TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969912.2.1
(507 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG557816.1|BG557816 EM1_53_F09.b1_A002 Embryo 1 (EM1) So... 234 8e-061
gb|CF756225.1|CF756225 DSAF1_4_G03.b1_A011 Drought-stressed... 211 5e-054
gb|CW044414.1|CW044414 104_280_10508936_115_30243 Sorghum m... 138 3e-053
gb|CF756413.1|CF756413 DSAF1_5_H08.b1_A011 Drought-stressed... 207 8e-053
gb|BE592843.1|BE592843 WS1_91_B04.b1_A002 Water-stressed 1 ... 116 2e-043
gb|CW456088.1|CW456088 fsbb001f201e14f0 Sorghum methylation... 130 2e-041
gb|CW489883.1|CW489883 fsbb001f275a24k0 Sorghum methylation... 149 4e-035
gb|CB925802.1|CB925802 ABA1_23_F05.g1_A012 Abscisic acid-tr... 91 1e-030
gb|CF428334.1|CF428334 PH1_14_C04.g1_A002 Phosphorous-defic... 91 3e-030
gb|CN145669.1|CN145669 WOUND1_34_B03.g1_A002 Wounded leaves... 88 4e-027
gb|CX607102.1|CX607102 ANR1_6_E09.g1_A002 Anaerobic roots S... 99 6e-027
gb|CW487378.1|CW487378 fsbb001f253d08k0 Sorghum methylation... 71 3e-026
gb|CD431095.1|CD431095 ETH1_6_A10.g1_A002 Ethylene-treated ... 93 9e-026
emb|AX512962.1| Sequence 7 from Patent WO02063021 60 1e-024
gb|CN132335.1|CN132335 OX1_5_C03.g1_A002 Oxidatively-stress... 80 2e-024
gb|AW922257.1|AW922257 DG1_17_G01.b1_A002 Dark Grown 1 (DG1... 72 1e-023
gb|CB925645.1|CB925645 ABA1_22_G02.g1_A012 Abscisic acid-tr... 69 2e-023
gb|CN152656.1|CN152656 WOUND1_83_A06.g1_A002 Wounded leaves... 48 7e-023
gb|CD225805.1|CD225805 CCC1_41_H04.g1_A007 Callus culture/c... 48 7e-023
gb|CF480908.1|CF480908 POL1_68_F11.g1_A002 Pollen Sorghum b... 47 6e-022
gb|CN147237.1|CN147237 WOUND1_48_B05.g1_A002 Wounded leaves... 69 6e-022
gb|BE359158.1|BE359158 DG1_39_C02.b1_A002 Dark Grown 1 (DG1... 84 6e-022
gb|CB926819.1|CB926819 ABA1_10_G05.g1_A012 Abscisic acid-tr... 69 6e-022
gb|CW454707.1|CW454707 fsbb001f199e17f0 Sorghum methylation... 63 2e-021
gb|BE360688.1|BE360688 DG1_66_C04.b2_A002 Dark Grown 1 (DG1... 103 2e-021
gb|CF758652.1|CF758652 DSAF1_35_A01.g1_A011 Drought-stresse... 68 8e-021
>gb|BG557816.1|BG557816 EM1_53_F09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 234 bits (505), Expect = 8e-061
Identities = 100/129 (77%), Positives = 104/129 (80%)
Frame = +3 / +2
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDHXXXXXXXXXXXRLSFFRCXXXX 182
VTGASGFIGSTLVRGLLGRGYNVRAGVL+PDDRAETDH RLSFFRC
Sbjct: 83 VTGASGFIGSTLVRGLLGRGYNVRAGVLNPDDRAETDHLLDLAAGAGDGRLSFFRCDLLD 262
Query: 183 XXXXXXXXRGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVT 362
RGCSG+FHLASPCTVDPVKDPQNQLMVPAVEGT NVVRA KDAGGVRRVVVT
Sbjct: 263 GAALLDAARGCSGIFHLASPCTVDPVKDPQNQLMVPAVEGTRNVVRAAKDAGGVRRVVVT 442
Query: 363 SSISAVVPN 389
SSISA+VP+
Sbjct: 443 SSISAMVPS 469
Score = 142 bits (304), Expect(2) = 8e-036
Identities = 66/100 (66%), Positives = 66/100 (66%)
Frame = -3 / -3
Query: 388 LGTTAEMDEVTTTRRTPPASLXARTTFSVPSTAGTIS*FWGSLTGSTVQGDARWKTPEHX 209
LGT AEMDEVTTTRRTPPASL ARTTF VPSTAGTIS*FWGSLTGSTVQGDARWK PEH
Sbjct: 468 LGTMAEMDEVTTTRRTPPASLAARTTFRVPSTAGTIS*FWGSLTGSTVQGDARWKIPEHP 289
Query: 208 XXXXXXXXXXXXSQRKKLXXXXXXXXXXXXXXXXXALSSG 89
SQRKKL ALSSG
Sbjct: 288 RAASSSAAPSRRSQRKKLRRPSPAPAARSRRWSVSALSSG 169
Score = 29.0 bits (57), Expect(2) = 8e-036
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / -3
Query: 34 VEPMKPLAPVT 2
VEPMKPLAPVT
Sbjct: 114 VEPMKPLAPVT 82
>gb|CF756225.1|CF756225 DSAF1_4_G03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_4_G03_A011 5', mRNA sequence
Length = 537
Score = 211 bits (456), Expect = 5e-054
Identities = 83/100 (83%), Positives = 89/100 (89%)
Frame = +3 / +1
Query: 207 RGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVP 386
RGCSGVFHLASPC VD V DPQ QL+VPAVEGTLNV+RA K+AG VRRVVVTSS A++P
Sbjct: 46 RGCSGVFHLASPCIVDAVSDPQKQLIVPAVEGTLNVLRAAKEAGSVRRVVVTSSSCAIMP 225
Query: 387 NPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
+PGWPAGEV DERCWTDIDY EKNGVWYP SKTLAEKAAW
Sbjct: 226 SPGWPAGEVRDERCWTDIDYSEKNGVWYPVSKTLAEKAAW 345
Score = 166 bits (358), Expect = 2e-040
Identities = 71/97 (73%), Positives = 76/97 (78%)
Frame = -3 / -2
Query: 505 HAAFSASVLEAGYQTPFFXXXXXXXXXXXXXXSPAGHPGLGTTAEMDEVTTTRRTPPASL 326
HAAFSASVLE GYQTPFF SPAGHPGLG A++DEVTTTRRT PASL
Sbjct: 344 HAAFSASVLETGYQTPFFSL*SMSVQQRSSRTSPAGHPGLGMMAQLDEVTTTRRTLPASL 165
Query: 325 XARTTFSVPSTAGTIS*FWGSLTGSTVQGDARWKTPE 215
AR+TFSVPSTAGTIS FWGSLT ST+QG+ARWKTPE
Sbjct: 164 AARSTFSVPSTAGTISCFWGSLTASTMQGEARWKTPE 54
>gb|CW044414.1|CW044414 104_280_10508936_115_30243 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508936, DNA
sequence
Length = 547
Score = 138 bits (296), Expect(2) = 3e-053
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +3 / +1
Query: 270 QNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYC 449
QNQLMVPAVEGT NVVRA KDAGGVRRVVVTSSISA+VP+PGWPAGEV+DERCWTDIDYC
Sbjct: 367 QNQLMVPAVEGTRNVVRAAKDAGGVRRVVVTSSISAMVPSPGWPAGEVLDERCWTDIDYC 546
Score = 100 bits (213), Expect(3) = 4e-037
Identities = 43/48 (89%), Positives = 43/48 (89%)
Frame = -3 / -3
Query: 406 PAGHPGLGTTAEMDEVTTTRRTPPASLXARTTFSVPSTAGTIS*FWGS 263
PAGHPGLGT AEMDEVTTTRRTPPASL ARTTF VPSTAGTIS*F S
Sbjct: 503 PAGHPGLGTMAEMDEVTTTRRTPPASLAARTTFRVPSTAGTIS*FCNS 360
Score = 90.9 bits (192), Expect(2) = 3e-053
Identities = 36/60 (60%), Positives = 37/60 (61%)
Frame = +3 / +3
Query: 93 DDRAETDHXXXXXXXXXXXRLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQ 272
DDRAETDH RLSFFRC RGCSG+FHLASPCTVDPVKDPQ
Sbjct: 72 DDRAETDHLLDLAAGAGDGRLSFFRCDLLDGAALLDAARGCSGIFHLASPCTVDPVKDPQ 251
Score = 61.1 bits (127), Expect(3) = 4e-037
Identities = 25/39 (64%), Positives = 25/39 (64%)
Frame = -3 / -1
Query: 271 WGSLTGSTVQGDARWKTPEHXXXXXXXXXXXXXSQRKKL 155
WGSLTGSTVQGDARWK PEH SQRKKL
Sbjct: 250 WGSLTGSTVQGDARWKIPEHPRAASSSAAPSRRSQRKKL 134
Score = 32.2 bits (64), Expect(3) = 4e-037
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / -2
Query: 449 AVVDVGPATLVDDL 408
AVVDVGPATLV+DL
Sbjct: 546 AVVDVGPATLVEDL 505
>gb|CF756413.1|CF756413 DSAF1_5_H08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_5_H08_A011 5', mRNA sequence
Length = 368
Score = 207 bits (447), Expect = 8e-053
Identities = 82/100 (82%), Positives = 88/100 (88%)
Frame = +3 / +1
Query: 207 RGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVP 386
RGCSGVFHLASPC VD V DPQ QL+VPAVEGTLNV+RA K+AG VRRVVVTSS A++P
Sbjct: 46 RGCSGVFHLASPCIVDAVSDPQKQLIVPAVEGTLNVLRAAKEAGSVRRVVVTSSSCAIMP 225
Query: 387 NPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
+PGWPAGEV DERCWTDI Y EKNGVWYP SKTLAEKAAW
Sbjct: 226 SPGWPAGEVRDERCWTDIYYSEKNGVWYPVSKTLAEKAAW 345
Score = 165 bits (354), Expect = 5e-040
Identities = 71/97 (73%), Positives = 76/97 (78%)
Frame = -3 / -1
Query: 505 HAAFSASVLEAGYQTPFFXXXXXXXXXXXXXXSPAGHPGLGTTAEMDEVTTTRRTPPASL 326
HAAFSASVLE GYQTPFF SPAGHPGLG A++DEVTTTRRT PASL
Sbjct: 344 HAAFSASVLETGYQTPFFSL**MSVQQRSSRTSPAGHPGLGMMAQLDEVTTTRRTLPASL 165
Query: 325 XARTTFSVPSTAGTIS*FWGSLTGSTVQGDARWKTPE 215
AR+TFSVPSTAGTIS FWGSLT ST+QG+ARWKTPE
Sbjct: 164 AARSTFSVPSTAGTISCFWGSLTASTMQGEARWKTPE 54
>gb|BE592843.1|BE592843 WS1_91_B04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 469
Score = 116 bits (247), Expect(2) = 2e-043
Identities = 50/79 (63%), Positives = 55/79 (69%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXK 329
RL FR RGCSGVFHLASPC VD V DPQ QL+VPAVEGTLNV+RA K
Sbjct: 232 RLRIFRGDLLDGAALIDAARGCSGVFHLASPCIVDAVSDPQKQLIVPAVEGTLNVLRAAK 411
Query: 330 DAGGVRRVVVTSSISAVVP 386
+AG VRRVVVTS A++P
Sbjct: 412 EAGSVRRVVVTSXSCAIMP 468
Score = 109 bits (232), Expect(2) = 8e-026
Identities = 48/75 (64%), Positives = 53/75 (70%)
Frame = -3 / -3
Query: 385 GTTAEMDEVTTTRRTPPASLXARTTFSVPSTAGTIS*FWGSLTGSTVQGDARWKTPEHXX 206
G A++ EVTTTRRT PASL AR+TFSVPSTAGTIS FWGSLT ST+QG+ARWKTPE
Sbjct: 467 GMMAQLXEVTTTRRTLPASLAARSTFSVPSTAGTISCFWGSLTASTMQGEARWKTPEQPR 288
Query: 205 XXXXXXXXXXXSQRK 161
S RK
Sbjct: 287 AASISAAPSRRSPRK 243
Score = 80.3 bits (169), Expect(2) = 2e-043
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDH 116
VTGASGFIGSTLVR LLGRGYNV AGVL+PDD+AET+H
Sbjct: 79 VTGASGFIGSTLVRLLLGRGYNVHAGVLNPDDKAETEH 192
Score = 29.0 bits (57), Expect(2) = 8e-026
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -3 / -3
Query: 34 VEPMKPLAPVT 2
VEPMKPLAPVT
Sbjct: 110 VEPMKPLAPVT 78
>gb|CW456088.1|CW456088 fsbb001f201e14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201e14, DNA
sequence
Length = 652
Score = 130 bits (279), Expect(3) = 2e-041
Identities = 52/65 (80%), Positives = 58/65 (89%)
Frame = +3 / -3
Query: 270 QNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYC 449
Q QL+VPAVEGTLNV+RA K+AG VRRVVVTSS A++P+PGWPAGEV DERCWTDIDY
Sbjct: 347 QKQLIVPAVEGTLNVLRAAKEAGSVRRVVVTSSSCAIMPSPGWPAGEVRDERCWTDIDYS 168
Query: 450 EKNGV 464
EKNGV
Sbjct: 167 EKNGV 153
Score = 93.6 bits (198), Expect(2) = 1e-026
Identities = 42/64 (65%), Positives = 45/64 (70%)
Frame = -3 / +1
Query: 463 TPFFXXXXXXXXXXXXXXSPAGHPGLGTTAEMDEVTTTRRTPPASLXARTTFSVPSTAGT 284
TPFF SPAGHPGLG A++DEVTTTRRT PASL AR+TFSVPSTAGT
Sbjct: 154 TPFFSL*SMSVQQRSSRTSPAGHPGLGMMAQLDEVTTTRRTLPASLAARSTFSVPSTAGT 333
Query: 283 IS*F 272
IS F
Sbjct: 334 ISCF 345
Score = 55.1 bits (114), Expect(3) = 2e-041
Identities = 23/41 (56%), Positives = 23/41 (56%)
Frame = +3 / -2
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQ 272
RL FR RGCSGVFHLASPC VD V DPQ
Sbjct: 567 RLRIFRGDLLDGAALIDAARGCSGVFHLASPCIVDAVSDPQ 445
Score = 46.9 bits (96), Expect(2) = 1e-026
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = -3 / +2
Query: 271 WGSLTGSTVQGDARWKTPEHXXXXXXXXXXXXXSQRK 161
WGSLT ST+QG+ARWKTPE S RK
Sbjct: 446 WGSLTASTMQGEARWKTPEQPRAASISAAPSRRSPRK 556
Score = 22.6 bits (43), Expect(3) = 2e-041
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3 / -2
Query: 87 DPDDRAETDH 116
D DD+AET+H
Sbjct: 636 DADDKAETEH 607
>gb|CW489883.1|CW489883 fsbb001f275a24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275a24, DNA
sequence
Length = 278
Score = 149 bits (319), Expect = 4e-035
Identities = 62/77 (80%), Positives = 66/77 (85%)
Frame = +3 / -2
Query: 270 QNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYC 449
QN LMVPAVEGT NVVRA KDAGGVRRVVVTSSISA+VP+PGWPAGEV+DERCWTDIDYC
Sbjct: 265 QNHLMVPAVEGTRNVVRAAKDAGGVRRVVVTSSISAMVPSPGWPAGEVLDERCWTDIDYC 86
Query: 450 EKNGVWYPASKTLAEKA 500
EKNGV + T A A
Sbjct: 85 EKNGVSFAYLPTPAAPA 35
>gb|CB925802.1|CB925802 ABA1_23_F05.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_23_F05_A012 5', mRNA sequence
Length = 645
Score = 90.9 bits (192), Expect(3) = 1e-030
Identities = 33/56 (58%), Positives = 43/56 (76%)
Frame = +3 / +3
Query: 339 GVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
GV RVV+ SS +A+VPNP WP G+V+D+ CW D++ +K +WY SKTLAEKAAW
Sbjct: 435 GVGRVVLMSSQAAMVPNPNWPPGKVIDDDCWADVELLKKLQLWYSVSKTLAEKAAW 602
Score = 54.2 bits (112), Expect(3) = 1e-030
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / +3
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDHXXXXXXXXXXXRL 155
VTGASGFIGS LVR LL RGY V A V + D ET H RL
Sbjct: 111 VTGASGFIGSWLVRCLLDRGYTVHATVKNLQDEGETKHLQAMGGADARLRL 263
Score = 26.3 bits (51), Expect(3) = 1e-030
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3 / +3
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASP 242
RL F+ G GVFHLASP
Sbjct: 252 RLRLFQMDLVDPASVQPAIEGAHGVFHLASP 344
>gb|CF428334.1|CF428334 PH1_14_C04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_14_C04_A002 5', mRNA sequence
Length = 659
Score = 90.9 bits (192), Expect(3) = 3e-030
Identities = 33/56 (58%), Positives = 43/56 (76%)
Frame = +3 / +1
Query: 339 GVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
GV RVV+ SS +A+VPNP WP G+V+D+ CW D++ +K +WY SKTLAEKAAW
Sbjct: 454 GVGRVVLMSSQAAMVPNPNWPPGKVIDDDCWADVELLKKLQLWYSVSKTLAEKAAW 621
Score = 54.2 bits (112), Expect(3) = 3e-030
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDHXXXXXXXXXXXRL 155
VTGASGFIGS LVR LL RGY V A V + D ET H RL
Sbjct: 130 VTGASGFIGSWLVRCLLDRGYTVHATVKNLQDEGETKHLQAMGGADARLRL 282
Score = 25.4 bits (49), Expect(3) = 3e-030
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASP 242
RL F+ G GVFHLASP
Sbjct: 271 RLRLFQMDLVDPAPVQPAIEGAHGVFHLASP 363
>gb|CN145669.1|CN145669 WOUND1_34_B03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_34_B03_A002 5', mRNA sequence
Length = 737
Score = 87.7 bits (185), Expect(2) = 4e-027
Identities = 35/56 (62%), Positives = 42/56 (75%)
Frame = +3 / +2
Query: 339 GVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
GV RVV+ SS +A+VPNP WPA +VVDE W DI+ +K +WY SKTLAEKAAW
Sbjct: 422 GVGRVVMVSSQTAMVPNPAWPADKVVDEDSWADIEQLKKLQLWYNVSKTLAEKAAW 589
Score = 55.6 bits (115), Expect(2) = 4e-027
Identities = 27/51 (52%), Positives = 29/51 (56%)
Frame = +3 / +2
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDHXXXXXXXXXXXRL 155
VTG SGFIGS LVR LLGRGY V A V + D +ET H RL
Sbjct: 95 VTGGSGFIGSWLVRLLLGRGYTVHATVKNLQDESETKHLQAMDGANSRLRL 247
>gb|CX607102.1|CX607102 ANR1_6_E09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_E09_A002 5', mRNA sequence
Length = 742
Score = 99.1 bits (210), Expect(2) = 6e-027
Identities = 43/87 (49%), Positives = 54/87 (62%)
Frame = +3 / +2
Query: 246 TVDPVKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDER 425
T PV D Q++ PAV GT V+ A +AG VRRVV TSSI AV +P VVDE
Sbjct: 428 TGSPVTDDPEQMVEPAVRGTEYVINAAAEAGTVRRVVFTSSIGAVTMDPSRGPDVVVDES 607
Query: 426 CWTDIDYCEKNGVWYPASKTLAEKAAW 506
CW+D+ +C+K WY K +AE+AAW
Sbjct: 608 CWSDL*FCKKTRNWYCYGKAVAEQAAW 688
Score = 43.7 bits (89), Expect(2) = 6e-027
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +3 / +2
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDD 98
VTGA+G+I S LV+ LL +GY V+ V +PDD
Sbjct: 209 VTGAAGYIASWLVKMLLEKGYTVKGTVWNPDD 304
>gb|CW487378.1|CW487378 fsbb001f253d08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253d08, DNA
sequence
Length = 694
Score = 70.7 bits (148), Expect(2) = 3e-026
Identities = 28/52 (53%), Positives = 29/52 (55%)
Frame = +3 / +3
Query: 93 DDRAETDHXXXXXXXXXXXRLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCT 248
DDRAETDH RLSFFRC RGCSG+FHLASPCT
Sbjct: 537 DDRAETDHLLDLAAGAGDGRLSFFRCDLLDGAALLDAARGCSGIFHLASPCT 692
Score = 69.8 bits (146), Expect(2) = 3e-026
Identities = 29/30 (96%), Positives = 30/30 (100%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDP 92
VTGASGFIGSTLVRGLLGRGYNVRAGVL+P
Sbjct: 313 VTGASGFIGSTLVRGLLGRGYNVRAGVLNP 402
>gb|CD431095.1|CD431095 ETH1_6_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_A10_A002 5', mRNA sequence
Length = 681
Score = 92.7 bits (196), Expect(2) = 9e-026
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +3 / +3
Query: 246 TVDPVKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDER 425
T PV D +++ PAV GT ++ A +AG VRRVV+TSSI AV +P VVDE
Sbjct: 435 TASPVTDDPEEMVEPAVTGTRYIIDAAAEAGTVRRVVLTSSIGAVAMDPNRSPDAVVDES 614
Query: 426 CWTDIDYCEKNGVWYPASKTLA 491
CW+D+D+C+K WY K +A
Sbjct: 615 CWSDLDFCKKTKNWYCYXKAVA 680
Score = 46.0 bits (94), Expect(2) = 9e-026
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +3 / +3
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDD 98
VTGA G++GS +V+ LL RGY VR V +PDD
Sbjct: 216 VTGAGGYVGSWIVKLLLERGYAVRGTVRNPDD 311
>emb|AX512962.1| Sequence 7 from Patent WO02063021
Length = 697
Score = 60.2 bits (125), Expect(3) = 1e-024
Identities = 30/77 (38%), Positives = 38/77 (49%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXK 329
RL R C GVFH ASP + + + PAV GTLNV+R+ K
Sbjct: 142 RLQIVRADLLEEGSFDNAVMDCDGVFHTASPVLAKSDSSSKEETLCPAVNGTLNVLRSCK 321
Query: 330 DAGGVRRVVVTSSISAV 380
++RVV+TSS SAV
Sbjct: 322 KNPFLKRVVLTSSSSAV 372
Score = 46.0 bits (94), Expect(3) = 1e-024
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / +1
Query: 414 VDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
+DE W+ + CEK +WY +K AEKAAW
Sbjct: 406 LDETTWSSVPLCEKMQLWYALAKVFAEKAAW 498
Score = 45.1 bits (92), Expect(3) = 1e-024
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDH 116
VTGASGFI S L++ LL GY+V V DP + +T H
Sbjct: 1 VTGASGFIASWLIKRLLESGYHVVGTVRDPGNHQKTAH 114
>gb|CN132335.1|CN132335 OX1_5_C03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_5_C03_A002 5', mRNA sequence
Length = 626
Score = 79.9 bits (168), Expect(3) = 2e-024
Identities = 30/57 (52%), Positives = 40/57 (70%)
Frame = +3 / +3
Query: 333 AGGVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAA 503
A V++VVV SS +AV NP WP G + DE CW+D ++C KN WY A+KT+AE+ A
Sbjct: 384 ANNVQKVVVVSSTAAVHYNPSWPHGRIKDESCWSDKNFCMKNENWYTAAKTIAEETA 554
Score = 42.3 bits (86), Expect(3) = 2e-024
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDD 98
VTG G++ S LV+ LL RGY V A V DP D
Sbjct: 67 VTGGGGYVASWLVKLLLSRGYAVHATVRDPSD 162
Score = 28.6 bits (56), Expect(3) = 2e-024
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3 / +1
Query: 153 LSFFRCXXXXXXXXXXXXRGCSGVFHLASP 242
L F+ GC GVFH+ASP
Sbjct: 208 LLLFKADVLDRDALAAAVAGCEGVFHVASP 297
>gb|AW922257.1|AW922257 DG1_17_G01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 71.6 bits (150), Expect(3) = 1e-023
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +3 / +2
Query: 339 GVRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
GV+RVV TSSI V NP + VD+ CW+D++YC+ WY +KT+AE+ AW
Sbjct: 320 GVKRVVFTSSIGTVYMNPYREPNKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQGAW 487
Score = 42.3 bits (86), Expect(3) = 1e-023
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +3 / +2
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDD 98
VTGA GFI S LV+ LL +GY VR V +P D
Sbjct: 11 VTGAGGFIASWLVKRLLEKGYTVRGTVRNPVD 106
Score = 33.6 bits (67), Expect(3) = 1e-023
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3 / +2
Query: 210 GCSGVFHLASPCTVDP 257
GC GVFH ASP T DP
Sbjct: 209 GCDGVFHAASPVTDDP 256
>gb|CB925645.1|CB925645 ABA1_22_G02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_22_G02_A012 5', mRNA sequence
Length = 582
Score = 68.9 bits (144), Expect(3) = 2e-023
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +3 / +3
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXK 329
RL F+ G GVFH+ASP + +DP+N+L+ PA++GTL+V+RA K
Sbjct: 243 RLRLFQMDLLEPASIRPAVEGARGVFHVASPVILHRAQDPENELVEPALKGTLSVLRAAK 422
Query: 330 DAGGVRRVVVTSSISAV 380
D G R V+V+S + V
Sbjct: 423 DCGVGRVVMVSSQTAMV 473
Score = 55.6 bits (115), Expect(3) = 2e-023
Identities = 27/51 (52%), Positives = 29/51 (56%)
Frame = +3 / +3
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDHXXXXXXXXXXXRL 155
VTG SGFIGS LVR LLGRGY V A V + D +ET H RL
Sbjct: 102 VTGGSGFIGSWLVRLLLGRGYTVHATVKNLQDESETKHLQAMDGANSRLRL 254
Score = 22.6 bits (43), Expect(3) = 2e-023
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +1
Query: 430 GPTSTTARRTGFGTLLP 480
GPT +++R FGT P
Sbjct: 520 GPTLSSSRNFSFGTTSP 570
>gb|CN152656.1|CN152656 WOUND1_83_A06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_83_A06_A002 5', mRNA sequence
Length = 857
Score = 48.3 bits (99), Expect(4) = 7e-023
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDH 116
VTGASG+I S +VR LL RGY VRA V D D +T H
Sbjct: 148 VTGASGYIASWIVRLLLDRGYTVRATVRDTADPKKTLH 261
Score = 47.3 bits (97), Expect(4) = 7e-023
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = +3 / +1
Query: 414 VDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
VDE +TD CEK WY SKTLAE+AAW
Sbjct: 550 VDETWFTDPQICEKTQQWYVLSKTLAEQAAW 642
Score = 39.6 bits (80), Expect(4) = 7e-023
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / +1
Query: 258 VKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTS 365
VKDP+ +L+ PAV+GTLNV+ + K A + V+ +S
Sbjct: 394 VKDPKAELLDPAVKGTLNVLGSCKKASITKVVITSS 501
Score = 27.2 bits (53), Expect(4) = 7e-023
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASP 242
RL F+ GC VFH ASP
Sbjct: 289 RLHLFKASLLEEGSFDAAVHGCDTVFHTASP 381
>gb|CD225805.1|CD225805 CCC1_41_H04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_H04_A007 5', mRNA sequence
Length = 659
Score = 48.3 bits (99), Expect(4) = 7e-023
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +3 / +3
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDH 116
VTGASG+I S +VR LL RGY VRA V D D +T H
Sbjct: 159 VTGASGYIASWIVRLLLDRGYTVRATVRDTADPKKTLH 272
Score = 47.3 bits (97), Expect(4) = 7e-023
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = +3 / +3
Query: 414 VDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
VDE +TD CEK WY SKTLAE+AAW
Sbjct: 561 VDETWFTDPQICEKTQQWYVLSKTLAEQAAW 653
Score = 39.6 bits (80), Expect(4) = 7e-023
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / +3
Query: 258 VKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTS 365
VKDP+ +L+ PAV+GTLNV+ + K A + V+ +S
Sbjct: 405 VKDPKAELLDPAVKGTLNVLGSCKKASITKVVITSS 512
Score = 27.2 bits (53), Expect(4) = 7e-023
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3 / +3
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASP 242
RL F+ GC VFH ASP
Sbjct: 300 RLHLFKASLLEEGSFDAAVHGCDTVFHTASP 392
>gb|CF480908.1|CF480908 POL1_68_F11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_F11_A002 5', mRNA sequence
Length = 773
Score = 47.3 bits (97), Expect(4) = 6e-022
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = +3 / +1
Query: 414 VDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
VDE +TD CEK WY SKTLAE+AAW
Sbjct: 532 VDETWFTDPQICEKTQQWYVLSKTLAEQAAW 624
Score = 45.1 bits (92), Expect(4) = 6e-022
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDD 98
VTGASG+I S +VR LL RGY VRA V D D
Sbjct: 167 VTGASGYIASWIVRLLLDRGYTVRATVRDTAD 262
Score = 39.6 bits (80), Expect(4) = 6e-022
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / +1
Query: 258 VKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTS 365
VKDP+ +L+ PAV+GTLNV+ + K A + V+ +S
Sbjct: 376 VKDPKAELLDPAVKGTLNVLGSCKKASITKVVITSS 483
Score = 27.2 bits (53), Expect(4) = 6e-022
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASP 242
RL F+ GC VFH ASP
Sbjct: 271 RLHLFKASLLEEGSFDAAVHGCDTVFHTASP 363
>gb|CN147237.1|CN147237 WOUND1_48_B05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_B05_A002 5', mRNA sequence
Length = 737
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXK 329
RL F+ G GVFH+ASP + +DP+N+L+ PA++GTL+V+RA K
Sbjct: 268 RLRLFQMDLLEPASIRPAVEGARGVFHVASPVILHRAQDPENELVEPALKGTLSVLRAAK 447
Query: 330 DAGGVRRVVVTSSISAV 380
D G R V+V+S + V
Sbjct: 448 DCGVGRVVMVSSQTAMV 498
Score = 55.6 bits (115), Expect(2) = 6e-022
Identities = 27/51 (52%), Positives = 29/51 (56%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDHXXXXXXXXXXXRL 155
VTG SGFIGS LVR LLGRGY V A V + D +ET H RL
Sbjct: 127 VTGGSGFIGSWLVRLLLGRGYTVHATVKNLQDESETKHLQAMDGANSRLRL 279
>gb|BE359158.1|BE359158 DG1_39_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 84.0 bits (177), Expect(2) = 6e-022
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +3 / +3
Query: 210 GCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPN 389
GC GV H+A+P + + DP+ Q++ PAV GT NV++A A R VVV+S ++ +
Sbjct: 318 GCQGVLHVATPVPSENLTDPELQMLGPAVTGTTNVLKAASAANVQRVVVVSSMVAVEISP 497
Query: 390 PGWPAGEVVDERCWTD 437
WP G++ DE CW+D
Sbjct: 498 KDWPEGKIRDESCWSD 545
Score = 40.5 bits (82), Expect(2) = 6e-022
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = +3 / +3
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDD 98
VTGA GFI S LV+ LL RGY V V D D
Sbjct: 120 VTGAGGFIASWLVKLLLSRGYTVHGTVRDLSD 215
>gb|CB926819.1|CB926819 ABA1_10_G05.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_10_G05_A012 5', mRNA sequence
Length = 549
Score = 68.9 bits (144), Expect(2) = 6e-022
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXK 329
RL F+ G GVFH+ASP + +DP+N+L+ PA++GTL+V+RA K
Sbjct: 301 RLRLFQMDLLEPASIRPAVEGARGVFHVASPVILHRAQDPENELVEPALKGTLSVLRAAK 480
Query: 330 DAGGVRRVVVTSSISAV 380
D G R V+V+S + V
Sbjct: 481 DCGVGRVVMVSSQTAMV 531
Score = 55.6 bits (115), Expect(2) = 6e-022
Identities = 27/51 (52%), Positives = 29/51 (56%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDHXXXXXXXXXXXRL 155
VTG SGFIGS LVR LLGRGY V A V + D +ET H RL
Sbjct: 160 VTGGSGFIGSWLVRLLLGRGYTVHATVKNLQDESETKHLQAMDGANSRLRL 312
>gb|CW454707.1|CW454707 fsbb001f199e17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f199e17, DNA
sequence
Length = 586
Score = 62.9 bits (131), Expect(3) = 2e-021
Identities = 27/30 (90%), Positives = 28/30 (93%)
Frame = +3 / -3
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDP 92
VTGASGFIGSTLVR LLGRGYNV AGVL+P
Sbjct: 467 VTGASGFIGSTLVRLLLGRGYNVHAGVLNP 378
Score = 55.1 bits (114), Expect(3) = 2e-021
Identities = 23/41 (56%), Positives = 23/41 (56%)
Frame = +3 / -3
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQ 272
RL FR RGCSGVFHLASPC VD V DPQ
Sbjct: 233 RLRIFRGDLLDGAALIDAARGCSGVFHLASPCIVDAVSDPQ 111
Score = 22.6 bits (43), Expect(3) = 2e-021
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3 / -3
Query: 87 DPDDRAETDH 116
D DD+AET+H
Sbjct: 302 DADDKAETEH 273
>gb|BE360688.1|BE360688 DG1_66_C04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 103 bits (219), Expect = 2e-021
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +3 / +1
Query: 246 TVDPVKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDER 425
T PV D Q++ PAV GT V+ A +AG VRRVV TSSI AV +P VVDE
Sbjct: 172 TASPVTDDPEQMVEPAVRGTEYVINAAAEAGTVRRVVFTSSIGAVTMDPSRGPDVVVDES 351
Query: 426 CWTDIDYCEKNGVWYPASKTLAEKAAW 506
CW+D+++C+K WY K +AE+AAW
Sbjct: 352 CWSDLEFCKKTRNWYCYGKAVAEQAAW 432
>gb|CF758652.1|CF758652 DSAF1_35_A01.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_35_A01_A011 3', mRNA sequence
Length = 463
Score = 67.5 bits (141), Expect(2) = 8e-021
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3 / +2
Query: 342 VRRVVVTSSISAVVPNPGWPAGEVVDERCWTDIDYCEKNGV 464
V+RVVV SS++A+ NP WP G+ DE CW+D DYC KN V
Sbjct: 215 VKRVVVVSSVAAIFSNPYWPKGKAFDEDCWSDEDYCRKNEV 337
Score = 52.8 bits (109), Expect(2) = 8e-021
Identities = 26/72 (36%), Positives = 37/72 (51%)
Frame = +3 / +2
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASPCTVDPVKDPQNQLMVPAVEGTLNVVRAXK 329
RL + GC GVFH+ASP +P+ +++ PAV GT NV++A
Sbjct: 26 RLQLLKVDLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVLGTTNVLKACY 205
Query: 330 DAGGVRRVVVTS 365
+A R VVV+S
Sbjct: 206 EAKVKRVVVVSS 241
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 314,113,387
Number of Sequences: 832831
Number of extensions: 3186479
Number of successful extensions: 92165
Number of sequences better than 1.0e-020: 30
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 13759348995
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)