGSLSTQWCYGAALFCQRRYKYLSISYCPIQRWR*G 244
T I RAK V VSILPPPPQVATLGSLSTQWCYGAALFCQ YKYL+ISYCPIQ+WR*
Sbjct: 380 TVITL*RAKIVLVSILPPPPQVATLGSLSTQWCYGAALFCQLCYKYLNISYCPIQQWR*E 201
Query: 243 YILNHTLLGCLHALHS*QASMRRL*HLHNQTSLSYHSLQ*LELQPPQKKEHIVNQMHA*S 64
ILNHTLL CLHALHS*QASMRRL*HL NQTSLSYHSL *LELQPPQKKEHIVNQ HA*S
Sbjct: 200 CILNHTLLCCLHALHS*QASMRRL*HLRNQTSLSYHSL**LELQPPQKKEHIVNQKHA*S 21
Query: 63 TRYPTV 46
TRYP V
Sbjct: 20 TRYPKV 3
Score = 250 bits (540), Expect(2) = 3e-067
Identities = 100/104 (96%), Positives = 103/104 (99%)
Frame = +3 / +2
Query: 45 ELLGNEYFMHASGSLYALSSEVVEALATAKSDSLRMFDYEDVTIGAWMLAMNVKHEDNRA 224
ELLGNEYFMHASGSLYALSSEVVEALAT KSDSLRMFDYEDVT+GAWMLAMNVKHEDNRA
Sbjct: 2 ELLGNEYFMHASGSLYALSSEVVEALATTKSDSLRMFDYEDVTVGAWMLAMNVKHEDNRA 181
Query: 225 MCDSVCTPTSIAVWDSKKCSGTCNVADKIKQLHNTTVCSKSPTL 356
MCDS+CTPTSIAVWDSKKCSGTCN+ADKIKQLHNTTVCSKSPTL
Sbjct: 182 MCDSICTPTSIAVWDSKKCSGTCNIADKIKQLHNTTVCSKSPTL 313
Score = 244 bits (528), Expect = 9e-064
Identities = 111/169 (65%), Positives = 121/169 (71%)
Frame = +2 / +1
Query: 44 GTVG*RVLHACIWFTICXXXXXXXXXXYCKE**LKDV*L*RCYNRRMDACYECKA*RQPS 223
GT G*RVLHAC WFTIC Y KE**LKDV*L RCY+RRMDACYECKA*RQ S
Sbjct: 1 GTFG*RVLHACFWFTICSFF*GG*SSSYYKE**LKDV*LRRCYSRRMDACYECKA*RQQS 180
Query: 224 NV*FSMYPYLHRCMGQ*EMLRYL*RR*QNKAAP*HHCVLKEPNVATXXXXXRIETETVLA 403
NV*F+M+ YLH CMGQ*EM RYL* *QNKAAP*HHCVLKEPNVAT RIET+T+ A
Sbjct: 181 NV*FNMHSYLHCCMGQ*EMFRYL*HS*QNKAAP*HHCVLKEPNVAT*GGGGRIETKTIFA 360
Query: 404 LEKAMAVIQQLEHWFCRRRHFHTAVSLVTFQHQRWRVLGESTPSHYM*Y 550
L++ M V+ QL HW C+ SL FQ + RV GES PSH *Y
Sbjct: 361 LQRVMTVVLQLVHWICQLIFILLYGSLALFQQRHSRVRGESMPSHDA*Y 507
Score = 242 bits (523), Expect = 4e-063
Identities = 108/136 (79%), Positives = 113/136 (83%)
Frame = -1 / -2
Query: 452 DKTSALIVVSPP*LFQGPKXXXXXXXXXXXRWQRWAL*AHSGVMELLYFVSDVTST*AFL 273
DK+SA I P * F+G K RWQRWAL*AHSGVMELLYFVS VTST* FL
Sbjct: 409 DKSSAPIGAPPS*PFEGQKLFWFLFFLLHLRWQRWAL*AHSGVMELLYFVSYVTST*TFL 230
Query: 272 TVPYSDGGRGTY*ITHCSVVFMLYIHSKHPCADCNIFIIKHP*AITLCSS*SFNHLRRKS 93
TVPYS+GGR Y*ITHCSVVFMLYIHSKHPCADCNIF+IKHP*AITLCSS*SFNHLRRKS
Sbjct: 229 TVPYSNGGRSAY*ITHCSVVFMLYIHSKHPCADCNIFVIKHP*AITLCSS*SFNHLRRKS 50
Query: 92 I**TRCMHEVLVTQQF 45
I**TR MHEVLVTQ+F
Sbjct: 49 I**TRSMHEVLVTQKF 2
Score = 179 bits (386), Expect(3) = 7e-052
Identities = 80/109 (73%), Positives = 83/109 (76%)
Frame = +1 / +3
Query: 130 QRVIA*GCLIMKMLQSAHGCLL*M*SMKTTEQCVIQYVPLPPSLYGTVRNAQXXXXXXXX 309
QRVIA*GCLI KMLQSAHGCLL*M*SMKTTEQCVIQY LPP LYGTVRN Q
Sbjct: 87 QRVIA*GCLITKMLQSAHGCLL*M*SMKTTEQCVIQYALLPPLLYGTVRNVQVLVT*LTK 266
Query: 310 XXXXITPLCAQRAQRCHLRWRRKNRNRNSFGP*KSYGGDTTIRALVLSS 456
ITPLCAQRAQRCHLRWRRKNRN+N+F P K Y G I AL LS+
Sbjct: 267 *SSSITPLCAQRAQRCHLRWRRKNRNQNNFCPSKGYDGGAPIGALDLST 413
Score = 37.7 bits (76), Expect(3) = 7e-052
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1 / +3
Query: 46 NCWVTSTSCMHLVHYM 93
N WVTSTSCM LVHYM
Sbjct: 3 NFWVTSTSCMLLVHYM 50
Score = 33.1 bits (66), Expect(2) = 1e-074
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -3 / -1
Query: 555 SKYYM*CDGVDSPRTL 508
++YY CDG+DSPRTL
Sbjct: 512 TQYYASCDGIDSPRTL 465
Score = 28.1 bits (55), Expect(2) = 3e-067
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / +2
Query: 495 NTSDGEFLENRHHHITCSI 551
N+ EF+ENR HH+T SI
Sbjct: 452 NSGTVEFVENRCHHMTHSI 508
Score = 26.7 bits (52), Expect(3) = 7e-052
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1 / +3
Query: 496 TPAMESSWRIDTITLHVVFRV 558
T A SSWRID IT +V +
Sbjct: 453 TAAQ*SSWRIDAIT*RIVLSI 515
Score = 24.4 bits (47), Expect(2) = 1e-066
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2 / -3
Query: 550 ILHVM*WCRFSKNS 509
IL VM*W RFS NS
Sbjct: 507 ILCVM*WHRFSTNS 466
>gb|AW286139.2|AW286139 LG1_261_H08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 146 bits (314), Expect = 3e-034
Identities = 56/95 (58%), Positives = 72/95 (75%)
Frame = +3 / +1
Query: 3 VVNDPNLKWYESSWELLGNEYFMHASGSLYALSSEVVEALATAKSDSLRMFDYEDVTIGA 182
V DP LKWYE LLG+EYF+HA G +YALS++VV +L +++S RMF EDVTIG+
Sbjct: 166 VFTDPKLKWYEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFSNEDVTIGS 345
Query: 183 WMLAMNVKHEDNRAMCDSVCTPTSIAVWDSKKCSG 287
WMLAMNV HE+ A+C++ CT +S+AVWD KCSG
Sbjct: 346 WMLAMNVNHENTHALCEADCTESSVAVWDIPKCSG 450
>gb|CW261205.1|CW261205 104_728_11229383_116_35174_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229383, DNA
sequence
Length = 551
Score = 113 bits (241), Expect(2) = 3e-026
Identities = 52/89 (58%), Positives = 59/89 (66%)
Frame = +2 / +1
Query: 284 RYL*RR*QNKAAP*HHCVLKEPNVATXXXXXRIETETVLALEKAMAVIQQLEHWFCRRRH 463
RYL* *QNKAAP*HHCVLKEPNVAT RIET+T+ AL++ M V+ QL HW C+
Sbjct: 19 RYL*HS*QNKAAP*HHCVLKEPNVAT*GGGGRIETKTIFALQRVMTVVLQLVHWICQLIF 198
Query: 464 FHTAVSLVTFQHQRWRVLGESTPSHYM*Y 550
SL FQ + RV GES PSH *Y
Sbjct: 199 ILLYGSLALFQQRHSRVRGESMPSHDA*Y 285
Score = 101 bits (215), Expect(3) = 1e-028
Identities = 41/56 (73%), Positives = 44/56 (78%)
Frame = -2 / -3
Query: 451 TKPVL*LLYHRHSFFKGQNCFGFYXXXXXSGGNVGLFEHTVVLWSCFILSATLQVP 284
T PV L +HRH+ KG+NCFGFY SGGNVGLFEHTVVLWSCFILSA LQVP
Sbjct: 186 TNPVHQLEHHRHNPLKGKNCFGFYSSSSTSGGNVGLFEHTVVLWSCFILSAMLQVP 19
Score = 93.2 bits (197), Expect(3) = 4e-021
Identities = 39/47 (82%), Positives = 39/47 (82%)
Frame = -3 / -1
Query: 423 TAIAFSRAKTVSVSILPPPPQVATLGSLSTQWCYGAALFCQRRYKYL 283
T I RAK V VSILPPPPQVATLGSLSTQWCYGAALFCQ YKYL
Sbjct: 158 TVITL*RAKIVLVSILPPPPQVATLGSLSTQWCYGAALFCQLCYKYL 18
Score = 34.5 bits (69), Expect(3) = 1e-028
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3 / -1
Query: 576 LNPYWVDSKYYM*CDGVDSPRTL 508
+N V ++YY CDG+DSPRTL
Sbjct: 311 VNKVTV*TQYYASCDGIDSPRTL 243
Score = 29.5 bits (58), Expect(3) = 1e-028
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2 / -2
Query: 706 SGQRRMKPHRSLCVQFI 656
S + M+PHRSLCVQ I
Sbjct: 469 SAKNIMRPHRSLCVQHI 419
Score = 28.1 bits (55), Expect(2) = 3e-026
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 657 INCTQSDLCGFIL 695
I CTQSDLCG I+
Sbjct: 420 ICCTQSDLCGLII 458
Score = 25.8 bits (50), Expect(3) = 4e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3 / -3
Query: 690 *NHIGHSVYNLY 655
*+ IGHSVYN+Y
Sbjct: 453 *DRIGHSVYNIY 418
Score = 23.1 bits (44), Expect(3) = 4e-021
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / -1
Query: 592 KYNTSSEPILGRL 554
+Y TSSEP +GRL
Sbjct: 362 RYITSSEPHVGRL 324
>gb|BM317408.1|BM317408 LG1_261_H08.g9_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 662
Score = 124 bits (266), Expect = 1e-027
Identities = 47/92 (51%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 81 GSLYALSSEVVEALATAKSDSLRMFDYEDVTIGAWMLAMNVKHEDNRAMCDSVCTPTSIA 260
G +YALS++VV +L +++S RMF EDVTIG+WMLAMNV HE+ A+C++ CT +S+A
Sbjct: 4 GPIYALSADVVASLVALRNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEADCTESSVA 183
Query: 261 VWDSKKCSGTCNVADKIKQLHNTTVCSKSPTL 356
VWD KCSG C+ K+ +LH C+ PT+
Sbjct: 184 VWDIPKCSGLCHPEVKMLELHQRKECTGGPTV 279
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 969,394,118
Number of Sequences: 832831
Number of extensions: 13797168
Number of successful extensions: 87734
Number of sequences better than 1.0e-020: 5
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 22218158534
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)