TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969966.2.1
(1029 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF704862.1|BF704862 FM1_52_D11.b1_A003 Floral-Induced Me... 344 1e-093
gb|BF588107.1|BF588107 FM1_37_G09.b1_A003 Floral-Induced Me... 343 3e-093
gb|BF480910.1|BF480910 FM1_14_H03.b1_A003 Floral-Induced Me... 281 2e-074
gb|CW425067.1|CW425067 fsbb001f135m01f0 Sorghum methylation... 190 1e-057
gb|CW425068.1|CW425068 fsbb001f135m01k0 Sorghum methylation... 214 9e-057
gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2... 121 4e-045
gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infecte... 121 6e-044
gb|BM324094.1|BM324094 PIC1_24_B06.b1_A002 Pathogen-infecte... 144 2e-039
gb|BG412918.1|BG412918 OV2_36_E05.b1_A002 Ovary 2 (OV2) Sor... 115 1e-038
gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sor... 120 3e-038
gb|CW139790.1|CW139790 104_530_11135433_148_34916_045 Sorgh... 78 5e-037
gb|CL164957.1|CL164957 104_359_10808265_114_31816_249 Sorgh... 79 3e-036
gb|CW154631.1|CW154631 104_556_11145702_148_36352_017 Sorgh... 99 5e-036
gb|CW187056.1|CW187056 104_605_11166892_116_36720_012 Sorgh... 99 6e-036
gb|BF481720.1|BF481720 FM1_21_E10.b1_A003 Floral-Induced Me... 88 4e-034
gb|CL164958.1|CL164958 104_359_10808265_116_31817_249 Sorgh... 79 2e-033
gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Me... 73 1e-032
gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Me... 73 1e-032
gb|BM325683.1|BM325683 PIC1_47_E07.b1_A002 Pathogen-infecte... 93 1e-032
gb|BM325852.1|BM325852 PIC1_53_F03.b1_A002 Pathogen-infecte... 93 1e-032
gb|BZ343273.1|BZ343273 ho53a08.b1 WGS-SbicolorF (JM107 adap... 90 2e-031
gb|CW248865.1|CW248865 104_710_11222538_148_35036_073 Sorgh... 79 4e-030
gb|CW154630.1|CW154630 104_556_11145702_116_36351_017 Sorgh... 132 1e-029
gb|CW187057.1|CW187057 104_605_11166892_148_36719_012 Sorgh... 132 1e-029
gb|CW241828.1|CW241828 104_701_11218990_148_37557_093 Sorgh... 132 1e-029
gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/c... 63 3e-028
gb|BI643705.1|BI643705 IP1_56_A06.b1_A002 Immature pannicle... 122 1e-026
gb|CW139789.1|CW139789 104_530_11135433_116_34912_045 Sorgh... 79 4e-026
gb|BM322337.1|BM322337 PIC1_3_D06.b1_A002 Pathogen-infected... 79 4e-026
gb|AW563919.1|AW563919 LG1_275_E08.b1_A002 Light Grown 1 (L... 84 1e-022
>gb|BF704862.1|BF704862 FM1_52_D11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 512
Score = 344 bits (746), Expect = 1e-093
Identities = 140/166 (84%), Positives = 149/166 (89%)
Frame = +3 / +3
Query: 57 VAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTI 236
VAGDSVLFIWN+ NQLLLGIR A RPQTVMPSSVLSSDSMHIGLL TNSRFTI
Sbjct: 9 VAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTI 188
Query: 237 FYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPV 416
FYNPRASP EFVIP++KY+KAV+HTRISVGMRFRMLFETEESSVRRYMGTIT +SD DPV
Sbjct: 189 FYNPRASPCEFVIPMAKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPV 368
Query: 417 RWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPL 554
RWP+S+WRSVKVGWDESTAGE+ PRVSLWEIEPLTTFPMYPS F L
Sbjct: 369 RWPNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPFAL 506
Score = 226 bits (489), Expect = 3e-058
Identities = 106/162 (65%), Positives = 117/162 (72%)
Frame = -3 / -2
Query: 541 DGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTL 362
DGYIGKVV+GSIS R+TLG SPAVDSS PTFT+ Q E GQRTGS SL VIVPM TL
Sbjct: 493 DGYIGKVVNGSISQRDTLGCFSPAVDSSHPTFTERQCEFGQRTGSRSLIPVIVPM*RLTL 314
Query: 361 DSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSP 182
DSSVS +I R+PTDIRV TAL Y G+TNS GLALGL*KIV RLFV A P
Sbjct: 313 DSSVSKSIRKRMPTDIRVWYTALTYLAMGMTNSQGLALGL*KIVNRLFVDAA*AAAASRP 134
Query: 181 MCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPAT 56
+CMLSLE T++G+TVCG A IP SW SF + TESPAT
Sbjct: 133 ICMLSLESTDDGMTVCGLFARRIPRSSWLLSFQIKRTESPAT 8
Score = 149 bits (321), Expect = 5e-035
Identities = 66/167 (39%), Positives = 100/167 (59%)
Frame = -2 / -1
Query: 557 SQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHFCYCPH 378
S+ ++ W+H K CQW N P+R S * +P+NL+*+P+ P + + IT+ C CPH
Sbjct: 509 SKSKRRWVHWKSCQWFNLPKRYPWLLLSSS*LVPSNLY*APVRVWPANRIEITYSCNCPH 330
Query: 377 VPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXXXXXXX 198
V T FL LK HPE+H + Y + +S DV GY+KF C IIEN + A+
Sbjct: 329 VTPYTGFLCLKKHPETHAHRYTGMVHSFDVLSHGYDKFTRACSWIIENSKPAIC*CSMSC 150
Query: 197 XCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSN 57
K++++HA+TRK H SLW ++S+++LV +IP + R++SN
Sbjct: 149 CSKQTNMHAITRKY**WHDSLWSVCPTNSQKQLVVVIPDKKDRVASN 9
Score = 141 bits (303), Expect = 1e-032
Identities = 67/161 (41%), Positives = 95/161 (59%)
Frame = +2 / +2
Query: 59 CWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHRTPCSSSSCCCNKQPLHNF 238
CWR C ++E*++PA + N + T+C A+ +F * HA+ + C SSSCC NK P++ F
Sbjct: 11 CWRLCPFYLE*QQPAASGNSSGKQTTNCHAIISTF***HAYWSACCSSSCCINK*PVYYF 190
Query: 239 L*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCPQVHGDNNRSE*C*PSA 418
L*S K IC+T + Q C + I A D *D GI+C +HGDN R++* +
Sbjct: 191 L*SKSKPL*ICHTHG*VRQSCVPYPYICGHAFPDAF*DRGIQCKALHGDNYRNK*SRSCS 370
Query: 419 LA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSI 541
LA L +S+GW+G +N R+A S+G+* DN S V I
Sbjct: 371 LAKLALALSKGWMGRVNCWREAAKGISLGD*TIDNFSNVPI 493
>gb|BF588107.1|BF588107 FM1_37_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 503
Score = 343 bits (743), Expect = 3e-093
Identities = 139/164 (84%), Positives = 148/164 (90%)
Frame = +3 / +3
Query: 57 VAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTI 236
VAGDSVLFIWN+ NQLLLGIR A RPQTVMPSSVLSSDSMHIGLL TNSRFTI
Sbjct: 9 VAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTI 188
Query: 237 FYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPV 416
FYNPRASP EFVIP++KY+KAV+HTRISVGMRFRMLFETEESSVRRYMGTIT +SD DPV
Sbjct: 189 FYNPRASPCEFVIPMAKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPV 368
Query: 417 RWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLF 548
RWP+S+WRSVKVGWDESTAGE+ PRVSLWEIEPLTTFPMYPS F
Sbjct: 369 RWPNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPF 500
Score = 226 bits (489), Expect = 3e-058
Identities = 106/162 (65%), Positives = 117/162 (72%)
Frame = -3 / -2
Query: 541 DGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTL 362
DGYIGKVV+GSIS R+TLG SPAVDSS PTFT+ Q E GQRTGS SL VIVPM TL
Sbjct: 493 DGYIGKVVNGSISQRDTLGCFSPAVDSSHPTFTERQCEFGQRTGSRSLIPVIVPM*RLTL 314
Query: 361 DSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSP 182
DSSVS +I R+PTDIRV TAL Y G+TNS GLALGL*KIV RLFV A P
Sbjct: 313 DSSVSKSIRKRMPTDIRVWYTALTYLAMGMTNSQGLALGL*KIVNRLFVDAA*AAAASRP 134
Query: 181 MCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPAT 56
+CMLSLE T++G+TVCG A IP SW SF + TESPAT
Sbjct: 133 ICMLSLESTDDGMTVCGLFARRIPRSSWLLSFQIKRTESPAT 8
Score = 149 bits (319), Expect = 9e-035
Identities = 65/161 (40%), Positives = 96/161 (59%)
Frame = -2 / -1
Query: 539 WIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHFCYCPHVPADT* 360
W+H K CQW N P+R S * +P+NL+*+P+ P + + IT+ C CPHV T
Sbjct: 491 WVHWKSCQWFNLPKRYPWLLLSSS*LVPSNLY*APVRVWPANRIEITYSCNCPHVTPYTG 312
Query: 359 FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXXXXXXXXCKESD 180
FL LK HPE+H + Y + +S DV GY+KF C IIEN + A+ K+++
Sbjct: 311 FLCLKKHPETHAHRYTGMVHSFDVLSHGYDKFTRACSWIIENSKPAIC*CSMSCCSKQTN 132
Query: 179 VHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSN 57
+HA+TRK H SLW ++S+++LV +IP + R++SN
Sbjct: 131 MHAITRKY**WHDSLWSVCPTNSQKQLVVVIPDKKDRVASN 9
Score = 141 bits (303), Expect = 1e-032
Identities = 67/161 (41%), Positives = 95/161 (59%)
Frame = +2 / +2
Query: 59 CWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHRTPCSSSSCCCNKQPLHNF 238
CWR C ++E*++PA + N + T+C A+ +F * HA+ + C SSSCC NK P++ F
Sbjct: 11 CWRLCPFYLE*QQPAASGNSSGKQTTNCHAIISTF***HAYWSACCSSSCCINK*PVYYF 190
Query: 239 L*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCPQVHGDNNRSE*C*PSA 418
L*S K IC+T + Q C + I A D *D GI+C +HGDN R++* +
Sbjct: 191 L*SKSKPL*ICHTHG*VRQSCVPYPYICGHAFPDAF*DRGIQCKALHGDNYRNK*SRSCS 370
Query: 419 LA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSI 541
LA L +S+GW+G +N R+A S+G+* DN S V I
Sbjct: 371 LAKLALALSKGWMGRVNCWREAAKGISLGD*TIDNFSNVPI 493
>gb|BF480910.1|BF480910 FM1_14_H03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 377
Score = 281 bits (607), Expect = 2e-074
Identities = 112/122 (91%), Positives = 115/122 (94%)
Frame = -2 / -3
Query: 770 GGSCGSNHCLILIMVIAK*GWMESLLSPGTYTR*LEVRRMKAPFTGYSSQPHQSIAVIMK 591
GGSCGSNHCLILIM+IAK*GWME LLSPGTYTR*LEV+R+KAPFT SSQPHQSIAVIMK
Sbjct: 375 GGSCGSNHCLILIMIIAK*GWMEPLLSPGTYTR*LEVQRLKAPFTSNSSQPHQSIAVIMK 196
Query: 590 SSKS*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHW 411
SS S*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF C *FIPTNLH*SPIG RPTHW
Sbjct: 195 SSNS*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFPCC*FIPTNLH*SPIGARPTHW 16
Query: 410 VS 405
VS
Sbjct: 15 VS 10
Score = 279 bits (603), Expect = 6e-074
Identities = 107/111 (96%), Positives = 108/111 (97%)
Frame = +3 / +1
Query: 405 ADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGL 584
ADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSG+
Sbjct: 10 ADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGV 189
Query: 585 AALHDDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPSLLSNDHDQ 737
AALHDDSNALMWLRGV GEGGF S NFQSPGIGSWGQQRLHPSLLSNDHDQ
Sbjct: 190 AALHDDSNALMWLRGVAGEGGFQSLNFQSPGIGSWGQQRLHPSLLSNDHDQ 342
Score = 263 bits (569), Expect = 3e-069
Identities = 113/123 (91%), Positives = 116/123 (94%)
Frame = -1 / -2
Query: 771 GRQLRQQPLLDTDHGHC*VRMDGVSVVPRNLYQVTGSSKNESPLHRLLLSATSKHCCHHE 592
GRQLRQQPLLDTDH HC*VRMDG S VPRNLYQVTGSSK ESPLH+ LLSATSKHCCHHE
Sbjct: 376 GRQLRQQPLLDTDHDHC*VRMDGASAVPRNLYQVTGSSKTESPLHQQLLSATSKHCCHHE 197
Query: 591 EQQVLNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAFLLRLIHPNQPSLISNRN*ANAL 412
EQQ+LNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAF L LIHPNQPSLISNR+*ANAL
Sbjct: 196 EQQLLNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAFPLLLIHPNQPSLISNRS*ANAL 17
Query: 411 GQH 403
GQH
Sbjct: 16 GQH 8
Score = 262 bits (567), Expect = 6e-069
Identities = 110/123 (89%), Positives = 113/123 (91%)
Frame = -3 / -1
Query: 772 WEXXXXXXXX*Y*SWSLLSKDGWSLCCPQEPIPGDWKFEE*KPPSPVTPLSHIKALLSS* 593
WE *Y*S SLLSKDGWSLCCPQEPIPGDWKF++*KPPSP TPLSHIKALLSS*
Sbjct: 377 WEAAAAATTA*Y*S*SLLSKDGWSLCCPQEPIPGDWKFKD*KPPSPATPLSHIKALLSS* 198
Query: 592 RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRT 413
RAA+PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRT
Sbjct: 197 RAATPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRT 18
Query: 412 GSA 404
GSA
Sbjct: 17 GSA 9
Score = 243 bits (524), Expect = 5e-063
Identities = 104/116 (89%), Positives = 107/116 (92%)
Frame = +1 / +2
Query: 403 MLTQCVGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQD 582
+LTQCVGL PIGDQ*RLVGMNQ Q KGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQ+
Sbjct: 8 VLTQCVGLAPIGDQ*RLVGMNQQQGKGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQE 187
Query: 583 LLLFMMTAML*CG*EE*PVKGAFILRTSSHLV*VPGDNRDSIHPYLAMTMISIKQW 750
LLLFMMTAML*CG*EE VKGAF L TSSHLV*VPGD+R SIHPYLAM MISIKQW
Sbjct: 188 LLLFMMTAML*CG*EELLVKGAFSL*TSSHLV*VPGDSRGSIHPYLAMIMISIKQW 355
Score = 213 bits (459), Expect = 4e-054
Identities = 99/108 (91%), Positives = 100/108 (92%)
Frame = +2 / +3
Query: 404 C*PSALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFRT 583
C*PSALA* LLEISEGWLG*IN R KAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFR+
Sbjct: 9 C*PSALA*LLLEISEGWLG*INSRGKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFRS 188
Query: 584 CCSS**QQCFDVAERSNR*RGLSFFELPVTWYRFLGTTETPSILT*Q* 727
CCSS**QQCFDVAERS *RGLS FELPVTWYRFLGT E PSILT*Q*
Sbjct: 189 CCSS**QQCFDVAERSCW*RGLSVFELPVTWYRFLGTAEAPSILT*Q* 332
>gb|CW425067.1|CW425067 fsbb001f135m01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f135m01, DNA
sequence
Length = 708
Score = 190 bits (410), Expect = 3e-047
Identities = 87/108 (80%), Positives = 89/108 (82%)
Frame = +2 / +2
Query: 599 *QQCFDVAERSNR*RGLSFFELPVTWYRFLGTTETPSILT*Q*PXXXXXXXXXXXXLPVR 778
*QQCFDVAERS *RGLS FELPVTWYRFLGTTE PSILT*Q* LPVR
Sbjct: 383 *QQCFDVAERSCW*RGLSVFELPVTWYRFLGTTEAPSILT*Q*S*SVSSSGCCSSCLPVR 562
Query: 779 WLSEAAIPTPSTTYAVPTGAVQSQSAVAATNTTASEPTADG*F*CSKY 922
WLSEAAIPTPST YA+PTGAVQSQSAVAATNTTASEPTADG* *CSK+
Sbjct: 563 WLSEAAIPTPSTAYAIPTGAVQSQSAVAATNTTASEPTADG*S*CSKH 706
Score = 188 bits (406), Expect = 9e-047
Identities = 84/117 (71%), Positives = 88/117 (75%)
Frame = -1 / -1
Query: 924 EYFEHQN*PSAVGSLXXXXXXXXXXXXXXXXVGTA*VVEGVGIAASDNHRTGRQLRQQPL 745
E FEHQ+*PSAVGSL VG A* VEGVGIAASDNHRTGRQL QQPL
Sbjct: 708 ECFEHQD*PSAVGSLAVVFVAATAD*DCTAPVGIA*AVEGVGIAASDNHRTGRQLLQQPL 529
Query: 744 LDTDHGHC*VRMDGVSVVPRNLYQVTGSSKNESPLHRLLLSATSKHCCHHEEQQVLN 574
LDTDH HC*VRMDG SVVPRNLYQVTGSSK ESPLH+ LLSATSKHCCH + +N
Sbjct: 528 LDTDHDHC*VRMDGASVVPRNLYQVTGSSKTESPLHQQLLSATSKHCCHLKCNMTIN 358
Score = 171 bits (368), Expect = 2e-041
Identities = 79/110 (71%), Positives = 84/110 (76%)
Frame = -2 / -2
Query: 923 NILSIRTNHXXXXXXXXXXXLQQRIEIALLLWGXXXXXXXXXXXLQITTGLGGSCGSNHC 744
N+LSIRTNH LQQRIEIALLLWG LQITTGLGGSC SNHC
Sbjct: 707 NVLSIRTNHLLLARLL*YLLLQQRIEIALLLWGLHRLLKV*ELLLQITTGLGGSCCSNHC 528
Query: 743 LILIMVIAK*GWMESLLSPGTYTR*LEVRRMKAPFTGYSSQPHQSIAVIM 594
LILIM+IAK*GWME LLSPGTYTR*LEV+R+KAPFT SSQPHQSIAVI+
Sbjct: 527 LILIMIIAK*GWMEPLLSPGTYTR*LEVQRLKAPFTSNSSQPHQSIAVIL 378
Score = 146 bits (313), Expect(2) = 1e-057
Identities = 59/78 (75%), Positives = 59/78 (75%)
Frame = +3 / +3
Query: 597 DDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPSLLSNDHDQXXXXXXXXXXXXX 776
DDSNALMWLRGV GEGGF S NFQSPGIGSWGQQRLHPSLLSNDHDQ
Sbjct: 381 DDSNALMWLRGVAGEGGFQSLNFQSPGIGSWGQQRLHPSLLSNDHDQYQAVVAAAAASQS 560
Query: 777 XXXLKQQFLHLQQPMQSP 830
LKQQFLHLQQPMQSP
Sbjct: 561 GGYLKQQFLHLQQPMQSP 614
Score = 132 bits (283), Expect = 8e-030
Identities = 54/66 (81%), Positives = 56/66 (84%)
Frame = -3 / -3
Query: 790 FR*PPDWEXXXXXXXX*Y*SWSLLSKDGWSLCCPQEPIPGDWKFEE*KPPSPVTPLSHIK 611
FR*PPDWE *Y*S SLLSKDGWSLCCPQEPIPGDWKF++*KPPSP TPLSHIK
Sbjct: 574 FR*PPDWEAAAAATTA*Y*S*SLLSKDGWSLCCPQEPIPGDWKFKD*KPPSPATPLSHIK 395
Query: 610 ALLSS* 593
ALLSS*
Sbjct: 394 ALLSS* 377
Score = 99.1 bits (210), Expect(2) = 1e-057
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1 / +1
Query: 802 YTFNNLCSPHRSSAISIRCCSNKYYSKRANSRWLVLMLKIF 924
YTFN+LC+PHRSSAISIRCCSNKYYSKRANSRWLVLMLK F
Sbjct: 586 YTFNSLCNPHRSSAISIRCCSNKYYSKRANSRWLVLMLKTF 708
>gb|CW425068.1|CW425068 fsbb001f135m01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f135m01, DNA
sequence
Length = 720
Score = 214 bits (461), Expect = 2e-054
Identities = 96/118 (81%), Positives = 99/118 (83%)
Frame = +2 / -1
Query: 599 *QQCFDVAERSNR*RGLSFFELPVTWYRFLGTTETPSILT*Q*PXXXXXXXXXXXXLPVR 778
*QQCFDVAERS *RGLS FELPVTWYRFLGTTE PSILT*Q* LPVR
Sbjct: 645 *QQCFDVAERSCW*RGLSVFELPVTWYRFLGTTEAPSILT*Q*S*SVSSSGCCSSCLPVR 466
Query: 779 WLSEAAIPTPSTTYAVPTGAVQSQSAVAATNTTASEPTADG*F*CSKYSVRAQPRCYS 952
WLSEAAIPTPST YA+PTGAVQSQSAVAATNTTASEPTADG* *CSK+SVRAQP+CYS
Sbjct: 465 WLSEAAIPTPSTAYAIPTGAVQSQSAVAATNTTASEPTADG*S*CSKHSVRAQPKCYS 292
Score = 193 bits (416), Expect(2) = 5e-052
Identities = 86/119 (72%), Positives = 90/119 (75%)
Frame = -1 / +2
Query: 930 RTEYFEHQN*PSAVGSLXXXXXXXXXXXXXXXXVGTA*VVEGVGIAASDNHRTGRQLRQQ 751
RTE FEHQ+*PSAVGSL VG A* VEGVGIAASDNHRTGRQL QQ
Sbjct: 314 RTECFEHQD*PSAVGSLAVVFVAATAD*DCTAPVGIA*AVEGVGIAASDNHRTGRQLLQQ 493
Query: 750 PLLDTDHGHC*VRMDGVSVVPRNLYQVTGSSKNESPLHRLLLSATSKHCCHHEEQQVLN 574
PLLDTDH HC*VRMDG SVVPRNLYQVTGSSK ESPLH+ LLSATSKHCCH + +N
Sbjct: 494 PLLDTDHDHC*VRMDGASVVPRNLYQVTGSSKTESPLHQQLLSATSKHCCHLKCNMTIN 670
Score = 191 bits (411), Expect(2) = 5e-050
Identities = 86/119 (72%), Positives = 91/119 (76%)
Frame = -2 / +3
Query: 950 NSTWVEHGLNILSIRTNHXXXXXXXXXXXLQQRIEIALLLWGXXXXXXXXXXXLQITTGL 771
NS W EHGLN+LSIRTNH LQQRIEIALLLWG LQITTGL
Sbjct: 294 NSIWAEHGLNVLSIRTNHLLLARLL*YLLLQQRIEIALLLWGLHRLLKV*ELLLQITTGL 473
Query: 770 GGSCGSNHCLILIMVIAK*GWMESLLSPGTYTR*LEVRRMKAPFTGYSSQPHQSIAVIM 594
GGSC SNHCLILIM+IAK*GWME LLSPGTYTR*LEV+R+KAPFT SSQPHQSIAVI+
Sbjct: 474 GGSCCSNHCLILIMIIAK*GWMEPLLSPGTYTR*LEVQRLKAPFTSNSSQPHQSIAVIL 650
Score = 146 bits (313), Expect(2) = 6e-046
Identities = 59/78 (75%), Positives = 59/78 (75%)
Frame = +3 / -2
Query: 597 DDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPSLLSNDHDQXXXXXXXXXXXXX 776
DDSNALMWLRGV GEGGF S NFQSPGIGSWGQQRLHPSLLSNDHDQ
Sbjct: 647 DDSNALMWLRGVAGEGGFQSLNFQSPGIGSWGQQRLHPSLLSNDHDQYQAVVAAAAASQS 468
Query: 777 XXXLKQQFLHLQQPMQSP 830
LKQQFLHLQQPMQSP
Sbjct: 467 GGYLKQQFLHLQQPMQSP 414
Score = 144 bits (308), Expect(2) = 9e-057
Identities = 57/75 (76%), Positives = 62/75 (82%)
Frame = +1 / -3
Query: 802 YTFNNLCSPHRSSAISIRCCSNKYYSKRANSRWLVLMLKIFSPCSTQVLFXXXXXXXXXX 981
YTFN+LC+PHRSSAISIRCCSNKYYSKRANSRWLVLMLK FSPCS Q+LF
Sbjct: 442 YTFNSLCNPHRSSAISIRCCSNKYYSKRANSRWLVLMLKTFSPCSAQMLFSSSSTNSSRC 263
Query: 982 XILIMTRSKRFNQIN 1026
+LIMTRS+RFNQIN
Sbjct: 262 SMLIMTRSRRFNQIN 218
Score = 132 bits (283), Expect(2) = 5e-032
Identities = 54/66 (81%), Positives = 56/66 (84%)
Frame = -3 / +1
Query: 790 FR*PPDWEXXXXXXXX*Y*SWSLLSKDGWSLCCPQEPIPGDWKFEE*KPPSPVTPLSHIK 611
FR*PPDWE *Y*S SLLSKDGWSLCCPQEPIPGDWKF++*KPPSP TPLSHIK
Sbjct: 454 FR*PPDWEAAAAATTA*Y*S*SLLSKDGWSLCCPQEPIPGDWKFKD*KPPSPATPLSHIK 633
Query: 610 ALLSS* 593
ALLSS*
Sbjct: 634 ALLSS* 651
Score = 98.7 bits (209), Expect(2) = 9e-057
Identities = 45/51 (88%), Positives = 45/51 (88%)
Frame = +1 / -3
Query: 598 MTAML*CG*EE*PVKGAFILRTSSHLV*VPGDNRDSIHPYLAMTMISIKQW 750
MTAML*CG*EE VKGAF L TSSHLV*VPGDNR SIHPYLAM MISIKQW
Sbjct: 646 MTAML*CG*EELLVKGAFSL*TSSHLV*VPGDNRGSIHPYLAMIMISIKQW 494
Score = 60.2 bits (125), Expect(2) = 6e-046
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = +3 / -2
Query: 897 MVSSDAQNIQSVLNPGAIXXXXXXXXXXXXTHNDQKQKIQPDQ 1025
MVS DAQNIQSVL+P AI HNDQKQKIQPDQ
Sbjct: 347 MVSPDAQNIQSVLSPNAIQQQLHQLQQMQHAHNDQKQKIQPDQ 219
Score = 33.1 bits (66), Expect(2) = 5e-052
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1 / +2
Query: 1029 TVDLVESFASGHYEY 985
TVDLVES ASGHYE+
Sbjct: 215 TVDLVESSASGHYEH 259
Score = 29.0 bits (57), Expect(2) = 5e-050
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 1024 *SG*IFCFWSL* 989
*SG*IFCFWSL*
Sbjct: 220 *SG*IFCFWSL* 255
Score = 27.2 bits (53), Expect(2) = 5e-032
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -3 / +1
Query: 940 GLSTD*IF*ASELTI 896
GLSTD*+F*AS LTI
Sbjct: 304 GLSTD*MF*ASGLTI 348
>gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 121 bits (258), Expect(2) = 4e-045
Identities = 46/94 (48%), Positives = 67/94 (71%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVSAKRLVAGD+ +F+ + +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 39 SGWSVFVSAKRLVAGDAFIFLRGDNGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATA 218
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP EFV+P +Y++++
Sbjct: 219 WHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESL 320
Score = 82.6 bits (174), Expect(2) = 4e-045
Identities = 33/70 (47%), Positives = 45/70 (64%)
Frame = +3 / +3
Query: 321 VGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSL 500
+GMRF+M FE EE+ +R+ GTI D + W S WR +KV WDE+++ RP RVS
Sbjct: 336 IGMRFKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLKVRWDEASSIPRPERVSP 515
Query: 501 WEIEPLTTFP 530
W+IEP + P
Sbjct: 516 WQIEPAVSPP 545
>gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 121 bits (259), Expect(3) = 6e-044
Identities = 47/94 (50%), Positives = 68/94 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R + +PSSV+SS SMH+G+L
Sbjct: 46 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVISSQSMHLGVLATA 225
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T S FT++Y PR SP+EF+IP +Y+++V
Sbjct: 226 WHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESV 327
Score = 52.4 bits (108), Expect(3) = 6e-044
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +3 / +1
Query: 420 WPSSYWRSVKVGWDESTAGERPPRVSLWEIEP 515
WP S WR +KV WDE + RP RVS W+IEP
Sbjct: 439 WPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEP 534
Score = 44.1 bits (90), Expect(3) = 6e-044
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSY 434
S+GMRFRM FE EE+ +R+ GTI + DP+ SS+
Sbjct: 340 SIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSW 456
>gb|BM324094.1|BM324094 PIC1_24_B06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 564
Score = 144 bits (308), Expect(2) = 2e-039
Identities = 57/75 (76%), Positives = 62/75 (82%)
Frame = +1 / +1
Query: 802 YTFNNLCSPHRSSAISIRCCSNKYYSKRANSRWLVLMLKIFSPCSTQVLFXXXXXXXXXX 981
YTFN+LC+PHRSSAISIRCCSNKYYSKRANSRWLVLMLK FSPCS Q+LF
Sbjct: 79 YTFNSLCNPHRSSAISIRCCSNKYYSKRANSRWLVLMLKTFSPCSAQMLFSSSSTNSSRC 258
Query: 982 XILIMTRSKRFNQIN 1026
+LIMTRS+RFNQIN
Sbjct: 259 SMLIMTRSRRFNQIN 303
Score = 136 bits (291), Expect = 7e-031
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +2 / +2
Query: 767 LPVRWLSEAAIPTPSTTYAVPTGAVQSQSAVAATNTTASEPTADG*F*CSKYSVRAQPRC 946
LPVRWLSEAAIPTPST YA+PTGAVQSQSAVAATNTTASEPTADG* *CSK+SVRAQP+C
Sbjct: 44 LPVRWLSEAAIPTPSTAYAIPTGAVQSQSAVAATNTTASEPTADG*S*CSKHSVRAQPKC 223
Query: 947 YS 952
YS
Sbjct: 224 YS 229
Score = 100 bits (214), Expect(2) = 2e-024
Identities = 47/73 (64%), Positives = 48/73 (65%)
Frame = -2 / -2
Query: 950 NSTWVEHGLNILSIRTNHXXXXXXXXXXXLQQRIEIALLLWGXXXXXXXXXXXLQITTGL 771
NS W EHGLN+LSIRTNH LQQRIEIALLLWG LQITTGL
Sbjct: 227 NSIWAEHGLNVLSIRTNHLLLARLL*YLLLQQRIEIALLLWGLHRLLKV*ELLLQITTGL 48
Query: 770 GGSCGSNHCLILI 732
GGSC SNHCLILI
Sbjct: 47 GGSCCSNHCLILI 9
Score = 93.6 bits (198), Expect(2) = 5e-021
Identities = 45/66 (68%), Positives = 46/66 (69%)
Frame = -1 / -1
Query: 930 RTEYFEHQN*PSAVGSLXXXXXXXXXXXXXXXXVGTA*VVEGVGIAASDNHRTGRQLRQQ 751
RTE FEHQ+*PSAVGSL VG A* VEGVGIAASDNHRTGRQL QQ
Sbjct: 207 RTECFEHQD*PSAVGSLAVVFVAATAD*DCTAPVGIA*AVEGVGIAASDNHRTGRQLLQQ 28
Query: 750 PLLDTD 733
PLLDTD
Sbjct: 27 PLLDTD 10
Score = 40.5 bits (82), Expect(2) = 2e-039
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = +3 / +3
Query: 732 DQXXXXXXXXXXXXXXXXLKQQFLHLQQPMQSP 830
DQ LKQQFLHLQQPMQSP
Sbjct: 9 DQYQAVVAAAAASQSGGYLKQQFLHLQQPMQSP 107
Score = 33.1 bits (66), Expect(2) = 2e-024
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1 / -1
Query: 1029 TVDLVESFASGHYEY 985
TVDLVES ASGHYE+
Sbjct: 306 TVDLVESSASGHYEH 262
Score = 29.0 bits (57), Expect(2) = 5e-021
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3 / -3
Query: 1024 *SG*IFCFWSL* 989
*SG*IFCFWSL*
Sbjct: 301 *SG*IFCFWSL* 266
>gb|BG412918.1|BG412918 OV2_36_E05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 115 bits (245), Expect(2) = 1e-038
Identities = 46/94 (48%), Positives = 64/94 (68%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFV+AKRLVA D+ +F+ E +L +G+R A QT +PSSV+SS SMHIG+L
Sbjct: 55 SGWSVFVNAKRLVAWDAFIFLRGENGELRVGVRRALMHQTTIPSSVISSHSMHIGVLATA 234
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T S FT++Y PR SP EFV+ +Y +++
Sbjct: 235 WHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESL 336
Score = 67.0 bits (140), Expect(2) = 1e-038
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDES 467
S+GM F+M FE EE++ +R+ GTI + +DP W S WRS+KV WDE+
Sbjct: 349 SIGMIFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLKVRWDEA 498
>gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 469
Score = 120 bits (256), Expect(2) = 3e-038
Identities = 46/94 (48%), Positives = 66/94 (70%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVSAKRLVAGD+ +F+ + +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 15 SGWSVFVSAKRLVAGDAFIFLRGDNGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATA 194
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP EFV+P +Y +++
Sbjct: 195 WHAVNTGTMFTVYYKPRTSPAEFVVPCDRYTESL 296
Score = 60.6 bits (126), Expect(2) = 3e-038
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = +3 / +3
Query: 321 VGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTA 473
+GMRF+M FE EE+ +R+ GTI D + W S WR +KV WDE+++
Sbjct: 312 IGMRFKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLKVRWDEASS 464
>gb|CW139790.1|CW139790 104_530_11135433_148_34916_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135433, DNA
sequence
Length = 719
Score = 78.0 bits (164), Expect(3) = 5e-037
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = +3 / +3
Query: 231 TIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRY 377
T F RASP+EFVIP +KY KAV+ ++S+GMRFRM+FETEES RRY
Sbjct: 489 TAFIPFRASPSEFVIPFAKYQKAVYSNQLSLGMRFRMMFETEESXTRRY 635
Score = 74.8 bits (157), Expect(3) = 5e-037
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = +3 / +2
Query: 93 KNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
+ QLLLGIR A R + SSVLSSDSMHIG+L NS+FT+FYNPR
Sbjct: 275 RQQLLLGIRRANRQPVNLSSSVLSSDSMHIGILAAAAHAAANNSQFTVFYNPR 433
Score = 46.0 bits (94), Expect(3) = 5e-037
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWS+FVS KRL+AGDSVLFI
Sbjct: 73 TGWSLFVSGKRLLAGDSVLFI 135
>gb|CL164957.1|CL164957 104_359_10808265_114_31816_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808265, DNA
sequence
Length = 739
Score = 78.5 bits (165), Expect(3) = 3e-036
Identities = 31/46 (67%), Positives = 39/46 (84%)
Frame = +3 / +3
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGT 386
RASPTEFVIP +KY KA++ +IS+GMRFRM+FETEE +RRY G+
Sbjct: 477 RASPTEFVIPFAKYQKALYSNQISLGMRFRMMFETEELGMRRYSGS 614
Score = 78.5 bits (165), Expect(3) = 3e-036
Identities = 34/55 (61%), Positives = 39/55 (70%)
Frame = +3 / +2
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
+E+ QLLLGIR A+R T + SSVLSSDSMHIG+L NS FTIFYNPR
Sbjct: 209 DERQQLLLGIRRASRQPTNISSSVLSSDSMHIGVLAAAAHAAANNSPFTIFYNPR 373
Score = 39.1 bits (79), Expect(3) = 3e-036
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGW +FV KRL AGDSV+F+
Sbjct: 2 TGWILFVGGKRLFAGDSVIFV 64
>gb|CW154631.1|CW154631 104_556_11145702_148_36352_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145702, DNA
sequence
Length = 696
Score = 99.1 bits (210), Expect(2) = 1e-032
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +2 / +1
Query: 251 GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCPQV 376
GKS RICYTPFEIHQGCFSHADISWDAIQDV+*D*GI CPQV
Sbjct: 37 GKSIRICYTPFEIHQGCFSHADISWDAIQDVV*D*GI*CPQV 162
Score = 99.1 bits (210), Expect(2) = 5e-035
Identities = 39/46 (84%), Positives = 42/46 (91%)
Frame = +1 / +3
Query: 238 SIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAG 375
+++ GQV QNLLYPFRNTSRLFFTRGYQLGCDSGC LRLRN VSAG
Sbjct: 24 NVLAGQVHQNLLYPFRNTSRLFFTRGYQLGCDSGCCLRLRNLVSAG 161
Score = 98.7 bits (209), Expect(2) = 5e-036
Identities = 39/42 (92%), Positives = 39/42 (92%)
Frame = -2 / -3
Query: 374 PADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCP 249
PADT FLSLK HPESHPN*YPRVKNSLDVFRKGYNKF WTCP
Sbjct: 160 PADTRFLSLKQHPESHPN*YPRVKNSLDVFRKGYNKF*WTCP 35
Score = 96.4 bits (204), Expect(2) = 6e-031
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = +3 / +2
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 374
RASP+EFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR
Sbjct: 35 RASPSEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 160
Score = 92.3 bits (195), Expect(2) = 2e-030
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = -3 / -1
Query: 376 YLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLAL 248
+LRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNS GLAL
Sbjct: 162 HLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSDGLAL 34
Score = 74.4 bits (156), Expect(2) = 5e-036
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = -2 / -2
Query: 449 LH*SPIGTRPTHWVSITHFCYCPHVPA 369
LH*SPIG RPTHWVSITHFCYCPHVPA
Sbjct: 359 LH*SPIGARPTHWVSITHFCYCPHVPA 279
Score = 70.7 bits (148), Expect(2) = 5e-035
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3 / +3
Query: 372 RYMGTITEVSDADPVRWPSSYWRSVKV 452
RYMGTITEVSDADPVRWPSSYWRSVKV
Sbjct: 282 RYMGTITEVSDADPVRWPSSYWRSVKV 362
Score = 62.5 bits (130), Expect(2) = 2e-030
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = -3 / -3
Query: 451 TFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDS 356
TFTDLQ*ELGQRTGSASLTSVIVPMYL+ ++
Sbjct: 361 TFTDLQ*ELGQRTGSASLTSVIVPMYLQLFNN 266
Score = 62.5 bits (130), Expect(2) = 1e-032
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +1 / +1
Query: 364 VSAGTWGQ*QK*VMLTQCVGLVPIGDQ*R 450
+ AGTWGQ*QK*VMLTQCVGL PIGDQ*R
Sbjct: 274 IIAGTWGQ*QK*VMLTQCVGLAPIGDQ*R 360
Score = 59.7 bits (124), Expect(2) = 6e-031
Identities = 28/31 (90%), Positives = 28/31 (90%)
Frame = +2 / +2
Query: 359 IKCPQVHGDNNRSE*C*PSALA*FLLEISEG 451
IK QVHGDNNRSE*C*PSALA* LLEISEG
Sbjct: 269 IK*LQVHGDNNRSE*C*PSALA*LLLEISEG 361
>gb|CW187056.1|CW187056 104_605_11166892_116_36720_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166892, DNA
sequence
Length = 650
Score = 99.1 bits (210), Expect(2) = 1e-032
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +2 / +1
Query: 251 GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCPQV 376
GKS RICYTPFEIHQGCFSHADISWDAIQDV+*D*GI CPQV
Sbjct: 85 GKSIRICYTPFEIHQGCFSHADISWDAIQDVV*D*GI*CPQV 210
Score = 99.1 bits (210), Expect(2) = 5e-035
Identities = 39/46 (84%), Positives = 42/46 (91%)
Frame = +1 / +3
Query: 238 SIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAG 375
+++ GQV QNLLYPFRNTSRLFFTRGYQLGCDSGC LRLRN VSAG
Sbjct: 72 NVLAGQVHQNLLYPFRNTSRLFFTRGYQLGCDSGCCLRLRNLVSAG 209
Score = 98.7 bits (209), Expect(2) = 6e-036
Identities = 39/42 (92%), Positives = 39/42 (92%)
Frame = -2 / -2
Query: 374 PADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCP 249
PADT FLSLK HPESHPN*YPRVKNSLDVFRKGYNKF WTCP
Sbjct: 208 PADTRFLSLKQHPESHPN*YPRVKNSLDVFRKGYNKF*WTCP 83
Score = 96.4 bits (204), Expect(2) = 6e-031
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = +3 / +2
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 374
RASP+EFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR
Sbjct: 83 RASPSEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 208
Score = 92.3 bits (195), Expect(2) = 2e-030
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = -3 / -3
Query: 376 YLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLAL 248
+LRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNS GLAL
Sbjct: 210 HLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSDGLAL 82
Score = 74.4 bits (156), Expect(2) = 6e-036
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = -2 / -1
Query: 449 LH*SPIGTRPTHWVSITHFCYCPHVPA 369
LH*SPIG RPTHWVSITHFCYCPHVPA
Sbjct: 407 LH*SPIGARPTHWVSITHFCYCPHVPA 327
Score = 70.7 bits (148), Expect(2) = 5e-035
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3 / +3
Query: 372 RYMGTITEVSDADPVRWPSSYWRSVKV 452
RYMGTITEVSDADPVRWPSSYWRSVKV
Sbjct: 330 RYMGTITEVSDADPVRWPSSYWRSVKV 410
Score = 62.5 bits (130), Expect(2) = 1e-032
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +1 / +1
Query: 364 VSAGTWGQ*QK*VMLTQCVGLVPIGDQ*R 450
+ AGTWGQ*QK*VMLTQCVGL PIGDQ*R
Sbjct: 322 IIAGTWGQ*QK*VMLTQCVGLAPIGDQ*R 408
Score = 62.5 bits (130), Expect(2) = 2e-030
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = -3 / -2
Query: 451 TFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDS 356
TFTDLQ*ELGQRTGSASLTSVIVPMYL+ ++
Sbjct: 409 TFTDLQ*ELGQRTGSASLTSVIVPMYLQLFNN 314
Score = 59.7 bits (124), Expect(2) = 6e-031
Identities = 28/31 (90%), Positives = 28/31 (90%)
Frame = +2 / +2
Query: 359 IKCPQVHGDNNRSE*C*PSALA*FLLEISEG 451
IK QVHGDNNRSE*C*PSALA* LLEISEG
Sbjct: 317 IK*LQVHGDNNRSE*C*PSALA*LLLEISEG 409
>gb|BF481720.1|BF481720 FM1_21_E10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 521
Score = 87.7 bits (185), Expect(2) = 4e-034
Identities = 39/95 (41%), Positives = 56/95 (58%)
Frame = +3 / +2
Query: 321 VGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSL 500
+GMRF+M FE EE+ +R+ GTI D + W S WR +KV WDE+++ RP RVS
Sbjct: 209 IGMRFKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLKVRWDEASSIPRPERVSP 388
Query: 501 WEIEPLTTFPMYPSLFPLRVKHPWYSGLAALHDDS 605
W+IEP + P L R K P + +++L + S
Sbjct: 389 WQIEPAVSPPPVNPLPVHRPKRPRSNAVSSLAESS 493
Score = 79.0 bits (166), Expect(2) = 4e-034
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +3 / +2
Query: 111 GIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPLSKY 290
G+R A R Q +PSSV+SS SMH+G+L T + FT++Y PR SP EFV+P +Y
Sbjct: 2 GVRRAMRQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPCDRY 181
Query: 291 IKAV 302
++++
Sbjct: 182 MESL 193
>gb|CL164958.1|CL164958 104_359_10808265_116_31817_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808265, DNA
sequence
Length = 730
Score = 78.5 bits (165), Expect(3) = 2e-033
Identities = 31/46 (67%), Positives = 39/46 (84%)
Frame = +3 / -2
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGT 386
RASPTEFVIP +KY KA++ +IS+GMRFRM+FETEE +RRY G+
Sbjct: 270 RASPTEFVIPFAKYQKALYSNQISLGMRFRMMFETEELGMRRYSGS 133
Score = 78.5 bits (165), Expect(3) = 2e-033
Identities = 34/55 (61%), Positives = 39/55 (70%)
Frame = +3 / -1
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
+E+ QLLLGIR A+R T + SSVLSSDSMHIG+L NS FTIFYNPR
Sbjct: 538 DERQQLLLGIRRASRQPTNISSSVLSSDSMHIGVLAAAAHAAANNSPFTIFYNPR 374
Score = 29.5 bits (58), Expect(3) = 2e-033
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -1
Query: 36 FVSAKRLVAGDSVLFI 83
FV KRL AGDSV+F+
Sbjct: 730 FVGGKRLFAGDSVIFV 683
>gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 583
Score = 73.0 bits (153), Expect(3) = 1e-032
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +3 / +1
Query: 123 ATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
A R + +PSSV+SS SMH+G+L T S FT++Y PR SP+EF+IP +Y+++V
Sbjct: 13 AMRQLSNVPSSVISSQSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESV 192
Score = 62.9 bits (131), Expect(3) = 1e-032
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +3 / +1
Query: 420 WPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHP 569
WP S WR +KV WDE + RP RVS W+IEP ++ P+ P RVK P
Sbjct: 304 WPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLPLSSRVKRP 453
Score = 44.1 bits (90), Expect(3) = 1e-032
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSY 434
S+GMRFRM FE EE+ +R+ GTI + DP+ SS+
Sbjct: 205 SIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSW 321
>gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 555
Score = 73.0 bits (153), Expect(3) = 1e-032
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +3 / +1
Query: 123 ATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
A R + +PSSV+SS SMH+G+L T S FT++Y PR SP+EF+IP +Y+++V
Sbjct: 13 AMRQLSNVPSSVISSQSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESV 192
Score = 62.9 bits (131), Expect(3) = 1e-032
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +3 / +1
Query: 420 WPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHP 569
WP S WR +KV WDE + RP RVS W+IEP ++ P+ P RVK P
Sbjct: 304 WPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLPLSSRVKRP 453
Score = 44.1 bits (90), Expect(3) = 1e-032
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSY 434
S+GMRFRM FE EE+ +R+ GTI + DP+ SS+
Sbjct: 205 SIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSW 321
>gb|BM325683.1|BM325683 PIC1_47_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 92.7 bits (196), Expect(2) = 1e-032
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE++ +R+ GTI + +DP W S WRS+KV WDE+++ RP RVS
Sbjct: 189 SIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLKVRWDEASSVPRPERVS 368
Query: 498 LWEIEP 515
W+IEP
Sbjct: 369 PWQIEP 386
Score = 69.3 bits (145), Expect(2) = 1e-032
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +3 / +3
Query: 135 QTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
QT +PSSV+SS SMH+G+L T S FT++Y PR SP EFV+ +Y +++
Sbjct: 9 QTTIPSSVISSHSMHLGVLATAWHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESL 176
>gb|BM325852.1|BM325852 PIC1_53_F03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 432
Score = 92.7 bits (196), Expect(2) = 1e-032
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE++ +R+ GTI + +DP W S WRS+KV WDE+++ RP RVS
Sbjct: 189 SIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLKVRWDEASSVPRPERVS 368
Query: 498 LWEIEP 515
W+IEP
Sbjct: 369 PWQIEP 386
Score = 69.3 bits (145), Expect(2) = 1e-032
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +3 / +3
Query: 135 QTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
QT +PSSV+SS SMH+G+L T S FT++Y PR SP EFV+ +Y +++
Sbjct: 9 QTTIPSSVISSHSMHLGVLATAWHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESL 176
>gb|BZ343273.1|BZ343273 ho53a08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho53a08 5', DNA sequence
Length = 604
Score = 90.0 bits (190), Expect(3) = 2e-031
Identities = 32/49 (65%), Positives = 44/49 (89%)
Frame = +3 / -2
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
+T++S+GMRFRMLFETE+S VRRYMGTIT + D DP+RW +S+WR+++V
Sbjct: 528 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQV 382
Score = 51.9 bits (107), Expect(3) = 2e-031
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3 / -3
Query: 444 VKVGWDESTAGERPPRVSLWEIEPLTT 524
++VGWDESTA ER RVS+WEIEP+ T
Sbjct: 161 LQVGWDESTASERRTRVSIWEIEPVAT 81
Score = 37.3 bits (75), Expect(3) = 2e-031
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +3 / -2
Query: 237 FYNPRASPTEFVIPLSKYIKAVF 305
+ + RASP+EFVIPL+KY KA++
Sbjct: 594 YSSDRASPSEFVIPLAKYNKALY 526
>gb|CW248865.1|CW248865 104_710_11222538_148_35036_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222538, DNA
sequence
Length = 636
Score = 78.5 bits (165), Expect(2) = 4e-030
Identities = 32/49 (65%), Positives = 40/49 (81%)
Frame = +3 / -3
Query: 231 TIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRY 377
T F RASP+EFVIP +KY KAV+ ++S+GMRFRM+FETEES+ RRY
Sbjct: 337 TAFIPFRASPSEFVIPFAKYQKAVYSNQLSLGMRFRMMFETEESATRRY 191
Score = 74.8 bits (157), Expect(2) = 4e-030
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = +3 / -2
Query: 93 KNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
+ QLLLGIR A R + SSVLSSDSMHIG+L NS+FT+FYNPR
Sbjct: 551 RQQLLLGIRRANRQPVNLSSSVLSSDSMHIGILAAAAHAAANNSQFTVFYNPR 393
>gb|CW154630.1|CW154630 104_556_11145702_116_36351_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145702, DNA
sequence
Length = 724
Score = 132 bits (282), Expect = 1e-029
Identities = 51/59 (86%), Positives = 53/59 (89%)
Frame = +3 / -2
Query: 441 SVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGLAALHDDSNALM 617
S +VGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSG+AALH LM
Sbjct: 642 STQVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGVAALHGTLQILM 466
Score = 129 bits (276), Expect = 8e-029
Identities = 51/70 (72%), Positives = 55/70 (78%)
Frame = -2 / +1
Query: 656 RMKAPFTGYSSQPHQSIAVIMKSSKS*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF 477
+ K +T S H+ + MKSS S*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF
Sbjct: 427 QQKRCWTQRYSNKHEYLKCTMKSSNS*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF 606
Query: 476 SCG*FIPTNL 447
C *FIPTNL
Sbjct: 607 PCC*FIPTNL 636
Score = 119 bits (254), Expect = 8e-026
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = +1 / -3
Query: 448 RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQDLLLFMM 600
RLVGMNQ Q KGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQ+LLLFM+
Sbjct: 635 RLVGMNQQQGKGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQELLLFMV 483
Score = 117 bits (250), Expect = 3e-025
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = -3 / +2
Query: 595 *RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTD 440
*RAA+PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPT D
Sbjct: 488 *RAATPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTCVD 643
Score = 106 bits (226), Expect = 6e-022
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -1 / +3
Query: 600 HHEEQQVLNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAFLLRLIHPNQP 448
+HEEQQ+LNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAF L LIHPNQP
Sbjct: 483 YHEEQQLLNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAFPLLLIHPNQP 635
Score = 104 bits (221), Expect = 3e-021
Identities = 47/52 (90%), Positives = 48/52 (92%)
Frame = +2 / -1
Query: 440 ISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFRTCCSS 595
I GWLG*IN R KAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFR+CCSS
Sbjct: 643 IYTGWLG*INSRGKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFRSCCSS 488
>gb|CW187057.1|CW187057 104_605_11166892_148_36719_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166892, DNA
sequence
Length = 738
Score = 132 bits (282), Expect = 1e-029
Identities = 51/59 (86%), Positives = 53/59 (89%)
Frame = +3 / -3
Query: 441 SVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGLAALHDDSNALM 617
S +VGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSG+AALH LM
Sbjct: 541 STQVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGVAALHGTLQILM 365
Score = 129 bits (276), Expect = 8e-029
Identities = 51/70 (72%), Positives = 55/70 (78%)
Frame = -2 / +2
Query: 656 RMKAPFTGYSSQPHQSIAVIMKSSKS*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF 477
+ K +T S H+ + MKSS S*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF
Sbjct: 326 QQKRCWTQRYSNKHEYLKCTMKSSNS*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF 505
Query: 476 SCG*FIPTNL 447
C *FIPTNL
Sbjct: 506 PCC*FIPTNL 535
Score = 119 bits (254), Expect = 8e-026
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = +1 / -1
Query: 448 RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQDLLLFMM 600
RLVGMNQ Q KGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQ+LLLFM+
Sbjct: 534 RLVGMNQQQGKGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQELLLFMV 382
Score = 117 bits (250), Expect = 3e-025
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = -3 / +3
Query: 595 *RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTD 440
*RAA+PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPT D
Sbjct: 387 *RAATPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTCVD 542
Score = 106 bits (226), Expect = 6e-022
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -1 / +1
Query: 600 HHEEQQVLNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAFLLRLIHPNQP 448
+HEEQQ+LNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAF L LIHPNQP
Sbjct: 382 YHEEQQLLNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAFPLLLIHPNQP 534
Score = 104 bits (221), Expect = 3e-021
Identities = 47/52 (90%), Positives = 48/52 (92%)
Frame = +2 / -2
Query: 440 ISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFRTCCSS 595
I GWLG*IN R KAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFR+CCSS
Sbjct: 542 IYTGWLG*INSRGKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFRSCCSS 387
>gb|CW241828.1|CW241828 104_701_11218990_148_37557_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218990, DNA
sequence
Length = 722
Score = 132 bits (282), Expect = 1e-029
Identities = 51/59 (86%), Positives = 53/59 (89%)
Frame = +3 / -3
Query: 441 SVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGLAALHDDSNALM 617
S +VGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSG+AALH LM
Sbjct: 363 STQVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGVAALHGTLQILM 187
Score = 129 bits (276), Expect = 8e-029
Identities = 51/70 (72%), Positives = 55/70 (78%)
Frame = -2 / +1
Query: 656 RMKAPFTGYSSQPHQSIAVIMKSSKS*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF 477
+ K +T S H+ + MKSS S*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF
Sbjct: 148 QQKRCWTQRYSNKHEYLKCTMKSSNS*IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPF 327
Query: 476 SCG*FIPTNL 447
C *FIPTNL
Sbjct: 328 PCC*FIPTNL 357
Score = 119 bits (254), Expect = 8e-026
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = +1 / -1
Query: 448 RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQDLLLFMM 600
RLVGMNQ Q KGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQ+LLLFM+
Sbjct: 356 RLVGMNQQQGKGHLEFLCGKLSH*QPFLCIHPCSHCELSILGIQELLLFMV 204
Score = 117 bits (250), Expect = 3e-025
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = -3 / +2
Query: 595 *RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTD 440
*RAA+PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPT D
Sbjct: 209 *RAATPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTCVD 364
Score = 106 bits (226), Expect = 6e-022
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = -1 / +3
Query: 600 HHEEQQVLNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAFLLRLIHPNQP 448
+HEEQQ+LNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAF L LIHPNQP
Sbjct: 204 YHEEQQLLNTKDA*LAVGTGMDT*ERLSVAQFPTEKL*VAFPLLLIHPNQP 356
Score = 104 bits (221), Expect = 3e-021
Identities = 47/52 (90%), Positives = 48/52 (92%)
Frame = +2 / -2
Query: 440 ISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFRTCCSS 595
I GWLG*IN R KAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFR+CCSS
Sbjct: 364 IYTGWLG*INSRGKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLVFRSCCSS 209
>gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_27_B07_A007 5', mRNA sequence
Length = 658
Score = 62.9 bits (131), Expect(3) = 3e-028
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +3 / +2
Query: 420 WPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHP 569
WP S WR +KV WDE + RP RVS W+IEP ++ P+ P RVK P
Sbjct: 257 WPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLPLSSRVKRP 406
Score = 57.9 bits (120), Expect(3) = 3e-028
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 171 SMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
SMH+G+L T S FT++Y PR SP+EF+IP +Y+++V
Sbjct: 14 SMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESV 145
Score = 44.1 bits (90), Expect(3) = 3e-028
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +3 / +2
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSY 434
S+GMRFRM FE EE+ +R+ GTI + DP+ SS+
Sbjct: 158 SIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSW 274
>gb|BI643705.1|BI643705 IP1_56_A06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 488
Score = 122 bits (260), Expect = 1e-026
Identities = 48/94 (51%), Positives = 66/94 (70%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVSAKRLVAGD+ +F+ E +L +G+R A R QT +PSSV+SS SMH+G+L
Sbjct: 186 SGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRALRHQTTIPSSVISSHSMHLGVLATA 365
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T S FT++Y PR SP EFV+ +Y +++
Sbjct: 366 WHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESL 467
>gb|CW139789.1|CW139789 104_530_11135433_116_34912_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135433, DNA
sequence
Length = 639
Score = 78.5 bits (165), Expect(2) = 4e-026
Identities = 32/49 (65%), Positives = 40/49 (81%)
Frame = +3 / -1
Query: 231 TIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRY 377
T F RASP+EFVIP +KY KAV+ ++S+GMRFRM+FETEES+ RRY
Sbjct: 447 TAFIPFRASPSEFVIPFAKYQKAVYSNQLSLGMRFRMMFETEESATRRY 301
Score = 61.6 bits (128), Expect(2) = 4e-026
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +3 / -3
Query: 117 RHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
R A R + SSVLSSDSMHIG+L NS+FT+FYNPR
Sbjct: 637 RRANRQPVNLSSSVLSSDSMHIGILAAAAHAAANNSQFTVFYNPR 503
>gb|BM322337.1|BM322337 PIC1_3_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 388
Score = 79.4 bits (167), Expect(2) = 4e-026
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +3 / +1
Query: 102 LLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPL 281
L +G+R A R Q +PSSV+SS SMH+G+L T + FT++Y PR SP EFV+P
Sbjct: 10 LRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPC 189
Query: 282 SKYIKAV 302
+Y +++
Sbjct: 190 DRYTESL 210
Score = 60.6 bits (126), Expect(2) = 4e-026
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = +3 / +1
Query: 321 VGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTA 473
+GMRF+M FE EE+ +R+ GTI D + W S WR +KV WDE+++
Sbjct: 226 IGMRFKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLKVRWDEASS 378
>gb|AW563919.1|AW563919 LG1_275_E08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 83.5 bits (176), Expect(3) = 1e-022
Identities = 36/94 (38%), Positives = 54/94 (57%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS FV+ K+LV+GD+VLF+ E L LG+R A + + V P L + L
Sbjct: 18 TGWSAFVNKKKLVSGDAVLFLRGEDGVLRLGVRRAAQLKIVTPIPALHNQCSSQTTLGNV 197
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + F I+YNPR S +EF++P K+ +++
Sbjct: 198 AQAVATRTVFHIYYNPRLSQSEFIVPYWKFTRSL 299
Score = 40.0 bits (81), Expect(3) = 1e-022
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3 / +3
Query: 315 ISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSY 434
ISVGMR RM +E++++S RR G I +A+P+ + S +
Sbjct: 309 ISVGMRCRMRYESDDASERRCTGIIIGSREAEPIWYGSKW 428
Score = 22.1 bits (42), Expect(3) = 1e-022
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +3 / +3
Query: 420 WPSSYWRSVKVGWDE 464
W S W+ + V WD+
Sbjct: 411 WYGSKWKCLVVRWDD 455
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,213,638,019
Number of Sequences: 832831
Number of extensions: 17488534
Number of successful extensions: 108489
Number of sequences better than 1.0e-020: 33
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 33860504237
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)