TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023825.2.1
(1094 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD223826.1|CD223826 CCC1_30_C12.b1_A007 Callus culture/c... 145 2e-080
gb|CD210978.1|CD210978 HS1_58_H07.b1_A012 Heat-shocked seed... 219 6e-056
gb|CN127412.1|CN127412 RHOH1_22_H01.g3_A002 Acid- and alkal... 159 7e-054
gb|CF488370.1|CF488370 POL1_49_B07.g1_A002 Pollen Sorghum b... 153 6e-052
gb|BG739664.1|BG739664 EM1_73_F03.b1_A002 Embryo 1 (EM1) So... 147 7e-051
gb|CD231796.1|CD231796 SS1_23_D05.g1_A012 Salt-stressed see... 144 3e-049
gb|CN145882.1|CN145882 WOUND1_36_A05.b1_A002 Wounded leaves... 159 6e-043
gb|BE918628.1|BE918628 OV1_4_C03.b1_A002 Ovary 1 (OV1) Sorg... 159 2e-042
gb|CN127327.1|CN127327 RHOH1_22_H01.b1_A002 Acid- and alkal... 159 3e-042
gb|CN139301.1|CN139301 OX1_21_F05.b1_A002 Oxidatively-stres... 159 3e-042
gb|CN128398.1|CN128398 RHOH1_29_F09.b1_A002 Acid- and alkal... 159 3e-042
gb|BM324798.1|BM324798 PIC1_35_G09.b1_A002 Pathogen-infecte... 137 2e-038
gb|CD210040.1|CD210040 HS1_56_F11.g1_A012 Heat-shocked seed... 159 7e-038
gb|CD210818.1|CD210818 HS1_66_C12.b1_A012 Heat-shocked seed... 159 7e-038
gb|CN151877.1|CN151877 WOUND1_78_G01.b1_A002 Wounded leaves... 157 2e-037
gb|CN126958.1|CN126958 RHOH1_20_D08.b1_A002 Acid- and alkal... 157 3e-037
gb|BE598560.1|BE598560 PI1_83_A08.g1_A002 Pathogen induced ... 81 7e-037
gb|CB924981.1|CB924981 ABA1_29_B09.b1_A012 Abscisic acid-tr... 155 1e-036
gb|CD210547.1|CD210547 HS1_48_D07.b1_A012 Heat-shocked seed... 155 1e-036
gb|CD231560.1|CD231560 SS1_22_F12.b1_A012 Salt-stressed see... 154 2e-036
gb|CF488175.1|CF488175 POL1_48_F01.b1_A002 Pollen Sorghum b... 154 2e-036
gb|CF488612.1|CF488612 POL1_51_C07.b1_A002 Pollen Sorghum b... 154 2e-036
gb|CN124045.1|CN124045 RHOH1_2_G02.b1_A002 Acid- and alkali... 154 2e-036
gb|CF485067.1|CF485067 POL1_29_F04.b1_A002 Pollen Sorghum b... 151 1e-035
gb|BZ412929.1|BZ412929 232a8_13 Subclones from BAC clones m... 79 2e-035
gb|CF482279.1|CF482279 POL1_6_B02.b1_A002 Pollen Sorghum bi... 151 2e-035
gb|BE598668.1|BE598668 PI1_81_G10.b1_A002 Pathogen induced ... 147 3e-034
gb|CD231552.1|CD231552 SS1_22_E10.b1_A012 Salt-stressed see... 144 3e-033
gb|BE359364.1|BE359364 DG1_40_C12.g1_A002 Dark Grown 1 (DG1... 120 3e-032
gb|CF487514.1|CF487514 POL1_44_F09.b1_A002 Pollen Sorghum b... 137 3e-031
gb|CD221953.1|CD221953 CCC1_1_H12.b1_A007 Callus culture/ce... 136 7e-031
gb|BZ412928.1|BZ412928 232a8_08 Subclones from BAC clones m... 63 9e-031
gb|BE356258.1|BE356258 DG1_123_C11.g1_A002 Dark Grown 1 (DG... 132 9e-030
gb|CF484773.1|CF484773 POL1_27_H11.b1_A002 Pollen Sorghum b... 130 4e-029
gb|CD204455.1|CD204455 HS1_8_G10.b1_A012 Heat-shocked seedl... 118 5e-029
gb|CD228492.1|CD228492 CCC1_8_G08.b1_A007 Callus culture/ce... 124 2e-027
gb|CD235683.1|CD235683 SS1_37_D06.b1_A012 Salt-stressed see... 63 2e-026
gb|CF426998.1|CF426998 PH1_3_A01.b1_A002 Phosphorous-defici... 117 2e-025
gb|BM331709.1|BM331709 PIC1_59_F10.g1_A002 Pathogen-infecte... 114 2e-024
gb|BG355444.1|BG355444 EM1_16_E09.b1_A002 Embryo 1 (EM1) So... 63 2e-023
gb|CF486855.1|CF486855 POL1_40_E06.b1_A002 Pollen Sorghum b... 111 2e-023
gb|CF489871.1|CF489871 POL1_61_D02.b1_A002 Pollen Sorghum b... 111 2e-023
gb|CW133512.1|CW133512 104_517_11116803_116_34808_010 Sorgh... 63 3e-023
gb|CW178060.1|CW178060 104_591_11159361_116_36611_037 Sorgh... 66 3e-022
gb|BG558216.1|BG558216 RHIZ2_64_E07.b1_A003 Rhizome2 (RHIZ2... 63 5e-022
gb|BM322948.1|BM322948 PIC1_15_E04.b1_A002 Pathogen-infecte... 60 8e-022
>gb|CD223826.1|CD223826 CCC1_30_C12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_C12_A007 3', mRNA sequence
Length = 680
Score = 145 bits (312), Expect(4) = 2e-076
Identities = 56/60 (93%), Positives = 57/60 (95%)
Frame = -3 / -3
Query: 477 FQPPYLHPKFPQQPFLHTQGHHKSECCRKLNQLLPAKLQFQYTSKASAHKDLDHPQTLDY 298
FQPPY HPKFPQQ FLHTQGHHKS+CCRKLNQLLPAKLQ QYTSKASAHKDLDHPQTLDY
Sbjct: 180 FQPPY*HPKFPQQHFLHTQGHHKSKCCRKLNQLLPAKLQSQYTSKASAHKDLDHPQTLDY 1
Score = 138 bits (296), Expect(5) = 2e-080
Identities = 54/55 (98%), Positives = 54/55 (98%)
Frame = +3 / +3
Query: 300 NPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKVVEETWGAN 464
NPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYAR VVEETWGAN
Sbjct: 3 NPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARNVVEETWGAN 167
Score = 109 bits (232), Expect(4) = 1e-055
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = +1 / +1
Query: 298 IIQSLRMIQIFMC*SL*SILELKFGR*KLVQFSTTF*FVMTLSMQERLLRKLGVQI 465
IIQSLRMIQIFMC*SL*SIL LKFGR*KLVQFSTTF*FVMTLSMQE LLRKLGV I
Sbjct: 1 IIQSLRMIQIFMC*SL*SILGLKFGR*KLVQFSTTF*FVMTLSMQEMLLRKLGVLI 168
Score = 99.1 bits (210), Expect(4) = 6e-053
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -1 / -1
Query: 464 ICTPSFLNNLSCILRVITNQNVVEN*TSFYLPNFNSNILQRLQH 333
I TPSFLNN+SCILRVITNQNVVEN*TSFYLPNFN NILQRLQH
Sbjct: 167 ISTPSFLNNISCILRVITNQNVVEN*TSFYLPNFNPNILQRLQH 36
Score = 92.3 bits (195), Expect(4) = 2e-076
Identities = 37/46 (80%), Positives = 39/46 (84%)
Frame = -2 / -2
Query: 946 TYIIHAKSMF*DYKASTWPAPLYRHKLQSLVPSISVPEPSFRWNAL 809
TYII AK+MF*DYKASTWPAP YRH Q+LV ISVPEPSFRWN L
Sbjct: 664 TYIIEAKTMF*DYKASTWPAPCYRHNEQNLVHPISVPEPSFRWNLL 527
Score = 90.0 bits (190), Expect(4) = 4e-043
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +2 / +2
Query: 299 *SRV*G*SRSLCAEAFEVYWN*SLAGKSWFSFRQHSDL**P*V 427
*SRV*G*SRSLCAEAFEVYW+*SLAGKSWFSFRQH DL**P*V
Sbjct: 2 *SRV*G*SRSLCAEAFEVYWD*SLAGKSWFSFRQHFDL**P*V 130
Score = 86.8 bits (183), Expect(4) = 2e-044
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = -2 / -2
Query: 454 QVSSTTFLAYSGSSQIRMLSKTEPAFTCQTSIPIYFK 344
QVSSTTFLAYSGSSQI+MLSKTEPAFTCQTSIPIYFK
Sbjct: 157 QVSSTTFLAYSGSSQIKMLSKTEPAFTCQTSIPIYFK 47
Score = 84.0 bits (177), Expect(5) = 2e-080
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2 / +2
Query: 809 QGIPAKTWLWY*NRGDERL*FVSVQRCRPCASFVISKH*LCMNNVS 946
Q IPAKTWLW+*NR DE L +SV RC PCASFVISKH LC+NNVS
Sbjct: 527 QEIPAKTWLWH*NRVDEVLFVMSVTRCWPCASFVISKHCLCLNNVS 664
Score = 79.0 bits (166), Expect(4) = 1e-055
Identities = 38/46 (82%), Positives = 39/46 (84%)
Frame = +3 / +3
Query: 810 RAFQRKLGSGTEIEGTRDCSLCLYNGAGHVLAL*SQNIDFA*IM*V 947
R FQRKLGSGTEI TR CSLCL +GAGHVLAL*SQNI FA IM*V
Sbjct: 528 RRFQRKLGSGTEIGWTRFCSLCL*HGAGHVLAL*SQNIVFASIM*V 665
Score = 75.8 bits (159), Expect(4) = 6e-053
Identities = 32/46 (69%), Positives = 34/46 (73%)
Frame = -3 / -3
Query: 945 LTLFMQSQCFEITKLAHGRHRCTDTNYSLSSPLFQYQSQVFAGMPC 808
LTL Q QCFEITKLAHG+HR TD SS LFQ QSQVFAG+ C
Sbjct: 663 LTLLRQRQCFEITKLAHGQHRVTDITNRTSSTLFQCQSQVFAGISC 526
Score = 74.8 bits (157), Expect(4) = 4e-043
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +1 / +1
Query: 805 SAGHSSENLALVLK*RGRETVVCVCTTVPAMC*LCNLKTLTLHE*CKL 948
+AG SSENLAL LK* GR +V VC TV AMC*LCNLKTL+L +*CKL
Sbjct: 523 TAGDSSENLALALK*GGRGSVRYVCNTVLAMC*LCNLKTLSLPQ*CKL 666
Score = 74.4 bits (156), Expect(4) = 2e-044
Identities = 35/47 (74%), Positives = 36/47 (76%)
Frame = -1 / -1
Query: 947 NLHYSCKVNVLRLQS*HMAGTVVQTQTTVSRPLYFSTRAKFSLECPA 807
NLHY K NVLRLQS*HMA TV+QT T RP YFS RAKFSLE PA
Sbjct: 665 NLHY*GKDNVLRLQS*HMASTVLQT*RTEPRPPYFSARAKFSLESPA 525
Score = 62.5 bits (130), Expect(4) = 2e-076
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -3 / -3
Query: 678 EATSSLCF*GMQYLGTFIAHHGSRPSDLCSVFYDA 574
++ L *GMQY G FIAHHGS PSDLCSVFY+A
Sbjct: 372 QSNFQLML*GMQYFGDFIAHHGSHPSDLCSVFYEA 268
Score = 54.2 bits (112), Expect(5) = 2e-080
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +1 / +3
Query: 703 IIIDSPGQNNLKCFLLCADKLLNYRI 780
IIIDS G NNLKCFLLCA K++NYRI
Sbjct: 393 IIIDSRGPNNLKCFLLCAKKIINYRI 470
Score = 52.8 bits (109), Expect(5) = 2e-080
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +2 / +2
Query: 572 QAS*KTLQRSLGRLP**AIKVPKYCIPQ 655
+AS*KTLQRSLG LP**A+K PKYCIPQ
Sbjct: 266 KAS*KTLQRSLG*LP**AMKSPKYCIPQ 349
Score = 52.4 bits (108), Expect(4) = 6e-053
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1 / -2
Query: 707 IIIEKHPQCPKQLPAYAFEECNIWGL 630
IIIEK+PQCPKQLPAYA +WGL
Sbjct: 400 IIIEKYPQCPKQLPAYALRNAILWGL 323
Score = 47.8 bits (98), Expect(5) = 2e-080
Identities = 20/26 (76%), Positives = 21/26 (80%)
Frame = +1 / +3
Query: 631 SPQILHSSKA*AGSCFGHCGCFSIII 708
SPQ + KA*AGSCFGHCG FSIII
Sbjct: 324 SPQSIAFLKA*AGSCFGHCGYFSIII 401
Score = 47.3 bits (97), Expect(4) = 1e-055
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3 / +2
Query: 630 KSPNIAFLKSISWKLLRTLWVLFNNN 707
KSP +SISWKLL TLW+LFNNN
Sbjct: 323 KSPKYCIPQSISWKLLWTLWILFNNN 400
Score = 45.1 bits (92), Expect(4) = 1e-055
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3 / +2
Query: 702 NNN*FAWSEQPEVFLAMCRQIIELQD 779
NNN*FA EQPEVFLAMC++ +LQD
Sbjct: 392 NNN*FARPEQPEVFLAMCQKNNQLQD 469
Score = 45.1 bits (92), Expect(4) = 2e-076
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = -3 / -1
Query: 780 NPVVQ*FVGT*QETLQVVLTRRINYY 703
NPVV F GT*QETLQVV RINYY
Sbjct: 470 NPVVDYFFGT*QETLQVVRASRINYY 393
Score = 44.1 bits (90), Expect(4) = 6e-053
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -2 / -3
Query: 781 KSCSSIICRHIARNTSGCSDQANQLLL 701
+SCS + HIARNTSGCS ANQLLL
Sbjct: 471 QSCS*LFFWHIARNTSGCSGLANQLLL 391
Score = 42.8 bits (87), Expect(4) = 2e-044
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2 / -3
Query: 706 LLLKSTHNVRSNFQLMLLRNAIFGDF 629
LLLKS HNV+SNFQLML FGDF
Sbjct: 399 LLLKSIHNVQSNFQLML*GMQYFGDF 322
Score = 38.6 bits (78), Expect(4) = 2e-044
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = -1 / -2
Query: 779 IL*FNNLSAHSKKHFRLF*PGESIII 702
IL* AHSKKHFRLF P ESIII
Sbjct: 469 IL*LIIFLAHSKKHFRLFGPRESIII 392
Score = 36.8 bits (74), Expect(4) = 4e-043
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = +2 / +1
Query: 704 **LIRLVRTT*SVSCYVPTNY*TTG 778
**LIR RTT*SVSCYVP TTG
Sbjct: 394 **LIREARTT*SVSCYVPKK*STTG 468
Score = 36.3 bits (73), Expect(4) = 4e-043
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 574 GVIKNXXXXXXXXXMMSYKSPQILHSSK 657
G++KN MMSY+ P++LHSSK
Sbjct: 268 GLVKNTTEITGMTTMMSYEVPKVLHSSK 351
>gb|CD210978.1|CD210978 HS1_58_H07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_H07_A012 3', mRNA sequence
Length = 737
Score = 219 bits (473), Expect = 6e-056
Identities = 80/92 (86%), Positives = 87/92 (94%)
Frame = +3 / +2
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G WKPRM+ NP YKGPWKRK+IKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPL+Y+GIEV
Sbjct: 44 GTWKPRMIPNPEYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLQYVGIEV 223
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWGAN 464
WQVKAGSVFDNILICDDP+YAR VV+ET+ AN
Sbjct: 224 WQVKAGSVFDNILICDDPDYARHVVDETFAAN 319
Score = 155 bits (334), Expect = 8e-037
Identities = 65/109 (59%), Positives = 77/109 (70%)
Frame = -3 / -1
Query: 477 FQPPYLHPKFPQQPFLHTQGHHKSECCRKLNQLLPAKLQFQYTSKASAHKDLDHPQTLDY 298
FQPPYL KF Q LH+ H KS+CC+K NQL PA+LQ +T+K S H L HPQTLD
Sbjct: 332 FQPPYLQQKFHLQHVLHSLDHRKSKCCQKPNQL*PARLQSPHTAKVSKHIGLGHPQTLDC 153
Query: 297 RSMGSSIYPCS*DF*FSCVSKVPCMLDLIPFWASIFHPHLHPMCQAFCP 151
+S GSSI+ CS*D *FS S VPC+LD + FWAS++ HPM QAFCP
Sbjct: 152 QSTGSSIFLCS*DS*FSSASMVPCILD*VSFWASMYRLRHHPMTQAFCP 6
Score = 128 bits (275), Expect = 1e-028
Identities = 62/106 (58%), Positives = 78/106 (73%)
Frame = +1 / +3
Query: 148 RRTKSLTHGMKMRMEYGSPEWYQIQHTRDLGNARELKILTTRVNGRPHGSIIQSLRMIQI 327
+RTKSL+HGM + +GSPE Y IQ+TRD G+ R+L+ILTT+ NGRP G IQSLRM Q
Sbjct: 3 QRTKSLSHGMMTKTVHGSPE*YLIQNTRDHGSGRKLRILTTKENGRPRGLTIQSLRMTQT 182
Query: 328 FMC*SL*SILELKFGR*KLVQFSTTF*FVMTLSMQERLLRKLGVQI 465
+M *+L S+ LK GR KLV+F TTF*F M +MQ+ L KL +QI
Sbjct: 183 YMF*NLCSMWGLKSGRSKLVRFLTTF*FAMIQTMQDML*MKLLLQI 320
Score = 104 bits (222), Expect = 2e-021
Identities = 56/89 (62%), Positives = 64/89 (71%)
Frame = +2 / +1
Query: 146 SEGQKA*HMG*R*GWNMEAQNGIKSSIQGTLETQEN*KS*LQG*MEDPMDR*SRV*G*SR 325
S+GQKA* MG* MEAQN S IQGT+E +EN*+S*LQ MEDP+D SRV*G* R
Sbjct: 1 SKGQKA*VMG**RRRYMEAQNDT*SRIQGTMEAEEN*ES*LQRKMEDPVD*QSRV*G*PR 180
Query: 326 SLCAEAFEVYWN*SLAGKSWFSFRQHSDL 412
+C E F V +*SLAG+SWF F QH DL
Sbjct: 181 PICFETFAVCGD*SLAGQSWFGF*QHFDL 267
Score = 71.6 bits (150), Expect(2) = 7e-026
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = -1 / -2
Query: 296 DPWGLPFTLVVRIFNSLAFPRSLVCWI*YHSGLPYSILIFIPCVRLFVL 150
+P GLPF+ VVRI N L P SLV WI YHSGLP ++ + IP +RLFVL
Sbjct: 151 NPRGLPFSFVVRILNFLPLPWSLVFWIRYHSGLPCTVFVIIP*LRLFVL 5
Score = 67.5 bits (141), Expect(2) = 7e-026
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = -1 / -2
Query: 464 ICTPSFLNNLSCILRVITNQNVVEN*TSFYLPNFNSNILQRLQH 333
IC+ SF+ N+SCI+ +I NQNVV+N TSF LP+FN +ILQR Q+
Sbjct: 319 ICSKSFIYNMSCIVWIIANQNVVKNRTSFDLPDFNPHILQRFQN 188
>gb|CN127412.1|CN127412 RHOH1_22_H01.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_H01_A002 5', mRNA sequence
Length = 756
Score = 159 bits (342), Expect(2) = 7e-054
Identities = 56/90 (62%), Positives = 69/90 (76%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 447 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 626
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 627 WQVKSGTLFDNFIITDDPALAKTFAEETWG 716
Score = 92.7 bits (196), Expect(2) = 1e-024
Identities = 41/92 (44%), Positives = 59/92 (64%)
Frame = -1 / -2
Query: 284 LPFTLVVRIFNSLAFPRSLVCWI*YHSGLPYSILIFIPCVRLFVLRIRNLFWDRIIALWL 105
LPFTLVVR+ + L P SLV W+ G P++I + IP +RL +R+RN + IIAL L
Sbjct: 542 LPFTLVVRVLDFLLLPWSLVFWVWNGRGSPFTIFLIIPVLRLLSIRVRNFLGNIIIALRL 363
Query: 104 NFIRIFNIFSVIPILRPFGVNILNFTRRENIP 9
+R+ N+ VIP+LR + +L+ R +NIP
Sbjct: 362 LVLRVRNVLLVIPVLRLLSLWVLDLLRGQNIP 267
Score = 73.5 bits (154), Expect(2) = 7e-054
Identities = 25/36 (69%), Positives = 32/36 (88%)
Frame = +3 / +3
Query: 12 DILPPRKIKDVHAKRPKDWDDREYIEDPDEVKPEGY 119
DILPP++IKD AK+P+DWDD+EYI DP++ KPEGY
Sbjct: 270 DILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGY 377
Score = 42.3 bits (86), Expect(2) = 1e-024
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -2 / -3
Query: 454 QVSSTTFLAYSGSSQIRMLSKTEPAFTCQTSIPIYFK 344
QVSS LA +GSS + LS P TC +S+P+YF+
Sbjct: 712 QVSSAKVLANAGSSVMMKLSNKVPDLTCHSSMPMYFR 602
>gb|CF488370.1|CF488370 POL1_49_B07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_B07_A002 5', mRNA sequence
Length = 556
Score = 153 bits (328), Expect(2) = 6e-052
Identities = 54/90 (60%), Positives = 67/90 (74%)
Frame = +3 / -1
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 274 GEWTAPTIPKKKYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 95
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 94 WQVKSGTLFDNFIITDDPALAKTFAEETWG 5
Score = 86.8 bits (183), Expect(2) = 7e-023
Identities = 40/92 (43%), Positives = 58/92 (63%)
Frame = -1 / +2
Query: 284 LPFTLVVRIFNSLAFPRSLVCWI*YHSGLPYSILIFIPCVRLFVLRIRNLFWDRIIALWL 105
LPFTLVVR+ + L P SLV + G P++I + IP +RL +R+RN + IIAL L
Sbjct: 179 LPFTLVVRVLDFLLLPWSLVFFFWNGRGSPFTIFLIIPVLRLLSIRVRNFLGNIIIALRL 358
Query: 104 NFIRIFNIFSVIPILRPFGVNILNFTRRENIP 9
+R+ N+ VIP+LR + +L+ R +NIP
Sbjct: 359 LVLRVRNVLLVIPVLRLLSLWVLDLLRGQNIP 454
Score = 73.5 bits (154), Expect(2) = 6e-052
Identities = 25/36 (69%), Positives = 32/36 (88%)
Frame = +3 / -1
Query: 12 DILPPRKIKDVHAKRPKDWDDREYIEDPDEVKPEGY 119
DILPP++IKD AK+P+DWDD+EYI DP++ KPEGY
Sbjct: 451 DILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGY 344
Score = 42.3 bits (86), Expect(2) = 7e-023
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -2 / +3
Query: 454 QVSSTTFLAYSGSSQIRMLSKTEPAFTCQTSIPIYFK 344
QVSS LA +GSS + LS P TC +S+P+YF+
Sbjct: 9 QVSSAKVLANAGSSVMMKLSNKVPDLTCHSSMPMYFR 119
>gb|BG739664.1|BG739664 EM1_73_F03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 546
Score = 147 bits (316), Expect(2) = 7e-051
Identities = 53/82 (64%), Positives = 66/82 (80%)
Frame = +3 / +2
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNP+YKGKWK P IDNP+F+DDP +Y LK+IGIE+
Sbjct: 299 GEWTAPTIPNPEYKGPWKQKKIKNPDYKGKWKAPLIDNPDFKDDPYIYAFDSLKHIGIEL 478
Query: 369 WQVKAGSVFDNILICDDPEYAR 434
WQVK+ ++FDNILI DDPEYA+
Sbjct: 479 WQVKSRTLFDNILITDDPEYAQ 544
Score = 84.5 bits (178), Expect(2) = 3e-021
Identities = 37/93 (39%), Positives = 53/93 (56%)
Frame = -1 / -3
Query: 287 GLPFTLVVRIFNSLAFPRSLVCWI*YHSGLPYSILIFIPCVRLFVLRIRNLFWDRIIALW 108
GLP LVV I + L P S V W+ G P++I + IP + L +R+RN + II LW
Sbjct: 397 GLPLALVVWILDFLLLPWSFVLWVRNGWGSPFTIFLIIPILWLLCIRVRNFLGNIIITLW 218
Query: 107 LNFIRIFNIFSVIPILRPFGVNILNFTRRENIP 9
L +RI N+F +IP+ G + + R+NIP
Sbjct: 217 LLVLRIRNVFLIIPVFWLLGFRVFDLLWRKNIP 119
Score = 75.3 bits (158), Expect(2) = 7e-051
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = +3 / +2
Query: 12 DILPPRKIKDVHAKRPKDWDDREYIEDPDEVKPEGY 119
DILPP+KIKD AK+P+DWDD+EYI DP++ KPEGY
Sbjct: 122 DILPPKKIKDPEAKKPEDWDDKEYIPDPEDKKPEGY 229
Score = 39.1 bits (79), Expect(2) = 3e-021
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -2 / -1
Query: 436 FLAYSGSSQIRMLSKTEPAFTCQTSIPIYFK 344
F AYSGSS I+MLS TC +S+P+ FK
Sbjct: 546 FWAYSGSSVIKMLSNKVLDLTCHSSMPMCFK 454
>gb|CD231796.1|CD231796 SS1_23_D05.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_23_D05_A012 5', mRNA sequence
Length = 655
Score = 144 bits (308), Expect(2) = 3e-049
Identities = 50/78 (64%), Positives = 62/78 (79%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 414 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 593
Query: 369 WQVKAGSVFDNILICDDP 422
WQVK+G++FDN +I DDP
Sbjct: 594 WQVKSGTLFDNFIITDDP 647
Score = 92.7 bits (196), Expect(2) = 5e-022
Identities = 41/92 (44%), Positives = 59/92 (64%)
Frame = -1 / -3
Query: 284 LPFTLVVRIFNSLAFPRSLVCWI*YHSGLPYSILIFIPCVRLFVLRIRNLFWDRIIALWL 105
LPFTLVVR+ + L P SLV W+ G P++I + IP +RL +R+RN + IIAL L
Sbjct: 509 LPFTLVVRVLDFLLLPWSLVFWVWNGRGSPFTIFLIIPVLRLLSIRVRNFLGNIIIALRL 330
Query: 104 NFIRIFNIFSVIPILRPFGVNILNFTRRENIP 9
+R+ N+ VIP+LR + +L+ R +NIP
Sbjct: 329 LVLRVRNVLLVIPVLRLLSLWVLDLLRGQNIP 234
Score = 73.5 bits (154), Expect(2) = 3e-049
Identities = 25/36 (69%), Positives = 32/36 (88%)
Frame = +3 / +3
Query: 12 DILPPRKIKDVHAKRPKDWDDREYIEDPDEVKPEGY 119
DILPP++IKD AK+P+DWDD+EYI DP++ KPEGY
Sbjct: 237 DILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGY 344
Score = 33.6 bits (67), Expect(2) = 5e-022
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2 / -1
Query: 430 AYSGSSQIRMLSKTEPAFTCQTSIPIYFK 344
A +GSS + LS P TC +S+P+YF+
Sbjct: 655 ANAGSSVMMKLSNKVPDLTCHSSMPMYFR 569
>gb|CN145882.1|CN145882 WOUND1_36_A05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_A05_A002 3', mRNA sequence
Length = 801
Score = 159 bits (342), Expect(2) = 6e-043
Identities = 56/90 (62%), Positives = 69/90 (76%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 123 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 302
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 303 WQVKSGTLFDNFIITDDPALAKTFAEETWG 392
Score = 36.8 bits (74), Expect(2) = 6e-043
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3 / +3
Query: 69 DDREYIEDPDEVKPEGY 119
DD+EYI DP++ KPEGY
Sbjct: 3 DDKEYIPDPEDKKPEGY 53
>gb|BE918628.1|BE918628 OV1_4_C03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 495
Score = 159 bits (342), Expect(2) = 2e-042
Identities = 56/90 (62%), Positives = 69/90 (76%)
Frame = +3 / +2
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 125 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 304
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 305 WQVKSGTLFDNFIITDDPALAKTFAEETWG 394
Score = 35.0 bits (70), Expect(2) = 2e-042
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3 / +2
Query: 69 DDREYIEDPDEVKPEGY 119
+D+EYI DP++ KPEGY
Sbjct: 5 EDKEYIPDPEDKKPEGY 55
>gb|CN127327.1|CN127327 RHOH1_22_H01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_H01_A002 3', mRNA sequence
Length = 832
Score = 159 bits (342), Expect(2) = 3e-042
Identities = 56/90 (62%), Positives = 69/90 (76%)
Frame = +3 / +1
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 91 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 270
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 271 WQVKSGTLFDNFIITDDPALAKTFAEETWG 360
Score = 34.5 bits (69), Expect(2) = 3e-042
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 24 PRKIKDVHAKRPKDWDDRE 80
P++I D AK+P+DWDD E
Sbjct: 31 PKEIPDPDAKKPEDWDDEE 87
>gb|CN139301.1|CN139301 OX1_21_F05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_21_F05_A002 3', mRNA sequence
Length = 813
Score = 159 bits (342), Expect(2) = 3e-042
Identities = 56/90 (62%), Positives = 69/90 (76%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 72 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 251
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 252 WQVKSGTLFDNFIITDDPALAKTFAEETWG 341
Score = 34.5 bits (69), Expect(2) = 3e-042
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 24 PRKIKDVHAKRPKDWDDRE 80
P++I D AK+P+DWDD E
Sbjct: 12 PKEIPDPDAKKPEDWDDEE 68
>gb|CN128398.1|CN128398 RHOH1_29_F09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_29_F09_A002 3', mRNA sequence
Length = 759
Score = 159 bits (342), Expect(2) = 3e-042
Identities = 56/90 (62%), Positives = 69/90 (76%)
Frame = +3 / +1
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 79 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 258
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 259 WQVKSGTLFDNFIITDDPALAKTFAEETWG 348
Score = 34.5 bits (69), Expect(2) = 3e-042
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 24 PRKIKDVHAKRPKDWDDRE 80
P++I D AK+P+DWDD E
Sbjct: 19 PKEIPDPDAKKPEDWDDEE 75
>gb|BM324798.1|BM324798 PIC1_35_G09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 571
Score = 137 bits (294), Expect = 3e-031
Identities = 60/96 (62%), Positives = 73/96 (76%)
Frame = -1 / -1
Query: 296 DPWGLPFTLVVRIFNSLAFPRSLVCWI*YHSGLPYSILIFIPCVRLFVLRIRNLFWDRII 117
+P GLPF+LVVRI NSL P SLV WI YHSGLP ++ + IP +RLFVL IR LF + II
Sbjct: 571 NPRGLPFSLVVRILNSLPLPWSLVFWIRYHSGLPCTVFVIIP*LRLFVLWIRYLFRN*II 392
Query: 116 ALWLNFIRIFNIFSVIPILRPFGVNILNFTRRENIP 9
+LWLN IRIFNIF VIP+ F +NI + TRR++IP
Sbjct: 391 SLWLNLIRIFNIFPVIPVFWLFRINIFDLTRRKDIP 284
Score = 128 bits (274), Expect = 2e-028
Identities = 58/95 (61%), Positives = 71/95 (74%)
Frame = +1 / +3
Query: 10 GIFSLLVKLRMFTPKGLRIGMTENILKILMKLSQRAMILSQNRFLIRRTKSLTHGMKMRM 189
GI LLV+ +M K + GMT NILKIL+KLSQR MI NR+LI+RTKSL+HGM +
Sbjct: 285 GISFLLVRSKMLMRKSQKTGMTGNILKILIKLSQRDMIQFLNRYLIQRTKSLSHGMMTKT 464
Query: 190 EYGSPEWYQIQHTRDLGNARELKILTTRVNGRPHG 294
+GSPE Y IQ+TRD G+ REL+ILTT+ NGRP G
Sbjct: 465 VHGSPE*YLIQNTRDHGSGRELRILTTKENGRPRG 569
Score = 117 bits (251), Expect = 2e-025
Identities = 57/95 (60%), Positives = 63/95 (66%)
Frame = -3 / -3
Query: 294 SMGSSIYPCS*DF*FSCVSKVPCMLDLIPFWASIFHPHLHPMCQAFCPSDQESVLG*NHS 115
S GSSI+ S*D *FS S VPC+LD + FWAS++ HPM QAFCP D SV NH
Sbjct: 569 STGSSIFLSS*DS*FSSASMVPCILD*VSFWASMYRLRHHPMTQAFCPLD*VSV*ELNHI 390
Query: 114 PLA*LHQDLQYILCHPNP*AFWREHP*FYEEGEYP 10
PLA*L QDLQYI CHP+ AF H * YEE YP
Sbjct: 389 PLA*LDQDLQYIPCHPSLLAFSH*HL*SYEEEGYP 285
Score = 91.3 bits (193), Expect(2) = 2e-038
Identities = 31/36 (86%), Positives = 32/36 (88%)
Frame = +3 / +2
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWI 296
G WKPRM+ NP YKGPWKRKRIKNPNY GKWKTPWI
Sbjct: 464 GTWKPRMIPNPEYKGPWKRKRIKNPNY*GKWKTPWI 571
Score = 90.4 bits (191), Expect(2) = 2e-038
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +3 / +2
Query: 12 DILPPRKIKDVHAKRPKDWDDREYIEDPDEVKPEGY 119
DILPPRKIKDV+AK+PKDWDDREYIEDPD+VKPEGY
Sbjct: 287 DILPPRKIKDVNAKKPKDWDDREYIEDPDQVKPEGY 394
>gb|CD210040.1|CD210040 HS1_56_F11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_56_F11_A012 5', mRNA sequence
Length = 783
Score = 159 bits (342), Expect = 7e-038
Identities = 56/90 (62%), Positives = 69/90 (76%)
Frame = +3 / -1
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 765 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 586
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 585 WQVKSGTLFDNFIITDDPALAKTFAEETWG 496
>gb|CD210818.1|CD210818 HS1_66_C12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_66_C12_A012 3', mRNA sequence
Length = 716
Score = 159 bits (342), Expect = 7e-038
Identities = 56/90 (62%), Positives = 69/90 (76%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 27 GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 206
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 207 WQVKSGTLFDNFIITDDPALAKTFAEETWG 296
>gb|CN151877.1|CN151877 WOUND1_78_G01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_78_G01_A002 3', mRNA sequence
Length = 766
Score = 157 bits (338), Expect = 2e-037
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 24 GEWTAPTFPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIEL 203
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 204 WQVKSGTLFDNFIITDDPALAKTFAEETWG 293
>gb|CN126958.1|CN126958 RHOH1_20_D08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_20_D08_A002 3', mRNA sequence
Length = 760
Score = 157 bits (337), Expect = 3e-037
Identities = 55/90 (61%), Positives = 69/90 (76%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W + NP YKGPWK+K+IKNPN++GKWK P IDNP+F+DDP +Y LKYIGIE+
Sbjct: 18 GEWTAPTIPNPEYKGPWKQKKIKNPNFQGKWKAPLIDNPDFKDDPYIYAFDSLKYIGIEL 197
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWG 458
WQVK+G++FDN +I DDP A+ EETWG
Sbjct: 198 WQVKSGTLFDNFIITDDPALAKTFAEETWG 287
>gb|BE598560.1|BE598560 PI1_83_A08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 411
Score = 80.8 bits (170), Expect(3) = 9e-032
Identities = 32/40 (80%), Positives = 33/40 (82%)
Frame = -2 / -2
Query: 928 KSMF*DYKASTWPAPLYRHKLQSLVPSISVPEPSFRWNAL 809
K MF*DYKASTWPAP YRH Q+LV ISVPEPSFRWN L
Sbjct: 359 KDMF*DYKASTWPAPCYRHNEQNLVHPISVPEPSFRWNLL 240
Score = 69.8 bits (146), Expect(3) = 2e-027
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +3 / +1
Query: 810 RAFQRKLGSGTEIEGTRDCSLCLYNGAGHVLAL*SQNI 923
R FQRKLGSGTEI TR CSLCL +GAGHVLAL*SQN+
Sbjct: 241 RRFQRKLGSGTEIGWTRFCSLCL*HGAGHVLAL*SQNM 354
Score = 69.8 bits (146), Expect(4) = 7e-037
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +2 / +3
Query: 809 QGIPAKTWLWY*NRGDERL*FVSVQRCRPCASFVISKH 922
Q IPAKTWLW+*NR DE L +SV RC PCASFVISKH
Sbjct: 240 QEIPAKTWLWH*NRVDEVLFVMSVTRCWPCASFVISKH 353
Score = 66.1 bits (138), Expect(3) = 1e-025
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = -3 / -3
Query: 921 CFEITKLAHGRHRCTDTNYSLSSPLFQYQSQVFAGMPC 808
CFEITKLAHG+HR TD SS LFQ QSQVFAG+ C
Sbjct: 352 CFEITKLAHGQHRVTDITNRTSSTLFQCQSQVFAGISC 239
Score = 62.9 bits (131), Expect(3) = 2e-021
Identities = 29/39 (74%), Positives = 31/39 (79%)
Frame = -1 / -1
Query: 923 NVLRLQS*HMAGTVVQTQTTVSRPLYFSTRAKFSLECPA 807
+VLRLQS*HMA TV+QT T RP YFS RAKFSLE PA
Sbjct: 354 HVLRLQS*HMASTVLQT*RTEPRPPYFSARAKFSLESPA 238
Score = 54.2 bits (112), Expect(4) = 7e-037
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +1 / +3
Query: 703 IIIDSPGQNNLKCFLLCADKLLNYRI 780
IIIDS G NNLKCFLLCA K++NYRI
Sbjct: 105 IIIDSRGPNNLKCFLLCAKKIINYRI 182
Score = 51.0 bits (105), Expect(3) = 9e-032
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -1 / -3
Query: 707 IIIEKHPQCPKQLPAYAFEECNIWGL 630
IIIEK PQCPKQLPAYA +WGL
Sbjct: 112 IIIEKDPQCPKQLPAYALRNAILWGL 35
Score = 48.3 bits (99), Expect(4) = 7e-037
Identities = 20/26 (76%), Positives = 21/26 (80%)
Frame = +1 / +3
Query: 631 SPQILHSSKA*AGSCFGHCGCFSIII 708
SPQ + KA*AGSCFGHCG FSIII
Sbjct: 36 SPQSIAFLKA*AGSCFGHCGSFSIII 113
Score = 47.3 bits (97), Expect(3) = 2e-027
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3 / +2
Query: 630 KSPNIAFLKSISWKLLRTLWVLFNNN 707
KSP +SISWKLL TLW+LFNNN
Sbjct: 35 KSPKYCIPQSISWKLLWTLWILFNNN 112
Score = 46.0 bits (94), Expect(3) = 1e-025
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -3 / -1
Query: 678 EATSSLCF*GMQYLGTFIAHHGSRPSDL 595
++ L *GMQY G FIAHHGS PSDL
Sbjct: 84 QSNFQLML*GMQYFGDFIAHHGSHPSDL 1
Score = 45.1 bits (92), Expect(3) = 9e-032
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = -3 / -2
Query: 780 NPVVQ*FVGT*QETLQVVLTRRINYY 703
NPVV F GT*QETLQVV RINYY
Sbjct: 182 NPVVDYFFGT*QETLQVVRASRINYY 105
Score = 45.1 bits (92), Expect(3) = 2e-027
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3 / +2
Query: 702 NNN*FAWSEQPEVFLAMCRQIIELQD 779
NNN*FA EQPEVFLAMC++ +LQD
Sbjct: 104 NNN*FARPEQPEVFLAMCQKNNQLQD 181
Score = 44.1 bits (90), Expect(3) = 1e-025
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -2 / -1
Query: 781 KSCSSIICRHIARNTSGCSDQANQLLL 701
+SCS + HIARNTSGCS ANQLLL
Sbjct: 183 QSCS*LFFWHIARNTSGCSGLANQLLL 103
Score = 40.5 bits (82), Expect(3) = 2e-021
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = -2 / -1
Query: 706 LLLKSTHNVRSNFQLMLLRNAIFGDF 629
LLLK HNV+SNFQLML FGDF
Sbjct: 111 LLLKRIHNVQSNFQLML*GMQYFGDF 34
Score = 39.6 bits (80), Expect(4) = 7e-037
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2 / +2
Query: 596 RSLGRLP**AIKVPKYCIPQ 655
RSLG LP**A+K PKYCIPQ
Sbjct: 2 RSLG*LP**AMKSPKYCIPQ 61
Score = 38.6 bits (78), Expect(3) = 2e-021
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = -1 / -3
Query: 779 IL*FNNLSAHSKKHFRLF*PGESIII 702
IL* AHSKKHFRLF P ESIII
Sbjct: 181 IL*LIIFLAHSKKHFRLFGPRESIII 104
>gb|CB924981.1|CB924981 ABA1_29_B09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_B09_A012 3', mRNA sequence
Length = 663
Score = 155 bits (333), Expect = 1e-036
Identities = 58/65 (89%), Positives = 63/65 (96%)
Frame = +3 / +1
Query: 270 KGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKVVEE 449
KGKWKTPWIDNPEFEDDPDLYVLKPL+Y+GIEVWQVKAGSVFDNILICDDP+YAR VV+E
Sbjct: 1 KGKWKTPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPDYARHVVDE 180
Query: 450 TWGAN 464
T+ AN
Sbjct: 181 TFAAN 195
>gb|CD210547.1|CD210547 HS1_48_D07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_48_D07_A012 3', mRNA sequence
Length = 684
Score = 155 bits (333), Expect = 1e-036
Identities = 54/88 (61%), Positives = 67/88 (76%)
Frame = +3 / +2
Query: 195 WKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQ 374
W + NP YKGPWK+K+IK PNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQ
Sbjct: 5 WTAPTIPNPEYKGPWKQKKIKTPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQ 184
Query: 375 VKAGSVFDNILICDDPEYARKVVEETWG 458
VK+G++FDN +I DDP A+ EETWG
Sbjct: 185 VKSGTLFDNFIITDDPALAKTFAEETWG 268
>gb|CD231560.1|CD231560 SS1_22_F12.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F12_A012 3', mRNA sequence
Length = 664
Score = 154 bits (331), Expect = 2e-036
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +3 / +2
Query: 216 NPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVF 395
NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++F
Sbjct: 5 NPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLF 184
Query: 396 DNILICDDPEYARKVVEETWG 458
DN +I DDP A+ EETWG
Sbjct: 185 DNFIITDDPALAKTFAEETWG 247
>gb|CF488175.1|CF488175 POL1_48_F01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_F01_A002 3', mRNA sequence
Length = 664
Score = 154 bits (331), Expect = 2e-036
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +3 / +2
Query: 216 NPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVF 395
NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++F
Sbjct: 5 NPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLF 184
Query: 396 DNILICDDPEYARKVVEETWG 458
DN +I DDP A+ EETWG
Sbjct: 185 DNFIITDDPALAKTFAEETWG 247
>gb|CF488612.1|CF488612 POL1_51_C07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_51_C07_A002 3', mRNA sequence
Length = 684
Score = 154 bits (331), Expect = 2e-036
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +3 / +2
Query: 216 NPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVF 395
NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++F
Sbjct: 2 NPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLF 181
Query: 396 DNILICDDPEYARKVVEETWG 458
DN +I DDP A+ EETWG
Sbjct: 182 DNFIITDDPALAKTFAEETWG 244
>gb|CN124045.1|CN124045 RHOH1_2_G02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_2_G02_A002 3', mRNA sequence
Length = 660
Score = 154 bits (331), Expect = 2e-036
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +3 / +2
Query: 216 NPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVF 395
NP YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++F
Sbjct: 5 NPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLF 184
Query: 396 DNILICDDPEYARKVVEETWG 458
DN +I DDP A+ EETWG
Sbjct: 185 DNFIITDDPALAKTFAEETWG 247
>gb|CF485067.1|CF485067 POL1_29_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_29_F04_A002 3', mRNA sequence
Length = 654
Score = 151 bits (325), Expect = 1e-035
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +3 / +1
Query: 219 PAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFD 398
P YKGPWK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++FD
Sbjct: 1 PEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFD 180
Query: 399 NILICDDPEYARKVVEETWG 458
N +I DDP A+ EETWG
Sbjct: 181 NFIITDDPALAKTFAEETWG 240
>gb|BZ412929.1|BZ412929 232a8_13 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 232a8, DNA
sequence
Length = 682
Score = 79.4 bits (167), Expect(3) = 3e-035
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = -3 / -1
Query: 471 PPYLHPKFPQQPFLHTQGHHKSECCRKLNQLLPA 370
PPY HPKFPQQ FLHTQGHHKS CRKLNQLLPA
Sbjct: 580 PPY*HPKFPQQHFLHTQGHHKSNGCRKLNQLLPA 479
Score = 73.5 bits (154), Expect(3) = 2e-035
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 372 QVKAGSVFDNILICDDPEYARKVVEETWGAN 464
QVKAGSVFDN LICDDPEYAR VVEETWGAN
Sbjct: 481 QVKAGSVFDNHLICDDPEYARNVVEETWGAN 573
Score = 67.5 bits (141), Expect(3) = 2e-023
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = -1 / -2
Query: 464 ICTPSFLNNLSCILRVITNQNVVEN*TSFYLPNF 363
I TPSFLNN+SCILRVITNQ VVEN*TSFYL F
Sbjct: 573 ISTPSFLNNISCILRVITNQMVVEN*TSFYLHTF 472
Score = 64.8 bits (135), Expect(3) = 3e-035
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = -3 / -1
Query: 396 RKLNQLLPAKLQFQYTSKASAHKDLDHPQTLDYRSMGSS 280
+K ++PAKLQFQYTSKASAHKDLDHPQTL ++ S+
Sbjct: 385 KKKLYIVPAKLQFQYTSKASAHKDLDHPQTLQNNTVDSA 269
Score = 62.9 bits (131), Expect(3) = 2e-035
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +3 / +1
Query: 306 EFEDDPDLYVLKPLKYIGIEVWQV 377
EFEDDPDLYVLKPLKYIGIEVWQV
Sbjct: 295 EFEDDPDLYVLKPLKYIGIEVWQV 366
Score = 58.3 bits (121), Expect(3) = 1e-026
Identities = 28/31 (90%), Positives = 28/31 (90%)
Frame = +1 / +2
Query: 373 R*KLVQFSTTF*FVMTLSMQERLLRKLGVQI 465
R*KLVQFSTT *FVMTLSMQE LLRKLGV I
Sbjct: 482 R*KLVQFSTTI*FVMTLSMQEMLLRKLGVLI 574
Score = 57.4 bits (119), Expect(3) = 2e-035
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +3 / +1
Query: 246 KRIKNPNYKGKWKTPWIDNP 305
+RIKNPNYKGKWKTPWIDNP
Sbjct: 70 QRIKNPNYKGKWKTPWIDNP 129
Score = 56.5 bits (117), Expect(3) = 1e-026
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = +2 / +3
Query: 305 RV*G*SRSLCAEAFEVYWN*SLAGKSWFSFRQ 400
RV*G*SRSLCAEAFEVYWN*SLAG + F Q
Sbjct: 294 RV*G*SRSLCAEAFEVYWN*SLAGTIYSFFFQ 389
Score = 49.2 bits (101), Expect(3) = 1e-026
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1 / +2
Query: 247 RELKILTTRVNGRPHGSIIQ 306
RELKILTTRVNGRPHGSIIQ
Sbjct: 71 RELKILTTRVNGRPHGSIIQ 130
Score = 48.7 bits (100), Expect(3) = 3e-035
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = -3 / -1
Query: 306 LDYRSMGSSIYPCS*DF*FS 247
LDYRSMGSSIYPCS*DF*FS
Sbjct: 130 LDYRSMGSSIYPCS*DF*FS 71
Score = 45.5 bits (93), Expect(3) = 2e-023
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / -2
Query: 296 DPWGLPFTLVVRIFNSL 246
DPWGLPFTLVVRIFNSL
Sbjct: 120 DPWGLPFTLVVRIFNSL 70
Score = 40.0 bits (81), Expect(3) = 2e-023
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1 / -2
Query: 377 YLPNFNSNILQRLQH 333
YLPNFNSNILQRLQH
Sbjct: 366 YLPNFNSNILQRLQH 322
>gb|CF482279.1|CF482279 POL1_6_B02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_6_B02_A002 3', mRNA sequence
Length = 653
Score = 151 bits (324), Expect = 2e-035
Identities = 52/81 (64%), Positives = 65/81 (80%)
Frame = +3 / +3
Query: 216 NPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVF 395
NP YKGPWK+K+IK PNY+GKWK P +DNP+F+DDP +Y LKYIGIE+WQVK+G++F
Sbjct: 3 NPEYKGPWKQKKIKTPNYQGKWKAPMVDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLF 182
Query: 396 DNILICDDPEYARKVVEETWG 458
DN +I DDP A+ EETWG
Sbjct: 183 DNFIITDDPALAKTFAEETWG 245
>gb|BE598668.1|BE598668 PI1_81_G10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 411
Score = 147 bits (316), Expect = 3e-034
Identities = 58/67 (86%), Positives = 59/67 (88%)
Frame = -3 / -1
Query: 210 PFWASIFHPHLHPMCQAFCPSDQESVLG*NHSPLA*LHQDLQYILCHPNP*AFWREHP*F 31
P WASIFHP HP CQAF PSDQESVLG*NHSPLA LHQDLQYILCHP+P*AFWRE P*F
Sbjct: 390 PSWASIFHPRPHPTCQAFWPSDQESVLG*NHSPLALLHQDLQYILCHPSP*AFWREDP*F 211
Query: 30 YEEGEYP 10
YEEG YP
Sbjct: 210 YEEGGYP 190
Score = 143 bits (306), Expect = 6e-033
Identities = 59/69 (85%), Positives = 62/69 (89%)
Frame = -1 / -2
Query: 209 HSGLPYSILIFIPCVRLFVLRIRNLFWDRIIALWLNFIRIFNIFSVIPILRPFGVNILNF 30
H GLPYSIL+ IP VRLF LRIRNLFWDRIIALWL FIRIFNIFSVIP+LRPFGV ILNF
Sbjct: 389 HPGLPYSILVLIPRVRLFGLRIRNLFWDRIIALWLYFIRIFNIFSVIPVLRPFGVKILNF 210
Query: 29 TRRENIPSG 3
TRRE+IP G
Sbjct: 209 TRREDIPIG 183
Score = 133 bits (286), Expect(2) = 3e-030
Identities = 59/69 (85%), Positives = 61/69 (88%)
Frame = +1 / +1
Query: 4 PEGIFSLLVKLRMFTPKGLRIGMTENILKILMKLSQRAMILSQNRFLIRRTKSLTHGMKM 183
P GI SLLVKLR+FTPKGLR GMTENILKILMK SQRAMILSQNRFLIRR KSLT GM+
Sbjct: 184 PIGISSLLVKLRIFTPKGLRTGMTENILKILMK*SQRAMILSQNRFLIRRPKSLTRGMRT 363
Query: 184 RMEYGSPEW 210
RMEYGSP W
Sbjct: 364 RMEYGSPGW 390
Score = 124 bits (265), Expect = 3e-027
Identities = 60/69 (86%), Positives = 63/69 (91%)
Frame = +2 / +2
Query: 11 GYSPSS*N*GCSRQKA*GLG*QRIY*RS**S*ARGL*FYPKTDS*SEGQKA*HMG*R*GW 190
GY PSS*N*G SRQKA*GLG*QRIY*RS**S ARGL*FYPKTDS*SEGQKA*H+G* GW
Sbjct: 191 GYPPSS*N*GSSRQKA*GLG*QRIY*RS**SKARGL*FYPKTDS*SEGQKA*HVG*GRGW 370
Query: 191 NMEAQNGIK 217
NMEAQ+G +
Sbjct: 371 NMEAQDGYR 397
Score = 21.7 bits (41), Expect(2) = 3e-030
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3 / +1
Query: 201 PRMVSNPAYK 230
P VSNPAYK
Sbjct: 382 PGWVSNPAYK 411
>gb|CD231552.1|CD231552 SS1_22_E10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_E10_A012 3', mRNA sequence
Length = 730
Score = 144 bits (308), Expect = 3e-033
Identities = 51/74 (68%), Positives = 64/74 (86%)
Frame = +3 / +1
Query: 237 WKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICD 416
WK+K+IKNP+YKGKWK P IDNP+F+DDP +Y LK+IGIE+WQVK+G++FDNILI D
Sbjct: 1 WKQKKIKNPDYKGKWKAPLIDNPDFKDDPYIYAFDSLKHIGIELWQVKSGTLFDNILITD 180
Query: 417 DPEYARKVVEETWG 458
DPEYA+K+ ETWG
Sbjct: 181 DPEYAKKLAVETWG 222
>gb|BE359364.1|BE359364 DG1_40_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 685
Score = 120 bits (257), Expect(2) = 3e-032
Identities = 44/91 (48%), Positives = 62/91 (68%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W+ + NP YKG WK K I NP+YKG+W P IDNP+F DDP+LY + +G E+
Sbjct: 159 GEWEAPQIDNPEYKGEWKPKMIPNPDYKGEWIHPEIDNPDFVDDPNLYAYDNIGVVGFEL 338
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEETWGA 461
WQVKAG++FDNI++ D + A++ ++T A
Sbjct: 339 WQVKAGTIFDNIVVTDSLDEAKEWAKKTVAA 431
Score = 40.0 bits (81), Expect(2) = 3e-032
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3 / +3
Query: 33 IKDVHAKRPKDWDDREYIEDPDEVKPEGY 119
I D AK+P DW D + I DP++ KPEG+
Sbjct: 3 IPDPAAKKPADWVDAKEILDPEDKKPEGW 89
>gb|CF487514.1|CF487514 POL1_44_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_44_F09_A002 3', mRNA sequence
Length = 638
Score = 137 bits (294), Expect = 3e-031
Identities = 48/74 (64%), Positives = 60/74 (81%)
Frame = +3 / +3
Query: 237 WKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICD 416
WK+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++FDN +I D
Sbjct: 3 WKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFIITD 182
Query: 417 DPEYARKVVEETWG 458
DP A+ EETWG
Sbjct: 183 DPALAKTFAEETWG 224
>gb|CD221953.1|CD221953 CCC1_1_H12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_H12_A007 3', mRNA sequence
Length = 639
Score = 136 bits (291), Expect = 7e-031
Identities = 49/77 (63%), Positives = 61/77 (79%)
Frame = +3 / +1
Query: 228 KGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNIL 407
KGPWK+K+IKNPN++GKWK P IDNP+F+DDP Y LKYIGIE+WQVK+G++FDN +
Sbjct: 1 KGPWKQKKIKNPNFQGKWKAPMIDNPDFKDDPYTYAFDSLKYIGIELWQVKSGTLFDNFI 180
Query: 408 ICDDPEYARKVVEETWG 458
I DDP A+ EET G
Sbjct: 181 ISDDPALAKTFAEETRG 231
>gb|BZ412928.1|BZ412928 232a8_08 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 232a8, DNA
sequence
Length = 690
Score = 63.4 bits (132), Expect(4) = 2e-026
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +1 / -1
Query: 160 SLTHGMKMRMEYGSPEWYQIQHTRDLGNAR 249
SLT GM+ RMEYGSP WY+IQHTRD GNAR
Sbjct: 93 SLTRGMRTRMEYGSPGWYRIQHTRDHGNAR 4
Score = 62.9 bits (131), Expect(4) = 9e-031
Identities = 23/29 (79%), Positives = 23/29 (79%)
Frame = -3 / +1
Query: 246 CVSKVPCMLDLIPFWASIFHPHLHPMCQA 160
CVS VPCMLD IP WASIFHP HP CQA
Sbjct: 7 CVSMVPCMLDSIPSWASIFHPRPHPTCQA 93
Score = 59.7 bits (124), Expect(4) = 3e-026
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -1 / +2
Query: 248 LAFPRSLVCWI*YHSGLPYSILIFIPCVRL 159
LAFP SLVCWI YH GLPYSIL+ IP VRL
Sbjct: 5 LAFPWSLVCWIRYHPGLPYSILVLIPRVRL 94
Score = 57.4 bits (119), Expect(4) = 5e-023
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3 / -3
Query: 189 GIWKPRMVSNPAYKGPWKRK 248
GIWKPRMVSNPAYKGPWKRK
Sbjct: 64 GIWKPRMVSNPAYKGPWKRK 5
Score = 52.8 bits (109), Expect(4) = 9e-031
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = -3 / +2
Query: 123 NHSPLA*LHQDLQYILCHPNP*A 55
NH PLA LHQDLQYILCHP+P*A
Sbjct: 350 NHKPLALLHQDLQYILCHPSP*A 418
Score = 44.1 bits (90), Expect(4) = 3e-026
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -1 / +3
Query: 122 IIALWLNFIRIFNIFSVIPILR 57
I LWL FIRIFNIFSVIP+LR
Sbjct: 351 ITNLWLYFIRIFNIFSVIPVLR 416
Score = 40.9 bits (83), Expect(4) = 2e-026
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = +2 / -1
Query: 56 A*GLG*QRIY*RS**S*ARGL*FY 127
A*GLG*QRIY*RS**S ARGL*F+
Sbjct: 417 A*GLG*QRIY*RS**SKARGL*FH 346
Score = 40.5 bits (82), Expect(4) = 9e-031
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1 / +3
Query: 65 ILRPFGVNILNFTRRENIPSG 3
I PFGV ILNFTRRE+IP G
Sbjct: 498 ITNPFGVKILNFTRREDIPIG 560
Score = 39.6 bits (80), Expect(4) = 9e-031
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3 / +3
Query: 168 CQAFCPSDQESVLG*NHSP 112
C F PSDQESVLG*NHSP
Sbjct: 222 CIPFWPSDQESVLG*NHSP 278
Score = 39.1 bits (79), Expect(4) = 5e-023
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1 / -3
Query: 58 LRIGMTENILKILMKLSQRAMI 123
LR GMTENILKILMK SQR +I
Sbjct: 415 LRTGMTENILKILMK*SQRFVI 350
Score = 39.1 bits (79), Expect(4) = 3e-026
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -1 / +1
Query: 161 LFVLRIRNLFWDRIIAL 111
LF LRIRNLFWDRIIAL
Sbjct: 229 LFGLRIRNLFWDRIIAL 279
Score = 38.2 bits (77), Expect(4) = 2e-026
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2 / -3
Query: 113 GL*FYPKTDS*SEGQK 160
GL*FYPKTDS*SEGQK
Sbjct: 277 GL*FYPKTDS*SEGQK 230
Score = 38.2 bits (77), Expect(4) = 2e-026
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1 / -3
Query: 4 PEGIFSLLVKLRMFTPKGLRI 66
P GI SLLVKLR+FTPKGL I
Sbjct: 559 PIGISSLLVKLRIFTPKGLVI 497
Score = 37.7 bits (76), Expect(4) = 5e-023
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3 / -2
Query: 12 DILPPRKIKDVHAKR 56
DILPPRKIKD+HAKR
Sbjct: 551 DILPPRKIKDLHAKR 507
Score = 37.3 bits (75), Expect(4) = 3e-026
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / +2
Query: 54 FWREHP*FYEEGEYP 10
FWRE P*FYEEG YP
Sbjct: 509 FWREDP*FYEEGGYP 553
Score = 35.0 bits (70), Expect(4) = 5e-023
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1 / -2
Query: 112 RAMILSQNRFLIRRTK 159
RAMILSQNRFLIRR K
Sbjct: 278 RAMILSQNRFLIRRPK 231
>gb|BE356258.1|BE356258 DG1_123_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 542
Score = 132 bits (283), Expect = 9e-030
Identities = 47/73 (64%), Positives = 59/73 (80%)
Frame = +3 / +1
Query: 240 KRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDD 419
K+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++FDN +I DD
Sbjct: 1 KQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFIITDD 180
Query: 420 PEYARKVVEETWG 458
P A+ EETWG
Sbjct: 181 PALAKTFAEETWG 219
>gb|CF484773.1|CF484773 POL1_27_H11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_27_H11_A002 3', mRNA sequence
Length = 696
Score = 130 bits (278), Expect = 4e-029
Identities = 46/73 (63%), Positives = 59/73 (80%)
Frame = +3 / +1
Query: 240 KRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDD 419
K+K+IKNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++FD+ +I DD
Sbjct: 1 KQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDSFIITDD 180
Query: 420 PEYARKVVEETWG 458
P A+ EETWG
Sbjct: 181 PALAKTFAEETWG 219
>gb|CD204455.1|CD204455 HS1_8_G10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_8_G10_A012 3', mRNA sequence
Length = 586
Score = 118 bits (253), Expect(2) = 5e-029
Identities = 43/88 (48%), Positives = 60/88 (68%)
Frame = +3 / +1
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEV 368
G W+ M+ NP +KG WK +RI NP YKG+W P I NP+++ + +LY K + +E+
Sbjct: 79 GEWEAPMIPNPEFKGEWKPRRIPNPAYKGEWVHPKIANPDYKPNAELYAYDSFKTVAVEI 258
Query: 369 WQVKAGSVFDNILICDDPEYARKVVEET 452
WQVKAGS+FDNI+I D E AR+ +ET
Sbjct: 259 WQVKAGSIFDNIIITDSEEEAREFAKET 342
Score = 30.9 bits (61), Expect(2) = 5e-029
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 24 PRKIKDVHAKRPKDWDD 74
P +I D AK+P+DWDD
Sbjct: 19 PAEIVDPEAKKPEDWDD 69
>gb|CD228492.1|CD228492 CCC1_8_G08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_G08_A007 3', mRNA sequence
Length = 649
Score = 124 bits (266), Expect = 2e-027
Identities = 44/68 (64%), Positives = 54/68 (79%)
Frame = +3 / +3
Query: 255 KNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYAR 434
KNPNY+GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++FDN +I DDP A+
Sbjct: 3 KNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFIITDDPALAK 182
Query: 435 KVVEETWG 458
EETWG
Sbjct: 183 TFAEETWG 206
>gb|CD235683.1|CD235683 SS1_37_D06.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_D06_A012 3', mRNA sequence
Length = 588
Score = 62.9 bits (131), Expect(3) = 2e-026
Identities = 24/41 (58%), Positives = 25/41 (60%)
Frame = +3 / +3
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEF 311
G WK M NPAYKG W I NPNYKG WK I NPE+
Sbjct: 153 GEWKRPMKQNPAYKGKWHAPMIDNPNYKGIWKPQEIPNPEY 275
Score = 54.2 bits (112), Expect(3) = 2e-026
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +3 / +3
Query: 342 PLKYIGIEVWQVKAGSVFDNILICDDPEYARKVVEETW 455
P+ IGIE+W ++ G +FDNILI DD + A ++E+TW
Sbjct: 303 PIAAIGIEIWTMQDGILFDNILIADDEKVAPSILEKTW 416
Score = 41.8 bits (85), Expect(3) = 2e-026
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3 / +3
Query: 51 KRPKDWDDREYIEDPDEVKPEGY 119
K+P+DWD+R I DPD VKPE +
Sbjct: 12 KKPEDWDERAKIPDPDAVKPEDW 80
>gb|CF426998.1|CF426998 PH1_3_A01.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_3_A01_A002 3', mRNA sequence
Length = 615
Score = 117 bits (251), Expect = 2e-025
Identities = 42/63 (66%), Positives = 53/63 (84%)
Frame = +3 / +1
Query: 270 KGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKVVEE 449
KGKWK P IDNP+F+DDP +Y LK+IGIE+WQVK+G++FDNILI DDPEYA+K+ +
Sbjct: 1 KGKWKAPLIDNPDFKDDPYIYAFDSLKHIGIELWQVKSGTLFDNILITDDPEYAKKLAVD 180
Query: 450 TWG 458
TWG
Sbjct: 181 TWG 189
>gb|BM331709.1|BM331709 PIC1_59_F10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 622
Score = 114 bits (244), Expect = 2e-024
Identities = 44/51 (86%), Positives = 49/51 (96%)
Frame = +3 / +1
Query: 312 EDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKVVEETWGAN 464
EDDPDLYVLKPL+Y+GIEVWQVKAGSVFDNILICDDP+YAR VV+ET+ AN
Sbjct: 1 EDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPDYARHVVDETFAAN 153
>gb|BG355444.1|BG355444 EM1_16_E09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 487
Score = 62.9 bits (131), Expect(3) = 2e-023
Identities = 24/41 (58%), Positives = 25/41 (60%)
Frame = +3 / +2
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEF 311
G WK M NPAYKG W I NPNYKG WK I NPE+
Sbjct: 146 GEWKRPMKQNPAYKGKWHAPMIDNPNYKGIWKPQEIPNPEY 268
Score = 54.7 bits (113), Expect(3) = 2e-023
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +3 / +2
Query: 342 PLKYIGIEVWQVKAGSVFDNILICDDPEYARKVVEETW 455
P+ IGIE+W ++ G +FDNILI DD + A ++E+TW
Sbjct: 296 PIAAIGIEIWTMQDGILFDNILIADDEKVATSILEKTW 409
Score = 31.3 bits (62), Expect(3) = 2e-023
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 24 PRKIKDVHAKRPKDWDDRE 80
P +I D A +P+DWDD E
Sbjct: 29 PEEIDDPEAAKPEDWDDEE 85
>gb|CF486855.1|CF486855 POL1_40_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_40_E06_A002 3', mRNA sequence
Length = 705
Score = 111 bits (237), Expect = 2e-023
Identities = 39/72 (54%), Positives = 53/72 (73%)
Frame = +3 / +2
Query: 243 RKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDP 422
+++ + +GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++FDN +I DDP
Sbjct: 83 KRKSRTRTTQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFIITDDP 262
Query: 423 EYARKVVEETWG 458
A+ EETWG
Sbjct: 263 ALAKTFAEETWG 298
>gb|CF489871.1|CF489871 POL1_61_D02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_D02_A002 3', mRNA sequence
Length = 663
Score = 111 bits (237), Expect = 2e-023
Identities = 39/72 (54%), Positives = 53/72 (73%)
Frame = +3 / +3
Query: 243 RKRIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDP 422
+++ + +GKWK P IDNP+F+DDP +Y LKYIGIE+WQVK+G++FDN +I DDP
Sbjct: 18 KRKSRTRTTQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFIITDDP 197
Query: 423 EYARKVVEETWG 458
A+ EETWG
Sbjct: 198 ALAKTFAEETWG 233
>gb|CW133512.1|CW133512 104_517_11116803_116_34808_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116803, DNA
sequence
Length = 643
Score = 62.9 bits (131), Expect(3) = 3e-023
Identities = 24/41 (58%), Positives = 25/41 (60%)
Frame = +3 / -2
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEF 311
G WK M NPAYKG W I NPNYKG WK I NPE+
Sbjct: 228 GEWKRPMKQNPAYKGKWHAPMIDNPNYKGIWKPQEIPNPEY 106
Score = 47.3 bits (97), Expect(3) = 3e-023
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3 / -2
Query: 15 ILPPRKIKDVHAKRPKDWDDREYIEDPDEVKPEGY 119
++P + I D K+P+DWD+R I DPD VKP+ +
Sbjct: 519 LIPSKTIPDPDDKKPEDWDERAKIPDPDAVKPDDW 415
Score = 41.8 bits (85), Expect(3) = 3e-023
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3 / -2
Query: 342 PLKYIGIEVWQVKAGSVFDNILICDD 419
P+ IGIE+W ++ G +FDNILI DD
Sbjct: 78 PIAAIGIEIWTMQDGILFDNILIADD 1
>gb|CW178060.1|CW178060 104_591_11159361_116_36611_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159361, DNA
sequence
Length = 666
Score = 66.1 bits (138), Expect(2) = 3e-022
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +3 / -3
Query: 372 QVKAGSVFDNILICDDPEYARKVVEETWGAN 464
QVKAGSVFDNILICDDP+YAR VV+ET+ AN
Sbjct: 337 QVKAGSVFDNILICDDPDYARHVVDETFAAN 245
Score = 60.6 bits (126), Expect(2) = 3e-022
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3 / -1
Query: 306 EFEDDPDLYVLKPLKYIGIEVWQV 377
EFEDDPDLYVLKPL+Y+GIEVWQV
Sbjct: 507 EFEDDPDLYVLKPLQYVGIEVWQV 436
>gb|BG558216.1|BG558216 RHIZ2_64_E07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 459
Score = 62.9 bits (131), Expect(3) = 5e-022
Identities = 24/41 (58%), Positives = 25/41 (60%)
Frame = +3 / -1
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEF 311
G WK M NPAYKG W I NPNYKG WK I NPE+
Sbjct: 270 GEWKRPMKQNPAYKGKWHAPMIDNPNYKGIWKPQEIPNPEY 148
Score = 49.6 bits (102), Expect(3) = 5e-022
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +3 / -1
Query: 342 PLKYIGIEVWQVKAGSVFDNILICDDPEYARKVVEET 452
P+ IGIE+W ++ G +FDNILI DD + A ++E+T
Sbjct: 120 PIAAIGIEIWTMQDGILFDNILIADDEKVATSILEKT 10
Score = 31.3 bits (62), Expect(3) = 5e-022
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3 / -1
Query: 24 PRKIKDVHAKRPKDWDDRE 80
P +I D A +P+DWDD E
Sbjct: 387 PEEIDDPEAAKPEDWDDEE 331
>gb|BM322948.1|BM322948 PIC1_15_E04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 570
Score = 60.2 bits (125), Expect(3) = 8e-022
Identities = 23/41 (56%), Positives = 24/41 (58%)
Frame = +3 / +2
Query: 189 GIWKPRMVSNPAYKGPWKRKRIKNPNYKGKWKTPWIDNPEF 311
G WK M NPAYKG W I NPNY G WK I NPE+
Sbjct: 344 GEWKRPMKQNPAYKGKWHAPMIDNPNYXGIWKPQEIPNPEY 466
Score = 47.3 bits (97), Expect(3) = 8e-022
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3 / +2
Query: 15 ILPPRKIKDVHAKRPKDWDDREYIEDPDEVKPEGY 119
++P + I D K+P+DWD+R I DPD VKP+ +
Sbjct: 53 LIPSKTIPDPDDKKPEDWDERAKIPDPDAVKPDDW 157
Score = 39.1 bits (79), Expect(3) = 8e-022
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3 / +2
Query: 342 PLKYIGIEVWQVKAGSVFDNILICD 416
P+ IGIE+W ++ G +FDNILI D
Sbjct: 494 PIAAIGIEIWTMQDGILFDNILIAD 568
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,165,385,149
Number of Sequences: 832831
Number of extensions: 15789134
Number of successful extensions: 69052
Number of sequences better than 1.0e-020: 51
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 36456082959
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)