TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023663.2.1
(613 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG649325.1|BG649325 EM1_78_A04.b1_A002 Embryo 1 (EM1) So... 209 4e-077
gb|BF705313.1|BF705313 RHIZ2_3_E03.g1_A003 Rhizome2 (RHIZ2)... 209 1e-076
gb|BG051657.1|BG051657 FM1_59_E09.g1_A003 Floral-Induced Me... 193 4e-071
gb|BG412672.1|BG412672 OV2_33_C12.b1_A002 Ovary 2 (OV2) Sor... 142 3e-041
gb|AW284556.1|AW284556 LG1_270_F03.g1_A002 Light Grown 1 (L... 100 2e-038
gb|BM329744.1|BM329744 PIC1_42_B03.g1_A002 Pathogen-infecte... 83 5e-035
gb|BG412387.1|BG412387 OV2_33_C12.g1_A002 Ovary 2 (OV2) Sor... 78 5e-033
gb|CW204226.1|CW204226 104_632_11186430_116_36924_029 Sorgh... 62 7e-021
>gb|BG649325.1|BG649325 EM1_78_A04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 209 bits (451), Expect(4) = 4e-076
Identities = 89/105 (84%), Positives = 93/105 (88%)
Frame = +1 / -2
Query: 235 LLVKSIRVVSIRIQGTLRE*FTNVCRMCTGSCRNLF*FFNIFVSSIMQWFLRVRFTKHDR 414
LL KSIRVVSI IQGTLRE*FT VCRMC GSCRNLF F NIFVSSIMQ FL VRFTKHD
Sbjct: 411 LLAKSIRVVSIWIQGTLRE*FTKVCRMCMGSCRNLFYFCNIFVSSIMQRFLSVRFTKHDS 232
Query: 415 APSFPALCDSSICCLNFVFRVGYLSMFRNILRHFLYLSQHVRNW* 549
APSFPALCDSSIC LNF+F + YLSMFRN+LRHFLYLSQ+VRNW*
Sbjct: 231 APSFPALCDSSICSLNFIFMMCYLSMFRNVLRHFLYLSQYVRNW* 97
Score = 203 bits (438), Expect(4) = 2e-071
Identities = 90/107 (84%), Positives = 95/107 (88%)
Frame = +2 / -3
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTFFSFLTSLSVVLCNGF*EFGSPNM 409
++F* KA*GSSAYGFKEPSENNSP FAGCA D VGTFF F+TSLS VLC F* FGSPNM
Sbjct: 416 ITF*PKA*GSSAYGFKEPSENNSPRFAGCAWDPVGTFFIFVTSLSAVLCKDF*VFGSPNM 237
Query: 410 TGLLVFLRFVILPFAVSTSYSGWVTFLCLGIS*DTFSTFLNMFEIGD 550
T LLVFLRFVILPFAVSTSYS VTFLCLG+S*DTFSTFLNMFEIG+
Sbjct: 236 TVLLVFLRFVILPFAVSTSYS*CVTFLCLGMS*DTFSTFLNMFEIGE 96
Score = 199 bits (429), Expect(5) = 4e-077
Identities = 85/106 (80%), Positives = 89/106 (83%)
Frame = -2 / +1
Query: 549 SPISNMLRKVEKVSQDIPKHRKVTHPEYEVETANGRITKRRKTRSPVMFGEPNSQKPLHN 370
SPISN+LRKVEKVSQDIPKHRKVTH EYEVETANGRITKRRKTRS VMFGEPN+QK LHN
Sbjct: 97 SPISNILRKVEKVSQDIPKHRKVTHHEYEVETANGRITKRRKTRSTVMFGEPNTQKSLHN 276
Query: 369 XXXXXXXXXXXVPTRSRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
VPT S AHPAN+GELFSEGSLNPYADDPYAF *K+
Sbjct: 277 TADKDVTKIKKVPTGSHAHPANLGELFSEGSLNPYADDPYAFG*KV 414
Score = 199 bits (428), Expect(4) = 5e-069
Identities = 87/104 (83%), Positives = 91/104 (87%)
Frame = -1 / +3
Query: 547 TNFEHVEKGRESVSGYS*T*KGNPP*IRS*DSKWKNHKAQEN*EPCHVW*TELSETIA*Y 368
TNFEH+EKGRESVSG+S*T*KGN *I S*D KWKNHKAQEN*E CHVW*TE SE A*Y
Sbjct: 99 TNFEHIEKGRESVSGHS*T*KGNTS*I*S*DCKWKNHKAQEN*EHCHVW*TEHSEIFA*Y 278
Query: 367 Y*QRC*KTKKGSYKIPCTSCKHW*IIL*GFLESVC*RPLCF*LE 236
*QRC K KKGSY+IPCTSCK W*IIL*GFLES+C*RPLCF LE
Sbjct: 279 C*QRCYKNKKGSYRIPCTSCKPW*IIL*GFLESIC*RPLCFWLE 410
Score = 197 bits (424), Expect(4) = 1e-063
Identities = 88/104 (84%), Positives = 89/104 (85%)
Frame = +3 / -1
Query: 237 SSQKHKGRQHTDSRNPQRIIHQCLQDVHGIL*EPFLVF*HLCQ*YYAMVSESSVHQT*QG 416
SSQKHKGRQH DSRNPQRIIHQ LQDVHGIL*EPFL *HLCQ YYA +SE SVHQT*Q
Sbjct: 409 SSQKHKGRQHMDSRNPQRIIHQGLQDVHGIL*EPFLFL*HLCQQYYAKISECSVHQT*QC 230
Query: 417 S*FSCAL*FFHLLSQLRIQGGLPFYV*EYPETLSLPFSTCSKLV 548
S*FSCAL*FFHL SQL I LPFYV*E PETLSLPFS CSKLV
Sbjct: 229 S*FSCAL*FFHLQSQLHIHDVLPFYV*ECPETLSLPFSICSKLV 98
Score = 181 bits (389), Expect(4) = 3e-058
Identities = 82/93 (88%), Positives = 85/93 (91%)
Frame = -3 / +2
Query: 548 HQFRTC*ER*RKCLRIFLNIER*PTLNTKLRQQMEESQSAGKLGALSCLVNRTLRNHCII 369
HQFRT *ER*RKCLR FLNIER* +N KLR QMEESQSAGKLGALSCLVNRTLRN CII
Sbjct: 98 HQFRTY*ER*RKCLRTFLNIER*HIMNMKLRLQMEESQSAGKLGALSCLVNRTLRNLCII 277
Query: 368 LLTKMLKN*KRFLQDPVHILQTLVNYSLRVP*I 270
LLTKML+ *KRFLQDP+HILQTLVNYSLRVP*I
Sbjct: 278 LLTKMLQK*KRFLQDPMHILQTLVNYSLRVP*I 376
Score = 48.7 bits (100), Expect(5) = 4e-077
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -1 / +1
Query: 238 EAHAWKYHFCKPDDEFWNTQ 179
+AH WKYH CK DDE WNTQ
Sbjct: 436 KAHTWKYHLCKHDDEIWNTQ 495
Score = 48.7 bits (100), Expect(5) = 4e-077
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -1 / +3
Query: 610 GPVGKSGDQSEGRKLTWDFT 551
GPVGKSGDQ+EG KLTWDFT
Sbjct: 42 GPVGKSGDQTEGCKLTWDFT 101
Score = 47.3 bits (97), Expect(4) = 2e-071
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2 / -3
Query: 554 KIPGKFTSFRLVSGLTNWTS 613
+IPGKFTSFRLVSGL NWTS
Sbjct: 98 EIPGKFTSFRLVSGLANWTS 39
Score = 47.3 bits (97), Expect(4) = 4e-076
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3 / -1
Query: 549 IVKSQVSLRPSDWSPDLPTGP 611
+VKSQVSL PS WSPDLPTGP
Sbjct: 103 LVKSQVSLHPSVWSPDLPTGP 41
Score = 46.4 bits (95), Expect(4) = 4e-076
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3 / -2
Query: 90 RYMSQRQSCTL*WTDDQGKTVGLTQHGGG 176
R+MS+RQSCTL WTD+QG GL GG
Sbjct: 588 RHMSERQSCTLGWTDNQGMVAGLLIQHGG 502
Score = 42.3 bits (86), Expect(4) = 5e-069
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -2 / +1
Query: 612 EVQLVSPETNRKDVNLPGI 556
EVQL SPET RKDVNLPGI
Sbjct: 40 EVQLASPETKRKDVNLPGI 96
Score = 41.8 bits (85), Expect(4) = 5e-069
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -2 / +2
Query: 237 KLTPGSIIFASPMTNSGTPNYHP 169
KLTPGSIIFAS MT SGT N P
Sbjct: 437 KLTPGSIIFASTMTKSGTHNLPP 505
Score = 41.4 bits (84), Expect(5) = 4e-077
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -1 / +2
Query: 175 PPPCWVNPTVFPWSSVHHNVHDCR*LMYL 89
PP NP PW SVH +VHDCR LM L
Sbjct: 503 PPC*INNPATIPWLSVHPSVHDCRSLMCL 589
Score = 40.5 bits (82), Expect(4) = 1e-063
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1 / -2
Query: 553 *NPR*VYVLPIGLRTYQLDL 612
*NPR*VY+LP GLRT QLDL
Sbjct: 99 *NPR*VYILPFGLRTCQLDL 40
Score = 40.5 bits (82), Expect(4) = 4e-076
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1 / -1
Query: 178 IGCSRIRHRACKNDTSRREL 237
I CSR RHRACK+DTSR EL
Sbjct: 496 IVCSRFRHRACKDDTSRCEL 437
Score = 39.1 bits (79), Expect(4) = 3e-058
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3 / +2
Query: 611 RSSW*VRRPIGRT*TYLGFY 552
RSSW VRRP GR *TYLGF+
Sbjct: 41 RSSWQVRRPNGRM*TYLGFH 100
Score = 38.6 bits (78), Expect(4) = 2e-071
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2 / -2
Query: 179 LGVPEFVIGLAKMILPGVSF 238
L VP+FVI LAKMILPGVSF
Sbjct: 495 LCVPDFVIVLAKMILPGVSF 436
Score = 38.2 bits (77), Expect(4) = 2e-071
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -3
Query: 91 DT*VNGSHVHYDGRMTRE 144
DT*VNGSHVH DG++TRE
Sbjct: 587 DT*VNGSHVH*DGQITRE 534
Score = 36.8 bits (74), Expect(4) = 5e-069
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -2 / +3
Query: 156 ILRFFPGHPSIIMYMTAVDSCI 91
IL+ FPG+ SI++YMTAV SC+
Sbjct: 522 ILQPFPGYLSILVYMTAVHSCV 587
Score = 36.3 bits (73), Expect(4) = 3e-058
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -3 / +1
Query: 155 SYGFSLVIRPS*CT*LPLTHVS 90
S SLVI PS*CT*LP THVS
Sbjct: 523 SCNHSLVICPS*CT*LPFTHVS 588
Score = 33.6 bits (67), Expect(4) = 1e-063
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2 / -1
Query: 89 EIHESTAVMYIMMDG*PGKNRRIDPTRGW 175
+ HE TAVMY MD *PG RI + W
Sbjct: 589 QTHE*TAVMYTRMDR*PGNGCRIIDSTRW 503
Score = 30.4 bits (60), Expect(4) = 1e-063
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3 / -3
Query: 177 NWVFQNSSSGLQK*YFQA*A 236
N VFQ SSS LQ+*YFQ *A
Sbjct: 497 NCVFQISSSCLQR*YFQV*A 438
Score = 26.7 bits (52), Expect(5) = 4e-077
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3 / +2
Query: 89 LKYCYCNNHHD 57
LK+CY N HHD
Sbjct: 587 LKHCYRNKHHD 619
Score = 26.7 bits (52), Expect(4) = 3e-058
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -3 / +3
Query: 224 EVSFLQAR*RILEHPI 177
EVS LQAR*R LEH I
Sbjct: 450 EVSSLQAR*RNLEHTI 497
>gb|BF705313.1|BF705313 RHIZ2_3_E03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 573
Score = 209 bits (451), Expect(4) = 8e-071
Identities = 89/105 (84%), Positives = 93/105 (88%)
Frame = +1 / -3
Query: 235 LLVKSIRVVSIRIQGTLRE*FTNVCRMCTGSCRNLF*FFNIFVSSIMQWFLRVRFTKHDR 414
LL KSIRVVSI IQGTLRE*FT VCRMC GSCRNLF F NIFVSSIMQ FL VRFTKHD
Sbjct: 337 LLAKSIRVVSIWIQGTLRE*FTKVCRMCMGSCRNLFYFCNIFVSSIMQRFLSVRFTKHDS 158
Query: 415 APSFPALCDSSICCLNFVFRVGYLSMFRNILRHFLYLSQHVRNW* 549
APSFPALCDSSIC LNF+F + YLSMFRN+LRHFLYLSQ+VRNW*
Sbjct: 157 APSFPALCDSSICSLNFIFMMCYLSMFRNVLRHFLYLSQYVRNW* 23
Score = 203 bits (438), Expect(4) = 1e-065
Identities = 90/107 (84%), Positives = 95/107 (88%)
Frame = +2 / -1
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTFFSFLTSLSVVLCNGF*EFGSPNM 409
++F* KA*GSSAYGFKEPSENNSP FAGCA D VGTFF F+TSLS VLC F* FGSPNM
Sbjct: 342 ITF*PKA*GSSAYGFKEPSENNSPRFAGCAWDPVGTFFIFVTSLSAVLCKDF*VFGSPNM 163
Query: 410 TGLLVFLRFVILPFAVSTSYSGWVTFLCLGIS*DTFSTFLNMFEIGD 550
T LLVFLRFVILPFAVSTSYS VTFLCLG+S*DTFSTFLNMFEIG+
Sbjct: 162 TVLLVFLRFVILPFAVSTSYS*CVTFLCLGMS*DTFSTFLNMFEIGE 22
Score = 199 bits (429), Expect(5) = 1e-076
Identities = 85/106 (80%), Positives = 89/106 (83%)
Frame = -2 / +2
Query: 549 SPISNMLRKVEKVSQDIPKHRKVTHPEYEVETANGRITKRRKTRSPVMFGEPNSQKPLHN 370
SPISN+LRKVEKVSQDIPKHRKVTH EYEVETANGRITKRRKTRS VMFGEPN+QK LHN
Sbjct: 23 SPISNILRKVEKVSQDIPKHRKVTHHEYEVETANGRITKRRKTRSTVMFGEPNTQKSLHN 202
Query: 369 XXXXXXXXXXXVPTRSRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
VPT S AHPAN+GELFSEGSLNPYADDPYAF *K+
Sbjct: 203 TADKDVTKIKKVPTGSHAHPANLGELFSEGSLNPYADDPYAFG*KV 340
Score = 199 bits (428), Expect(3) = 6e-064
Identities = 87/104 (83%), Positives = 91/104 (87%)
Frame = -1 / +1
Query: 547 TNFEHVEKGRESVSGYS*T*KGNPP*IRS*DSKWKNHKAQEN*EPCHVW*TELSETIA*Y 368
TNFEH+EKGRESVSG+S*T*KGN *I S*D KWKNHKAQEN*E CHVW*TE SE A*Y
Sbjct: 25 TNFEHIEKGRESVSGHS*T*KGNTS*I*S*DCKWKNHKAQEN*EHCHVW*TEHSEIFA*Y 204
Query: 367 Y*QRC*KTKKGSYKIPCTSCKHW*IIL*GFLESVC*RPLCF*LE 236
*QRC K KKGSY+IPCTSCK W*IIL*GFLES+C*RPLCF LE
Sbjct: 205 C*QRCYKNKKGSYRIPCTSCKPW*IIL*GFLESIC*RPLCFWLE 336
Score = 197 bits (424), Expect(3) = 2e-061
Identities = 88/104 (84%), Positives = 89/104 (85%)
Frame = +3 / -2
Query: 237 SSQKHKGRQHTDSRNPQRIIHQCLQDVHGIL*EPFLVF*HLCQ*YYAMVSESSVHQT*QG 416
SSQKHKGRQH DSRNPQRIIHQ LQDVHGIL*EPFL *HLCQ YYA +SE SVHQT*Q
Sbjct: 335 SSQKHKGRQHMDSRNPQRIIHQGLQDVHGIL*EPFLFL*HLCQQYYAKISECSVHQT*QC 156
Query: 417 S*FSCAL*FFHLLSQLRIQGGLPFYV*EYPETLSLPFSTCSKLV 548
S*FSCAL*FFHL SQL I LPFYV*E PETLSLPFS CSKLV
Sbjct: 155 S*FSCAL*FFHLQSQLHIHDVLPFYV*ECPETLSLPFSICSKLV 24
Score = 181 bits (389), Expect(3) = 2e-054
Identities = 82/93 (88%), Positives = 85/93 (91%)
Frame = -3 / +3
Query: 548 HQFRTC*ER*RKCLRIFLNIER*PTLNTKLRQQMEESQSAGKLGALSCLVNRTLRNHCII 369
HQFRT *ER*RKCLR FLNIER* +N KLR QMEESQSAGKLGALSCLVNRTLRN CII
Sbjct: 24 HQFRTY*ER*RKCLRTFLNIER*HIMNMKLRLQMEESQSAGKLGALSCLVNRTLRNLCII 203
Query: 368 LLTKMLKN*KRFLQDPVHILQTLVNYSLRVP*I 270
LLTKML+ *KRFLQDP+HILQTLVNYSLRVP*I
Sbjct: 204 LLTKMLQK*KRFLQDPMHILQTLVNYSLRVP*I 302
Score = 66.6 bits (139), Expect(5) = 1e-076
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -1 / +2
Query: 238 EAHAWKYHFCKPDDEFWNTQLPPPCWVN 155
+AH WKYH CK DDE WNTQLPPPC +N
Sbjct: 362 KAHTWKYHLCKHDDEIWNTQLPPPC*IN 445
Score = 48.7 bits (100), Expect(3) = 6e-064
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = -2 / +3
Query: 237 KLTPGSIIFASPMTNSGTPNYHPRVGSIL 151
KLTPGSIIFAS MT SGT NY RV SI+
Sbjct: 363 KLTPGSIIFASTMTKSGTHNYLHRVESII 449
Score = 46.4 bits (95), Expect(4) = 8e-071
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2 / -3
Query: 149 RRIDPTRGW*LGVPEFVIGLAKMILPGVSF 238
R ID TR *L VP+FVI LAKMILPGVSF
Sbjct: 451 RIIDSTRWR*LCVPDFVIVLAKMILPGVSF 362
Score = 46.4 bits (95), Expect(4) = 8e-071
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3 / -1
Query: 90 RYMSQRQSCTL*WTDDQGKTVGLTQHGGG 176
R+MS+RQSCTL WTD+QG GL GG
Sbjct: 513 RHMSERQSCTLGWTDNQGMVAGLLIQHGG 427
Score = 46.0 bits (94), Expect(4) = 1e-065
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3 / -1
Query: 156 LTQHGGGNWVFQNSSSGLQK*YFQA*A 236
L QHGGGN VFQ SSS LQ+*YFQ *A
Sbjct: 444 LIQHGGGNCVFQISSSCLQR*YFQV*A 364
Score = 45.1 bits (92), Expect(3) = 2e-061
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1 / -2
Query: 163 NTGVVIGCSRIRHRACKNDTSRREL 237
NT VI CSR RHRACK+DTSR EL
Sbjct: 437 NTVEVIVCSRFRHRACKDDTSRCEL 363
Score = 41.4 bits (84), Expect(5) = 1e-076
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -1 / +2
Query: 175 PPPCWVNPTVFPWSSVHHNVHDCR*LMYL 89
PP NP PW SVH +VHDCR LM L
Sbjct: 428 PPC*INNPATIPWLSVHPSVHDCRSLMCL 514
Score = 38.2 bits (77), Expect(4) = 1e-065
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -2
Query: 91 DT*VNGSHVHYDGRMTRE 144
DT*VNGSHVH DG++TRE
Sbjct: 512 DT*VNGSHVH*DGQITRE 459
Score = 36.8 bits (74), Expect(3) = 6e-064
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -2 / +3
Query: 156 ILRFFPGHPSIIMYMTAVDSCI 91
IL+ FPG+ SI++YMTAV SC+
Sbjct: 447 ILQPFPGYLSILVYMTAVHSCV 512
Score = 36.3 bits (73), Expect(3) = 2e-054
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -3 / +1
Query: 155 SYGFSLVIRPS*CT*LPLTHVS 90
S SLVI PS*CT*LP THVS
Sbjct: 448 SCNHSLVICPS*CT*LPFTHVS 513
Score = 35.0 bits (70), Expect(3) = 2e-054
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = -3 / +1
Query: 224 EVSFLQAR*RILEHPITTPVLGQ 156
EVS LQAR*R LEH IT+ VL Q
Sbjct: 376 EVSSLQAR*RNLEHTITSTVLNQ 444
Score = 33.6 bits (67), Expect(3) = 2e-061
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2 / -3
Query: 89 EIHESTAVMYIMMDG*PGKNRRIDPTRGW 175
+ HE TAVMY MD *PG RI + W
Sbjct: 514 QTHE*TAVMYTRMDR*PGNGCRIIDSTRW 428
Score = 32.2 bits (64), Expect(5) = 1e-076
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +2
Query: 89 LKYCYCNNHHDCRI 48
LK+CY N HHDC I
Sbjct: 512 LKHCYRNKHHDCMI 553
Score = 23.5 bits (45), Expect(4) = 8e-071
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 54 TIVMVVAVAILQRY 95
TIVM++AVA+LQ +
Sbjct: 547 TIVMLIAVAMLQTH 506
Score = 23.5 bits (45), Expect(5) = 1e-076
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1 / +1
Query: 577 GRKLTWDFT 551
G KLTWDFT
Sbjct: 1 GCKLTWDFT 27
Score = 21.7 bits (41), Expect(4) = 1e-065
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2 / -2
Query: 50 SDNRDGCCSSNTSE 91
S NRD C SN S+
Sbjct: 551 SYNRDAYCGSNASD 510
>gb|BG051657.1|BG051657 FM1_59_E09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 530
Score = 193 bits (417), Expect(4) = 3e-066
Identities = 83/98 (84%), Positives = 86/98 (87%)
Frame = +1 / -1
Query: 235 LLVKSIRVVSIRIQGTLRE*FTNVCRMCTGSCRNLF*FFNIFVSSIMQWFLRVRFTKHDR 414
LL KSIRVVSI IQGTLRE*FT VCRMC GSCRNLF F NIFVSSIMQ FL VRFTKHD
Sbjct: 299 LLAKSIRVVSIWIQGTLRE*FTKVCRMCMGSCRNLFYFCNIFVSSIMQRFLSVRFTKHDS 120
Query: 415 APSFPALCDSSICCLNFVFRVGYLSMFRNILRHFLYLS 528
APSFPALCDSSIC LNF+F + YLSMFRN+LRHFLYLS
Sbjct: 119 APSFPALCDSSICSLNFIFMMCYLSMFRNVLRHFLYLS 6
Score = 188 bits (404), Expect(4) = 4e-061
Identities = 84/100 (84%), Positives = 88/100 (88%)
Frame = +2 / -2
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTFFSFLTSLSVVLCNGF*EFGSPNM 409
++F* KA*GSSAYGFKEPSENNSP FAGCA D VGTFF F+TSLS VLC F* FGSPNM
Sbjct: 304 ITF*PKA*GSSAYGFKEPSENNSPRFAGCAWDPVGTFFIFVTSLSAVLCKDF*VFGSPNM 125
Query: 410 TGLLVFLRFVILPFAVSTSYSGWVTFLCLGIS*DTFSTFL 529
T LLVFLRFVILPFAVSTSYS VTFLCLG+S*DTFSTFL
Sbjct: 124 TVLLVFLRFVILPFAVSTSYS*CVTFLCLGMS*DTFSTFL 5
Score = 186 bits (401), Expect(4) = 4e-071
Identities = 79/100 (79%), Positives = 83/100 (83%)
Frame = -2 / +3
Query: 531 LRKVEKVSQDIPKHRKVTHPEYEVETANGRITKRRKTRSPVMFGEPNSQKPLHNXXXXXX 352
+RKVEKVSQDIPKHRKVTH EYEVETANGRITKRRKTRS VMFGEPN+QK LHN
Sbjct: 3 MRKVEKVSQDIPKHRKVTHHEYEVETANGRITKRRKTRSTVMFGEPNTQKSLHNTADKDV 182
Query: 351 XXXXXVPTRSRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
VPT S AHPAN+GELFSEGSLNPYADDPYAF *K+
Sbjct: 183 TKIKKVPTGSHAHPANLGELFSEGSLNPYADDPYAFG*KV 302
Score = 185 bits (399), Expect(3) = 6e-058
Identities = 83/98 (84%), Positives = 84/98 (85%)
Frame = +3 / -3
Query: 237 SSQKHKGRQHTDSRNPQRIIHQCLQDVHGIL*EPFLVF*HLCQ*YYAMVSESSVHQT*QG 416
SSQKHKGRQH DSRNPQRIIHQ LQDVHGIL*EPFL *HLCQ YYA +SE SVHQT*Q
Sbjct: 297 SSQKHKGRQHMDSRNPQRIIHQGLQDVHGIL*EPFLFL*HLCQQYYAKISECSVHQT*QC 118
Query: 417 S*FSCAL*FFHLLSQLRIQGGLPFYV*EYPETLSLPFS 530
S*FSCAL*FFHL SQL I LPFYV*E PETLSLPFS
Sbjct: 117 S*FSCAL*FFHLQSQLHIHDVLPFYV*ECPETLSLPFS 4
Score = 183 bits (395), Expect(3) = 2e-059
Identities = 82/98 (83%), Positives = 85/98 (86%)
Frame = -1 / +2
Query: 529 EKGRESVSGYS*T*KGNPP*IRS*DSKWKNHKAQEN*EPCHVW*TELSETIA*YY*QRC* 350
EKGRESVSG+S*T*KGN *I S*D KWKNHKAQEN*E CHVW*TE SE A*Y *QRC
Sbjct: 5 EKGRESVSGHS*T*KGNTS*I*S*DCKWKNHKAQEN*EHCHVW*TEHSEIFA*YC*QRCY 184
Query: 349 KTKKGSYKIPCTSCKHW*IIL*GFLESVC*RPLCF*LE 236
K KKGSY+IPCTSCK W*IIL*GFLES+C*RPLCF LE
Sbjct: 185 KNKKGSYRIPCTSCKPW*IIL*GFLESIC*RPLCFWLE 298
Score = 168 bits (362), Expect(3) = 9e-051
Identities = 77/87 (88%), Positives = 80/87 (91%)
Frame = -3 / +1
Query: 530 *ER*RKCLRIFLNIER*PTLNTKLRQQMEESQSAGKLGALSCLVNRTLRNHCIILLTKML 351
*ER*RKCLR FLNIER* +N KLR QMEESQSAGKLGALSCLVNRTLRN CIILLTKML
Sbjct: 4 *ER*RKCLRTFLNIER*HIMNMKLRLQMEESQSAGKLGALSCLVNRTLRNLCIILLTKML 183
Query: 350 KN*KRFLQDPVHILQTLVNYSLRVP*I 270
+ *KRFLQDP+HILQTLVNYSLRVP*I
Sbjct: 184 QK*KRFLQDPMHILQTLVNYSLRVP*I 264
Score = 66.6 bits (139), Expect(4) = 4e-071
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -1 / +3
Query: 238 EAHAWKYHFCKPDDEFWNTQLPPPCWVN 155
+AH WKYH CK DDE WNTQLPPPC +N
Sbjct: 324 KAHTWKYHLCKHDDEIWNTQLPPPC*IN 407
Score = 48.7 bits (100), Expect(3) = 2e-059
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = -2 / +1
Query: 237 KLTPGSIIFASPMTNSGTPNYHPRVGSIL 151
KLTPGSIIFAS MT SGT NY RV SI+
Sbjct: 325 KLTPGSIIFASTMTKSGTHNYLHRVESII 411
Score = 46.4 bits (95), Expect(4) = 3e-066
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2 / -1
Query: 149 RRIDPTRGW*LGVPEFVIGLAKMILPGVSF 238
R ID TR *L VP+FVI LAKMILPGVSF
Sbjct: 413 RIIDSTRWR*LCVPDFVIVLAKMILPGVSF 324
Score = 46.4 bits (95), Expect(4) = 3e-066
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3 / -2
Query: 90 RYMSQRQSCTL*WTDDQGKTVGLTQHGGG 176
R+MS+RQSCTL WTD+QG GL GG
Sbjct: 475 RHMSERQSCTLGWTDNQGMVAGLLIQHGG 389
Score = 46.0 bits (94), Expect(4) = 4e-061
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +3 / -2
Query: 156 LTQHGGGNWVFQNSSSGLQK*YFQA*A 236
L QHGGGN VFQ SSS LQ+*YFQ *A
Sbjct: 406 LIQHGGGNCVFQISSSCLQR*YFQV*A 326
Score = 45.1 bits (92), Expect(3) = 6e-058
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1 / -3
Query: 163 NTGVVIGCSRIRHRACKNDTSRREL 237
NT VI CSR RHRACK+DTSR EL
Sbjct: 399 NTVEVIVCSRFRHRACKDDTSRCEL 325
Score = 41.4 bits (84), Expect(4) = 4e-071
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -1 / +3
Query: 175 PPPCWVNPTVFPWSSVHHNVHDCR*LMYL 89
PP NP PW SVH +VHDCR LM L
Sbjct: 390 PPC*INNPATIPWLSVHPSVHDCRSLMCL 476
Score = 38.2 bits (77), Expect(4) = 4e-061
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -3
Query: 91 DT*VNGSHVHYDGRMTRE 144
DT*VNGSHVH DG++TRE
Sbjct: 474 DT*VNGSHVH*DGQITRE 421
Score = 36.8 bits (74), Expect(3) = 2e-059
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -2 / +1
Query: 156 ILRFFPGHPSIIMYMTAVDSCI 91
IL+ FPG+ SI++YMTAV SC+
Sbjct: 409 ILQPFPGYLSILVYMTAVHSCV 474
Score = 36.3 bits (73), Expect(3) = 9e-051
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -3 / +2
Query: 155 SYGFSLVIRPS*CT*LPLTHVS 90
S SLVI PS*CT*LP THVS
Sbjct: 410 SCNHSLVICPS*CT*LPFTHVS 475
Score = 35.0 bits (70), Expect(3) = 9e-051
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = -3 / +2
Query: 224 EVSFLQAR*RILEHPITTPVLGQ 156
EVS LQAR*R LEH IT+ VL Q
Sbjct: 338 EVSSLQAR*RNLEHTITSTVLNQ 406
Score = 33.6 bits (67), Expect(3) = 6e-058
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2 / -1
Query: 89 EIHESTAVMYIMMDG*PGKNRRIDPTRGW 175
+ HE TAVMY MD *PG RI + W
Sbjct: 476 QTHE*TAVMYTRMDR*PGNGCRIIDSTRW 390
Score = 32.2 bits (64), Expect(4) = 4e-071
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +3
Query: 89 LKYCYCNNHHDCRI 48
LK+CY N HHDC I
Sbjct: 474 LKHCYRNKHHDCMI 515
Score = 23.5 bits (45), Expect(4) = 3e-066
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / -1
Query: 54 TIVMVVAVAILQRY 95
TIVM++AVA+LQ +
Sbjct: 509 TIVMLIAVAMLQTH 468
Score = 21.7 bits (41), Expect(4) = 4e-061
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2 / -3
Query: 50 SDNRDGCCSSNTSE 91
S NRD C SN S+
Sbjct: 513 SYNRDAYCGSNASD 472
>gb|BG412672.1|BG412672 OV2_33_C12.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 636
Score = 142 bits (305), Expect(2) = 3e-041
Identities = 59/71 (83%), Positives = 63/71 (88%)
Frame = +1 / -2
Query: 337 LF*FFNIFVSSIMQWFLRVRFTKHDRAPSFPALCDSSICCLNFVFRVGYLSMFRNILRHF 516
LF F NIFVSSIMQ FL VRFTKHD APSFPALCDSSIC LNF+F + YLSMFRN+LRHF
Sbjct: 326 LFYFCNIFVSSIMQRFLSVRFTKHDSAPSFPALCDSSICSLNFIFMMCYLSMFRNVLRHF 147
Query: 517 LYLSQHVRNW* 549
LYLSQ+VRNW*
Sbjct: 146 LYLSQYVRNW* 114
Score = 137 bits (294), Expect(2) = 8e-040
Identities = 61/72 (84%), Positives = 64/72 (88%)
Frame = +2 / -3
Query: 335 TFFSFLTSLSVVLCNGF*EFGSPNMTGLLVFLRFVILPFAVSTSYSGWVTFLCLGIS*DT 514
TFF F+TSLS VLC F* FGSPNMT LLVFLRFVILPFAVSTSYS VTFLCLG+S*DT
Sbjct: 328 TFFIFVTSLSAVLCKDF*VFGSPNMTVLLVFLRFVILPFAVSTSYS*CVTFLCLGMS*DT 149
Query: 515 FSTFLNMFEIGD 550
FSTFLNMFEIG+
Sbjct: 148 FSTFLNMFEIGE 113
Score = 134 bits (287), Expect(2) = 3e-039
Identities = 61/72 (84%), Positives = 64/72 (88%)
Frame = -3 / +1
Query: 548 HQFRTC*ER*RKCLRIFLNIER*PTLNTKLRQQMEESQSAGKLGALSCLVNRTLRNHCII 369
HQFRT *ER*RKCLR FLNIER* +N KLR QMEESQSAGKLGALSCLVNRTLRN CII
Sbjct: 115 HQFRTY*ER*RKCLRTFLNIER*HIMNMKLRLQMEESQSAGKLGALSCLVNRTLRNLCII 294
Query: 368 LLTKMLKN*KRF 333
LLTKML+ *KR+
Sbjct: 295 LLTKMLQK*KRY 330
Score = 132 bits (283), Expect(2) = 8e-037
Identities = 55/60 (91%), Positives = 57/60 (95%)
Frame = -2 / +3
Query: 549 SPISNMLRKVEKVSQDIPKHRKVTHPEYEVETANGRITKRRKTRSPVMFGEPNSQKPLHN 370
SPISN+LRKVEKVSQDIPKHRKVTH EYEVETANGRITKRRKTRS VMFGEPN+QK LHN
Sbjct: 114 SPISNILRKVEKVSQDIPKHRKVTHHEYEVETANGRITKRRKTRSTVMFGEPNTQKSLHN 293
Score = 128 bits (275), Expect(2) = 9e-035
Identities = 58/71 (81%), Positives = 60/71 (84%)
Frame = -1 / +2
Query: 547 TNFEHVEKGRESVSGYS*T*KGNPP*IRS*DSKWKNHKAQEN*EPCHVW*TELSETIA*Y 368
TNFEH+EKGRESVSG+S*T*KGN *I S*D KWKNHKAQEN*E CHVW*TE SE A*Y
Sbjct: 116 TNFEHIEKGRESVSGHS*T*KGNTS*I*S*DCKWKNHKAQEN*EHCHVW*TEHSEIFA*Y 295
Query: 367 Y*QRC*KTKKG 335
*QRC K KKG
Sbjct: 296 C*QRCYKNKKG 328
Score = 125 bits (267), Expect(2) = 4e-034
Identities = 57/71 (80%), Positives = 58/71 (81%)
Frame = +3 / -1
Query: 336 PFLVF*HLCQ*YYAMVSESSVHQT*QGS*FSCAL*FFHLLSQLRIQGGLPFYV*EYPETL 515
PFL *HLCQ YYA +SE SVHQT*Q S*FSCAL*FFHL SQL I LPFYV*E PETL
Sbjct: 327 PFLFL*HLCQQYYAKISECSVHQT*QCS*FSCAL*FFHLQSQLHIHDVLPFYV*ECPETL 148
Query: 516 SLPFSTCSKLV 548
SLPFS CSKLV
Sbjct: 147 SLPFSICSKLV 115
Score = 48.7 bits (100), Expect(2) = 3e-039
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -1 / +2
Query: 610 GPVGKSGDQSEGRKLTWDFT 551
GPVGKSGDQ+EG KLTWDFT
Sbjct: 59 GPVGKSGDQTEGCKLTWDFT 118
Score = 47.3 bits (97), Expect(2) = 8e-040
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2 / -3
Query: 554 KIPGKFTSFRLVSGLTNWTS 613
+IPGKFTSFRLVSGL NWTS
Sbjct: 115 EIPGKFTSFRLVSGLANWTS 56
Score = 47.3 bits (97), Expect(2) = 3e-041
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3 / -1
Query: 549 IVKSQVSLRPSDWSPDLPTGP 611
+VKSQVSL PS WSPDLPTGP
Sbjct: 120 LVKSQVSLHPSVWSPDLPTGP 58
Score = 42.3 bits (86), Expect(2) = 8e-037
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -2 / +3
Query: 612 EVQLVSPETNRKDVNLPGI 556
EVQL SPET RKDVNLPGI
Sbjct: 57 EVQLASPETKRKDVNLPGI 113
Score = 40.5 bits (82), Expect(2) = 4e-034
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1 / -2
Query: 553 *NPR*VYVLPIGLRTYQLDL 612
*NPR*VY+LP GLRT QLDL
Sbjct: 116 *NPR*VYILPFGLRTCQLDL 57
Score = 39.1 bits (79), Expect(2) = 9e-035
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3 / +1
Query: 611 RSSW*VRRPIGRT*TYLGFY 552
RSSW VRRP GR *TYLGF+
Sbjct: 58 RSSWQVRRPNGRM*TYLGFH 117
>gb|AW284556.1|AW284556 LG1_270_F03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 546
Score = 100 bits (214), Expect(4) = 1e-037
Identities = 42/47 (89%), Positives = 42/47 (89%)
Frame = +3 / -1
Query: 237 SSQKHKGRQHTDSRNPQRIIHQCLQDVHGIL*EPFLVF*HLCQ*YYA 377
SSQKHKGRQH DSRNPQRIIHQ LQDVHGIL*EPFL *HLCQ YYA
Sbjct: 144 SSQKHKGRQHMDSRNPQRIIHQGLQDVHGIL*EPFLFL*HLCQQYYA 4
Score = 94.5 bits (200), Expect(4) = 3e-032
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +2 / -3
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTFFSFLTSLSVVLC 376
++F* KA*GSSAYGFKEPSENNSP FAGCA D VGTFF F+TSLS VLC
Sbjct: 151 ITF*PKA*GSSAYGFKEPSENNSPRFAGCAWDPVGTFFIFVTSLSAVLC 5
Score = 94.5 bits (200), Expect(4) = 2e-038
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = -1 / +2
Query: 376 A*YY*QRC*KTKKGSYKIPCTSCKHW*IIL*GFLESVC*RPLCF*LE 236
A*Y *QRC K KKGSY+IPCTSCK W*IIL*GFLES+C*RPLCF LE
Sbjct: 5 A*YC*QRCYKNKKGSYRIPCTSCKPW*IIL*GFLESIC*RPLCFWLE 145
Score = 93.6 bits (198), Expect(3) = 2e-026
Identities = 42/48 (87%), Positives = 42/48 (87%)
Frame = +1 / -2
Query: 235 LLVKSIRVVSIRIQGTLRE*FTNVCRMCTGSCRNLF*FFNIFVSSIMQ 378
LL KSIRVVSI IQGTLRE*FT VCRMC GSCRNLF F NIFVSSIMQ
Sbjct: 146 LLAKSIRVVSIWIQGTLRE*FTKVCRMCMGSCRNLFYFCNIFVSSIMQ 3
Score = 78.0 bits (164), Expect(3) = 4e-026
Identities = 33/49 (67%), Positives = 35/49 (71%)
Frame = -2 / +3
Query: 378 LHNXXXXXXXXXXXVPTRSRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
LHN VPT S AHPAN+GELFSEGSLNPYADDPYAF *K+
Sbjct: 3 LHNTADKDVTKIKKVPTGSHAHPANLGELFSEGSLNPYADDPYAFG*KV 149
Score = 76.7 bits (161), Expect(3) = 4e-021
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = -3 / +1
Query: 377 CIILLTKMLKN*KRFLQDPVHILQTLVNYSLRVP*I 270
CIILLTKML+ *KRFLQDP+HILQTLVNYSLRVP*I
Sbjct: 4 CIILLTKMLQK*KRFLQDPMHILQTLVNYSLRVP*I 111
Score = 48.7 bits (100), Expect(4) = 2e-038
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -1 / +3
Query: 238 EAHAWKYHFCKPDDEFWNTQ 179
+AH WKYH CK DDE WNTQ
Sbjct: 171 KAHTWKYHLCKHDDEIWNTQ 230
Score = 46.4 bits (95), Expect(4) = 1e-037
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3 / -2
Query: 90 RYMSQRQSCTL*WTDDQGKTVGLTQHGGG 176
R+MS+RQSCTL WTD+QG GL GG
Sbjct: 323 RHMSERQSCTLGWTDNQGMVAGLLIQHGG 237
Score = 41.8 bits (85), Expect(3) = 4e-026
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -2 / +1
Query: 237 KLTPGSIIFASPMTNSGTPNYHP 169
KLTPGSIIFAS MT SGT N P
Sbjct: 172 KLTPGSIIFASTMTKSGTHNLPP 240
Score = 41.4 bits (84), Expect(4) = 2e-038
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -1 / +1
Query: 175 PPPCWVNPTVFPWSSVHHNVHDCR*LMYL 89
PP NP PW SVH +VHDCR LM L
Sbjct: 238 PPC*INNPATIPWLSVHPSVHDCRSLMCL 324
Score = 40.5 bits (82), Expect(4) = 1e-037
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1 / -1
Query: 178 IGCSRIRHRACKNDTSRREL 237
I CSR RHRACK+DTSR EL
Sbjct: 231 IVCSRFRHRACKDDTSRCEL 172
Score = 38.6 bits (78), Expect(4) = 3e-032
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2 / -2
Query: 179 LGVPEFVIGLAKMILPGVSF 238
L VP+FVI LAKMILPGVSF
Sbjct: 230 LCVPDFVIVLAKMILPGVSF 171
Score = 38.2 bits (77), Expect(4) = 3e-032
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -3
Query: 91 DT*VNGSHVHYDGRMTRE 144
DT*VNGSHVH DG++TRE
Sbjct: 322 DT*VNGSHVH*DGQITRE 269
Score = 36.8 bits (74), Expect(3) = 4e-026
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -2 / +2
Query: 156 ILRFFPGHPSIIMYMTAVDSCI 91
IL+ FPG+ SI++YMTAV SC+
Sbjct: 257 ILQPFPGYLSILVYMTAVHSCV 322
Score = 36.3 bits (73), Expect(3) = 4e-021
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -3 / +3
Query: 155 SYGFSLVIRPS*CT*LPLTHVS 90
S SLVI PS*CT*LP THVS
Sbjct: 258 SCNHSLVICPS*CT*LPFTHVS 323
Score = 33.6 bits (67), Expect(3) = 2e-026
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2 / -1
Query: 89 EIHESTAVMYIMMDG*PGKNRRIDPTRGW 175
+ HE TAVMY MD *PG RI + W
Sbjct: 324 QTHE*TAVMYTRMDR*PGNGCRIIDSTRW 238
Score = 31.8 bits (63), Expect(4) = 2e-038
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +1
Query: 89 LKYCYCNNHHDCRI 48
LK+CY N HHDC I
Sbjct: 322 LKHCYRNKHHDCLI 363
Score = 30.4 bits (60), Expect(3) = 2e-026
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3 / -3
Query: 177 NWVFQNSSSGLQK*YFQA*A 236
N VFQ SSS LQ+*YFQ *A
Sbjct: 232 NCVFQISSSCLQR*YFQV*A 173
Score = 26.7 bits (52), Expect(3) = 4e-021
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -3 / +2
Query: 224 EVSFLQAR*RILEHPI 177
EVS LQAR*R LEH I
Sbjct: 185 EVSSLQAR*RNLEHTI 232
Score = 25.8 bits (50), Expect(4) = 1e-037
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -3
Query: 50 SDNRDGCCSSNTSE 91
SDNRD C SN S+
Sbjct: 361 SDNRDAYCGSNASD 320
Score = 23.5 bits (45), Expect(4) = 3e-032
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / -1
Query: 54 TIVMVVAVAILQRY 95
TIVM++AVA+LQ +
Sbjct: 357 TIVMLIAVAMLQTH 316
>gb|BM329744.1|BM329744 PIC1_42_B03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 519
Score = 82.6 bits (174), Expect(4) = 2e-032
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +3 / -3
Query: 237 SSQKHKGRQHTDSRNPQRIIHQCLQDVHGIL*EPFL 344
SSQKHKGRQH DSRNPQRIIHQ LQDVHGIL*EPFL
Sbjct: 118 SSQKHKGRQHMDSRNPQRIIHQGLQDVHGIL*EPFL 11
Score = 82.6 bits (174), Expect(4) = 5e-035
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = -1 / +3
Query: 349 KTKKGSYKIPCTSCKHW*IIL*GFLESVC*RPLCF*LE 236
K KKGSY+IPCTSCK W*IIL*GFLES+C*RPLCF LE
Sbjct: 6 KNKKGSYRIPCTSCKPW*IIL*GFLESIC*RPLCFWLE 119
Score = 79.0 bits (166), Expect(4) = 1e-027
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = +2 / -2
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTFFSFL 352
++F* KA*GSSAYGFKEPSENNSP FAGCA D VGTFF F+
Sbjct: 125 ITF*PKA*GSSAYGFKEPSENNSPRFAGCAWDPVGTFFIFV 3
Score = 75.3 bits (158), Expect(3) = 5e-021
Identities = 33/38 (86%), Positives = 33/38 (86%)
Frame = +1 / -1
Query: 235 LLVKSIRVVSIRIQGTLRE*FTNVCRMCTGSCRNLF*F 348
LL KSIRVVSI IQGTLRE*FT VCRMC GSCRNLF F
Sbjct: 120 LLAKSIRVVSIWIQGTLRE*FTKVCRMCMGSCRNLFYF 7
Score = 73.9 bits (155), Expect(3) = 6e-025
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = -2 / +1
Query: 333 PTRSRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
PT S AHPAN+GELFSEGSLNPYADDPYAF *K+
Sbjct: 22 PTGSHAHPANLGELFSEGSLNPYADDPYAFG*KV 123
Score = 48.7 bits (100), Expect(4) = 5e-035
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -1 / +1
Query: 238 EAHAWKYHFCKPDDEFWNTQ 179
+AH WKYH CK DDE WNTQ
Sbjct: 145 KAHTWKYHLCKHDDEIWNTQ 204
Score = 46.4 bits (95), Expect(4) = 2e-032
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3 / -1
Query: 90 RYMSQRQSCTL*WTDDQGKTVGLTQHGGG 176
R+MS+RQSCTL WTD+QG GL GG
Sbjct: 297 RHMSERQSCTLGWTDNQGMVAGLLIQHGG 211
Score = 41.8 bits (85), Expect(3) = 6e-025
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -2 / +2
Query: 237 KLTPGSIIFASPMTNSGTPNYHP 169
KLTPGSIIFAS MT SGT N P
Sbjct: 146 KLTPGSIIFASTMTKSGTHNLPP 214
Score = 41.4 bits (84), Expect(4) = 5e-035
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -1 / +2
Query: 175 PPPCWVNPTVFPWSSVHHNVHDCR*LMYL 89
PP NP PW SVH +VHDCR LM L
Sbjct: 212 PPC*INNPATIPWLSVHPSVHDCRSLMCL 298
Score = 40.5 bits (82), Expect(4) = 2e-032
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1 / -3
Query: 178 IGCSRIRHRACKNDTSRREL 237
I CSR RHRACK+DTSR EL
Sbjct: 205 IVCSRFRHRACKDDTSRCEL 146
Score = 38.6 bits (78), Expect(4) = 1e-027
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2 / -1
Query: 179 LGVPEFVIGLAKMILPGVSF 238
L VP+FVI LAKMILPGVSF
Sbjct: 204 LCVPDFVIVLAKMILPGVSF 145
Score = 38.2 bits (77), Expect(4) = 1e-027
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -2
Query: 91 DT*VNGSHVHYDGRMTRE 144
DT*VNGSHVH DG++TRE
Sbjct: 296 DT*VNGSHVH*DGQITRE 243
Score = 36.8 bits (74), Expect(3) = 6e-025
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -2 / +3
Query: 156 ILRFFPGHPSIIMYMTAVDSCI 91
IL+ FPG+ SI++YMTAV SC+
Sbjct: 231 ILQPFPGYLSILVYMTAVHSCV 296
Score = 33.6 bits (67), Expect(3) = 5e-021
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2 / -3
Query: 89 EIHESTAVMYIMMDG*PGKNRRIDPTRGW 175
+ HE TAVMY MD *PG RI + W
Sbjct: 298 QTHE*TAVMYTRMDR*PGNGCRIIDSTRW 212
Score = 31.8 bits (63), Expect(4) = 5e-035
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +2
Query: 89 LKYCYCNNHHDCRI 48
LK+CY N HHDC I
Sbjct: 296 LKHCYRNKHHDCLI 337
Score = 30.4 bits (60), Expect(3) = 5e-021
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3 / -2
Query: 177 NWVFQNSSSGLQK*YFQA*A 236
N VFQ SSS LQ+*YFQ *A
Sbjct: 206 NCVFQISSSCLQR*YFQV*A 147
Score = 25.8 bits (50), Expect(4) = 2e-032
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -2
Query: 50 SDNRDGCCSSNTSE 91
SDNRD C SN S+
Sbjct: 335 SDNRDAYCGSNASD 294
Score = 23.5 bits (45), Expect(4) = 1e-027
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 54 TIVMVVAVAILQRY 95
TIVM++AVA+LQ +
Sbjct: 331 TIVMLIAVAMLQTH 290
>gb|BG412387.1|BG412387 OV2_33_C12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 700
Score = 78.0 bits (164), Expect(4) = 5e-031
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = +3 / -2
Query: 237 SSQKHKGRQHTDSRNPQRIIHQCLQDVHGIL*EP 338
SSQKHKGRQH DSRNPQRIIHQ LQDVHGIL*EP
Sbjct: 414 SSQKHKGRQHMDSRNPQRIIHQGLQDVHGIL*EP 313
Score = 75.8 bits (159), Expect(4) = 5e-033
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = -1 / +2
Query: 337 GSYKIPCTSCKHW*IIL*GFLESVC*RPLCF*LE 236
GSY+IPCTSCK W*IIL*GFLES+C*RPLCF LE
Sbjct: 314 GSYRIPCTSCKPW*IIL*GFLESIC*RPLCFWLE 415
Score = 73.9 bits (155), Expect(3) = 6e-025
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = -2 / +3
Query: 333 PTRSRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
PT S AHPAN+GELFSEGSLNPYADDPYAF *K+
Sbjct: 318 PTGSHAHPANLGELFSEGSLNPYADDPYAFG*KV 419
Score = 71.6 bits (150), Expect(4) = 1e-025
Identities = 31/35 (88%), Positives = 31/35 (88%)
Frame = +1 / -3
Query: 235 LLVKSIRVVSIRIQGTLRE*FTNVCRMCTGSCRNL 339
LL KSIRVVSI IQGTLRE*FT VCRMC GSCRNL
Sbjct: 416 LLAKSIRVVSIWIQGTLRE*FTKVCRMCMGSCRNL 312
Score = 48.7 bits (100), Expect(4) = 5e-033
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -1 / +3
Query: 238 EAHAWKYHFCKPDDEFWNTQ 179
+AH WKYH CK DDE WNTQ
Sbjct: 441 KAHTWKYHLCKHDDEIWNTQ 500
Score = 46.4 bits (95), Expect(4) = 5e-031
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3 / -3
Query: 90 RYMSQRQSCTL*WTDDQGKTVGLTQHGGG 176
R+MS+RQSCTL WTD+QG GL GG
Sbjct: 593 RHMSERQSCTLGWTDNQGMVAGLLIQHGG 507
Score = 41.8 bits (85), Expect(3) = 6e-025
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -2 / +1
Query: 237 KLTPGSIIFASPMTNSGTPNYHP 169
KLTPGSIIFAS MT SGT N P
Sbjct: 442 KLTPGSIIFASTMTKSGTHNLPP 510
Score = 41.4 bits (84), Expect(4) = 5e-033
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -1 / +1
Query: 175 PPPCWVNPTVFPWSSVHHNVHDCR*LMYL 89
PP NP PW SVH +VHDCR LM L
Sbjct: 508 PPC*INNPATIPWLSVHPSVHDCRSLMCL 594
Score = 40.5 bits (82), Expect(4) = 5e-031
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1 / -2
Query: 178 IGCSRIRHRACKNDTSRREL 237
I CSR RHRACK+DTSR EL
Sbjct: 501 IVCSRFRHRACKDDTSRCEL 442
Score = 38.6 bits (78), Expect(4) = 1e-025
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2 / -3
Query: 179 LGVPEFVIGLAKMILPGVSF 238
L VP+FVI LAKMILPGVSF
Sbjct: 500 LCVPDFVIVLAKMILPGVSF 441
Score = 38.2 bits (77), Expect(4) = 1e-025
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / -1
Query: 91 DT*VNGSHVHYDGRMTRE 144
DT*VNGSHVH DG++TRE
Sbjct: 592 DT*VNGSHVH*DGQITRE 539
Score = 36.8 bits (74), Expect(3) = 6e-025
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -2 / +2
Query: 156 ILRFFPGHPSIIMYMTAVDSCI 91
IL+ FPG+ SI++YMTAV SC+
Sbjct: 527 ILQPFPGYLSILVYMTAVHSCV 592
Score = 31.8 bits (63), Expect(4) = 5e-033
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +1
Query: 89 LKYCYCNNHHDCRI 48
LK+CY N HHDC I
Sbjct: 592 LKHCYRNKHHDCLI 633
Score = 25.8 bits (50), Expect(4) = 5e-031
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -1
Query: 50 SDNRDGCCSSNTSE 91
SDNRD C SN S+
Sbjct: 631 SDNRDAYCGSNASD 590
Score = 23.5 bits (45), Expect(4) = 1e-025
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / -2
Query: 54 TIVMVVAVAILQRY 95
TIVM++AVA+LQ +
Sbjct: 627 TIVMLIAVAMLQTH 586
>gb|CW204226.1|CW204226 104_632_11186430_116_36924_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186430, DNA
sequence
Length = 643
Score = 62.5 bits (130), Expect(3) = 7e-021
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = -2 / +3
Query: 483 VTHPEYEVETANGRITKRRKTRSPVMFG 400
VTH EYEVETANGRITKRRKTRS VMFG
Sbjct: 168 VTHHEYEVETANGRITKRRKTRSTVMFG 251
Score = 42.8 bits (87), Expect(3) = 7e-021
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -3 / +3
Query: 398 NRTLRNHCIILLTKMLKN*KRF 333
NRTLRN CIILLTKML+ *KR+
Sbjct: 339 NRTLRNLCIILLTKMLQK*KRY 404
Score = 33.6 bits (67), Expect(3) = 7e-021
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -2 / +1
Query: 519 EKVSQDIPKHRKV 481
EKVSQDIPKHRKV
Sbjct: 1 EKVSQDIPKHRKV 39
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 768,669,634
Number of Sequences: 832831
Number of extensions: 11008315
Number of successful extensions: 83101
Number of sequences better than 1.0e-020: 8
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17946976950
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)