TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.2
(867 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD233298.1|CD233298 SS1_13_D09.b1_A012 Salt-stressed see... 133 2e-049
gb|BE360339.1|BE360339 DG1_62_B04.g1_A002 Dark Grown 1 (DG1... 133 2e-049
gb|CW086425.1|CW086425 104_430_10946966_116_33020_059 Sorgh... 92 1e-047
gb|BG101805.1|BG101805 RHIZ2_22_F06.g1_A003 Rhizome2 (RHIZ2... 75 6e-043
gb|CW367137.1|CW367137 fsbb001f040h12f0 Sorghum methylation... 92 1e-042
gb|CW355112.1|CW355112 fsbb001f019j21f0 Sorghum methylation... 56 3e-030
gb|BG050402.1|BG050402 FM1_53_F09.g1_A003 Floral-Induced Me... 75 4e-026
gb|CW487279.1|CW487279 fsbb001f253a19k0 Sorghum methylation... 75 1e-025
gb|CW086424.1|CW086424 104_430_10946966_114_33017_059 Sorgh... 75 2e-025
gb|BG102021.1|BG102021 RHIZ2_23_H06.g1_A003 Rhizome2 (RHIZ2... 75 7e-025
gb|CW346004.1|CW346004 104_849_11488796_148_36219_076 Sorgh... 64 5e-024
gb|CL183506.1|CL183506 104_396_10898219_114_31923_059 Sorgh... 64 5e-024
gb|CW346003.1|CW346003 104_849_11488796_116_36220_076 Sorgh... 64 5e-024
gb|CW432035.1|CW432035 fsbb001f146i17k0 Sorghum methylation... 93 9e-022
>gb|CD233298.1|CD233298 SS1_13_D09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_13_D09_A012 3', mRNA sequence
Length = 654
Score = 133 bits (286), Expect(5) = 2e-049
Identities = 56/64 (87%), Positives = 58/64 (90%)
Frame = +1 / -3
Query: 331 FNLLRKPTLTILPIPANPVCNLQYFQSKVHSHL*DSFQELLKMLQTPSDFQEHSESLDQP 510
FNLLRKPTLTI PIPANP C+LQYF SKVHSHL DSF+ LLK LQTPSDFQEHSESLDQP
Sbjct: 193 FNLLRKPTLTISPIPANPACSLQYFLSKVHSHLQDSFRGLLKRLQTPSDFQEHSESLDQP 14
Query: 511 LMLQ 522
LMLQ
Sbjct: 13 LMLQ 2
Score = 130 bits (279), Expect(5) = 5e-048
Identities = 55/64 (85%), Positives = 59/64 (92%)
Frame = -2 / +3
Query: 521 *SING*SKDSECSWKSEGVCNIFKSSWKLSYRCE*TLD*KYCRLHTGLAGIGKMVRVGFL 342
*SING*SKDSECSWKSEGVCN+FKS KLS RCE*TLD KYCRLH GLAG+G+MVRVGFL
Sbjct: 3 *SING*SKDSECSWKSEGVCNLFKSPRKLSCRCE*TLDRKYCRLHAGLAGMGEMVRVGFL 182
Query: 341 SKLK 330
S+LK
Sbjct: 183 SRLK 194
Score = 128 bits (275), Expect(5) = 1e-044
Identities = 58/64 (90%), Positives = 59/64 (92%)
Frame = -3 / +1
Query: 523 LEASMADPKTQNALGNLKEFATFLRVLGSYPTDVNEP*IESTADYILD*QE*AKWLELVS 344
LEASMADPKTQNALGNLKEFATFLRVLGSYP DVNEP*IESTADY+LD*QE KWLELV
Sbjct: 1 LEASMADPKTQNALGNLKEFATFLRVLGSYPVDVNEP*IESTADYMLD*QEWVKWLELVF 180
Query: 343 *AS* 332
*A *
Sbjct: 181 *AG* 192
Score = 110 bits (234), Expect(4) = 8e-032
Identities = 53/64 (82%), Positives = 54/64 (84%)
Frame = -1 / +2
Query: 522 LKHQWLIQRLRMLLEI*RSLQHF*EFLEAILQM*MNLRLKVLQITYWISRNRQNG*SWFP 343
LKHQWLIQRLRMLLEI*RSLQ F*E EAIL M*MNLR KVLQ T WISRN NG*SWF
Sbjct: 2 LKHQWLIQRLRMLLEI*RSLQPF*ESSEAIL*M*MNLR*KVLQTTCWISRNG*NG*SWFS 181
Query: 342 EQVK 331
EQV+
Sbjct: 182 EQVE 193
Score = 101 bits (215), Expect(4) = 9e-037
Identities = 47/60 (78%), Positives = 49/60 (81%)
Frame = +3 / -2
Query: 339 AQETNSNHFAYXXXXXXXXAVLSI*GSFTSVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
AQ+TNSNHF + AVLSI*GSFTS G*LPRTLK VANSFRFPRAF*VFGSAIDA
Sbjct: 185 AQKTNSNHFTHSC*SSM*SAVLSI*GSFTSTG*LPRTLKKVANSFRFPRAF*VFGSAIDA 6
Score = 83.1 bits (175), Expect(4) = 3e-027
Identities = 38/62 (61%), Positives = 42/62 (67%)
Frame = +2 / -1
Query: 335 TCSGNQL*PFCLFLLIQYVICSTFNLRFIHICRIASKNS*KCCKXXXXXXXXXXXXXXH* 514
TCS NQL*PF FLLIQ+V+CSTF LRFIHI RIAS++S*K CK H*
Sbjct: 189 TCSENQL*PFHPFLLIQHVVCSTFYLRFIHIYRIASEDS*KGCKLLQISKSILSLWISH* 10
Query: 515 CF 520
CF
Sbjct: 9 CF 4
Score = 52.8 bits (109), Expect(5) = 5e-048
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -1 / +2
Query: 111 RFICFMLENLCHGSMQVAKAQLQ*NNGTMSKNTALFW 1
+F F ++CHGSMQV K QL NNGT+SK+T LF+
Sbjct: 482 KFYMFSCWSVCHGSMQVVKMQLHWNNGTVSKSTCLFF 592
Score = 51.5 bits (106), Expect(5) = 2e-049
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +3 / -2
Query: 3 KKGRCS*TLSHYFTVTVL*QPACYHDTDS 89
K+ +CS*TLSHY VT *QPACYHD S
Sbjct: 590 KRDKCS*TLSHYSNVTAF*QPACYHDRHS 504
Score = 50.6 bits (104), Expect(4) = 9e-037
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = +2 / -1
Query: 2 QKRAVFLDIVPLFHCNCALATCMLP*HRFSNMKHINLV 115
+KR V LD VPLF CNC L TCMLP* + NL+
Sbjct: 591 KKRQVLLDTVPLFQCNCILTTCMLP*QTLQHENI*NLL 478
Score = 47.8 bits (98), Expect(5) = 1e-044
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -3 / +1
Query: 88 ESVSW*HAGC*STVTVK*WDNV*EH 14
E +SW*HAGC*+ VT++*WD+V*EH
Sbjct: 505 ECLSW*HAGC*NAVTLE*WDSV*EH 579
Score = 45.1 bits (92), Expect(4) = 3e-027
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1 / -3
Query: 4 KKGGVLRHCPIISL*LCFSNLHATMT 81
K+ LRHCPII +*L F+NLHATMT
Sbjct: 589 KETSALRHCPIIPM*LHFNNLHATMT 512
Score = 43.2 bits (88), Expect(4) = 8e-032
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -2 / +3
Query: 86 ICVMVACRLLKHSYSEIMGQCLR 18
+ VMVACRLLK SY IMGQCLR
Sbjct: 507 VSVMVACRLLKCSYIGIMGQCLR 575
Score = 32.7 bits (65), Expect(4) = 9e-037
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3 / -2
Query: 231 KCEPRMHRSLLV*SRSFYSVK 293
+C+P++H SLL+* RSF SVK
Sbjct: 287 QCKPQIHPSLLL*CRSFCSVK 225
Score = 32.2 bits (64), Expect(5) = 2e-049
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3 / -3
Query: 117 IEVFPNIQPFGIH 155
IEVFPNIQP G+H
Sbjct: 457 IEVFPNIQPLGLH 419
Score = 30.9 bits (61), Expect(5) = 2e-049
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +1 / -3
Query: 172 LKSSEKSPAKHQTFLSISQPNVSLECTGPYWSRVDPFTL*KTKS 303
L+ SE+ + F S NVSL+ T Y VDPF L*K S
Sbjct: 346 LQKSEEHHQLNIKFSSKITTNVSLKSTLLYCYNVDPFAL*KLAS 215
Score = 30.4 bits (60), Expect(4) = 3e-027
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2 / -1
Query: 233 M*ASNAPVPTGLE*ILLLCK 292
M*ASN P T + *ILLLCK
Sbjct: 285 M*ASNPPFSTAIM*ILLLCK 226
Score = 30.4 bits (60), Expect(5) = 1e-044
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -1 / +2
Query: 294 LLQSKRIYSRPVGTGAFEAHI 232
LLQSKRIY V G FEA+I
Sbjct: 224 LLQSKRIYIIAVEKGGFEAYI 286
Score = 29.9 bits (59), Expect(4) = 9e-037
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1 / -1
Query: 118 LKYFRIFNPLVSI 156
LKYF+IFNPLVS+
Sbjct: 456 LKYFQIFNPLVSM 418
Score = 29.5 bits (58), Expect(5) = 5e-048
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -2 / +2
Query: 155 MDTKGLNIRKYFN 117
M+TKGLNI KYFN
Sbjct: 419 METKGLNIWKYFN 457
Score = 28.6 bits (56), Expect(5) = 1e-044
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3 / +3
Query: 154 WIPKG*IFGNTSM 116
W P+G*IFGNTS+
Sbjct: 420 WRPRG*IFGNTSI 458
Score = 28.6 bits (56), Expect(5) = 5e-048
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2 / +3
Query: 293 FYRVKGSTLDQ*GPVHSRLTFGCDIERKV 207
FYR KGSTL Q* V RLT +E +
Sbjct: 225 FYRAKGSTL*Q*RRVDLRLTLVVILEENL 311
Score = 25.4 bits (49), Expect(5) = 5e-048
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = -1 / +1
Query: 333 KMRNSIKVMLTFS 295
K++NSIK+MLTF+
Sbjct: 193 KVKNSIKLMLTFT 231
Score = 23.5 bits (45), Expect(5) = 2e-049
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 298 KS*HHLNRVPHFN 336
KS*H NRV HF+
Sbjct: 228 KS*HQFNRVLHFS 190
Score = 23.5 bits (45), Expect(4) = 3e-027
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / -2
Query: 116 H*SISEYSTLWYP 154
+*SIS+YST W P
Sbjct: 458 Y*SISKYSTPWSP 420
Score = 22.6 bits (43), Expect(4) = 8e-032
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1 / +1
Query: 168 SPISYGYQRVEYSEILQ 118
S +G Q VEY EILQ
Sbjct: 406 STFKHGDQGVEYLEILQ 456
Score = 22.6 bits (43), Expect(5) = 1e-044
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3 / +3
Query: 331 NEELY*GDANF 299
+EELY* DANF
Sbjct: 195 SEELY*TDANF 227
Score = 21.7 bits (41), Expect(4) = 8e-032
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3 / +1
Query: 295 SFTE*KDLL*TSRDRCIRGSH 233
+FTE KDL +SR+ I G H
Sbjct: 223 TFTEQKDLHYSSREGWI*GLH 285
>gb|BE360339.1|BE360339 DG1_62_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 133 bits (286), Expect(5) = 2e-049
Identities = 56/64 (87%), Positives = 58/64 (90%)
Frame = +1 / -2
Query: 331 FNLLRKPTLTILPIPANPVCNLQYFQSKVHSHL*DSFQELLKMLQTPSDFQEHSESLDQP 510
FNLLRKPTLTI PIPANP C+LQYF SKVHSHL DSF+ LLK LQTPSDFQEHSESLDQP
Sbjct: 194 FNLLRKPTLTISPIPANPACSLQYFLSKVHSHLQDSFRGLLKRLQTPSDFQEHSESLDQP 15
Query: 511 LMLQ 522
LMLQ
Sbjct: 14 LMLQ 3
Score = 133 bits (286), Expect(5) = 3e-047
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = -2 / +1
Query: 524 P*SING*SKDSECSWKSEGVCNIFKSSWKLSYRCE*TLD*KYCRLHTGLAGIGKMVRVGF 345
P*SING*SKDSECSWKSEGVCN+FKS KLS RCE*TLD KYCRLH GLAG+G+MVRVGF
Sbjct: 1 P*SING*SKDSECSWKSEGVCNLFKSPRKLSCRCE*TLDRKYCRLHAGLAGMGEMVRVGF 180
Query: 344 LSKLK 330
LS+LK
Sbjct: 181 LSRLK 195
Score = 128 bits (275), Expect(5) = 9e-044
Identities = 58/64 (90%), Positives = 59/64 (92%)
Frame = -3 / +2
Query: 523 LEASMADPKTQNALGNLKEFATFLRVLGSYPTDVNEP*IESTADYILD*QE*AKWLELVS 344
LEASMADPKTQNALGNLKEFATFLRVLGSYP DVNEP*IESTADY+LD*QE KWLELV
Sbjct: 2 LEASMADPKTQNALGNLKEFATFLRVLGSYPVDVNEP*IESTADYMLD*QEWVKWLELVF 181
Query: 343 *AS* 332
*A *
Sbjct: 182 *AG* 193
Score = 110 bits (234), Expect(4) = 3e-032
Identities = 53/64 (82%), Positives = 54/64 (84%)
Frame = -1 / +3
Query: 522 LKHQWLIQRLRMLLEI*RSLQHF*EFLEAILQM*MNLRLKVLQITYWISRNRQNG*SWFP 343
LKHQWLIQRLRMLLEI*RSLQ F*E EAIL M*MNLR KVLQ T WISRN NG*SWF
Sbjct: 3 LKHQWLIQRLRMLLEI*RSLQPF*ESSEAIL*M*MNLR*KVLQTTCWISRNG*NG*SWFS 182
Query: 342 EQVK 331
EQV+
Sbjct: 183 EQVE 194
Score = 101 bits (215), Expect(4) = 7e-035
Identities = 47/60 (78%), Positives = 49/60 (81%)
Frame = +3 / -1
Query: 339 AQETNSNHFAYXXXXXXXXAVLSI*GSFTSVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
AQ+TNSNHF + AVLSI*GSFTS G*LPRTLK VANSFRFPRAF*VFGSAIDA
Sbjct: 186 AQKTNSNHFTHSC*SSM*SAVLSI*GSFTSTG*LPRTLKKVANSFRFPRAF*VFGSAIDA 7
Score = 83.1 bits (175), Expect(4) = 5e-026
Identities = 38/62 (61%), Positives = 42/62 (67%)
Frame = +2 / -3
Query: 335 TCSGNQL*PFCLFLLIQYVICSTFNLRFIHICRIASKNS*KCCKXXXXXXXXXXXXXXH* 514
TCS NQL*PF FLLIQ+V+CSTF LRFIHI RIAS++S*K CK H*
Sbjct: 190 TCSENQL*PFHPFLLIQHVVCSTFYLRFIHIYRIASEDS*KGCKLLQISKSILSLWISH* 11
Query: 515 CF 520
CF
Sbjct: 10 CF 5
Score = 51.0 bits (105), Expect(5) = 2e-049
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +3 / -1
Query: 3 KKGRCS*TLSHYFTVTVL*QPACYHDTDS 89
KK +CS*TL+HY VT *QPACYHD S
Sbjct: 591 KKRKCS*TLAHYSNVTAF*QPACYHDRHS 505
Score = 46.9 bits (96), Expect(5) = 3e-047
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = -2 / +1
Query: 86 ICVMVACRLLKHSYSEIMGQCLRTPPFF 3
+ VMVACRLLK SY IMGQCLR FF
Sbjct: 508 VSVMVACRLLKCSYIGIMGQCLRALSFF 591
Score = 44.6 bits (91), Expect(5) = 9e-044
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -1 / +3
Query: 111 RFICFMLENLCHGSMQVAKAQLQ*NNGTMSKNTALFW 1
+F F ++CHGSMQV K QL NNG + K+T F+
Sbjct: 483 KFYMFSCWSVCHGSMQVVKMQLHWNNGPVFKSTFFFF 593
Score = 44.1 bits (90), Expect(4) = 3e-032
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = -3 / +2
Query: 88 ESVSW*HAGC*STVTVK*WDNV*EH 14
E +SW*HAGC*+ VT++*W +V*EH
Sbjct: 506 ECLSW*HAGC*NAVTLE*WASV*EH 580
Score = 43.7 bits (89), Expect(4) = 7e-035
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2 / -3
Query: 2 QKRAVFLDIVPLFHCNCALATCMLP*HRFSNMKHINLV 115
+K+ V L+ PLF CNC L TCMLP* + NL+
Sbjct: 592 KKKKVLLNTGPLFQCNCILTTCMLP*QTLQHENI*NLL 479
Score = 40.5 bits (82), Expect(4) = 5e-026
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +1 / -2
Query: 4 KKGGVLRHCPIISL*LCFSNLHATMT 81
KK L+H PII +*L F+NLHATMT
Sbjct: 590 KKESALKHWPIIPM*LHFNNLHATMT 513
Score = 32.7 bits (65), Expect(4) = 7e-035
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3 / -1
Query: 231 KCEPRMHRSLLV*SRSFYSVK 293
+C+P++H SLL+* RSF SVK
Sbjct: 288 QCKPQIHPSLLL*CRSFCSVK 226
Score = 32.2 bits (64), Expect(5) = 2e-049
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3 / -2
Query: 117 IEVFPNIQPFGIH 155
IEVFPNIQP G+H
Sbjct: 458 IEVFPNIQPLGLH 420
Score = 30.9 bits (61), Expect(5) = 2e-049
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +1 / -2
Query: 172 LKSSEKSPAKHQTFLSISQPNVSLECTGPYWSRVDPFTL*KTKS 303
L+ SE+ + F S NVSL+ T Y VDPF L*K S
Sbjct: 347 LQKSEEHHQLNIKFSSKITTNVSLKSTLLYCYNVDPFAL*KLAS 216
Score = 30.4 bits (60), Expect(4) = 5e-026
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2 / -3
Query: 233 M*ASNAPVPTGLE*ILLLCK 292
M*ASN P T + *ILLLCK
Sbjct: 286 M*ASNPPFSTAIM*ILLLCK 227
Score = 30.4 bits (60), Expect(5) = 9e-044
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -1 / +3
Query: 294 LLQSKRIYSRPVGTGAFEAHI 232
LLQSKRIY V G FEA+I
Sbjct: 225 LLQSKRIYIIAVEKGGFEAYI 287
Score = 29.9 bits (59), Expect(4) = 7e-035
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1 / -3
Query: 118 LKYFRIFNPLVSI 156
LKYF+IFNPLVS+
Sbjct: 457 LKYFQIFNPLVSM 419
Score = 29.5 bits (58), Expect(5) = 3e-047
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -2 / +3
Query: 155 MDTKGLNIRKYFN 117
M+TKGLNI KYFN
Sbjct: 420 METKGLNIWKYFN 458
Score = 28.6 bits (56), Expect(5) = 9e-044
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3 / +1
Query: 154 WIPKG*IFGNTSM 116
W P+G*IFGNTS+
Sbjct: 421 WRPRG*IFGNTSI 459
Score = 28.6 bits (56), Expect(5) = 3e-047
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2 / +1
Query: 293 FYRVKGSTLDQ*GPVHSRLTFGCDIERKV 207
FYR KGSTL Q* V RLT +E +
Sbjct: 226 FYRAKGSTL*Q*RRVDLRLTLVVILEENL 312
Score = 25.4 bits (49), Expect(5) = 3e-047
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = -1 / +2
Query: 333 KMRNSIKVMLTFS 295
K++NSIK+MLTF+
Sbjct: 194 KVKNSIKLMLTFT 232
Score = 23.5 bits (45), Expect(5) = 2e-049
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / -3
Query: 298 KS*HHLNRVPHFN 336
KS*H NRV HF+
Sbjct: 229 KS*HQFNRVLHFS 191
Score = 23.5 bits (45), Expect(4) = 5e-026
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / -1
Query: 116 H*SISEYSTLWYP 154
+*SIS+YST W P
Sbjct: 459 Y*SISKYSTPWSP 421
Score = 22.6 bits (43), Expect(4) = 3e-032
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1 / +2
Query: 168 SPISYGYQRVEYSEILQ 118
S +G Q VEY EILQ
Sbjct: 407 STFKHGDQGVEYLEILQ 457
Score = 22.6 bits (43), Expect(5) = 9e-044
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3 / +1
Query: 331 NEELY*GDANF 299
+EELY* DANF
Sbjct: 196 SEELY*TDANF 228
Score = 21.7 bits (41), Expect(4) = 3e-032
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3 / +2
Query: 295 SFTE*KDLL*TSRDRCIRGSH 233
+FTE KDL +SR+ I G H
Sbjct: 224 TFTEQKDLHYSSREGWI*GLH 286
>gb|CW086425.1|CW086425 104_430_10946966_116_33020_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946966, DNA
sequence
Length = 668
Score = 92.3 bits (195), Expect(3) = 1e-047
Identities = 38/47 (80%), Positives = 43/47 (91%)
Frame = -3 / +3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFS 689
AA+LYGL VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+
Sbjct: 234 AAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFA 374
Score = 75.3 bits (158), Expect(3) = 1e-047
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / +3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D +ASMAD + QNAL ++EF +FLRVLGSYP D+
Sbjct: 489 VDDANVGTAKHFEYMFYIDFQASMADVRAQNALAEIQEFTSFLRVLGSYPMDM 647
Score = 62.9 bits (131), Expect(3) = 1e-047
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = -3 / +3
Query: 682 EGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 563
+G LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 384 DGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 503
>gb|BG101805.1|BG101805 RHIZ2_22_F06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 583
Score = 74.8 bits (157), Expect(3) = 6e-043
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FYVD +AS+A+P+ QNAL ++E+ +FLRVLGSYP D+
Sbjct: 226 VDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDM 384
Score = 74.8 bits (157), Expect(3) = 6e-043
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = -3 / +1
Query: 799 AENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFS 689
A+ IQDD NVTRF+MLAREPI+PRTD+PFKTSIVF+
Sbjct: 1 ADGIQDDSGNVTRFVMLAREPIVPRTDRPFKTSIVFA 111
Score = 64.8 bits (135), Expect(3) = 6e-043
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = -3 / +1
Query: 685 EEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 563
+EG LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 118 KEGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 240
>gb|CW367137.1|CW367137 fsbb001f040h12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f040h12, DNA
sequence
Length = 517
Score = 92.3 bits (195), Expect(3) = 1e-042
Identities = 38/47 (80%), Positives = 43/47 (91%)
Frame = -3 / +2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFS 689
AA+LYGL VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+
Sbjct: 131 AAELYGLQVLADGIQDDAGNVTRFVMLAREPIIPRTDRPFKTSIVFA 271
Score = 62.9 bits (131), Expect(3) = 1e-042
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = -3 / +2
Query: 682 EGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 563
+G LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 281 DGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 400
Score = 57.9 bits (120), Expect(3) = 1e-042
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = -3 / +2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLR 449
V D K+F+Y+FY+D +ASMAD + QNAL ++EF +FLR
Sbjct: 386 VDDANVGTAKHFEYMFYIDFQASMADVRAQNALAEIQEFTSFLR 517
>gb|CW355112.1|CW355112 fsbb001f019j21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019j21, DNA
sequence
Length = 805
Score = 55.6 bits (115), Expect(4) = 3e-030
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -3 / +3
Query: 553 KNFDYLFYVDLEASMADPKTQNALGNLK 470
++FDYLFYVDLEASMADP Q+AL NLK
Sbjct: 552 RHFDYLFYVDLEASMADPNAQSALENLK 635
Score = 51.0 bits (105), Expect(4) = 3e-030
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -3 / +3
Query: 721 DKPFKTSIVFSLEEGPGQLFKALAVFALRD 632
D +TS+V SLEEGPGQLFK LAVFAL++
Sbjct: 129 DHYLQTSVVLSLEEGPGQLFKVLAVFALKN 218
Score = 50.1 bits (103), Expect(4) = 3e-030
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = -3 / +3
Query: 769 VTRFMMLAREPIIPRTDKPFK 707
VTR MMLAREPIIPRTDKPFK
Sbjct: 3 VTRLMMLAREPIIPRTDKPFK 65
Score = 47.3 bits (97), Expect(4) = 9e-021
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1 / -2
Query: 469 PSDFQEHSESLDQPLMLQGQHKKGNQSS 552
PS FQEH E LDQPL LQ H++G+QS+
Sbjct: 636 PSSFQEHFEHLDQPLTLQDLHRRGSQSA 553
Score = 45.1 bits (92), Expect(4) = 9e-021
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +3 / -1
Query: 708 LNGLSVRGMMGSRASIIKRVT 770
LNGLSVRG+MGSRASII+RVT
Sbjct: 64 LNGLSVRGIMGSRASIIRRVT 2
Score = 36.3 bits (73), Expect(4) = 3e-030
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -3 / +3
Query: 472 KEFATFLRVLGSYPTDVNE 416
+EFA FL+VLGSYPT V+E
Sbjct: 702 QEFAKFLKVLGSYPTGVSE 758
Score = 36.3 bits (73), Expect(4) = 9e-021
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3 / -1
Query: 642 ANTASALKSCPGPSSSEKTMLV 707
ANTAS L S PGPSS +KT LV
Sbjct: 208 ANTASTLNS*PGPSSRDKTTLV 143
Score = 31.8 bits (63), Expect(4) = 9e-021
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -1
Query: 402 LSI*GSFTSVG*LPRTLKNVANS 470
LS S T VG*LPRT +N ANS
Sbjct: 772 LSFTPSLTPVG*LPRTFRNFANS 704
>gb|BG050402.1|BG050402 FM1_53_F09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 418
Score = 74.8 bits (157), Expect(2) = 4e-026
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FYVD +AS+A+P+ QNAL ++E+ +FLRVLGSYP D+
Sbjct: 145 VDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDM 303
Score = 64.8 bits (135), Expect(2) = 4e-026
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = -3 / +1
Query: 685 EEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 563
+EG LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 37 KEGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 159
>gb|CW487279.1|CW487279 fsbb001f253a19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253a19, DNA
sequence
Length = 806
Score = 75.3 bits (158), Expect(2) = 1e-025
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / +2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D +ASMAD + QNAL ++EF +FLRVLGSYP D+
Sbjct: 137 VDDANVGTAKHFEYMFYIDFQASMADVRAQNALAEIQEFTSFLRVLGSYPMDM 295
Score = 62.9 bits (131), Expect(2) = 1e-025
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = -3 / +2
Query: 682 EGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 563
+G LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 32 DGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 151
>gb|CW086424.1|CW086424 104_430_10946966_114_33017_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946966, DNA
sequence
Length = 651
Score = 75.3 bits (158), Expect(2) = 2e-025
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D +ASMAD + QNAL ++EF +FLRVLGSYP D+
Sbjct: 547 VDDANVGTAKHFEYMFYIDFQASMADVRAQNALAEIQEFTSFLRVLGSYPMDM 389
Score = 62.0 bits (129), Expect(2) = 2e-025
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -3 / -3
Query: 679 GPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 563
G LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 649 GTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 533
>gb|BG102021.1|BG102021 RHIZ2_23_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 585
Score = 74.8 bits (157), Expect(2) = 7e-025
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FYVD +AS+A+P+ QNAL ++E+ +FLRVLGSYP D+
Sbjct: 94 VDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDM 252
Score = 60.6 bits (126), Expect(2) = 7e-025
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = -3 / +1
Query: 667 LFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 563
LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 4 LFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 108
>gb|CW346004.1|CW346004 104_849_11488796_148_36219_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488796, DNA
sequence
Length = 757
Score = 64.3 bits (134), Expect(3) = 5e-024
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -3 / -3
Query: 793 NIQDDKDNVTRFMMLAREPIIPRTDKPFK 707
++QDD DNVTR MMLAREPIIPRTDKPFK
Sbjct: 380 HLQDDTDNVTRLMMLAREPIIPRTDKPFK 294
Score = 51.0 bits (105), Expect(3) = 5e-024
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -3 / -3
Query: 721 DKPFKTSIVFSLEEGPGQLFKALAVFALRD 632
D +TS+V SLEEGPGQLFK LAVFAL++
Sbjct: 230 DHYLQTSVVLSLEEGPGQLFKVLAVFALKN 141
Score = 35.0 bits (70), Expect(3) = 5e-024
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = -3 / -2
Query: 835 SLAAKLYGLDVLAENIQ 785
SLAA+LYGLD+LAE+IQ
Sbjct: 495 SLAAQLYGLDILAESIQ 445
>gb|CL183506.1|CL183506 104_396_10898219_114_31923_059 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898219, DNA
sequence
Length = 673
Score = 64.3 bits (134), Expect(3) = 5e-024
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -3 / +3
Query: 793 NIQDDKDNVTRFMMLAREPIIPRTDKPFK 707
++QDD DNVTR MMLAREPIIPRTDKPFK
Sbjct: 180 HLQDDTDNVTRLMMLAREPIIPRTDKPFK 266
Score = 51.0 bits (105), Expect(3) = 5e-024
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -3 / +3
Query: 721 DKPFKTSIVFSLEEGPGQLFKALAVFALRD 632
D +TS+V SLEEGPGQLFK LAVFAL++
Sbjct: 330 DHYLQTSVVLSLEEGPGQLFKVLAVFALKN 419
Score = 35.0 bits (70), Expect(3) = 5e-024
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = -3 / +2
Query: 835 SLAAKLYGLDVLAENIQ 785
SLAA+LYGLD+LAE+IQ
Sbjct: 65 SLAAQLYGLDILAESIQ 115
>gb|CW346003.1|CW346003 104_849_11488796_116_36220_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488796, DNA
sequence
Length = 664
Score = 64.3 bits (134), Expect(3) = 5e-024
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -3 / +2
Query: 793 NIQDDKDNVTRFMMLAREPIIPRTDKPFK 707
++QDD DNVTR MMLAREPIIPRTDKPFK
Sbjct: 419 HLQDDTDNVTRLMMLAREPIIPRTDKPFK 505
Score = 51.0 bits (105), Expect(3) = 5e-024
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -3 / +2
Query: 721 DKPFKTSIVFSLEEGPGQLFKALAVFALRD 632
D +TS+V SLEEGPGQLFK LAVFAL++
Sbjct: 569 DHYLQTSVVLSLEEGPGQLFKVLAVFALKN 658
Score = 35.0 bits (70), Expect(3) = 5e-024
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = -3 / +1
Query: 835 SLAAKLYGLDVLAENIQ 785
SLAA+LYGLD+LAE+IQ
Sbjct: 304 SLAAQLYGLDILAESIQ 354
>gb|CW432035.1|CW432035 fsbb001f146i17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f146i17, DNA
sequence
Length = 611
Score = 92.7 bits (196), Expect(2) = 9e-022
Identities = 36/49 (73%), Positives = 45/49 (91%)
Frame = -3 / +3
Query: 835 SLAAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFS 689
S AA+LYG++VLA+ +QDD NVTRF+MLAREPI+PRTD+PFKTSIVF+
Sbjct: 393 SRAAELYGMEVLADGVQDDSGNVTRFVMLAREPIVPRTDRPFKTSIVFA 539
Score = 32.2 bits (64), Expect(2) = 9e-022
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3 / +3
Query: 685 EEGPGQLFKALAVFALRDINLT 620
+EG LFK L+ FA RDI+LT
Sbjct: 546 KEGTSVLFKVLSAFAFRDISLT 611
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 976,269,913
Number of Sequences: 832831
Number of extensions: 12701431
Number of successful extensions: 61334
Number of sequences better than 1.0e-020: 15
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 27802401588
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)