TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG103645.1|BG103645 RHIZ2_39_B02.g1_A003 Rhizome2 (RHIZ2... 292 1e-095
gb|BI140142.1|BI140142 IP1_49_F05.g1_A002 Immature pannicle... 265 2e-086
gb|CW031245.1|CW031245 104_259_10500694_116_30398 Sorghum m... 130 8e-080
gb|BG356820.1|BG356820 OV2_10_D07.g1_A002 Ovary 2 (OV2) Sor... 277 4e-077
gb|CW183336.1|CW183336 104_599_11164563_116_36671_012 Sorgh... 150 2e-056
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 81 4e-042
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 81 4e-042
gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed see... 81 4e-042
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 76 3e-039
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 76 7e-038
gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2... 78 2e-035
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 71 3e-034
gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient se... 71 8e-033
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 71 1e-031
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 64 7e-030
gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infecte... 73 3e-027
gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorgh... 78 3e-027
gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle... 64 6e-026
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 76 1e-024
gb|CW451706.1|CW451706 fsbb001f191o09k0 Sorghum methylation... 84 1e-021
>gb|BG103645.1|BG103645 RHIZ2_39_B02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 546
Score = 292 bits (632), Expect(2) = 1e-095
Identities = 123/140 (87%), Positives = 126/140 (90%)
Frame = -1 / +3
Query: 651 HNCGSCYYQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFTPFDSAVLHALIDVYQH* 472
HNCGSCYYQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFT FDSAVLHALI VY
Sbjct: 3 HNCGSCYYQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFTSFDSAVLHALIVVYHIR 182
Query: 471 NFCKLHGRYVPSTCSNCHTETL*LNQLAFLSSYNL*QNISGCL*HL*LMEHNNCISLATG 292
NFCKL GRYV S CSNCHT TL*LNQLA LSSYNL*QNISGCL*HL*LM+H++ IS ATG
Sbjct: 183 NFCKLCGRYVLSACSNCHT*TL*LNQLASLSSYNL*QNISGCL*HL*LMKHSSYISPATG 362
Query: 291 KQHMS*DCYAVGCYLNYIHY 232
KQHMS*DC AVGCYL YIHY
Sbjct: 363 KQHMS*DCDAVGCYLKYIHY 422
Score = 278 bits (601), Expect(2) = 2e-094
Identities = 122/141 (86%), Positives = 126/141 (89%)
Frame = +2 / -3
Query: 230 V*WM*FK*QPTA*QSQLMCCLPVARDMQLLCSINYRCYRHPLMFCQRL*LERKAN*FNYN 409
+*WM FK*QPTA QS LMCCLPVA DM LLC INYRCYR PLMFCQRL*LE +A+*FNYN
Sbjct: 424 M*WMYFK*QPTASQS*LMCCLPVAGDM*LLCFINYRCYRQPLMFCQRL*LESEAS*FNYN 245
Query: 410 VSVWQLEHVLGTYLP*SLQKF*C*YTSINA*STAESKGVNSPHSYPKSSCTSPFQF*AMA 589
V VWQLEH L TYLP SLQKF *YT+INA*STAESK VNSPHSYPKSSCTSPFQF*AMA
Sbjct: 244 VYVWQLEHALRTYLPQSLQKFLM*YTTINA*STAESKDVNSPHSYPKSSCTSPFQF*AMA 65
Query: 590 SYFHCSAVLHLP***QDPQLC 652
SYFHCSAVLHLP***QDPQLC
Sbjct: 64 SYFHCSAVLHLP***QDPQLC 2
Score = 261 bits (564), Expect(2) = 3e-087
Identities = 105/123 (85%), Positives = 108/123 (87%)
Frame = +3 / -1
Query: 285 AVYLWLEICNCCAPSTTDAIDIH*CFVRDCNLREKPTDLTTMFPCGSWSMCLEHIYHEAY 464
AVYLWLEICNCCA STT A D H*CFVRDCNLR KP DLTTMF CGSWSM L HIYH AY
Sbjct: 369 AVYLWLEICNCCASSTTGATDSH*CFVRDCNLRAKPVDLTTMFTCGSWSMRLGHIYHRAY 190
Query: 465 KNSNVDTHQSTHEALLNQRV*IVHIVIPKALVLLHSNFEPWLHISIVVQYCTFLDSSKIH 644
KN DT QSTHEALLNQR+*IVHI IPKALVLLHSNFEPWLHISIVVQYCTFLDS++IH
Sbjct: 189 KNF*CDTQQSTHEALLNQRM*IVHIAIPKALVLLHSNFEPWLHISIVVQYCTFLDSNRIH 10
Query: 645 SCV 653
SCV
Sbjct: 9 SCV 1
Score = 248 bits (535), Expect(2) = 6e-080
Identities = 113/133 (84%), Positives = 119/133 (89%)
Frame = +1 / -2
Query: 253 AAYCIAVSAHVLFTCG*RYAIVVLHQLQML*TSTDVLSEIVT*EKSQLI*LQCFRVAVGA 432
AAYCIAV AHVLFTCG RY VLHQLQ+L T+TDVLSEIVT*E+SQLI*LQC RVAVGA
Sbjct: 401 AAYCIAVLAHVLFTCGWRYVTAVLHQLQVLQTATDVLSEIVT*ERSQLI*LQCLRVAVGA 222
Query: 433 CAWNISTMKLTKILMLIHINQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS 612
CA +IST +LTKI +IH NQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS
Sbjct: 221 CA*DISTTELTKISNVIHNNQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS 42
Query: 613 TAPSLIVARSTVV 651
TAPSLIV STVV
Sbjct: 41 TAPSLIVTGSTVV 3
Score = 247 bits (534), Expect(2) = 2e-079
Identities = 107/123 (86%), Positives = 111/123 (90%)
Frame = -3 / +2
Query: 652 TQLWILLLSRKVQYCTTMEI*SHGSKLEWRSTRAFGITMWTIHTL*FSSASCVD*CVSTL 473
TQLWILLLSRKVQYCTTMEI*SHGSKLEWRSTRAFGI MWTIH L*FSSASCVD CVS
Sbjct: 2 TQLWILLLSRKVQYCTTMEI*SHGSKLEWRSTRAFGIAMWTIHIL*FSSASCVDCCVSH* 181
Query: 472 EFL*ASW*ICSKHMLQLPHGNIVVKSVGFSLKLQSLTKHQWMSIASVVDGAQQLHISSHR 293
+FL*A W*IC K MLQLPH NIVVKS GF+LKLQSLTKHQW+S+A VVD AQQLHISSHR
Sbjct: 182 KFL*ALW*ICPKRMLQLPHVNIVVKSTGFALKLQSLTKHQWLSVAPVVDEAQQLHISSHR 361
Query: 292 *TA 284
*TA
Sbjct: 362 *TA 370
Score = 243 bits (524), Expect(2) = 1e-075
Identities = 102/123 (82%), Positives = 108/123 (87%)
Frame = -2 / +1
Query: 653 YTTVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQCFMR*LMCINI 474
YTTVD TIKEGAVLHYNGNMKPWLKIGMEKYKSFWD+YVDYSHPLIQQCFMR*L+CI +
Sbjct: 1 YTTVDPVTIKEGAVLHYNGNMKPWLKIGMEKYKSFWDSYVDYSHPLIQQCFMR*LLCITL 180
Query: 473 RIFVSFMVDMFQAHAPTATRKHCS*ISWLFSQVTISDKTSVDVYSICS*WSTTIAYL*PQ 294
IFVS +VDM AHAPTATRKHCS*I+WL SQVTISDKTSV V S CS* ST + YL PQ
Sbjct: 181 EIFVSSVVDMS*AHAPTATRKHCS*INWLRSQVTISDKTSVAVCSTCS**STAVTYLQPQ 360
Query: 293 VNS 285
VNS
Sbjct: 361 VNS 369
Score = 90.0 bits (190), Expect(2) = 2e-094
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2 / -2
Query: 110 NLL*HINNLKSILHHLHSVAMSHPKNKKWKNYIDGRKL* 226
NLL*H+NNLKSILHHLHSV + HPKNKKWKNYIDGRKL*
Sbjct: 545 NLL*HLNNLKSILHHLHSVVLFHPKNKKWKNYIDGRKL* 429
Score = 82.6 bits (174), Expect(2) = 3e-087
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = +3 / -3
Query: 111 TCCNTSII*NQFYTISILWLCLTQKIKNGKITSMVASYD 227
TCCNT II*NQFY ISILW C TQKIKNGKIT MVASY+
Sbjct: 544 TCCNTLII*NQFYIISILWFCFTQKIKNGKITLMVASYE 428
Score = 79.4 bits (167), Expect(2) = 1e-095
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = -2 / +2
Query: 218 CDHRCNFSIFYFLGET*PQNGDGVELILNY*CVTTS 111
CDH+CNFSIFYFLGET PQNGD VELILNY* VTTS
Sbjct: 437 CDHQCNFSIFYFLGETEPQNGDDVELILNY*GVTTS 544
Score = 71.6 bits (150), Expect(2) = 6e-080
Identities = 32/37 (86%), Positives = 32/37 (86%)
Frame = +1 / -1
Query: 109 KLVVTHQ*FKINSTPSPFCGYVSPKK*KMEKLHRWSQ 219
KLVVT *FKINST SPFCG VSPKK*KMEKLH WSQ
Sbjct: 546 KLVVTP**FKINSTSSPFCGSVSPKK*KMEKLH*WSQ 436
Score = 70.7 bits (148), Expect(2) = 2e-079
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = -3 / +3
Query: 217 ATIDVIFPFFIFWVRHSHRMEMV*N*F*IIDVLQQV 110
ATI+VIFPFFIFWV+ +HRMEM+*N*F*II VLQQV
Sbjct: 438 ATINVIFPFFIFWVKQNHRMEMM*N*F*IIKVLQQV 545
Score = 62.5 bits (130), Expect(2) = 1e-075
Identities = 27/39 (69%), Positives = 28/39 (71%)
Frame = -1 / +1
Query: 225 HNLRPSMXXXXXXXFG*DIATEWRWCRIDFKLLMCYNKF 109
HNLRPSM FG*+ TEWR CRIDFKLL CYNKF
Sbjct: 430 HNLRPSM*FFHFLFFG*NRTTEWR*CRIDFKLLRCYNKF 546
>gb|BI140142.1|BI140142 IP1_49_F05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 265 bits (573), Expect(2) = 2e-085
Identities = 114/133 (85%), Positives = 118/133 (88%)
Frame = -1 / +3
Query: 630 YQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFTPFDSAVLHALIDVYQH*NFCKLHG 451
YQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFT FDSAVLHALI VY NFCKL G
Sbjct: 3 YQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFTSFDSAVLHALIVVYHIRNFCKLCG 182
Query: 450 RYVPSTCSNCHTETL*LNQLAFLSSYNL*QNISGCL*HL*LMEHNNCISLATGKQHMS*D 271
RYV S CSNCHT TL*LNQLA LSSYNL*QNISGCL*H+*LM+ ++ IS ATGKQHMS*D
Sbjct: 183 RYVLSACSNCHT*TL*LNQLASLSSYNL*QNISGCL*HM*LMKQSSYISPATGKQHMS*D 362
Query: 270 CYAVGCYLNYIHY 232
C AVGCYL YIHY
Sbjct: 363 CDAVGCYLKYIHY 401
Score = 258 bits (558), Expect(2) = 2e-086
Identities = 114/134 (85%), Positives = 118/134 (88%)
Frame = +2 / -3
Query: 230 V*WM*FK*QPTA*QSQLMCCLPVARDMQLLCSINYRCYRHPLMFCQRL*LERKAN*FNYN 409
+*WM FK*QPTA QS LMCCLPVA DM LLC INY CYR PLMFCQRL*LE +A+*FNYN
Sbjct: 403 M*WMYFK*QPTASQS*LMCCLPVAGDM*LLCFINYMCYRQPLMFCQRL*LESEAS*FNYN 224
Query: 410 VSVWQLEHVLGTYLP*SLQKF*C*YTSINA*STAESKGVNSPHSYPKSSCTSPFQF*AMA 589
V VWQLEH L TYLP SLQKF *YT+INA*STAESK VNSPHSYPKSSCTSPFQF*AMA
Sbjct: 223 VYVWQLEHALRTYLPQSLQKFLM*YTTINA*STAESKDVNSPHSYPKSSCTSPFQF*AMA 44
Query: 590 SYFHCSAVLHLP** 631
SYFHCSAVLHLP**
Sbjct: 43 SYFHCSAVLHLP** 2
Score = 241 bits (520), Expect(2) = 5e-078
Identities = 99/116 (85%), Positives = 100/116 (86%)
Frame = +3 / -1
Query: 285 AVYLWLEICNCCAPSTTDAIDIH*CFVRDCNLREKPTDLTTMFPCGSWSMCLEHIYHEAY 464
AVYLWLEICNC A STT A D H*CFVRDCNLR KP DLTTMF CGSWSM L HIYH AY
Sbjct: 348 AVYLWLEICNCSASSTTCATDSH*CFVRDCNLRAKPVDLTTMFTCGSWSMRLGHIYHRAY 169
Query: 465 KNSNVDTHQSTHEALLNQRV*IVHIVIPKALVLLHSNFEPWLHISIVVQYCTFLDS 632
KN DT QSTHEALLNQR+*IVHI IPKALVLLHSNFEPWLHISIVVQYCTFLDS
Sbjct: 168 KNF*CDTQQSTHEALLNQRM*IVHIAIPKALVLLHSNFEPWLHISIVVQYCTFLDS 1
Score = 235 bits (508), Expect(2) = 4e-075
Identities = 106/126 (84%), Positives = 113/126 (89%)
Frame = +1 / -2
Query: 253 AAYCIAVSAHVLFTCG*RYAIVVLHQLQML*TSTDVLSEIVT*EKSQLI*LQCFRVAVGA 432
AAYCIAV AHVLFTCG RY +LHQL +L T+TDVLSEIVT*E+SQLI*LQC RVAVGA
Sbjct: 380 AAYCIAVLAHVLFTCGWRYVTALLHQLHVLQTATDVLSEIVT*ERSQLI*LQCLRVAVGA 201
Query: 433 CAWNISTMKLTKILMLIHINQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS 612
CA +IST +LTKI +IH NQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS
Sbjct: 200 CA*DISTTELTKISNVIHNNQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS 21
Query: 613 TAPSLI 630
TAPSLI
Sbjct: 20 TAPSLI 3
Score = 229 bits (494), Expect(2) = 3e-068
Identities = 96/116 (82%), Positives = 102/116 (87%)
Frame = -2 / +1
Query: 632 TIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQCFMR*LMCINIRIFVSFM 453
TIKEGAVLHYNGNMKPWLKIGMEKYKSFWD+YVDYSHPLIQQCFMR*L+CI + IFVS +
Sbjct: 1 TIKEGAVLHYNGNMKPWLKIGMEKYKSFWDSYVDYSHPLIQQCFMR*LLCITLEIFVSSV 180
Query: 452 VDMFQAHAPTATRKHCS*ISWLFSQVTISDKTSVDVYSICS*WSTTIAYL*PQVNS 285
VDM AHAPTATRKHCS*I+WL SQVTISDKTSV V S CS* S + YL PQVNS
Sbjct: 181 VDMS*AHAPTATRKHCS*INWLRSQVTISDKTSVAVCSTCS**SRAVTYLQPQVNS 348
Score = 229 bits (494), Expect(2) = 6e-072
Identities = 99/116 (85%), Positives = 104/116 (89%)
Frame = -3 / +2
Query: 631 LSRKVQYCTTMEI*SHGSKLEWRSTRAFGITMWTIHTL*FSSASCVD*CVSTLEFL*ASW 452
LSRKVQYCTTMEI*SHGSKLEWRSTRAFGI MWTIH L*FSSASCVD CVS +FL*A W
Sbjct: 2 LSRKVQYCTTMEI*SHGSKLEWRSTRAFGIAMWTIHIL*FSSASCVDCCVSH*KFL*ALW 181
Query: 451 *ICSKHMLQLPHGNIVVKSVGFSLKLQSLTKHQWMSIASVVDGAQQLHISSHR*TA 284
*IC K MLQLPH NIVVKS GF+LKLQSLTKHQW+S+A VVD A+QLHISSHR*TA
Sbjct: 182 *ICPKRMLQLPHVNIVVKSTGFALKLQSLTKHQWLSVAHVVDEAEQLHISSHR*TA 349
Score = 83.1 bits (175), Expect(2) = 2e-086
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2 / -2
Query: 122 HINNLKSILHHLHSVAMSHPKNKKWKNYIDGRKL* 226
H+NNLKSILHHLHSV + HPKNKKWKNYIDGRKL*
Sbjct: 512 HLNNLKSILHHLHSVVLFHPKNKKWKNYIDGRKL* 408
Score = 72.5 bits (152), Expect(2) = 2e-085
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = -2 / +2
Query: 218 CDHRCNFSIFYFLGET*PQNGDGVELILNY* 126
CDH+CNFSIFYFLGET PQNGD VELILNY*
Sbjct: 416 CDHQCNFSIFYFLGETEPQNGDDVELILNY* 508
Score = 72.1 bits (151), Expect(2) = 5e-078
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3 / -3
Query: 123 TSII*NQFYTISILWLCLTQKIKNGKITSMVASYD 227
TSII*NQFY ISILW C TQKIKNGKIT MVASY+
Sbjct: 511 TSII*NQFYIISILWFCFTQKIKNGKITLMVASYE 407
Score = 68.0 bits (142), Expect(2) = 4e-075
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1 / -1
Query: 121 THQ*FKINSTPSPFCGYVSPKK*KMEKLHRWSQ 219
T Q*FKINST SPFCG VSPKK*KMEKLH WSQ
Sbjct: 513 TPQ*FKINSTSSPFCGSVSPKK*KMEKLH*WSQ 415
Score = 63.8 bits (133), Expect(2) = 6e-072
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = -3 / +3
Query: 217 ATIDVIFPFFIFWVRHSHRMEMV*N*F*IIDV 122
ATI+VIFPFFIFWV+ +HRMEM+*N*F*II+V
Sbjct: 417 ATINVIFPFFIFWVKQNHRMEMM*N*F*IIEV 512
Score = 51.5 bits (106), Expect(2) = 3e-068
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = -1 / +1
Query: 225 HNLRPSMXXXXXXXFG*DIATEWRWCRIDFKLLMC 121
HNLRPSM FG*+ TEWR CRIDFKLL C
Sbjct: 409 HNLRPSM*FFHFLFFG*NRTTEWR*CRIDFKLLRC 513
>gb|CW031245.1|CW031245 104_259_10500694_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500694, DNA
sequence
Length = 591
Score = 130 bits (278), Expect(6) = 4e-079
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = -1 / -3
Query: 432 CSNCHTETL*LNQLAFLSSYNL*QNISGCL*HL*LMEHNNCISLATGKQHMS*DCYAVGC 253
CSNCHT TL*LNQLA LSSYNL*QNISGCL*H+*LM+ ++ IS ATGKQHMS*DC AVGC
Sbjct: 349 CSNCHT*TL*LNQLASLSSYNL*QNISGCL*HM*LMKQSSYISPATGKQHMS*DCDAVGC 170
Query: 252 YLNYIHY 232
YL YIHY
Sbjct: 169 YLKYIHY 149
Score = 129 bits (276), Expect(6) = 8e-080
Identities = 55/68 (80%), Positives = 58/68 (85%)
Frame = +2 / +3
Query: 230 V*WM*FK*QPTA*QSQLMCCLPVARDMQLLCSINYRCYRHPLMFCQRL*LERKAN*FNYN 409
+*WM FK*QPTA QS LMCCLPVA DM LLC INY CYR PLMFCQRL*LE +A+*FNYN
Sbjct: 147 M*WMYFK*QPTASQS*LMCCLPVAGDM*LLCFINYMCYRQPLMFCQRL*LESEAS*FNYN 326
Query: 410 VSVWQLEH 433
V VWQLEH
Sbjct: 327 VYVWQLEH 350
Score = 108 bits (230), Expect(6) = 2e-065
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3 / +1
Query: 285 AVYLWLEICNCCAPSTTDAIDIH*CFVRDCNLREKPTDLTTMFPCGSWSMCL 440
AVYLWLEICNC A STT A D H*CFVRDCNLR KP DLTTMF CGSWS+ L
Sbjct: 202 AVYLWLEICNCSASSTTCATDSH*CFVRDCNLRAKPVDLTTMFTCGSWSIAL 357
Score = 107 bits (228), Expect(6) = 7e-060
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +1 / +2
Query: 253 AAYCIAVSAHVLFTCG*RYAIVVLHQLQML*TSTDVLSEIVT*EKSQLI*LQCFRVAVGA 432
AAYCIAV AHVLFTCG RY +LHQL +L T+TDVLSEIVT*E+SQLI*LQC RVAVGA
Sbjct: 170 AAYCIAVLAHVLFTCGWRYVTALLHQLHVLQTATDVLSEIVT*ERSQLI*LQCLRVAVGA 349
Score = 105 bits (224), Expect(6) = 8e-080
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = +2 / +2
Query: 86 NKYG*VTQNLL*HINNLKSILHHLHSVAMSHPKNKKWKNYIDGRKL* 226
NKYG VTQNLL*H+NNLKSILHHLHSV + HPKNKKWKNYIDGRKL*
Sbjct: 2 NKYGYVTQNLL*HLNNLKSILHHLHSVVLFHPKNKKWKNYIDGRKL* 142
Score = 100 bits (212), Expect(6) = 2e-065
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -3 / -2
Query: 433 MLQLPHGNIVVKSVGFSLKLQSLTKHQWMSIASVVDGAQQLHISSHR*TA 284
MLQLPH NIVVKS GF+LKLQSLTKHQW+S+A VVD A+QLHISSHR*TA
Sbjct: 350 MLQLPHVNIVVKSTGFALKLQSLTKHQWLSVAHVVDEAEQLHISSHR*TA 201
Score = 96.4 bits (204), Expect(6) = 2e-065
Identities = 40/47 (85%), Positives = 41/47 (87%)
Frame = +3 / +3
Query: 87 INMDR*RKTCCNTSII*NQFYTISILWLCLTQKIKNGKITSMVASYD 227
INMD * KTCCNTSII*NQFY ISILW C TQKIKNGKIT MVASY+
Sbjct: 3 INMDM*LKTCCNTSII*NQFYIISILWFCFTQKIKNGKITLMVASYE 143
Score = 93.2 bits (197), Expect(6) = 4e-079
Identities = 38/44 (86%), Positives = 39/44 (88%)
Frame = -2 / -2
Query: 218 CDHRCNFSIFYFLGET*PQNGDGVELILNY*CVTTSFALPIHIY 87
CDH+CNFSIFYFLGET PQNGD VELILNY* VTTSF L IHIY
Sbjct: 134 CDHQCNFSIFYFLGETEPQNGDDVELILNY*GVTTSFELHIHIY 3
Score = 89.0 bits (188), Expect(6) = 7e-060
Identities = 39/45 (86%), Positives = 40/45 (88%)
Frame = +1 / +1
Query: 85 Q*IWIGNAKLVVTHQ*FKINSTPSPFCGYVSPKK*KMEKLHRWSQ 219
Q*IWI N+KLVVT Q*FKINST SPFCG VSPKK*KMEKLH WSQ
Sbjct: 1 Q*IWICNSKLVVTPQ*FKINSTSSPFCGSVSPKK*KMEKLH*WSQ 135
Score = 85.8 bits (181), Expect(6) = 2e-065
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = -3 / -3
Query: 217 ATIDVIFPFFIFWVRHSHRMEMV*N*F*IIDVLQQVLRYLSIFI 86
ATI+VIFPFFIFWV+ +HRMEM+*N*F*II+VLQQVL Y+SIFI
Sbjct: 133 ATINVIFPFFIFWVKQNHRMEMM*N*F*IIEVLQQVLSYISIFI 2
Score = 84.0 bits (177), Expect(6) = 2e-054
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = -2 / -1
Query: 434 HAPTATRKHCS*ISWLFSQVTISDKTSVDVYSICS*WSTTIAYL*PQVNS 285
+APTATRKHCS*I+WL SQVTISDKTSV V S CS* S + YL PQVNS
Sbjct: 351 NAPTATRKHCS*INWLRSQVTISDKTSVAVCSTCS**SRAVTYLQPQVNS 202
Score = 78.0 bits (164), Expect(6) = 2e-054
Identities = 34/47 (72%), Positives = 35/47 (74%)
Frame = -1 / -1
Query: 225 HNLRPSMXXXXXXXFG*DIATEWRWCRIDFKLLMCYNKFCVTYPYLL 85
HNLRPSM FG*+ TEWR CRIDFKLL CYNKF VTYPYLL
Sbjct: 141 HNLRPSM*FFHFLFFG*NRTTEWR*CRIDFKLLRCYNKF*VTYPYLL 1
Score = 45.1 bits (92), Expect(6) = 2e-065
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -3 / -1
Query: 640 ILLLSRKVQYCTTMEI*SHGSKLEWRSTRAF 548
+LL + + TTMEI*SHGSKLEWR ++F
Sbjct: 561 LLLSKERCRTATTMEI*SHGSKLEWRKYKSF 469
Score = 44.6 bits (91), Expect(6) = 8e-080
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = +3 / +2
Query: 438 LEHIYHEAYKNSNVDTHQSTHEALLNQR 521
L HIYH AYKN DT QSTHEAL +
Sbjct: 356 LGHIYHRAYKNF*CDTQQSTHEALAESK 439
Score = 44.1 bits (90), Expect(6) = 4e-079
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -2 / -3
Query: 608 HYNGNMKPWLKIGMEK 561
HY+GNMKPWLKIGMEK
Sbjct: 529 HYHGNMKPWLKIGMEK 482
Score = 43.2 bits (88), Expect(6) = 4e-079
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / -2
Query: 666 FGTWLHNCGSCYY 628
FGTWLHNCGSCYY
Sbjct: 590 FGTWLHNCGSCYY 552
Score = 42.8 bits (87), Expect(6) = 8e-080
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3 / +2
Query: 549 KALVLLHSNFEPWLHISIVV 608
K L LHSNFEPWLHIS+VV
Sbjct: 470 KLLYFLHSNFEPWLHISMVV 529
Score = 41.8 bits (85), Expect(6) = 2e-054
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -1 / -2
Query: 606 LQWKYEAMAQNWNGEVQELLG 544
L WKYEAMAQNWNGE G
Sbjct: 527 LPWKYEAMAQNWNGESTRAFG 465
Score = 41.4 bits (84), Expect(6) = 4e-079
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -2 / -3
Query: 509 QCFMR*LMCINIRIFVSFMVDM 444
QCFMR*L+CI + IFVS +VDM
Sbjct: 427 QCFMR*LLCITLEIFVSSVVDM 362
Score = 40.9 bits (83), Expect(6) = 2e-065
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +2 / +1
Query: 437 LGTYLP*SLQKF*C*YTSINA*STAESKG 523
L TYLP SLQKF *YT+INA*ST KG
Sbjct: 355 LRTYLPQSLQKFLM*YTTINA*STG*IKG 441
Score = 40.5 bits (82), Expect(6) = 2e-054
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = -3 / -1
Query: 511 SSASCVD*CVSTLEFL*ASW*ICSK 437
+SASCVD CVS +FL*A W*IC K
Sbjct: 429 ASASCVDCCVSH*KFL*ALW*ICPK 355
Score = 40.5 bits (82), Expect(6) = 2e-065
Identities = 19/29 (65%), Positives = 19/29 (65%)
Frame = -1 / -2
Query: 522 PFDSAVLHALIDVYQH*NFCKLHGRYVPS 436
P VLHALI VY NFCKL GRYV S
Sbjct: 440 PLIQPVLHALIVVYHIRNFCKLCGRYVLS 354
Score = 40.0 bits (81), Expect(6) = 7e-060
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1 / +3
Query: 433 CAWNISTMKLTKILMLIHINQRMKH 507
CA +IST +LTKI +IH NQRMKH
Sbjct: 351 CA*DISTTELTKISNVIHNNQRMKH 425
Score = 39.1 bits (79), Expect(6) = 2e-065
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -3 / -1
Query: 667 FWDLATQLWILLLSRK 620
FWDLATQLWILLLS++
Sbjct: 591 FWDLATQLWILLLSKE 544
Score = 38.2 bits (77), Expect(6) = 2e-065
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +2 / +1
Query: 545 PKSSCTSPFQF*AMASYFHCS 607
PK+ SPFQF*AMASYFH S
Sbjct: 466 PKALVLSPFQF*AMASYFHGS 528
Score = 38.2 bits (77), Expect(6) = 4e-079
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2 / -1
Query: 578 KIGMEKYKSFWDNYVDYS 525
K+ KYKSFWD+YVDYS
Sbjct: 498 KLEWRKYKSFWDSYVDYS 445
Score = 36.8 bits (74), Expect(6) = 8e-080
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / +3
Query: 524 VNSPHSYPKSSCT 562
VNSPHSYPKSSCT
Sbjct: 444 VNSPHSYPKSSCT 482
Score = 35.0 bits (70), Expect(6) = 7e-060
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1 / +3
Query: 562 FSIPILSHGFIFP 600
FSIPILSHGFIFP
Sbjct: 483 FSIPILSHGFIFP 521
Score = 33.6 bits (67), Expect(6) = 8e-080
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3 / +2
Query: 624 LDSSKIHSCVAKSQ 665
LDSS+IHSCVAKSQ
Sbjct: 548 LDSSRIHSCVAKSQ 589
Score = 33.6 bits (67), Expect(6) = 2e-065
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -3 / -2
Query: 562 STRAFGITMWTIH 524
STRAFGI MWTIH
Sbjct: 482 STRAFGIAMWTIH 444
Score = 32.2 bits (64), Expect(6) = 2e-054
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -1 / -3
Query: 564 EVQELLG*LCGLFT 523
+VQELLG*LCGLFT
Sbjct: 484 KVQELLG*LCGLFT 443
Score = 31.8 bits (63), Expect(6) = 2e-065
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / +1
Query: 629 **QDPQLCSQVPK 667
**QDPQLCSQVPK
Sbjct: 553 **QDPQLCSQVPK 591
Score = 29.5 bits (58), Expect(6) = 2e-054
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -3
Query: 665 LGLGYTTVDLATIK 624
LGLGYTTVD ATI+
Sbjct: 589 LGLGYTTVDPATIQ 548
Score = 28.6 bits (56), Expect(6) = 2e-065
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1 / +2
Query: 517 KGCE*ST*LSQKLLYF 564
K E*ST*LSQKLLYF
Sbjct: 437 KDGE*ST*LSQKLLYF 484
Score = 27.2 bits (53), Expect(6) = 7e-060
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / +1
Query: 525 *IVHIVIPKALVL 563
*IVHI IPKALVL
Sbjct: 445 *IVHIAIPKALVL 483
Score = 26.3 bits (51), Expect(6) = 7e-060
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 628 IVARSTVV*PSPK 666
IVA STVV*PSPK
Sbjct: 552 IVAGSTVV*PSPK 590
>gb|BG356820.1|BG356820 OV2_10_D07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 277 bits (599), Expect(2) = 4e-077
Identities = 118/137 (86%), Positives = 122/137 (89%)
Frame = -1 / +3
Query: 642 GSCYYQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFTPFDSAVLHALIDVYQH*NFC 463
GSCYYQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFT FDSAVLHALI VY NFC
Sbjct: 3 GSCYYQGRCSTALQWKYEAMAQNWNGEVQELLG*LCGLFTSFDSAVLHALIVVYHIRNFC 182
Query: 462 KLHGRYVPSTCSNCHTETL*LNQLAFLSSYNL*QNISGCL*HL*LMEHNNCISLATGKQH 283
KL GRYV S CSNCHT TL*LNQLA LSSYNL*QNISGCL*H+*LM+ ++ IS ATGKQH
Sbjct: 183 KLCGRYVLSACSNCHT*TL*LNQLASLSSYNL*QNISGCL*HM*LMKQSSYISPATGKQH 362
Query: 282 MS*DCYAVGCYLNYIHY 232
MS*DC AVGCYL YIHY
Sbjct: 363 MS*DCDAVGCYLKYIHY 413
Score = 267 bits (577), Expect(2) = 1e-074
Identities = 118/138 (85%), Positives = 122/138 (88%)
Frame = +2 / -1
Query: 230 V*WM*FK*QPTA*QSQLMCCLPVARDMQLLCSINYRCYRHPLMFCQRL*LERKAN*FNYN 409
+*WM FK*QPTA QS LMCCLPVA DM LLC INY CYR PLMFCQRL*LE +A+*FNYN
Sbjct: 415 M*WMYFK*QPTASQS*LMCCLPVAGDM*LLCFINYMCYRQPLMFCQRL*LESEAS*FNYN 236
Query: 410 VSVWQLEHVLGTYLP*SLQKF*C*YTSINA*STAESKGVNSPHSYPKSSCTSPFQF*AMA 589
V VWQLEH L TYLP SLQKF *YT+INA*STAESK VNSPHSYPKSSCTSPFQF*AMA
Sbjct: 235 VYVWQLEHALRTYLPQSLQKFLM*YTTINA*STAESKDVNSPHSYPKSSCTSPFQF*AMA 56
Query: 590 SYFHCSAVLHLP***QDP 643
SYFHCSAVLHLP***QDP
Sbjct: 55 SYFHCSAVLHLP***QDP 2
Score = 249 bits (538), Expect(2) = 8e-068
Identities = 102/120 (85%), Positives = 104/120 (86%)
Frame = +3 / -2
Query: 285 AVYLWLEICNCCAPSTTDAIDIH*CFVRDCNLREKPTDLTTMFPCGSWSMCLEHIYHEAY 464
AVYLWLEICNC A STT A D H*CFVRDCNLR KP DLTTMF CGSWSM L HIYH AY
Sbjct: 360 AVYLWLEICNCSASSTTCATDSH*CFVRDCNLRAKPVDLTTMFTCGSWSMRLGHIYHRAY 181
Query: 465 KNSNVDTHQSTHEALLNQRV*IVHIVIPKALVLLHSNFEPWLHISIVVQYCTFLDSSKIH 644
KN DT QSTHEALLNQR+*IVHI IPKALVLLHSNFEPWLHISIVVQYCTFLDSS+IH
Sbjct: 180 KNF*CDTQQSTHEALLNQRM*IVHIAIPKALVLLHSNFEPWLHISIVVQYCTFLDSSRIH 1
Score = 240 bits (518), Expect(2) = 3e-064
Identities = 109/130 (83%), Positives = 116/130 (89%)
Frame = +1 / -3
Query: 253 AAYCIAVSAHVLFTCG*RYAIVVLHQLQML*TSTDVLSEIVT*EKSQLI*LQCFRVAVGA 432
AAYCIAV AHVLFTCG RY +LHQL +L T+TDVLSEIVT*E+SQLI*LQC RVAVGA
Sbjct: 392 AAYCIAVLAHVLFTCGWRYVTALLHQLHVLQTATDVLSEIVT*ERSQLI*LQCLRVAVGA 213
Query: 433 CAWNISTMKLTKILMLIHINQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS 612
CA +IST +LTKI +IH NQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS
Sbjct: 212 CA*DISTTELTKISNVIHNNQRMKHC*IKGCE*ST*LSQKLLYFSIPILSHGFIFPL*CS 33
Query: 613 TAPSLIVARS 642
TAPSLIVA S
Sbjct: 32 TAPSLIVAGS 3
Score = 239 bits (517), Expect(2) = 3e-063
Identities = 103/120 (85%), Positives = 108/120 (90%)
Frame = -3 / +2
Query: 643 WILLLSRKVQYCTTMEI*SHGSKLEWRSTRAFGITMWTIHTL*FSSASCVD*CVSTLEFL 464
WILLLSRKVQYCTTMEI*SHGSKLEWRSTRAFGI MWTIH L*FSSASCVD CVS +FL
Sbjct: 2 WILLLSRKVQYCTTMEI*SHGSKLEWRSTRAFGIAMWTIHIL*FSSASCVDCCVSH*KFL 181
Query: 463 *ASW*ICSKHMLQLPHGNIVVKSVGFSLKLQSLTKHQWMSIASVVDGAQQLHISSHR*TA 284
*A W*IC K MLQLPH NIVVKS GF+LKLQSLTKHQW+S+A VVD A+QLHISSHR*TA
Sbjct: 182 *ALW*ICPKRMLQLPHVNIVVKSTGFALKLQSLTKHQWLSVAHVVDEAEQLHISSHR*TA 361
Score = 234 bits (505), Expect = 2e-060
Identities = 99/120 (82%), Positives = 105/120 (87%)
Frame = -2 / +1
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQCFMR*LMCINIRIF 465
VD ATIKEGAVLHYNGNMKPWLKIGMEKYKSFWD+YVDYSHPLIQQCFMR*L+CI + IF
Sbjct: 1 VDPATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDSYVDYSHPLIQQCFMR*LLCITLEIF 180
Query: 464 VSFMVDMFQAHAPTATRKHCS*ISWLFSQVTISDKTSVDVYSICS*WSTTIAYL*PQVNS 285
VS +VDM AHAPTATRKHCS*I+WL SQVTISDKTSV V S CS* S + YL PQVNS
Sbjct: 181 VSSVVDMS*AHAPTATRKHCS*INWLRSQVTISDKTSVAVCSTCS**SRAVTYLQPQVNS 360
Score = 35.0 bits (70), Expect(2) = 1e-074
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / -3
Query: 188 KKWKNYIDGRKL* 226
KKWKNYIDGRKL*
Sbjct: 458 KKWKNYIDGRKL* 420
Score = 33.1 bits (66), Expect(2) = 4e-077
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 218 CDHRCNFSIFY 186
CDH+CNFSIFY
Sbjct: 428 CDHQCNFSIFY 460
Score = 29.9 bits (59), Expect(2) = 8e-068
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3 / -1
Query: 180 QKIKNGKITSMVASYD 227
+ IKNGKIT MVASY+
Sbjct: 466 KXIKNGKITLMVASYE 419
Score = 27.2 bits (53), Expect(2) = 3e-064
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1 / -2
Query: 181 KK*KMEKLHRWSQ 219
K *KMEKLH WSQ
Sbjct: 465 KX*KMEKLH*WSQ 427
Score = 24.4 bits (47), Expect(2) = 3e-063
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3 / +3
Query: 217 ATIDVIFPFF 188
ATI+VIFPFF
Sbjct: 429 ATINVIFPFF 458
>gb|CW183336.1|CW183336 104_599_11164563_116_36671_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164563, DNA
sequence
Length = 706
Score = 150 bits (322), Expect(2) = 2e-056
Identities = 61/70 (87%), Positives = 63/70 (90%)
Frame = -2 / +3
Query: 218 CDHRCNFSIFYFLGET*PQNGDGVELILNY*CVTTSFALPIHIYWMLKTYGS*ALFCLFI 39
CDH+CNFSIFYFLGET PQNGD VELILNY* VTTSF L IHIYWMLKTY S*A FCLFI
Sbjct: 156 CDHQCNFSIFYFLGETEPQNGDDVELILNY*GVTTSFELHIHIYWMLKTYNS*AFFCLFI 335
Query: 38 YTC*EVKSHL 9
YTC*EVKSH+
Sbjct: 336 YTC*EVKSHI 365
Score = 146 bits (314), Expect(2) = 2e-055
Identities = 62/70 (88%), Positives = 64/70 (91%)
Frame = +2 / -2
Query: 17 TLLLNMYK*TNRKGLSCHKSLTSNKYG*VTQNLL*HINNLKSILHHLHSVAMSHPKNKKW 196
TLLLNMYK* NRK LSC KSLTSNKYG VTQNLL*H+NNLKSILHHLHSV + HPKNKKW
Sbjct: 357 TLLLNMYK*INRKRLSCCKSLTSNKYGYVTQNLL*HLNNLKSILHHLHSVVLFHPKNKKW 178
Query: 197 KNYIDGRKL* 226
KNYIDGRKL*
Sbjct: 177 KNYIDGRKL* 148
Score = 144 bits (309), Expect(2) = 1e-048
Identities = 61/73 (83%), Positives = 64/73 (87%)
Frame = +3 / -3
Query: 9 EMRLYFSTCINKQTEKGLAAISL*HPINMDR*RKTCCNTSII*NQFYTISILWLCLTQKI 188
+M LYFSTCINK TEKGLA +SL*HPINMD * KTCCNTSII*NQFY ISILW C TQKI
Sbjct: 365 DM*LYFSTCINK*TEKGLAVVSL*HPINMDM*LKTCCNTSII*NQFYIISILWFCFTQKI 186
Query: 189 KNGKITSMVASYD 227
KNGKIT MVASY+
Sbjct: 185 KNGKITLMVASYE 147
Score = 131 bits (281), Expect(2) = 8e-042
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +1 / -1
Query: 16 DFTSQHV*INKQKRA*LP*VFNIQ*IWIGNAKLVVTHQ*FKINSTPSPFCGYVSPKK*KM 195
DFTSQHV*INKQK+A*L *VFNIQ*IWI N+KLVVT Q*FKINST SPFCG VSPKK*KM
Sbjct: 358 DFTSQHV*INKQKKA*LL*VFNIQ*IWICNSKLVVTPQ*FKINSTSSPFCGSVSPKK*KM 179
Query: 196 EKLHRWSQ 219
EKLH WSQ
Sbjct: 178 EKLH*WSQ 155
Score = 130 bits (279), Expect(2) = 3e-041
Identities = 58/70 (82%), Positives = 64/70 (91%)
Frame = -3 / +1
Query: 217 ATIDVIFPFFIFWVRHSHRMEMV*N*F*IIDVLQQVLRYLSIFIGC*RLMAAKPFSVCLF 38
ATI+VIFPFFIFWV+ +HRMEM+*N*F*II+VLQQVL Y+SIFIGC*RL AKPFSV LF
Sbjct: 157 ATINVIFPFFIFWVKQNHRMEMM*N*F*IIEVLQQVLSYISIFIGC*RLTTAKPFSVYLF 336
Query: 37 IHVEK*SLIS 8
IHVEK*S IS
Sbjct: 337 IHVEK*SHIS 366
Score = 122 bits (262), Expect(2) = 2e-033
Identities = 54/71 (76%), Positives = 57/71 (80%)
Frame = -1 / +2
Query: 225 HNLRPSMXXXXXXXFG*DIATEWRWCRIDFKLLMCYNKFCVTYPYLLDVKDLWQLSPFLF 46
HNLRPSM FG*+ TEWR CRIDFKLL CYNKF VTYPYLLDVKDL QLS FLF
Sbjct: 149 HNLRPSM*FFHFLFFG*NRTTEWR*CRIDFKLLRCYNKF*VTYPYLLDVKDLQQLSLFLF 328
Query: 45 VYLYMLRSKVS 13
+YLYMLRSKV+
Sbjct: 329 IYLYMLRSKVT 361
Score = 90.9 bits (192), Expect(2) = 2e-055
Identities = 38/47 (80%), Positives = 39/47 (82%)
Frame = +2 / -3
Query: 230 V*WM*FK*QPTA*QSQLMCCLPVARDMQLLCSINYRCYRHPLMFCQR 370
+*WM FK*QPTA QS LMCCLPVA DM LLC INY CYR PLMFCQR
Sbjct: 143 M*WMYFK*QPTASQS*LMCCLPVAGDM*LLCFINYMCYRQPLMFCQR 3
Score = 90.4 bits (191), Expect(2) = 2e-056
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = -1 / +1
Query: 372 NL*QNISGCL*HL*LMEHNNCISLATGKQHMS*DCYAVGCYLNYIHY 232
NL*QNISGCL*H+*LM+ ++ IS ATGKQHMS*DC AVGCYL YIHY
Sbjct: 1 NL*QNISGCL*HM*LMKQSSYISPATGKQHMS*DCDAVGCYLKYIHY 141
Score = 70.7 bits (148), Expect(2) = 1e-048
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +1 / -2
Query: 253 AAYCIAVSAHVLFTCG*RYAIVVLHQLQML*TSTDVLSEI 372
AAYCIAV AHVLFTCG RY +LHQL +L T+TDVLSEI
Sbjct: 120 AAYCIAVLAHVLFTCGWRYVTALLHQLHVLQTATDVLSEI 1
Score = 60.6 bits (126), Expect(2) = 8e-042
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +3 / -1
Query: 285 AVYLWLEICNCCAPSTTDAIDIH*CFVRD 371
AVYLWLEICNC A STT A D H*CFVRD
Sbjct: 88 AVYLWLEICNCSASSTTCATDSH*CFVRD 2
Score = 59.7 bits (124), Expect(2) = 3e-041
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = -3 / +3
Query: 370 SLTKHQWMSIASVVDGAQQLHISSHR*TA 284
SLTKHQW+S+A VVD A+QLHISSHR*TA
Sbjct: 3 SLTKHQWLSVAHVVDEAEQLHISSHR*TA 89
Score = 41.4 bits (84), Expect(2) = 2e-033
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = -2 / +2
Query: 371 ISDKTSVDVYSICS*WSTTIAYL*PQVNS 285
ISDKTSV V S CS* S + YL PQVNS
Sbjct: 2 ISDKTSVAVCSTCS**SRAVTYLQPQVNS 88
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 81.3 bits (171), Expect(3) = 4e-042
Identities = 26/59 (44%), Positives = 42/59 (71%)
Frame = -2 / +1
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQCFMR*LMCINIRI 468
+D I+ AV+HYNGNMKPWLK+ + +YK W+ YV+ SHP +++C + * +C ++ +
Sbjct: 328 IDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYV 504
Score = 65.7 bits (137), Expect(3) = 4e-042
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = -2 / +1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LW+ G+LP GLL FYGL+E LD +WHVLGLGY
Sbjct: 214 DLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 318
Score = 64.8 bits (135), Expect(3) = 4e-042
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = -3 / +1
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERNVIILYGSLG 731
WAFGMN+ DL+ WR +N T +YHYWQE+N +L G
Sbjct: 124 WAFGMNIFDLIAWRKENATSLYHYWQEQNSDLLLWRTG 237
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 81.3 bits (171), Expect(3) = 4e-042
Identities = 26/59 (44%), Positives = 42/59 (71%)
Frame = -2 / +1
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQCFMR*LMCINIRI 468
+D I+ AV+HYNGNMKPWLK+ + +YK W+ YV+ SHP +++C + * +C ++ +
Sbjct: 286 IDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYV 462
Score = 65.7 bits (137), Expect(3) = 4e-042
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = -2 / +1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LW+ G+LP GLL FYGL+E LD +WHVLGLGY
Sbjct: 172 DLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 276
Score = 64.8 bits (135), Expect(3) = 4e-042
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = -3 / +1
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERNVIILYGSLG 731
WAFGMN+ DL+ WR +N T +YHYWQE+N +L G
Sbjct: 82 WAFGMNIFDLIAWRKENATSLYHYWQEQNSDLLLWRTG 195
>gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_17_C07_A012 3', mRNA sequence
Length = 683
Score = 81.3 bits (171), Expect(3) = 4e-042
Identities = 26/59 (44%), Positives = 42/59 (71%)
Frame = -2 / +3
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQCFMR*LMCINIRI 468
+D I+ AV+HYNGNMKPWLK+ + +YK W+ YV+ SHP +++C + * +C ++ +
Sbjct: 207 IDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLYV 383
Score = 65.7 bits (137), Expect(3) = 4e-042
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = -2 / +3
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LW+ G+LP GLL FYGL+E LD +WHVLGLGY
Sbjct: 93 DLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 197
Score = 64.8 bits (135), Expect(3) = 4e-042
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = -3 / +3
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERNVIILYGSLG 731
WAFGMN+ DL+ WR +N T +YHYWQE+N +L G
Sbjct: 3 WAFGMNIFDLIAWRKENATSLYHYWQEQNSDLLLWRTG 116
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 76.2 bits (160), Expect(3) = 3e-039
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++D + I AV+HYNGNMKPWL++ M KY+ +W Y+ Y HP I+ C
Sbjct: 254 SIDRSEIDSAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYIRGC 397
Score = 68.0 bits (142), Expect(3) = 3e-039
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LWKLG+LPPGLL FY L LD WHVLGLGY
Sbjct: 143 DRALWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGY 247
Score = 57.9 bits (120), Expect(3) = 3e-039
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN+ DL EW+ K++TGIYH WQ N
Sbjct: 53 WAYGMNIFDLREWKKKDITGIYHKWQNLN 139
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 76.2 bits (160), Expect(3) = 7e-038
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++D + I AV+HYNGNMKPWL++ M KY+ +W Y+ Y HP I+ C
Sbjct: 395 SIDRSEIDSAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYIRGC 538
Score = 68.0 bits (142), Expect(3) = 7e-038
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LWKLG+LPPGLL FY L LD WHVLGLGY
Sbjct: 284 DRALWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGY 388
Score = 56.1 bits (116), Expect(3) = 7e-038
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQ 767
WA+GMN+ DL EW+ K++TGIYH WQ
Sbjct: 59 WAYGMNIFDLREWKKKDITGIYHKWQ 136
>gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 591
Score = 78.0 bits (164), Expect(3) = 2e-035
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -2 / +3
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
T++ + I AV+HYNGNMKPWL+I M KY+ +W Y++Y HP I C
Sbjct: 183 TIERSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYINYEHPYIHGC 326
Score = 65.2 bits (136), Expect(3) = 2e-035
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2 / +3
Query: 746 LWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
LWKLG+LPPGLL FY L LD WHVLGLGY
Sbjct: 81 LWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGY 176
Score = 45.5 bits (93), Expect(3) = 2e-035
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = -3 / +3
Query: 820 DLVEWRNKNVTGIYHYWQERNVIILYGSLG 731
DL EW+NK++TGIYH WQ N L LG
Sbjct: 6 DLEEWKNKDITGIYHKWQNMNENRLLWKLG 95
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 71.2 bits (149), Expect(3) = 3e-034
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +++ W YVDY I+QC
Sbjct: 392 SISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 535
Score = 63.8 bits (133), Expect(3) = 3e-034
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ FY + L+ WHVLGLGY
Sbjct: 281 NRTLWKLGTLPPGLITFYSTTKPLERSWHVLGLGY 385
Score = 49.6 bits (102), Expect(3) = 3e-034
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3 / +2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN DL WR + T YHYWQ +N
Sbjct: 191 WAYGMNFFDLDSWRREKCTEQYHYWQNQN 277
>gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_F12_A002 5', mRNA sequence
Length = 692
Score = 71.2 bits (149), Expect(3) = 8e-033
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = -2 / -1
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +++ W YVDY I+QC
Sbjct: 458 SISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 315
Score = 64.3 bits (134), Expect(3) = 8e-033
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / -1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ FY + L+ WHVLGLGY
Sbjct: 569 NRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGY 465
Score = 44.6 bits (91), Expect(3) = 8e-033
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3 / -1
Query: 841 AFGMNVLDLVEWRNKNVTGIYHYWQERN 758
A+GMN DL WR + T YHYWQ +N
Sbjct: 656 AYGMNFFDLDSWRREKCTEQYHYWQNQN 573
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 71.2 bits (149), Expect(3) = 1e-031
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = -2 / +1
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
++ + I+ AV+H+NGNMKPWL IGM +++ W YVDY I+QC
Sbjct: 199 SISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQC 342
Score = 60.2 bits (125), Expect(3) = 1e-031
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2 / +1
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LP GL+ FY + L+ WHVLGLGY
Sbjct: 88 NRTLWKLGTLPXGLITFYSTTKPLEKSWHVLGLGY 192
Score = 44.6 bits (91), Expect(3) = 1e-031
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 841 AFGMNVLDLVEWRNKNVTGIYHYWQERN 758
A+GMN DL WR + T YHYWQ +N
Sbjct: 1 AYGMNFFDLDSWRREKCTEQYHYWQNQN 84
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 64.3 bits (134), Expect(3) = 7e-030
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2 / +3
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
+ TLWKLG+LPPGL+ FY + L+ WHVLGLGY
Sbjct: 384 NRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGY 488
Score = 56.1 bits (116), Expect(3) = 7e-030
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = -2 / +3
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNY 537
++ + I+ AV+H+NGNMKPWL IGM +++ W Y
Sbjct: 495 SISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKY 605
Score = 49.6 bits (102), Expect(3) = 7e-030
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3 / +3
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQERN 758
WA+GMN DL WR + T YHYWQ +N
Sbjct: 294 WAYGMNFFDLDSWRREKCTEQYHYWQNQN 380
>gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 596
Score = 73.0 bits (153), Expect(3) = 3e-027
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = -2 / +2
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQCF 501
VD+A I AV+HYNGN KPWL + + KYK++W YVD + +Q C+
Sbjct: 146 VDIAEIDNAAVVHYNGNYKPWLDLAISKYKTYWSKYVDVDNSHVQHCY 289
Score = 63.4 bits (132), Expect(3) = 3e-027
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = -2 / +2
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D LWKLG+LPPGL+ FY L L+ WHVLGLGY
Sbjct: 32 DRKLWKLGTLPPGLITFYNLTYPLNRTWHVLGLGY 136
Score = 24.9 bits (48), Expect(3) = 3e-027
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / +2
Query: 784 IYHYWQERN 758
IYHYWQ+ N
Sbjct: 2 IYHYWQDLN 28
>gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 612
Score = 78.0 bits (164), Expect(2) = 3e-027
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -2 / +2
Query: 647 TVDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
T++ + I AV+HYNGNMKPWL+I M KY+ +W Y++Y HP I C
Sbjct: 179 TIERSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYINYEHPYIHGC 322
Score = 65.2 bits (136), Expect(2) = 3e-027
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -2 / +2
Query: 746 LWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
LWKLG+LPPGLL FY L LD WHVLGLGY
Sbjct: 77 LWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGY 172
>gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 64.3 bits (134), Expect(3) = 6e-026
Identities = 24/45 (53%), Positives = 29/45 (64%)
Frame = -2 / +2
Query: 785 HISLLAGAQCDHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
H L + TLWK G+LPP L+AF G V +DP WH+LGLGY
Sbjct: 269 HFWLKENLKSGLTLWKFGTLPPALIAFRGHVHGIDPSWHLLGLGY 403
Score = 59.7 bits (124), Expect(3) = 6e-026
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -2 / +2
Query: 641 DLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
D+ +++ AV+HYNG KPWL I + + FW +V+YS ++ C
Sbjct: 416 DIESVRRAAVIHYNGQCKPWLDIAFKNLQPFWTKHVNYSXDFVRNC 553
Score = 32.7 bits (65), Expect(3) = 6e-026
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -2 / +1
Query: 845 LGIWYERA*SG*MEEQECDRHISLL 771
LGIWYE *SG +EE + HIS L
Sbjct: 202 LGIWYEYI*SGSLEEDKH*GHISFL 276
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 75.8 bits (159), Expect(2) = 1e-024
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = -2 / +3
Query: 644 VDLATIKEGAVLHYNGNMKPWLKIGMEKYKSFWDNYVDYSHPLIQQC 504
V+ I+ AV+HYNGNMKPWL+IG+ KY+S+W Y+DY +++C
Sbjct: 132 VNSRDIERAAVIHYNGNMKPWLEIGLPKYRSYWSKYLDYDQSFLREC 272
Score = 58.8 bits (122), Expect(2) = 1e-024
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -2 / +3
Query: 755 DHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGY 651
D +LWKLG+LPPGL+ F+ L WHVLGLGY
Sbjct: 18 DRSLWKLGTLPPGLITFWNKTFPLSRSWHVLGLGY 122
>gb|CW451706.1|CW451706 fsbb001f191o09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191o09, DNA
sequence
Length = 599
Score = 84.0 bits (177), Expect(2) = 1e-021
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = -2 / -3
Query: 746 LWKLGSLPPGLLAFYGLVEALDPKWHVLGLGYTTVDLATIKEGAVLHYNGNMKPWLKIGM 567
LW++ SLPP L+A G V+A++P+W++ GLG+ ++ AVLH++G KPWL++
Sbjct: 300 LWQMASLPPALIAVDGRVQAIEPQWNLPGLGWRVPHPDLVRSSAVLHFSGPRKPWLEVAF 121
Query: 566 EKYKSFWDNYVDYSHPLIQQC 504
+ + W +++ S +Q C
Sbjct: 120 PELRQLWLAHLNASDSFLQGC 58
Score = 42.3 bits (86), Expect(2) = 1e-021
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3 / -2
Query: 844 WAFGMNVLDLVEWRNKNVTGIYHYWQER 761
W++G+N++DL WR NVT Y +W ++
Sbjct: 550 WSWGVNIVDLDAWRRTNVTETYQFWLQK 467
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,147,280,959
Number of Sequences: 832831
Number of extensions: 17417919
Number of successful extensions: 90023
Number of sequences better than 1.0e-020: 25
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 26970705814
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)