TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.1
(1442 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW432035.1|CW432035 fsbb001f146i17k0 Sorghum methylation... 179 5e-081
gb|CX606212.1|CX606212 ANR1_1_F05.g1_A002 Anaerobic roots S... 281 1e-077
gb|CD233390.1|CD233390 SS1_13_D09.g1_A012 Salt-stressed see... 233 2e-063
gb|CW086425.1|CW086425 104_430_10946966_116_33020_059 Sorgh... 128 3e-058
gb|CW391644.1|CW391644 fsbb001f077o06f0 Sorghum methylation... 125 6e-055
gb|CW367137.1|CW367137 fsbb001f040h12f0 Sorghum methylation... 128 5e-053
gb|BG101805.1|BG101805 RHIZ2_22_F06.g1_A003 Rhizome2 (RHIZ2... 75 1e-042
gb|CW346003.1|CW346003 104_849_11488796_116_36220_076 Sorgh... 64 2e-040
gb|CD233298.1|CD233298 SS1_13_D09.b1_A012 Salt-stressed see... 114 2e-037
gb|BE360339.1|BE360339 DG1_62_B04.g1_A002 Dark Grown 1 (DG1... 114 3e-036
gb|CW346004.1|CW346004 104_849_11488796_148_36219_076 Sorgh... 64 4e-034
gb|CL183506.1|CL183506 104_396_10898219_114_31923_059 Sorgh... 64 3e-030
gb|CW245013.1|CW245013 104_706_11220872_116_37596_030 Sorgh... 133 6e-030
gb|CW355112.1|CW355112 fsbb001f019j21f0 Sorghum methylation... 56 3e-029
gb|BG050402.1|BG050402 FM1_53_F09.g1_A003 Floral-Induced Me... 75 7e-026
gb|CW487279.1|CW487279 fsbb001f253a19k0 Sorghum methylation... 75 2e-025
gb|CW245012.1|CW245012 104_706_11220872_116_35079_030 Sorgh... 118 2e-025
gb|CW086424.1|CW086424 104_430_10946966_114_33017_059 Sorgh... 75 3e-025
gb|BG102021.1|BG102021 RHIZ2_23_H06.g1_A003 Rhizome2 (RHIZ2... 75 1e-024
gb|CB927745.1|CB927745 ABA1_27_D11.g1_A012 Abscisic acid-tr... 113 8e-024
gb|CW393523.1|CW393523 fsbb001f080j23f0 Sorghum methylation... 112 1e-023
>gb|CW432035.1|CW432035 fsbb001f146i17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f146i17, DNA
sequence
Length = 611
Score = 179 bits (385), Expect(3) = 5e-081
Identities = 70/97 (72%), Positives = 82/97 (84%)
Frame = +3 / +3
Query: 249 PNCETVPCEHFDTAFQAVQNWVADRAVLPLENSLGGSIHRNYDLLLRHSLHIVGEVRLAV 428
P + +PC+ F+ AFQAV+ W+ADRAVLP+ENSLGGSIHRNYDLLLRH LHIVGEV+L V
Sbjct: 12 PGSDAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPV 191
Query: 429 RHCLLANPGVKIENLKSAMSHPQALAQCEHTLTSLGI 539
HCLLA PGV+ E L MSHPQALAQCEHTLT++G+
Sbjct: 192 HHCLLALPGVRKECLTRVMSHPQALAQCEHTLTAMGL 302
Score = 131 bits (281), Expect(3) = 5e-081
Identities = 55/76 (72%), Positives = 67/76 (88%)
Frame = +3 / +3
Query: 546 REAVDDTAGAAKIVAEHMLQDTGAIASSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREP 725
REA DDTAGAA+ VA + L+DT AIASS AA+LYG++VLA+ +QDD NVTRF+MLAREP
Sbjct: 312 REAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGVQDDSGNVTRFVMLAREP 491
Query: 726 IIPRTDKPFKTSIVFS 773
I+PRTD+PFKTSIVF+
Sbjct: 492 IVPRTDRPFKTSIVFA 539
Score = 105 bits (225), Expect(2) = 5e-041
Identities = 53/93 (56%), Positives = 59/93 (63%)
Frame = -2 / -2
Query: 535 PSDVNVCSHCARAWG*LIALFRFSIFTPGLANKQWRTARRTSPTMCKLCRSKRS*FLCML 356
P V+VCSHCA A G LI R S+ TPG A++QW T TSPTM RS RS* ML
Sbjct: 298 PMAVSVCSHCASACGWLITRVRHSLRTPGSASRQWCTGSCTSPTMWSR*RSSRS*LRWML 119
Query: 355 PPNEFSSGSTALSATQF*TA*NAVSKCSQGTVS 257
PP+EFS+GSTA SA TA NA S SQG S
Sbjct: 118 PPSEFSTGSTARSAIHSSTAWNATSNWSQGMAS 20
Score = 84.5 bits (178), Expect(2) = 5e-041
Identities = 48/77 (62%), Positives = 51/77 (66%)
Frame = -2 / -2
Query: 778 SSEKTMLVLNGLSVRGMMGSRASIIKRVTLSLSS*IFSARTSNPYSLAANELAIAPVSWS 599
S TMLVL G SVRG MGS ASI KRVT SS SA TS PYS AA + A+A VS S
Sbjct: 544 SCANTMLVLKGRSVRGTMGSLASITKRVTFPESSWTPSASTSIPYSSAARDDAMAAVSRS 365
Query: 598 ICSATIFAAPAVSSTAS 548
+AT AAPAVSS AS
Sbjct: 364 PLAATYSAAPAVSSNAS 314
Score = 32.2 bits (64), Expect(3) = 5e-081
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3 / +3
Query: 777 EEGPGQLFKALAVFALRDINLT 842
+EG LFK L+ FA RDI+LT
Sbjct: 546 KEGTSVLFKVLSAFAFRDISLT 611
>gb|CX606212.1|CX606212 ANR1_1_F05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_F05_A002 5', mRNA sequence
Length = 752
Score = 281 bits (608), Expect(2) = 1e-077
Identities = 114/133 (85%), Positives = 115/133 (86%)
Frame = +3 / +3
Query: 123 DPHWLPRPLTSADVMEVDGIVLKVAYQGCXXXXXXXXXXXXXPNCETVPCEHFDTAFQAV 302
DP+WLPRPLTSAD ME DG LKVAYQGC PNCETVPCEHFDTAF AV
Sbjct: 354 DPNWLPRPLTSADAMEADGKGLKVAYQGCAGAYSEAAAKKAYPNCETVPCEHFDTAFHAV 533
Query: 303 QNWVADRAVLPLENSLGGSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGVKIENLKSA 482
QNWVADRAVLPLENSLGGSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGVKIENLKSA
Sbjct: 534 QNWVADRAVLPLENSLGGSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGVKIENLKSA 713
Query: 483 MSHPQALAQCEHT 521
MSHPQALAQCEHT
Sbjct: 714 MSHPQALAQCEHT 752
Score = 258 bits (558), Expect(2) = 1e-070
Identities = 113/133 (84%), Positives = 113/133 (84%)
Frame = -2 / -2
Query: 520 VCSHCARAWG*LIALFRFSIFTPGLANKQWRTARRTSPTMCKLCRSKRS*FLCMLPPNEF 341
VCSHCARAWG*LIAL RFSIFTPGLANKQWRTARRTSPTMCKLCRSKRS*F CMLPPNEF
Sbjct: 751 VCSHCARAWG*LIALLRFSIFTPGLANKQWRTARRTSPTMCKLCRSKRS*FRCMLPPNEF 572
Query: 340 SSGSTALSATQF*TA*NAVSKCSQGTVSQFGXXXXXXXXXXXXAQPW*ATLRTIPSTSMT 161
SSGSTALSATQF*TA*NAVSKCSQGTVSQFG AQPW*ATL PS SM
Sbjct: 571 SSGSTALSATQF*TA*NAVSKCSQGTVSQFGYAFFAAASLYAPAQPW*ATLSPFPSASMA 392
Query: 160 SALVSGRGSQWGS 122
SALVSGRGSQ GS
Sbjct: 391 SALVSGRGSQLGS 353
Score = 240 bits (519), Expect = 3e-062
Identities = 106/131 (80%), Positives = 113/131 (86%)
Frame = -1 / -1
Query: 521 CVLTLRKSLGMTHSTFQVFNLHARIG**AMANRKANFSYNVQTMPKQKIIIPMYATSQ*I 342
CVLTL KSLGMTHSTF+VFNLHARIG* AMAN +ANFS NVQTMPKQKII+PMYATSQ*I
Sbjct: 752 CVLTLCKSLGMTHSTFKVFNLHARIG*QAMANCEANFSNNVQTMPKQKIIVPMYATSQ*I 573
Query: 341 LKWQYGPISYPVLNSLKCSVEVLTGHSLTIRVRLLCCCFAVRSSTTLVSNLENNTVHLHD 162
LKWQY PISYPVLNS+KCSV+VLTGHSLT+RVRLLCC FAV S TLVSNLE V LH
Sbjct: 572 LKWQYCPISYPVLNSVKCSVKVLTGHSLTVRVRLLCCRFAVCPSATLVSNLEPLPVRLHG 393
Query: 161 VRTCERTRQPV 129
VR E RQP+
Sbjct: 392 VRASEWPRQPI 360
Score = 236 bits (510), Expect(2) = 3e-064
Identities = 105/124 (84%), Positives = 108/124 (87%)
Frame = +2 / +2
Query: 149 HKCGRHGGGRYCSQGCLPGLCWSVQRSSSKEGVPEL*DCAL*ALRHCISGCSKLGS**GR 328
H GRHGGGR +QGCLPGL W +QRS SKEGVPEL*DCAL*AL HCIS CSKLGS**G
Sbjct: 380 H*RGRHGGGREGAQGCLPGLRWGIQRSGSKEGVPEL*DCAL*AL*HCISRCSKLGS**GS 559
Query: 329 TAT*EFIGR*HT*EL*SFASA*FAHCRRSSPCGSPLLISQSWRED*KPEKCYESSPGSCA 508
TAT*EFIGR*HT EL*SFASA*FAHC RSSP SPLL+SQSWRED*KP KCYESSPGSC
Sbjct: 560 TAT*EFIGR*HTSEL*SFASA*FAHCWRSSPRSSPLLVSQSWRED*KP*KCYESSPGSCT 739
Query: 509 M*AH 520
M*AH
Sbjct: 740 M*AH 751
Score = 229 bits (495), Expect = 7e-059
Identities = 95/111 (85%), Positives = 99/111 (89%)
Frame = -3 / -3
Query: 519 CAHIAQEPGDDS*HFSGFQSSRQDWLISNGEPQGELLLQCANYAEAKDHNSYVCYLPMNS 340
CAHI QEPGDDS*HF GFQSSRQDWL SNGE +GELL QCANYAEAKDH+S VCYLPMNS
Sbjct: 750 CAHIVQEPGDDS*HF*GFQSSRQDWLTSNGELRGELLQQCANYAEAKDHSSDVCYLPMNS 571
Query: 339 QVAVRPYQLPSFEQPEMQCRSAHRAQSHNSGTPSLLLLRCTLQHNPGKQP* 187
QVAV PYQLPSFEQ EMQC+SAHRAQSH+SGTPSLL LRC Q NPGKQP*
Sbjct: 570 QVAVLPYQLPSFEQREMQCQSAHRAQSHSSGTPSLLPLRCMPQRNPGKQP* 418
Score = 215 bits (464), Expect = 1e-054
Identities = 100/129 (77%), Positives = 101/129 (78%)
Frame = +1 / +1
Query: 133 GCLVRSQVRTSWRWTVLFSRLLTRVVLERTAKXXXXXXTRIVRLCPVSTSTLHFRLFKTG 312
GCL S RT WR T SRLLTRV L TAK TR VRLCPVST TLHF LFKTG
Sbjct: 364 GCLGHSLARTPWRRTGRGSRLLTRVALGHTAKRQQRRRTRTVRLCPVSTLTLHFTLFKTG 543
Query: 313 *LIGPYCHLRIHWEVAYIGIMIFCFGIVCTL*EKFALRFAIAY*PILA*RLKT*KVL*VI 492
*LIG YCHLRIHWEVAYIG MIFCFGIVCTL EKFA +FAIA *PILA*RLKT KVL*VI
Sbjct: 544 *LIGQYCHLRIHWEVAYIGTMIFCFGIVCTLLEKFASQFAIAC*PILA*RLKTLKVL*VI 723
Query: 493 PRLLRNVST 519
PRLL NVST
Sbjct: 724 PRLLHNVST 750
Score = 31.8 bits (63), Expect(2) = 3e-064
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1 / +1
Query: 55 ASSLWTLTGCVARQR 99
ASSLWT TGCV R R
Sbjct: 277 ASSLWTSTGCVGRPR 321
Score = 31.8 bits (63), Expect(2) = 1e-077
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3 / +3
Query: 24 TSPPRLTVSDGVESVDVNGL 83
++P +++S GVESVDVNGL
Sbjct: 246 SNPNYISISPGVESVDVNGL 305
Score = 31.3 bits (62), Expect(2) = 1e-070
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -1 / -1
Query: 98 RWRATQPVNVHRLDAVR 48
R R TQPV+VHRLDA R
Sbjct: 320 RGRPTQPVDVHRLDAGR 270
>gb|CD233390.1|CD233390 SS1_13_D09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_13_D09_A012 5', mRNA sequence
Length = 642
Score = 233 bits (503), Expect(2) = 2e-063
Identities = 94/112 (83%), Positives = 95/112 (84%)
Frame = +3 / +3
Query: 123 DPHWLPRPLTSADVMEVDGIVLKVAYQGCXXXXXXXXXXXXXPNCETVPCEHFDTAFQAV 302
DP+WLPRPLTSAD ME DG LKVAYQGC PNCETVPCEHFDTAFQAV
Sbjct: 306 DPNWLPRPLTSADAMEADGKGLKVAYQGCAGAYSEAAAKKAYPNCETVPCEHFDTAFQAV 485
Query: 303 QNWVADRAVLPLENSLGGSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGV 458
QNWVADRAVLPLENSLGGSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGV
Sbjct: 486 QNWVADRAVLPLENSLGGSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGV 641
Score = 210 bits (452), Expect(2) = 3e-056
Identities = 93/112 (83%), Positives = 93/112 (83%)
Frame = -2 / -3
Query: 457 TPGLANKQWRTARRTSPTMCKLCRSKRS*FLCMLPPNEFSSGSTALSATQF*TA*NAVSK 278
TPGLANKQWRTARRTSPTMCKLCRSKRS*F CMLPPNEFSSGSTALSATQF*TA*NAVSK
Sbjct: 640 TPGLANKQWRTARRTSPTMCKLCRSKRS*FRCMLPPNEFSSGSTALSATQF*TA*NAVSK 461
Query: 277 CSQGTVSQFGXXXXXXXXXXXXAQPW*ATLRTIPSTSMTSALVSGRGSQWGS 122
CSQGTVSQFG AQPW*ATL PS SM SALVSGRGSQ GS
Sbjct: 460 CSQGTVSQFGYAFFAAASLYAPAQPW*ATLSPFPSASMASALVSGRGSQLGS 305
Score = 198 bits (426), Expect = 2e-049
Identities = 88/110 (80%), Positives = 93/110 (84%)
Frame = -1 / -2
Query: 458 HARIG**AMANRKANFSYNVQTMPKQKIIIPMYATSQ*ILKWQYGPISYPVLNSLKCSVE 279
HARIG* AMAN +ANFS NVQTMPKQKII+PMYATSQ*ILKWQY PISYPVLNSLKCSV+
Sbjct: 641 HARIG*QAMANCEANFSNNVQTMPKQKIIVPMYATSQ*ILKWQYCPISYPVLNSLKCSVK 462
Query: 278 VLTGHSLTIRVRLLCCCFAVRSSTTLVSNLENNTVHLHDVRTCERTRQPV 129
VLTGHSLT+RVRLLCC FAV S TLVSNLE V LH VR E RQP+
Sbjct: 461 VLTGHSLTVRVRLLCCRFAVCPSATLVSNLEPLPVRLHGVRASEWPRQPI 312
Score = 195 bits (420), Expect(2) = 6e-052
Identities = 87/103 (84%), Positives = 90/103 (87%)
Frame = +2 / +2
Query: 149 HKCGRHGGGRYCSQGCLPGLCWSVQRSSSKEGVPEL*DCAL*ALRHCISGCSKLGS**GR 328
H GRHGGGR +QGCLPGL W +QRS SKEGVPEL*DCAL*AL HCISGCSKLGS**G
Sbjct: 332 H*RGRHGGGREGAQGCLPGLRWGIQRSGSKEGVPEL*DCAL*AL*HCISGCSKLGS**GS 511
Query: 329 TAT*EFIGR*HT*EL*SFASA*FAHCRRSSPCGSPLLISQSWR 457
TAT*EFIGR*HT EL*SFASA*FAHC RSSP SPLL+SQSWR
Sbjct: 512 TAT*EFIGR*HTSEL*SFASA*FAHCWRSSPRSSPLLVSQSWR 640
Score = 189 bits (408), Expect = 7e-047
Identities = 78/91 (85%), Positives = 82/91 (90%)
Frame = -3 / -1
Query: 459 SRQDWLISNGEPQGELLLQCANYAEAKDHNSYVCYLPMNSQVAVRPYQLPSFEQPEMQCR 280
SRQDWL SNGE +GELL QCANYAEAKDH+S VCYLPMNSQVAV PYQLPSFEQPEMQC+
Sbjct: 642 SRQDWLTSNGELRGELLQQCANYAEAKDHSSDVCYLPMNSQVAVLPYQLPSFEQPEMQCQ 463
Query: 279 SAHRAQSHNSGTPSLLLLRCTLQHNPGKQP* 187
SAHRAQSH+SGTPSLL LRC Q NPGKQP*
Sbjct: 462 SAHRAQSHSSGTPSLLPLRCMPQRNPGKQP* 370
Score = 183 bits (394), Expect = 6e-045
Identities = 83/109 (76%), Positives = 84/109 (77%)
Frame = +1 / +1
Query: 133 GCLVRSQVRTSWRWTVLFSRLLTRVVLERTAKXXXXXXTRIVRLCPVSTSTLHFRLFKTG 312
GCL S RT WR T SRLLTRV L TAK TR VRLCPVST TLHFRLFKTG
Sbjct: 316 GCLGHSLARTPWRRTGRGSRLLTRVALGHTAKRQQRRRTRTVRLCPVSTLTLHFRLFKTG 495
Query: 313 *LIGPYCHLRIHWEVAYIGIMIFCFGIVCTL*EKFALRFAIAY*PILA* 459
*LIG YCHLRIHWEVAYIG MIFCFGIVCTL EKFA +FAIA *PILA*
Sbjct: 496 *LIGQYCHLRIHWEVAYIGTMIFCFGIVCTLLEKFASQFAIAC*PILA* 642
Score = 31.8 bits (63), Expect(2) = 6e-052
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1 / +1
Query: 55 ASSLWTLTGCVARQR 99
ASSLWT TGCV R R
Sbjct: 229 ASSLWTSTGCVGRPR 273
Score = 31.8 bits (63), Expect(2) = 2e-063
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3 / +3
Query: 24 TSPPRLTVSDGVESVDVNGL 83
++P +++S GVESVDVNGL
Sbjct: 198 SNPNYISISPGVESVDVNGL 257
Score = 31.3 bits (62), Expect(2) = 3e-056
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -1 / -2
Query: 98 RWRATQPVNVHRLDAVR 48
R R TQPV+VHRLDA R
Sbjct: 272 RGRPTQPVDVHRLDAGR 222
>gb|CW086425.1|CW086425 104_430_10946966_116_33020_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946966, DNA
sequence
Length = 668
Score = 128 bits (274), Expect(3) = 3e-058
Identities = 57/76 (75%), Positives = 65/76 (85%)
Frame = +3 / +3
Query: 546 REAVDDTAGAAKIVAEHMLQDTGAIASSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREP 725
REA DDTAGAA+ VA L+DT AIAS+ AA+LYGL VLA+ IQDD NVTRF+MLAREP
Sbjct: 147 REAFDDTAGAAEHVAAGGLRDTAAIASARAAELYGLQVLADGIQDDAGNVTRFVMLAREP 326
Query: 726 IIPRTDKPFKTSIVFS 773
IIPRTD+PFKTSIVF+
Sbjct: 327 IIPRTDRPFKTSIVFA 374
Score = 86.3 bits (182), Expect(3) = 2e-027
Identities = 49/81 (60%), Positives = 55/81 (67%)
Frame = -2 / -2
Query: 778 SSEKTMLVLNGLSVRGMMGSRASIIKRVTLSLSS*IFSARTSNPYSLAANELAIAPVSWS 599
S KTMLVL GLSVRGMMGS AS+ RVTL SS + SART P S AA A+A VS S
Sbjct: 379 SCAKTMLVLKGLSVRGMMGSLASMTNRVTLPASSWMPSARTWRP*SSAARADAMAAVSLS 200
Query: 598 ICSATIFAAPAVSSTASLCSI 536
+AT AAPAVSS AS ++
Sbjct: 199 PPAATCSAAPAVSSKASRATL 137
Score = 75.3 bits (158), Expect(3) = 3e-058
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +3 / +3
Query: 882 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 1040
V D K+F+Y+FY+D +ASMAD + QNAL ++EF +FLRVLGSYP D+
Sbjct: 489 VDDANVGTAKHFEYMFYIDFQASMADVRAQNALAEIQEFTSFLRVLGSYPMDM 647
Score = 62.9 bits (131), Expect(3) = 3e-058
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +3 / +3
Query: 780 EGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 899
+G LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 384 DGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 503
Score = 43.7 bits (89), Expect(3) = 2e-027
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -2 / -2
Query: 535 PSDVNVCSHCARAWG*LIALFRFSIFTPGLANKQWRTARRTSPT 404
P ++V SHCA A G + S+ TPG A +QW T TSPT
Sbjct: 133 PMALSVSSHCASACGWEMTRVSSSLRTPGSARRQWWTGSWTSPT 2
Score = 32.7 bits (65), Expect(3) = 2e-027
Identities = 18/36 (50%), Positives = 18/36 (50%)
Frame = -2 / -2
Query: 880 RRGLSLCGRLSIFVRLMSLSANTASALKSCPGPSSS 773
R G CGRLSI V MS A S LK PS S
Sbjct: 484 RMGRWRCGRLSILVSEMSRKAKAESTLKRTEVPSVS 377
>gb|CW391644.1|CW391644 fsbb001f077o06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077o06, DNA
sequence
Length = 406
Score = 125 bits (267), Expect(2) = 6e-055
Identities = 52/72 (72%), Positives = 63/72 (87%)
Frame = +3 / +3
Query: 546 REAVDDTAGAAKIVAEHMLQDTGAIASSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREP 725
REA DDTAGAA+ VA + L+DT AIASS AA+LYG++VLA+ +QDD NVTRF+MLAREP
Sbjct: 189 REAFDDTAGAAEYVAANGLRDTAAIASSRAAELYGMEVLADGVQDDSGNVTRFLMLAREP 368
Query: 726 IIPRTDKPFKTS 761
I+PRTD+PFKTS
Sbjct: 369 IVPRTDRPFKTS 404
Score = 111 bits (238), Expect(2) = 6e-055
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +3 / +3
Query: 363 HRNYDLLLRHSLHIVGEVRLAVRHCLLANPGVKIENLKSAMSHPQALAQCEHTLTSLGI 539
HRNYDLLLRH LHIVGEV+L V HCLLA PGV+ E L MSHPQALAQCEHTLT++G+
Sbjct: 3 HRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKECLTRVMSHPQALAQCEHTLTAMGL 179
Score = 80.3 bits (169), Expect(2) = 1e-027
Identities = 46/72 (63%), Positives = 49/72 (68%)
Frame = -2 / -1
Query: 763 MLVLNGLSVRGMMGSRASIIKRVTLSLSS*IFSARTSNPYSLAANELAIAPVSWSICSAT 584
MLVL G SVRG MGS ASI KRVT SS SA TS PYS AA + A+A VS S +AT
Sbjct: 406 MLVLKGRSVRGTMGSLASIRKRVTFPESSWTPSASTSIPYSSAARDDAMAAVSRSPLAAT 227
Query: 583 IFAAPAVSSTAS 548
AAPAVSS AS
Sbjct: 226 YSAAPAVSSNAS 191
Score = 65.2 bits (136), Expect(2) = 1e-027
Identities = 31/55 (56%), Positives = 35/55 (63%)
Frame = -2 / -1
Query: 535 PSDVNVCSHCARAWG*LIALFRFSIFTPGLANKQWRTARRTSPTMCKLCRSKRS* 371
P V+VCSHCA A G LI R S+ TPG A++QW T TSPTM RS RS*
Sbjct: 175 PMAVSVCSHCASACGWLITRVRHSLRTPGSASRQWCTGSCTSPTMWSR*RSSRS* 11
>gb|CW367137.1|CW367137 fsbb001f040h12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f040h12, DNA
sequence
Length = 517
Score = 128 bits (274), Expect(3) = 5e-053
Identities = 57/76 (75%), Positives = 65/76 (85%)
Frame = +3 / +2
Query: 546 REAVDDTAGAAKIVAEHMLQDTGAIASSLAAKLYGLDVLAENIQDDKDNVTRFMMLAREP 725
REA DDTAGAA+ VA L+DT AIAS+ AA+LYGL VLA+ IQDD NVTRF+MLAREP
Sbjct: 44 REAFDDTAGAAEHVAAGGLRDTAAIASARAAELYGLQVLADGIQDDAGNVTRFVMLAREP 223
Query: 726 IIPRTDKPFKTSIVFS 773
IIPRTD+PFKTSIVF+
Sbjct: 224 IIPRTDRPFKTSIVFA 271
Score = 62.9 bits (131), Expect(3) = 5e-053
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +3 / +2
Query: 780 EGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 899
+G LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 281 DGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 400
Score = 57.9 bits (120), Expect(3) = 5e-053
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +3 / +2
Query: 882 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLR 1013
V D K+F+Y+FY+D +ASMAD + QNAL ++EF +FLR
Sbjct: 386 VDDANVGTAKHFEYMFYIDFQASMADVRAQNALAEIQEFTSFLR 517
>gb|BG101805.1|BG101805 RHIZ2_22_F06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 583
Score = 74.8 bits (157), Expect(3) = 1e-042
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = +3 / +1
Query: 882 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 1040
V D K+F+Y+FYVD +AS+A+P+ QNAL ++E+ +FLRVLGSYP D+
Sbjct: 226 VDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDM 384
Score = 74.8 bits (157), Expect(3) = 1e-042
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = +3 / +1
Query: 663 AENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFS 773
A+ IQDD NVTRF+MLAREPI+PRTD+PFKTSIVF+
Sbjct: 1 ADGIQDDSGNVTRFVMLAREPIVPRTDRPFKTSIVFA 111
Score = 64.8 bits (135), Expect(3) = 1e-042
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +3 / +1
Query: 777 EEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 899
+EG LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 118 KEGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 240
>gb|CW346003.1|CW346003 104_849_11488796_116_36220_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488796, DNA
sequence
Length = 664
Score = 64.3 bits (134), Expect(4) = 2e-040
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +3 / +2
Query: 669 NIQDDKDNVTRFMMLAREPIIPRTDKPFK 755
++QDD DNVTR MMLAREPIIPRTDKPFK
Sbjct: 419 HLQDDTDNVTRLMMLAREPIIPRTDKPFK 505
Score = 59.7 bits (124), Expect(4) = 5e-030
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -2 / -3
Query: 580 FAAPAVSSTASLCSIPSDVNVCSHCARA 497
FAAPAVSSTASLCSI + VNVCSHCARA
Sbjct: 92 FAAPAVSSTASLCSISNLVNVCSHCARA 9
Score = 57.9 bits (120), Expect(4) = 2e-040
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +3 / +1
Query: 498 ALAQCEHTLTSLGIEHREAVDDTAGAAKI 584
ALAQCE TLT L IEHREAVDDTAGAA +
Sbjct: 10 ALAQCEQTLTKLEIEHREAVDDTAGAANV 96
Score = 57.0 bits (118), Expect(4) = 2e-040
Identities = 23/32 (71%), Positives = 29/32 (90%)
Frame = +3 / +1
Query: 582 IVAEHMLQDTGAIASSLAAKLYGLDVLAENIQ 677
++AE LQDT A+ASSLAA+LYGLD+LAE+IQ
Sbjct: 259 LIAEQKLQDTAAVASSLAAQLYGLDILAESIQ 354
Score = 52.8 bits (109), Expect(4) = 5e-030
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = -2 / -2
Query: 754 LNGLSVRGMMGSRASIIKRVTLSLSS 677
LNGLSVRG+MGSRASII+RVTLS+SS
Sbjct: 504 LNGLSVRGIMGSRASIIRRVTLSVSS 427
Score = 51.0 bits (105), Expect(4) = 2e-040
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +3 / +2
Query: 741 DKPFKTSIVFSLEEGPGQLFKALAVFALRD 830
D +TS+V SLEEGPGQLFK LAVFAL++
Sbjct: 569 DHYLQTSVVLSLEEGPGQLFKVLAVFALKN 658
Score = 46.0 bits (94), Expect(4) = 5e-030
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = -2 / -3
Query: 688 SLSS*IFSARTSNPYSLAANELAIAPVSWSICSA 587
S +*+ SAR S+P S AANELA A VSWS CSA
Sbjct: 365 SCCT*MLSARISSP*S*AANELATAAVSWSFCSA 264
Score = 36.3 bits (73), Expect(4) = 5e-030
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -2 / -2
Query: 820 ANTASALKSCPGPSSSEKTMLV 755
ANTAS L S PGPSS +KT LV
Sbjct: 648 ANTASTLNS*PGPSSRDKTTLV 583
>gb|CD233298.1|CD233298 SS1_13_D09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_13_D09_A012 3', mRNA sequence
Length = 654
Score = 114 bits (243), Expect(4) = 2e-037
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = +3 / +1
Query: 939 LEASMADPKTQNALGNLKEFATFLRVLGSYPTDVNEP*IESTADYILD*QE*AK 1100
LEASMADPKTQNALGNLKEFATFLRVLGSYP DVNEP*IESTADY+LD*QE K
Sbjct: 1 LEASMADPKTQNALGNLKEFATFLRVLGSYPVDVNEP*IESTADYMLD*QEWVK 162
Score = 110 bits (235), Expect(3) = 2e-033
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = +2 / +3
Query: 941 *SING*SKDSECSWKSEGVCNIFKSSWKLSYRCE*TLD*KYCRLHTGLAGIGKM 1102
*SING*SKDSECSWKSEGVCN+FKS KLS RCE*TLD KYCRLH GLAG+G+M
Sbjct: 3 *SING*SKDSECSWKSEGVCNLFKSPRKLSCRCE*TLDRKYCRLHAGLAGMGEM 164
Score = 101 bits (215), Expect(4) = 4e-037
Identities = 42/49 (85%), Positives = 44/49 (89%)
Frame = -3 / -3
Query: 1086 ANPVCNLQYFQSKVHSHL*DSFQELLKMLQTPSDFQEHSESLDQPLMLQ 940
ANP C+LQYF SKVHSHL DSF+ LLK LQTPSDFQEHSESLDQPLMLQ
Sbjct: 148 ANPACSLQYFLSKVHSHLQDSFRGLLKRLQTPSDFQEHSESLDQPLMLQ 2
Score = 90.9 bits (192), Expect(3) = 3e-024
Identities = 44/51 (86%), Positives = 44/51 (86%)
Frame = +1 / +2
Query: 940 LKHQWLIQRLRMLLEI*RSLQHF*EFLEAILQM*MNLRLKVLQITYWISRN 1092
LKHQWLIQRLRMLLEI*RSLQ F*E EAIL M*MNLR KVLQ T WISRN
Sbjct: 2 LKHQWLIQRLRMLLEI*RSLQPF*ESSEAIL*M*MNLR*KVLQTTCWISRN 154
Score = 87.2 bits (184), Expect(4) = 3e-032
Identities = 42/53 (79%), Positives = 43/53 (81%)
Frame = -2 / -2
Query: 1102 HFAYXXXXXXXSAVLSI*GSFTSVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 944
HF + SAVLSI*GSFTS G*LPRTLK VANSFRFPRAF*VFGSAIDA
Sbjct: 164 HFTHSC*SSM*SAVLSI*GSFTSTG*LPRTLKKVANSFRFPRAF*VFGSAIDA 6
Score = 53.3 bits (110), Expect(4) = 4e-037
Identities = 25/49 (51%), Positives = 28/49 (57%)
Frame = -3 / -1
Query: 1419 TSVIQFLLYCHKKRAVFLDIVPLFHCNCALATCMLP*HRFSNMKHINLV 1273
TSV+ KKR V LD VPLF CNC L TCMLP* + NL+
Sbjct: 624 TSVLIIQSSKKKKRQVLLDTVPLFQCNCILTTCMLP*QTLQHENI*NLL 478
Score = 52.4 bits (108), Expect(4) = 2e-037
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2 / +2
Query: 1277 RFICFMLENLCHGSMQVAKAQLQ*NNGTMSKNTALF 1384
+F F ++CHGSMQV K QL NNGT+SK+T LF
Sbjct: 482 KFYMFSCWSVCHGSMQVVKMQLHWNNGTVSKSTCLF 589
Score = 51.5 bits (106), Expect(4) = 3e-032
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = -1 / -2
Query: 1385 KKGRCS*TLSHYFTVTVL*QPACYHDTDS 1299
K+ +CS*TLSHY VT *QPACYHD S
Sbjct: 590 KRDKCS*TLSHYSNVTAF*QPACYHDRHS 504
Score = 49.2 bits (101), Expect(3) = 2e-033
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1 / +1
Query: 1300 ESVSW*HAGC*STVTVK*WDNV*EHRPFF 1386
E +SW*HAGC*+ VT++*WD+V*EH F
Sbjct: 505 ECLSW*HAGC*NAVTLE*WDSV*EHLSLF 591
Score = 43.2 bits (88), Expect(3) = 3e-024
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +3 / +3
Query: 1302 ICVMVACRLLKHSYSEIMGQCLR 1370
+ VMVACRLLK SY IMGQCLR
Sbjct: 507 VSVMVACRLLKCSYIGIMGQCLR 575
Score = 32.2 bits (64), Expect(4) = 3e-032
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -1 / -3
Query: 1271 IEVFPNIQPFGIH 1233
IEVFPNIQP G+H
Sbjct: 457 IEVFPNIQPLGLH 419
Score = 29.9 bits (59), Expect(4) = 4e-037
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -2 / -1
Query: 1270 LKYFRIFNPLVSI 1232
LKYF+IFNPLVS+
Sbjct: 456 LKYFQIFNPLVSM 418
Score = 29.5 bits (58), Expect(4) = 2e-037
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3 / +2
Query: 1233 MDTKGLNIRKYFN 1271
M+TKGLNI KYFN
Sbjct: 419 METKGLNIWKYFN 457
Score = 28.6 bits (56), Expect(3) = 2e-033
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 1234 WIPKG*IFGNTSM 1272
W P+G*IFGNTS+
Sbjct: 420 WRPRG*IFGNTSI 458
Score = 28.6 bits (56), Expect(4) = 4e-037
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1 / -2
Query: 1157 KCEPRMHRSLLV*SRSFYS 1101
+C+P++H SLL+* RSF S
Sbjct: 287 QCKPQIHPSLLL*CRSFCS 231
Score = 25.4 bits (49), Expect(4) = 3e-032
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2 / -3
Query: 1216 LKSSEKSPAKHQTFLSISQPNVSLECTGPYWSRVDPF 1106
L+ SE+ + F S NVSL+ T Y VDPF
Sbjct: 346 LQKSEEHHQLNIKFSSKITTNVSLKSTLLYCYNVDPF 236
Score = 24.4 bits (47), Expect(4) = 2e-037
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / +2
Query: 1103 SKRIYSRPVGTGAFEAHI 1156
SKRIY V G FEA+I
Sbjct: 233 SKRIYIIAVEKGGFEAYI 286
Score = 22.6 bits (43), Expect(3) = 3e-024
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / +1
Query: 1220 SPISYGYQRVEYSEILQ 1270
S +G Q VEY EILQ
Sbjct: 406 STFKHGDQGVEYLEILQ 456
>gb|BE360339.1|BE360339 DG1_62_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 114 bits (243), Expect(4) = 5e-036
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = +3 / +2
Query: 939 LEASMADPKTQNALGNLKEFATFLRVLGSYPTDVNEP*IESTADYILD*QE*AK 1100
LEASMADPKTQNALGNLKEFATFLRVLGSYP DVNEP*IESTADY+LD*QE K
Sbjct: 2 LEASMADPKTQNALGNLKEFATFLRVLGSYPVDVNEP*IESTADYMLD*QEWVK 163
Score = 113 bits (242), Expect(3) = 7e-034
Identities = 47/55 (85%), Positives = 50/55 (90%)
Frame = +2 / +1
Query: 938 P*SING*SKDSECSWKSEGVCNIFKSSWKLSYRCE*TLD*KYCRLHTGLAGIGKM 1102
P*SING*SKDSECSWKSEGVCN+FKS KLS RCE*TLD KYCRLH GLAG+G+M
Sbjct: 1 P*SING*SKDSECSWKSEGVCNLFKSPRKLSCRCE*TLDRKYCRLHAGLAGMGEM 165
Score = 101 bits (215), Expect(4) = 3e-036
Identities = 42/49 (85%), Positives = 44/49 (89%)
Frame = -3 / -2
Query: 1086 ANPVCNLQYFQSKVHSHL*DSFQELLKMLQTPSDFQEHSESLDQPLMLQ 940
ANP C+LQYF SKVHSHL DSF+ LLK LQTPSDFQEHSESLDQPLMLQ
Sbjct: 149 ANPACSLQYFLSKVHSHLQDSFRGLLKRLQTPSDFQEHSESLDQPLMLQ 3
Score = 90.9 bits (192), Expect(3) = 1e-024
Identities = 44/51 (86%), Positives = 44/51 (86%)
Frame = +1 / +3
Query: 940 LKHQWLIQRLRMLLEI*RSLQHF*EFLEAILQM*MNLRLKVLQITYWISRN 1092
LKHQWLIQRLRMLLEI*RSLQ F*E EAIL M*MNLR KVLQ T WISRN
Sbjct: 3 LKHQWLIQRLRMLLEI*RSLQPF*ESSEAIL*M*MNLR*KVLQTTCWISRN 155
Score = 87.2 bits (184), Expect(4) = 5e-029
Identities = 42/53 (79%), Positives = 43/53 (81%)
Frame = -2 / -1
Query: 1102 HFAYXXXXXXXSAVLSI*GSFTSVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 944
HF + SAVLSI*GSFTS G*LPRTLK VANSFRFPRAF*VFGSAIDA
Sbjct: 165 HFTHSC*SSM*SAVLSI*GSFTSTG*LPRTLKKVANSFRFPRAF*VFGSAIDA 7
Score = 51.0 bits (105), Expect(4) = 3e-036
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = -1 / -1
Query: 1385 KKGRCS*TLSHYFTVTVL*QPACYHDTDS 1299
KK +CS*TL+HY VT *QPACYHD S
Sbjct: 591 KKRKCS*TLAHYSNVTAF*QPACYHDRHS 505
Score = 46.9 bits (96), Expect(4) = 5e-036
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +3 / +1
Query: 1302 ICVMVACRLLKHSYSEIMGQCLRTPPFF 1385
+ VMVACRLLK SY IMGQCLR FF
Sbjct: 508 VSVMVACRLLKCSYIGIMGQCLRALSFF 591
Score = 46.9 bits (96), Expect(3) = 7e-034
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1 / +2
Query: 1300 ESVSW*HAGC*STVTVK*WDNV*EHRPFF 1386
E +SW*HAGC*+ VT++*W +V*EH FF
Sbjct: 506 ECLSW*HAGC*NAVTLE*WASV*EHFLFF 592
Score = 45.5 bits (93), Expect(4) = 5e-029
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -3 / -3
Query: 1386 KKRAVFLDIVPLFHCNCALATCMLP*HRFSNMKHINLV 1273
KK+ V L+ PLF CNC L TCMLP* + NL+
Sbjct: 592 KKKKVLLNTGPLFQCNCILTTCMLP*QTLQHENI*NLL 479
Score = 44.1 bits (90), Expect(3) = 1e-024
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +2 / +3
Query: 1277 RFICFMLENLCHGSMQVAKAQLQ*NNGTMSKNTALF 1384
+F F ++CHGSMQV K QL NNG + K+T F
Sbjct: 483 KFYMFSCWSVCHGSMQVVKMQLHWNNGPVFKSTFFF 590
Score = 32.2 bits (64), Expect(4) = 3e-036
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -1 / -2
Query: 1271 IEVFPNIQPFGIH 1233
IEVFPNIQP G+H
Sbjct: 458 IEVFPNIQPLGLH 420
Score = 29.9 bits (59), Expect(4) = 5e-029
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = -2 / -3
Query: 1270 LKYFRIFNPLVSI 1232
LKYF+IFNPLVS+
Sbjct: 457 LKYFQIFNPLVSM 419
Score = 29.5 bits (58), Expect(4) = 5e-036
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3 / +3
Query: 1233 MDTKGLNIRKYFN 1271
M+TKGLNI KYFN
Sbjct: 420 METKGLNIWKYFN 458
Score = 28.6 bits (56), Expect(3) = 7e-034
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 1234 WIPKG*IFGNTSM 1272
W P+G*IFGNTS+
Sbjct: 421 WRPRG*IFGNTSI 459
Score = 28.6 bits (56), Expect(4) = 5e-029
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1 / -1
Query: 1157 KCEPRMHRSLLV*SRSFYS 1101
+C+P++H SLL+* RSF S
Sbjct: 288 QCKPQIHPSLLL*CRSFCS 232
Score = 25.4 bits (49), Expect(4) = 3e-036
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2 / -2
Query: 1216 LKSSEKSPAKHQTFLSISQPNVSLECTGPYWSRVDPF 1106
L+ SE+ + F S NVSL+ T Y VDPF
Sbjct: 347 LQKSEEHHQLNIKFSSKITTNVSLKSTLLYCYNVDPF 237
Score = 24.4 bits (47), Expect(4) = 5e-036
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / +3
Query: 1103 SKRIYSRPVGTGAFEAHI 1156
SKRIY V G FEA+I
Sbjct: 234 SKRIYIIAVEKGGFEAYI 287
Score = 22.6 bits (43), Expect(3) = 1e-024
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / +2
Query: 1220 SPISYGYQRVEYSEILQ 1270
S +G Q VEY EILQ
Sbjct: 407 STFKHGDQGVEYLEILQ 457
>gb|CW346004.1|CW346004 104_849_11488796_148_36219_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488796, DNA
sequence
Length = 757
Score = 64.3 bits (134), Expect(4) = 4e-034
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +3 / -3
Query: 669 NIQDDKDNVTRFMMLAREPIIPRTDKPFK 755
++QDD DNVTR MMLAREPIIPRTDKPFK
Sbjct: 380 HLQDDTDNVTRLMMLAREPIIPRTDKPFK 294
Score = 57.0 bits (118), Expect(4) = 4e-034
Identities = 23/32 (71%), Positives = 29/32 (90%)
Frame = +3 / -2
Query: 582 IVAEHMLQDTGAIASSLAAKLYGLDVLAENIQ 677
++AE LQDT A+ASSLAA+LYGLD+LAE+IQ
Sbjct: 540 LIAEQKLQDTAAVASSLAAQLYGLDILAESIQ 445
Score = 52.8 bits (109), Expect(4) = 8e-023
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = -2 / +1
Query: 754 LNGLSVRGMMGSRASIIKRVTLSLSS 677
LNGLSVRG+MGSRASII+RVTLS+SS
Sbjct: 295 LNGLSVRGIMGSRASIIRRVTLSVSS 372
Score = 51.0 bits (105), Expect(4) = 4e-034
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +3 / -3
Query: 741 DKPFKTSIVFSLEEGPGQLFKALAVFALRD 830
D +TS+V SLEEGPGQLFK LAVFAL++
Sbjct: 230 DHYLQTSVVLSLEEGPGQLFKVLAVFALKN 141
Score = 46.0 bits (94), Expect(4) = 8e-023
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = -2 / +2
Query: 688 SLSS*IFSARTSNPYSLAANELAIAPVSWSICSA 587
S +*+ SAR S+P S AANELA A VSWS CSA
Sbjct: 434 SCCT*MLSARISSP*S*AANELATAAVSWSFCSA 535
Score = 37.3 bits (75), Expect(4) = 4e-034
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3 / -2
Query: 531 LGIEHREAVDDTAGAAKI 584
L IEHREAVDDTAGAA +
Sbjct: 756 LEIEHREAVDDTAGAANV 703
Score = 36.3 bits (73), Expect(4) = 8e-023
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 820 ANTASALKSCPGPSSSEKTMLV 755
ANTAS L S PGPSS +KT LV
Sbjct: 151 ANTASTLNS*PGPSSRDKTTLV 216
Score = 35.4 bits (71), Expect(4) = 8e-023
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2 / +2
Query: 580 FAAPAVSSTASLCSI 536
FAAPAVSSTASLCSI
Sbjct: 707 FAAPAVSSTASLCSI 751
>gb|CL183506.1|CL183506 104_396_10898219_114_31923_059 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898219, DNA
sequence
Length = 673
Score = 64.3 bits (134), Expect(3) = 3e-030
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +3 / +3
Query: 669 NIQDDKDNVTRFMMLAREPIIPRTDKPFK 755
++QDD DNVTR MMLAREPIIPRTDKPFK
Sbjct: 180 HLQDDTDNVTRLMMLAREPIIPRTDKPFK 266
Score = 57.0 bits (118), Expect(3) = 3e-030
Identities = 23/32 (71%), Positives = 29/32 (90%)
Frame = +3 / +2
Query: 582 IVAEHMLQDTGAIASSLAAKLYGLDVLAENIQ 677
++AE LQDT A+ASSLAA+LYGLD+LAE+IQ
Sbjct: 20 LIAEQKLQDTAAVASSLAAQLYGLDILAESIQ 115
Score = 51.0 bits (105), Expect(3) = 3e-030
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +3 / +3
Query: 741 DKPFKTSIVFSLEEGPGQLFKALAVFALRD 830
D +TS+V SLEEGPGQLFK LAVFAL++
Sbjct: 330 DHYLQTSVVLSLEEGPGQLFKVLAVFALKN 419
>gb|CW245013.1|CW245013 104_706_11220872_116_37596_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220872, DNA
sequence
Length = 630
Score = 133 bits (285), Expect = 6e-030
Identities = 57/120 (47%), Positives = 72/120 (60%)
Frame = +3 / +1
Query: 174 DGIVLKVAYQGCXXXXXXXXXXXXXPNCETVPCEHFDTAFQAVQNWVADRAVLPLENSLG 353
DG L+VA+QG P CETVPC F A AV+ ADRAVLP+E+++
Sbjct: 271 DGSGLRVAFQGAPGAYSEFAAKTALPGCETVPCRAFADALAAVERGAADRAVLPVESTME 450
Query: 354 GSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGVKIENLKSAMSHPQALAQCEHTLTSL 533
G+ RNYDLLLRH L +V E+ L V +CLLA PGV+ ++ +SHP ALA C L L
Sbjct: 451 GTALRNYDLLLRHGLVVVQEINLFVHYCLLAMPGVRAAEVRRVISHPMALAHCGRALARL 630
>gb|CW355112.1|CW355112 fsbb001f019j21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019j21, DNA
sequence
Length = 805
Score = 55.6 bits (115), Expect(4) = 3e-029
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +3 / +3
Query: 909 KNFDYLFYVDLEASMADPKTQNALGNLK 992
++FDYLFYVDLEASMADP Q+AL NLK
Sbjct: 552 RHFDYLFYVDLEASMADPNAQSALENLK 635
Score = 51.0 bits (105), Expect(4) = 3e-029
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +3 / +3
Query: 741 DKPFKTSIVFSLEEGPGQLFKALAVFALRD 830
D +TS+V SLEEGPGQLFK LAVFAL++
Sbjct: 129 DHYLQTSVVLSLEEGPGQLFKVLAVFALKN 218
Score = 50.1 bits (103), Expect(4) = 3e-029
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = +3 / +3
Query: 693 VTRFMMLAREPIIPRTDKPFK 755
VTR MMLAREPIIPRTDKPFK
Sbjct: 3 VTRLMMLAREPIIPRTDKPFK 65
Score = 36.3 bits (73), Expect(4) = 3e-029
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 990 KEFATFLRVLGSYPTDVNE 1046
+EFA FL+VLGSYPT V+E
Sbjct: 702 QEFAKFLKVLGSYPTGVSE 758
>gb|BG050402.1|BG050402 FM1_53_F09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 418
Score = 74.8 bits (157), Expect(2) = 7e-026
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = +3 / +1
Query: 882 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 1040
V D K+F+Y+FYVD +AS+A+P+ QNAL ++E+ +FLRVLGSYP D+
Sbjct: 145 VDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDM 303
Score = 64.8 bits (135), Expect(2) = 7e-026
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +3 / +1
Query: 777 EEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 899
+EG LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 37 KEGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 159
>gb|CW487279.1|CW487279 fsbb001f253a19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253a19, DNA
sequence
Length = 806
Score = 75.3 bits (158), Expect(2) = 2e-025
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +3 / +2
Query: 882 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 1040
V D K+F+Y+FY+D +ASMAD + QNAL ++EF +FLRVLGSYP D+
Sbjct: 137 VDDANVGTAKHFEYMFYIDFQASMADVRAQNALAEIQEFTSFLRVLGSYPMDM 295
Score = 62.9 bits (131), Expect(2) = 2e-025
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +3 / +2
Query: 780 EGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 899
+G LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 32 DGTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 151
>gb|CW245012.1|CW245012 104_706_11220872_116_35079_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220872, DNA
sequence
Length = 607
Score = 118 bits (252), Expect = 2e-025
Identities = 50/106 (47%), Positives = 65/106 (61%)
Frame = +3 / +1
Query: 174 DGIVLKVAYQGCXXXXXXXXXXXXXPNCETVPCEHFDTAFQAVQNWVADRAVLPLENSLG 353
DG L+VA+QG P CETVPC F A AV+ ADRAVLP+E+++
Sbjct: 289 DGSGLRVAFQGAPGAYSEFAAKTALPGCETVPCRAFADALAAVERGAADRAVLPVESTME 468
Query: 354 GSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGVKIENLKSAMSH 491
G+ RNYDLLLRH L +V E+ L V +CLLA PGV+ ++ +SH
Sbjct: 469 GTALRNYDLLLRHGLVVVHEINLFVHYCLLAMPGVRAAEVRRVISH 606
>gb|CW086424.1|CW086424 104_430_10946966_114_33017_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946966, DNA
sequence
Length = 651
Score = 75.3 bits (158), Expect(2) = 3e-025
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +3 / -3
Query: 882 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 1040
V D K+F+Y+FY+D +ASMAD + QNAL ++EF +FLRVLGSYP D+
Sbjct: 547 VDDANVGTAKHFEYMFYIDFQASMADVRAQNALAEIQEFTSFLRVLGSYPMDM 389
Score = 62.0 bits (129), Expect(2) = 3e-025
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3 / -3
Query: 783 GPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 899
G LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 649 GTSVLFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 533
>gb|BG102021.1|BG102021 RHIZ2_23_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 585
Score = 74.8 bits (157), Expect(2) = 1e-024
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = +3 / +1
Query: 882 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 1040
V D K+F+Y+FYVD +AS+A+P+ QNAL ++E+ +FLRVLGSYP D+
Sbjct: 94 VDDANVGTAKHFEYMFYVDFQASLAEPRAQNALAEVQEYTSFLRVLGSYPMDM 252
Score = 60.6 bits (126), Expect(2) = 1e-024
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +3 / +1
Query: 795 LFKALAVFALRDINLTKIESRPHKERPLRVSDDCS 899
LFK L+ FA RDI+LTKIESRPH+ RP+R+ DD +
Sbjct: 4 LFKVLSAFAFRDISLTKIESRPHRHRPIRLVDDAN 108
>gb|CB927745.1|CB927745 ABA1_27_D11.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_27_D11_A012 5', mRNA sequence
Length = 700
Score = 113 bits (241), Expect = 8e-024
Identities = 48/101 (47%), Positives = 62/101 (61%)
Frame = +3 / +2
Query: 174 DGIVLKVAYQGCXXXXXXXXXXXXXPNCETVPCEHFDTAFQAVQNWVADRAVLPLENSLG 353
DG L+VA+QG P CETVPC F A AV+ ADRAVLP+E+++
Sbjct: 389 DGSGLRVAFQGAPGAYSEFAAKTALPGCETVPCRAFADALAAVERGAADRAVLPVESTME 568
Query: 354 GSIHRNYDLLLRHSLHIVGEVRLAVRHCLLANPGVKIENLK 476
G+ RNYDLLLRH L +V E+ L V +CLLA PGV+ ++
Sbjct: 569 GTALRNYDLLLRHGLVVVXEINLFVHYCLLAMPGVRAAEVR 691
>gb|CW393523.1|CW393523 fsbb001f080j23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080j23, DNA
sequence
Length = 328
Score = 112 bits (239), Expect = 1e-023
Identities = 44/75 (58%), Positives = 52/75 (69%)
Frame = +3 / +2
Query: 177 GIVLKVAYQGCXXXXXXXXXXXXXPNCETVPCEHFDTAFQAVQNWVADRAVLPLENSLGG 356
G L+VAYQG P + +PC+ F+ AFQAV+ W+ADRAVLP+ENSLGG
Sbjct: 104 GSQLRVAYQGVPGAYSEKAAGKAYPGSDAIPCDQFEVAFQAVELWIADRAVLPVENSLGG 283
Query: 357 SIHRNYDLLLRHSLH 401
SIHRNYDLLLRH LH
Sbjct: 284 SIHRNYDLLLRHRLH 328
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,614,459,574
Number of Sequences: 832831
Number of extensions: 23387537
Number of successful extensions: 122518
Number of sequences better than 1.0e-020: 23
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 49670760480
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)