TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.3
(824 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/c... 343 2e-094
gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkal... 343 3e-094
gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated ... 325 1e-090
gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 ... 296 3e-079
gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infecte... 260 2e-068
gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorgh... 168 2e-064
gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkal... 219 4e-059
gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/c... 213 2e-054
gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Me... 197 2e-049
gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) So... 195 6e-049
gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle... 175 7e-043
gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated ... 131 2e-029
gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 ... 123 4e-027
>gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 5', mRNA sequence
Length = 660
Score = 343 bits (744), Expect(2) = 2e-094
Identities = 142/161 (88%), Positives = 143/161 (88%)
Frame = -3 / +3
Query: 588 RAGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSF 409
R GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWV SF
Sbjct: 60 REGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSF 239
Query: 408 ITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYI 229
ITLFELTFAPIIEWLPFWSYAKLFFNC LVLPWFNG AYVYDHF RP FVNRQIVNIWY+
Sbjct: 240 ITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIWYV 419
Query: 228 XRNEKLGKSDDVXXAAERYIEQNXXXAFXXLISKSTXXSXS 106
RNEKLGKSDDV AAERYIEQN AF LISKST S S
Sbjct: 420 PRNEKLGKSDDVLSAAERYIEQNGPEAFEKLISKSTKSSKS 542
Score = 285 bits (616), Expect = 8e-076
Identities = 127/151 (84%), Positives = 129/151 (85%)
Frame = +2 / -3
Query: 107 DXXXXVDLLMSXSNAXXXFCSIYLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS 286
D VDLLMS SNA FCSIYLSAA TSSDLPSFSFL YHM TIWRFTN+GR KWS
Sbjct: 541 DFEDFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS 362
Query: 287 *T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFV 466
*T*A PLNQGKT QLKN+FAYDQNGSHSIIGAKVSSNKVINE TQ*VSHC SSTGF V
Sbjct: 361 *T*AAPLNQGKTNQQLKNNFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLV 182
Query: 467 SIALTEAYRG*ASDMSGPARTSKLLASTLRK 559
SIALTEAYRG ASDMSGPARTSKLLASTLRK
Sbjct: 181 SIALTEAYRGYASDMSGPARTSKLLASTLRK 89
Score = 269 bits (582), Expect = 4e-071
Identities = 118/153 (77%), Positives = 121/153 (79%)
Frame = +1 / -2
Query: 124 RLADELXKCXXXVLFNISLCSXXNIIRFT*LLISXNIPYVXYLAVHKHWPXKMVVNIGXT 303
RLADEL KC +L NISLCS NIIRFT*LLI NIPYV YLAVHK WP KMVVNI T
Sbjct: 524 RLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNISST 345
Query: 304 IEPRQDQXAVKEQLCIRPKWKPLDNWSKS*LKQSDK*VXHPVSEPLLIIYRIFCLYXXXX 483
IEPR DQ AVKEQLCI PKWKPLDNWSKS*LKQSDK*V HPVSEPLL+IYRIF LY
Sbjct: 344 IEPR*DQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNR 165
Query: 484 XXXXXXK*YEWPGKDIEVIGQHLEERSGPHLAP 582
K*YEWP DIEV+ QHLEERSGPHLAP
Sbjct: 164 SI*RICK*YEWPC*DIEVVSQHLEERSGPHLAP 66
Score = 265 bits (574), Expect = 5e-070
Identities = 125/154 (81%), Positives = 127/154 (82%)
Frame = +3 / -1
Query: 123 *TC**AXQMXXVXFVQYISLQLXXHHQIYLASHFXXYTICXLFGGSQTLAXXNGRKHRQX 302
*TC**A QM V F QYISLQL HHQIYLASH +TIC LFGGSQTLA NGRKH+Q
Sbjct: 525 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 346
Query: 303 H*TKARPXSS*RTALHTTKMEATR*LEQKLAQTK**MSXTPSK*ATADHLQDFLSL*L*Q 482
H*TK RP SS*RT LH TKMEATR*LEQKLAQTK**MS TPSK*ATA HLQDF SL L*Q
Sbjct: 345 H*TKVRPTSS*RTTLHMTKMEATR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*Q 166
Query: 483 KHIEDKQVI*VARQGHRSYWPAP*GKIRTPSCSL 584
KHIED QVI*VA GHRS PAP*GKIRTPSCSL
Sbjct: 165 KHIEDMQVI*VALLGHRSC*PAP*GKIRTPSCSL 64
Score = 159 bits (341), Expect(3) = 6e-067
Identities = 67/77 (87%), Positives = 70/77 (90%)
Frame = -2 / +2
Query: 589 KSREQDGVRIFPQGAGQ*LRCPCRATHITCLSSICFC*SYRDKKSCR*SAVAHLLGVXLI 410
+ REQDGVRIFPQGAG LRCP RATHITC+SSICFC*S RD+KSCR* AVAHLLGV LI
Sbjct: 59 QGREQDGVRIFPQGAG*QLRCPSRATHITCISSICFC*SNRDQKSCR*PAVAHLLGVVLI 238
Query: 409 YHFV*ANFCSNYRVASI 359
YHFV*ANFCSNYRVASI
Sbjct: 239 YHFV*ANFCSNYRVASI 289
Score = 112 bits (239), Expect(3) = 6e-067
Identities = 56/81 (69%), Positives = 61/81 (75%)
Frame = -1 / +1
Query: 350 MQSCSLTAXWSCLGSMVLPMFTTIXXGQCL*TAK*XTYGIXXEMRS*VNLMMXXXLQRDI 171
MQSCSLTA WS LGSMVL MFTTI GQ L*TAK* TYG+ MRS*VNLMM LQRDI
Sbjct: 298 MQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAK**TYGMFQGMRS*VNLMMFCQLQRDI 477
Query: 170 LNKTXXXHLXSSSASLRXXRS 108
L+K HL SSSASL+ ++
Sbjct: 478 LSKMDRKHLRSSSASLQSLQN 540
Score = 111 bits (237), Expect(2) = 4e-036
Identities = 48/62 (77%), Positives = 49/62 (79%)
Frame = -2 / +2
Query: 307 QWXCLCLRPFXXANVCEPPNSXHMVYXKK*EAR*I**CXXSCREIY*TKXTXXI*XAHQQ 128
QW CLCLRPF ANVCEPPNS HMV K+*EAR*I**C SCREIY* K T I* AHQQ
Sbjct: 341 QWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQ 520
Query: 127 VY 122
VY
Sbjct: 521 VY 526
Score = 63.8 bits (133), Expect(2) = 4e-036
Identities = 29/46 (63%), Positives = 30/46 (65%)
Frame = -1 / +1
Query: 584 QGARWGPDLSSRCWPITSMSLPGHSYHXXXXXXXXXXX*RQKIL*M 447
+GARWGPDLSSRCW TSMS GHSYH *R KIL*M
Sbjct: 64 KGARWGPDLSSRCWLTTSMS*QGHSYHLHILYMLLLEQ*RPKIL*M 201
Score = 24.4 bits (47), Expect(2) = 2e-094
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1 / +2
Query: 638 AAASGQGESDSSVLLQEEQG 579
AA SGQ S S +L +EEQG
Sbjct: 5 AAPSGQR*SSSVLLEEEEQG 64
Score = 23.5 bits (45), Expect(3) = 6e-067
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2 / +3
Query: 631 HQGRERAIVLFYCRKSRE 578
HQG + ++ ++ +KSRE
Sbjct: 12 HQGSDSQVLFYWRKKSRE 65
>gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_D12_A002 5', mRNA sequence
Length = 760
Score = 343 bits (744), Expect(2) = 3e-094
Identities = 142/161 (88%), Positives = 143/161 (88%)
Frame = -3 / +1
Query: 588 RAGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSF 409
R GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWV SF
Sbjct: 52 REGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSF 231
Query: 408 ITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYI 229
ITLFELTFAPIIEWLPFWSYAKLFFNC LVLPWFNG AYVYDHF RP FVNRQIVNIWY+
Sbjct: 232 ITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIWYV 411
Query: 228 XRNEKLGKSDDVXXAAERYIEQNXXXAFXXLISKSTXXSXS 106
RNEKLGKSDDV AAERYIEQN AF LISKST S S
Sbjct: 412 PRNEKLGKSDDVLSAAERYIEQNGPEAFEKLISKSTKSSKS 534
Score = 285 bits (616), Expect = 8e-076
Identities = 127/151 (84%), Positives = 129/151 (85%)
Frame = +2 / -3
Query: 107 DXXXXVDLLMSXSNAXXXFCSIYLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS 286
D VDLLMS SNA FCSIYLSAA TSSDLPSFSFL YHM TIWRFTN+GR KWS
Sbjct: 533 DFEDFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS 354
Query: 287 *T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFV 466
*T*A PLNQGKT QLKN+FAYDQNGSHSIIGAKVSSNKVINE TQ*VSHC SSTGF V
Sbjct: 353 *T*AAPLNQGKTNQQLKNNFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLV 174
Query: 467 SIALTEAYRG*ASDMSGPARTSKLLASTLRK 559
SIALTEAYRG ASDMSGPARTSKLLASTLRK
Sbjct: 173 SIALTEAYRGYASDMSGPARTSKLLASTLRK 81
Score = 269 bits (582), Expect = 4e-071
Identities = 118/153 (77%), Positives = 121/153 (79%)
Frame = +1 / -2
Query: 124 RLADELXKCXXXVLFNISLCSXXNIIRFT*LLISXNIPYVXYLAVHKHWPXKMVVNIGXT 303
RLADEL KC +L NISLCS NIIRFT*LLI NIPYV YLAVHK WP KMVVNI T
Sbjct: 516 RLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNISST 337
Query: 304 IEPRQDQXAVKEQLCIRPKWKPLDNWSKS*LKQSDK*VXHPVSEPLLIIYRIFCLYXXXX 483
IEPR DQ AVKEQLCI PKWKPLDNWSKS*LKQSDK*V HPVSEPLL+IYRIF LY
Sbjct: 336 IEPR*DQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNR 157
Query: 484 XXXXXXK*YEWPGKDIEVIGQHLEERSGPHLAP 582
K*YEWP DIEV+ QHLEERSGPHLAP
Sbjct: 156 SI*RICK*YEWPC*DIEVVSQHLEERSGPHLAP 58
Score = 265 bits (574), Expect = 5e-070
Identities = 125/154 (81%), Positives = 127/154 (82%)
Frame = +3 / -1
Query: 123 *TC**AXQMXXVXFVQYISLQLXXHHQIYLASHFXXYTICXLFGGSQTLAXXNGRKHRQX 302
*TC**A QM V F QYISLQL HHQIYLASH +TIC LFGGSQTLA NGRKH+Q
Sbjct: 517 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 338
Query: 303 H*TKARPXSS*RTALHTTKMEATR*LEQKLAQTK**MSXTPSK*ATADHLQDFLSL*L*Q 482
H*TK RP SS*RT LH TKMEATR*LEQKLAQTK**MS TPSK*ATA HLQDF SL L*Q
Sbjct: 337 H*TKVRPTSS*RTTLHMTKMEATR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*Q 158
Query: 483 KHIEDKQVI*VARQGHRSYWPAP*GKIRTPSCSL 584
KHIED QVI*VA GHRS PAP*GKIRTPSCSL
Sbjct: 157 KHIEDMQVI*VALLGHRSC*PAP*GKIRTPSCSL 56
Score = 159 bits (341), Expect(2) = 2e-065
Identities = 67/77 (87%), Positives = 70/77 (90%)
Frame = -2 / +3
Query: 589 KSREQDGVRIFPQGAGQ*LRCPCRATHITCLSSICFC*SYRDKKSCR*SAVAHLLGVXLI 410
+ REQDGVRIFPQGAG LRCP RATHITC+SSICFC*S RD+KSCR* AVAHLLGV LI
Sbjct: 51 QGREQDGVRIFPQGAG*QLRCPSRATHITCISSICFC*SNRDQKSCR*PAVAHLLGVVLI 230
Query: 409 YHFV*ANFCSNYRVASI 359
YHFV*ANFCSNYRVASI
Sbjct: 231 YHFV*ANFCSNYRVASI 281
Score = 112 bits (239), Expect(2) = 2e-065
Identities = 56/81 (69%), Positives = 61/81 (75%)
Frame = -1 / +2
Query: 350 MQSCSLTAXWSCLGSMVLPMFTTIXXGQCL*TAK*XTYGIXXEMRS*VNLMMXXXLQRDI 171
MQSCSLTA WS LGSMVL MFTTI GQ L*TAK* TYG+ MRS*VNLMM LQRDI
Sbjct: 290 MQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAK**TYGMFQGMRS*VNLMMFCQLQRDI 469
Query: 170 LNKTXXXHLXSSSASLRXXRS 108
L+K HL SSSASL+ ++
Sbjct: 470 LSKMDRKHLRSSSASLQSLQN 532
Score = 111 bits (237), Expect(3) = 9e-037
Identities = 48/62 (77%), Positives = 49/62 (79%)
Frame = -2 / +3
Query: 307 QWXCLCLRPFXXANVCEPPNSXHMVYXKK*EAR*I**CXXSCREIY*TKXTXXI*XAHQQ 128
QW CLCLRPF ANVCEPPNS HMV K+*EAR*I**C SCREIY* K T I* AHQQ
Sbjct: 333 QWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQ 512
Query: 127 VY 122
VY
Sbjct: 513 VY 518
Score = 63.8 bits (133), Expect(3) = 9e-037
Identities = 29/46 (63%), Positives = 30/46 (65%)
Frame = -1 / +2
Query: 584 QGARWGPDLSSRCWPITSMSLPGHSYHXXXXXXXXXXX*RQKIL*M 447
+GARWGPDLSSRCW TSMS GHSYH *R KIL*M
Sbjct: 56 KGARWGPDLSSRCWLTTSMS*QGHSYHLHILYMLLLEQ*RPKIL*M 193
Score = 23.5 bits (45), Expect(2) = 3e-094
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 631 HQGRERAIVLFYCRKSRE 578
HQG + ++ ++ +KSRE
Sbjct: 4 HQGSDSQVLFYWRKKSRE 57
Score = 21.7 bits (41), Expect(3) = 9e-037
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +3
Query: 632 ASGQGESDSSVLLQEEQG 579
+SGQ S S +L +EEQG
Sbjct: 3 SSGQR*SSSVLLEEEEQG 56
>gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 5', mRNA sequence
Length = 580
Score = 325 bits (704), Expect(3) = 1e-090
Identities = 132/148 (89%), Positives = 134/148 (90%)
Frame = -3 / +1
Query: 588 RAGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSF 409
R GS+MGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWV SF
Sbjct: 136 REGSEMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSF 315
Query: 408 ITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYI 229
ITLFELTFAPIIEWLPFWSYAKLFFNC LVLPWFNG AYVYDHF RP FVNR IVNIWY+
Sbjct: 316 ITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRXIVNIWYV 495
Query: 228 XRNEKLGKSDDVXXAAERYIEQNXXXAF 145
RNEKLGKSDDV AAERYIEQN AF
Sbjct: 496 PRNEKLGKSDDVLSAAERYIEQNGPEAF 579
Score = 264 bits (571), Expect(2) = 3e-070
Identities = 118/138 (85%), Positives = 120/138 (86%)
Frame = +2 / -3
Query: 146 NAXXXFCSIYLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS*T*AXPLNQGKTX 325
NA FCSIYLSAA TSSDLPSFSFL YHM TI RFTN+GR KWS*T*A PLNQGKT
Sbjct: 578 NASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIXRFTNVGRTKWS*T*AAPLNQGKTN 399
Query: 326 XQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVSIALTEAYRG*AS 505
QLKN+FAYDQNGSHSIIGAKVSSNKVINE TQ*VSHC SSTGF VSIALTEAYRG AS
Sbjct: 398 QQLKNNFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLVSIALTEAYRGYAS 219
Query: 506 DMSGPARTSKLLASTLRK 559
DMSGPARTSKLLASTLRK
Sbjct: 218 DMSGPARTSKLLASTLRK 165
Score = 254 bits (550), Expect = 1e-066
Identities = 111/146 (76%), Positives = 114/146 (78%)
Frame = +1 / -2
Query: 145 KCXXXVLFNISLCSXXNIIRFT*LLISXNIPYVXYLAVHKHWPXKMVVNIGXTIEPRQDQ 324
KC +L NISLCS NIIRFT*LLI NIPYV Y AVHK WP KMVVNI TIEPR DQ
Sbjct: 579 KCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYXAVHKRWPHKMVVNISSTIEPR*DQ 400
Query: 325 XAVKEQLCIRPKWKPLDNWSKS*LKQSDK*VXHPVSEPLLIIYRIFCLYXXXXXXXXXXK 504
AVKEQLCI PKWKPLDNWSKS*LKQSDK*V HPVSEPLL+IYRIF LY K
Sbjct: 399 PAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNRSI*RICK 220
Query: 505 *YEWPGKDIEVIGQHLEERSGPHLAP 582
*YEWP DIEV+ QHLEERSGPHLAP
Sbjct: 219 *YEWPC*DIEVVSQHLEERSGPHLAP 142
Score = 247 bits (534), Expect = 2e-064
Identities = 117/147 (79%), Positives = 119/147 (80%)
Frame = +3 / -1
Query: 144 QMXXVXFVQYISLQLXXHHQIYLASHFXXYTICXLFGGSQTLAXXNGRKHRQXH*TKARP 323
QM V F QYISLQL HHQIYLASH +TIC L GGSQTLA NGRKH+Q H*TK RP
Sbjct: 580 QMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLXGGSQTLAAQNGRKHKQHH*TKVRP 401
Query: 324 XSS*RTALHTTKMEATR*LEQKLAQTK**MSXTPSK*ATADHLQDFLSL*L*QKHIEDKQ 503
SS*RT LH TKMEATR*LEQKLAQTK**MS TPSK*ATA HLQDF SL L*QKHIED Q
Sbjct: 400 TSS*RTTLHMTKMEATR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*QKHIEDMQ 221
Query: 504 VI*VARQGHRSYWPAP*GKIRTPSCSL 584
VI*VA GHRS PAP*GKIRTPS SL
Sbjct: 220 VI*VALLGHRSC*PAP*GKIRTPSRSL 140
Score = 157 bits (337), Expect(4) = 9e-064
Identities = 66/77 (85%), Positives = 70/77 (90%)
Frame = -2 / +3
Query: 589 KSREQDGVRIFPQGAGQ*LRCPCRATHITCLSSICFC*SYRDKKSCR*SAVAHLLGVXLI 410
+ RE+DGVRIFPQGAG LRCP RATHITC+SSICFC*S RD+KSCR* AVAHLLGV LI
Sbjct: 135 QGRERDGVRIFPQGAG*QLRCPSRATHITCISSICFC*SNRDQKSCR*PAVAHLLGVVLI 314
Query: 409 YHFV*ANFCSNYRVASI 359
YHFV*ANFCSNYRVASI
Sbjct: 315 YHFV*ANFCSNYRVASI 365
Score = 98.2 bits (208), Expect(4) = 9e-064
Identities = 49/69 (71%), Positives = 51/69 (73%)
Frame = -1 / +2
Query: 350 MQSCSLTAXWSCLGSMVLPMFTTIXXGQCL*TAK*XTYGIXXEMRS*VNLMMXXXLQRDI 171
MQSCSLTA WS LGSMVL MFTTI GQ L*TA * TYG+ MRS*VNLMM LQRDI
Sbjct: 374 MQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAX**TYGMFQGMRS*VNLMMFCQLQRDI 553
Query: 170 LNKTXXXHL 144
L+K HL
Sbjct: 554 LSKMDRKHL 580
Score = 96.4 bits (204), Expect(2) = 1e-031
Identities = 41/54 (75%), Positives = 42/54 (77%)
Frame = -2 / +3
Query: 307 QWXCLCLRPFXXANVCEPPNSXHMVYXKK*EAR*I**CXXSCREIY*TKXTXXI 146
QW CLCLRPF ANVCEPPNS HMV K+*EAR*I**C SCREIY* K T I
Sbjct: 417 QWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI 578
Score = 63.8 bits (133), Expect(2) = 1e-031
Identities = 29/46 (63%), Positives = 30/46 (65%)
Frame = -1 / +2
Query: 584 QGARWGPDLSSRCWPITSMSLPGHSYHXXXXXXXXXXX*RQKIL*M 447
+GARWGPDLSSRCW TSMS GHSYH *R KIL*M
Sbjct: 140 KGARWGPDLSSRCWLTTSMS*QGHSYHLHILYMLLLEQ*RPKIL*M 277
Score = 24.9 bits (48), Expect(3) = 1e-090
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1 / +3
Query: 656 RFQVLAAAASGQGESDSSVLLQEEQG 579
R + AA SGQ S S +L +EEQG
Sbjct: 63 RASKVLAAPSGQR*SSSVLLEEEEQG 140
Score = 24.4 bits (47), Expect(3) = 1e-090
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3 / +3
Query: 717 QAAAPNDWLAARENPS 670
QAA PN WLA E+ S
Sbjct: 12 QAAPPNGWLARIESVS 59
Score = 23.5 bits (45), Expect(4) = 9e-064
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 631 HQGRERAIVLFYCRKSRE 578
HQG + ++ ++ +KSRE
Sbjct: 88 HQGSDSQVLFYWRKKSRE 141
Score = 23.5 bits (45), Expect(4) = 9e-064
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / +2
Query: 715 GSSPQRLARRSR 680
GS PQRLAR +R
Sbjct: 14 GSPPQRLARENR 49
Score = 23.1 bits (44), Expect(2) = 3e-070
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / -2
Query: 678 SRERRASRWGLLP 716
+R RASRWG LP
Sbjct: 51 TRFSRASRWGGLP 13
>gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 296 bits (641), Expect = 3e-079
Identities = 121/139 (87%), Positives = 122/139 (87%)
Frame = -3 / +2
Query: 522 AGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAK 343
AGPLISLAYPLYASVRAIETKNPVDDQQWLTYWV SFITLFELTFAPIIEWLPFWSYAK
Sbjct: 8 AGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYAK 187
Query: 342 LFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYIXRNEKLGKSDDVXXAAERYIEQ 163
LFFNC LVLPWFNG AYVYDHF RP FVNRQIVNIWY+ RNEKLGKSDDV AAERYIEQ
Sbjct: 188 LFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKSDDVLSAAERYIEQ 367
Query: 162 NXXXAFXXLISKSTXXSXS 106
N AF LISKST S S
Sbjct: 368 NGPEAFEKLISKSTKSSKS 424
Score = 260 bits (562), Expect = 2e-068
Identities = 115/139 (82%), Positives = 117/139 (84%)
Frame = +2 / -2
Query: 107 DXXXXVDLLMSXSNAXXXFCSIYLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS 286
D VDLLMS SNA FCSIYLSAA TSSDLPSFSFL YHM TIWRFTN+GR KWS
Sbjct: 423 DFEDFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS 244
Query: 287 *T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFV 466
*T*A PLNQGKT QLKN+FAYDQNGSHSIIGAKVSSNKVINE TQ*VSHC SSTGF V
Sbjct: 243 *T*AAPLNQGKTNQQLKNNFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLV 64
Query: 467 SIALTEAYRG*ASDMSGPA 523
SIALTEAYRG ASDMSGPA
Sbjct: 63 SIALTEAYRGYASDMSGPA 7
Score = 229 bits (495), Expect = 4e-059
Identities = 101/132 (76%), Positives = 103/132 (78%)
Frame = +1 / -1
Query: 124 RLADELXKCXXXVLFNISLCSXXNIIRFT*LLISXNIPYVXYLAVHKHWPXKMVVNIGXT 303
RLADEL KC +L NISLCS NIIRFT*LLI NIPYV YLAVHK WP KMVVNI T
Sbjct: 406 RLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNISST 227
Query: 304 IEPRQDQXAVKEQLCIRPKWKPLDNWSKS*LKQSDK*VXHPVSEPLLIIYRIFCLYXXXX 483
IEPR DQ AVKEQLCI PKWKPLDNWSKS*LKQSDK*V HPVSEPLL+IYRIF LY
Sbjct: 226 IEPR*DQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNR 47
Query: 484 XXXXXXK*YEWP 519
K*YEWP
Sbjct: 46 SI*RICK*YEWP 11
Score = 226 bits (489), Expect = 2e-058
Identities = 107/132 (81%), Positives = 109/132 (82%)
Frame = +3 / -3
Query: 123 *TC**AXQMXXVXFVQYISLQLXXHHQIYLASHFXXYTICXLFGGSQTLAXXNGRKHRQX 302
*TC**A QM V F QYISLQL HHQIYLASH +TIC LFGGSQTLA NGRKH+Q
Sbjct: 407 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 228
Query: 303 H*TKARPXSS*RTALHTTKMEATR*LEQKLAQTK**MSXTPSK*ATADHLQDFLSL*L*Q 482
H*TK RP SS*RT LH TKMEATR*LEQKLAQTK**MS TPSK*ATA HLQDF SL L*Q
Sbjct: 227 H*TKVRPTSS*RTTLHMTKMEATR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*Q 48
Query: 483 KHIEDKQVI*VA 518
KHIED QVI*VA
Sbjct: 47 KHIEDMQVI*VA 12
Score = 117 bits (250), Expect(2) = 5e-053
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = -2 / +1
Query: 520 RATHITCLSSICFC*SYRDKKSCR*SAVAHLLGVXLIYHFV*ANFCSNYRVASI 359
RATHITC+SSICFC*S RD+KSCR* AVAHLLGV LIYHFV*ANFCSNYRVASI
Sbjct: 10 RATHITCISSICFC*SNRDQKSCR*PAVAHLLGVVLIYHFV*ANFCSNYRVASI 171
Score = 112 bits (239), Expect(2) = 5e-053
Identities = 56/81 (69%), Positives = 61/81 (75%)
Frame = -1 / +3
Query: 350 MQSCSLTAXWSCLGSMVLPMFTTIXXGQCL*TAK*XTYGIXXEMRS*VNLMMXXXLQRDI 171
MQSCSLTA WS LGSMVL MFTTI GQ L*TAK* TYG+ MRS*VNLMM LQRDI
Sbjct: 180 MQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAK**TYGMFQGMRS*VNLMMFCQLQRDI 359
Query: 170 LNKTXXXHLXSSSASLRXXRS 108
L+K HL SSSASL+ ++
Sbjct: 360 LSKMDRKHLRSSSASLQSLQN 422
Score = 111 bits (237), Expect(2) = 9e-024
Identities = 48/62 (77%), Positives = 49/62 (79%)
Frame = -2 / +1
Query: 307 QWXCLCLRPFXXANVCEPPNSXHMVYXKK*EAR*I**CXXSCREIY*TKXTXXI*XAHQQ 128
QW CLCLRPF ANVCEPPNS HMV K+*EAR*I**C SCREIY* K T I* AHQQ
Sbjct: 223 QWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQ 402
Query: 127 VY 122
VY
Sbjct: 403 VY 408
Score = 21.7 bits (41), Expect(2) = 9e-024
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1 / +3
Query: 518 GHSYHXXXXXXXXXXX*RQKIL*M 447
GHSYH *R KIL*M
Sbjct: 12 GHSYHLHILYMLLLEQ*RPKIL*M 83
>gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 456
Score = 260 bits (562), Expect = 2e-068
Identities = 105/119 (88%), Positives = 107/119 (89%)
Frame = -3 / +1
Query: 588 RAGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSF 409
R GSKMGSGSFLKVLANNFDVLA PLISLAYPLYASVRAIETKNPVDDQQWLTYWV SF
Sbjct: 100 REGSKMGSGSFLKVLANNFDVLARPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSF 279
Query: 408 ITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWY 232
ITLFELTFAPIIEWLPFW+YAKLFFNC L LPW NG AYVY+HF RP FVNRQI NI Y
Sbjct: 280 ITLFELTFAPIIEWLPFWTYAKLFFNCWLALPWINGAAYVYEHFVRPTFVNRQIENISY 456
Score = 205 bits (443), Expect = 5e-052
Identities = 88/117 (75%), Positives = 92/117 (78%)
Frame = +1 / -1
Query: 232 IPYVXYLAVHKHWPXKMVVNIGXTIEPRQDQXAVKEQLCIRPKWKPLDNWSKS*LKQSDK 411
I YV YLAVHK WP KM+VNI TI+PR Q AVKEQLCI PKWKPLDNWSKS*LKQSDK
Sbjct: 456 IRYVLYLAVHKRWPHKMLVNISSTIDPR*GQPAVKEQLCICPKWKPLDNWSKS*LKQSDK 277
Query: 412 *VXHPVSEPLLIIYRIFCLYXXXXXXXXXXK*YEWPGKDIEVIGQHLEERSGPHLAP 582
*V HPVSEPLL+IYRIF LY K*YEWP DIEV+ QHLEERSGPHLAP
Sbjct: 276 *VQHPVSEPLLVIYRIFGLYCSNRSI*RICK*YEWPC*DIEVVSQHLEERSGPHLAP 106
Score = 204 bits (440), Expect = 1e-051
Identities = 96/117 (82%), Positives = 99/117 (84%)
Frame = +3 / -3
Query: 234 TICXLFGGSQTLAXXNGRKHRQXH*TKARPXSS*RTALHTTKMEATR*LEQKLAQTK**M 413
TIC LFGGSQTLA N RKH+Q H*+K RP SS*RT LH +KMEATR*LEQKLAQTK**M
Sbjct: 454 TICSLFGGSQTLAAQNARKHKQHH*SKVRPTSS*RTTLHMSKMEATR*LEQKLAQTK**M 275
Query: 414 SXTPSK*ATADHLQDFLSL*L*QKHIEDKQVI*VARQGHRSYWPAP*GKIRTPSCSL 584
S TPSK*ATA HLQDF SL L*QKHIED QVI*VA GHRS PAP*GKIRTPSCSL
Sbjct: 274 STTPSK*ATAGHLQDFWSLLL*QKHIEDMQVI*VAVLGHRSC*PAP*GKIRTPSCSL 104
Score = 196 bits (423), Expect = 3e-049
Identities = 90/109 (82%), Positives = 93/109 (85%)
Frame = +2 / -2
Query: 233 YHMXTIWRFTNIGRXKWS*T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVIN 412
Y M +IWRFTN+GR K S*T*A PL QGK QLKN+FAY QNGSHSIIGAKVSSNKVIN
Sbjct: 455 YDMFSIWRFTNVGRTKCS*T*AAPLIQGKANQQLKNNFAYVQNGSHSIIGAKVSSNKVIN 276
Query: 413 EXXTQ*VSHC*SSTGFFVSIALTEAYRG*ASDMSGPARTSKLLASTLRK 559
E TQ*VSHC SSTGF VSIALTEAYRG ASDMSG ARTSKLLASTLRK
Sbjct: 275 EYNTQ*VSHCWSSTGFLVSIALTEAYRGYASDMSGRARTSKLLASTLRK 129
Score = 156 bits (335), Expect(2) = 2e-049
Identities = 66/77 (85%), Positives = 69/77 (89%)
Frame = -2 / +3
Query: 589 KSREQDGVRIFPQGAGQ*LRCPCRATHITCLSSICFC*SYRDKKSCR*SAVAHLLGVXLI 410
+ REQDGVRIFPQGAG LRCP ATHITC+SSICFC*S RD+KSCR* AVAHLLGV LI
Sbjct: 99 QGREQDGVRIFPQGAG*QLRCPSTATHITCISSICFC*SNRDQKSCR*PAVAHLLGVVLI 278
Query: 409 YHFV*ANFCSNYRVASI 359
YHFV*ANFCSNYRVASI
Sbjct: 279 YHFV*ANFCSNYRVASI 329
Score = 61.6 bits (128), Expect(2) = 2e-049
Identities = 29/38 (76%), Positives = 30/38 (78%)
Frame = -1 / +2
Query: 350 MQSCSLTAXWSCLGSMVLPMFTTIXXGQCL*TAK*XTY 237
MQSCSLTA W LGSMVL MFT+I GQ L*TAK* TY
Sbjct: 338 MQSCSLTAGWPYLGSMVLLMFTSILCGQRL*TAK*RTY 451
>gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152669, DNA
sequence
Length = 690
Score = 168 bits (361), Expect(2) = 2e-064
Identities = 67/80 (83%), Positives = 68/80 (85%)
Frame = -3 / +3
Query: 366 LPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYIXRNEKLGKSDDVXX 187
LPFWSYAKLFFNC LVLPWFNG AYVYDHF RP FVNRQIVNIWY+ RNEKLGKSDDV
Sbjct: 360 LPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKSDDVLS 539
Query: 186 AAERYIEQNXXXAFXXLISK 127
AAERYIEQN AF LISK
Sbjct: 540 AAERYIEQNGPEAFEKLISK 599
Score = 154 bits (330), Expect(2) = 3e-054
Identities = 65/80 (81%), Positives = 67/80 (83%)
Frame = +2 / -3
Query: 128 LLMSXSNAXXXFCSIYLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS*T*AXPL 307
LLMS SNA FCSIYLSAA TSSDLPSFSFL YHM TIWRFTN+GR KWS*T*A PL
Sbjct: 598 LLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS*T*AAPL 419
Query: 308 NQGKTXXQLKNSFAYDQNGS 367
NQGKT QLKN+FAYDQNGS
Sbjct: 418 NQGKTNQQLKNNFAYDQNGS 359
Score = 146 bits (313), Expect(2) = 4e-051
Identities = 63/81 (77%), Positives = 64/81 (79%)
Frame = +1 / -2
Query: 127 LADELXKCXXXVLFNISLCSXXNIIRFT*LLISXNIPYVXYLAVHKHWPXKMVVNIGXTI 306
LADEL KC +L NISLCS NIIRFT*LLI NIPYV YLAVHK WP KMVVNI TI
Sbjct: 599 LADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNISSTI 420
Query: 307 EPRQDQXAVKEQLCIRPKWKP 369
EPR DQ AVKEQLCI PKWKP
Sbjct: 419 EPR*DQPAVKEQLCI*PKWKP 357
Score = 138 bits (296), Expect(2) = 2e-047
Identities = 60/82 (73%), Positives = 63/82 (76%)
Frame = +3 / -1
Query: 129 C**AXQMXXVXFVQYISLQLXXHHQIYLASHFXXYTICXLFGGSQTLAXXNGRKHRQXH* 308
C**A QM V F QYISLQL HHQIYLASH +TIC LFGGSQTLA NGRKH+Q H*
Sbjct: 597 C**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQHH* 418
Query: 309 TKARPXSS*RTALHTTKMEATR 374
TK RP SS*RT LH TKMEA +
Sbjct: 417 TKVRPTSS*RTTLHMTKMEACK 352
Score = 107 bits (229), Expect(2) = 1e-042
Identities = 54/74 (72%), Positives = 56/74 (75%)
Frame = -1 / +1
Query: 350 MQSCSLTAXWSCLGSMVLPMFTTIXXGQCL*TAK*XTYGIXXEMRS*VNLMMXXXLQRDI 171
MQSCSLTA WS LGSMVL MFTTI GQ L*TAK* TYG+ MRS*VNLMM LQRDI
Sbjct: 376 MQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAK**TYGMFQGMRS*VNLMMFCQLQRDI 555
Query: 170 LNKTXXXHLXSSSA 129
L+K HL SSSA
Sbjct: 556 LSKMDRKHLRSSSA 597
Score = 106 bits (226), Expect = 5e-022
Identities = 46/60 (76%), Positives = 47/60 (78%)
Frame = -2 / +2
Query: 307 QWXCLCLRPFXXANVCEPPNSXHMVYXKK*EAR*I**CXXSCREIY*TKXTXXI*XAHQQ 128
QW CLCLRPF ANVCEPPNS HMV K+*EAR*I**C SCREIY* K T I* AHQQ
Sbjct: 419 QWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQ 598
Score = 101 bits (216), Expect(2) = 2e-064
Identities = 43/66 (65%), Positives = 49/66 (74%)
Frame = -3 / +3
Query: 564 GSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTF 385
G FL +L ++ ++ + YASVRAIETKNPVDDQQWLTYWV SFITLFELTF
Sbjct: 30 GFFL*MLCEHYCYISNHFLFWHICRYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTF 209
Query: 384 APIIEW 367
APIIEW
Sbjct: 210 APIIEW 227
Score = 89.5 bits (189), Expect(2) = 1e-042
Identities = 37/43 (86%), Positives = 39/43 (90%)
Frame = -2 / +2
Query: 490 ICFC*SYRDKKSCR*SAVAHLLGVXLIYHFV*ANFCSNYRVAS 362
ICFC*S RD+KSCR* AVAHLLGV LIYHFV*ANFCSNYRV +
Sbjct: 104 ICFC*SNRDQKSCR*PAVAHLLGVVLIYHFV*ANFCSNYRVVN 232
Score = 82.2 bits (173), Expect(2) = 3e-054
Identities = 37/41 (90%), Positives = 37/41 (90%)
Frame = +2 / -3
Query: 368 HSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVSIALTEAY 490
HSIIGAKVSSNKVINE TQ*VSHC SSTGF VSIALTEAY
Sbjct: 226 HSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLVSIALTEAY 104
Score = 77.1 bits (162), Expect(2) = 4e-051
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = +1 / -2
Query: 352 RPKWKPLDNWSKS*LKQSDK*VXHPVSEPLLIIYRIFCLY 471
R + PLDNWSKS*LKQSDK*V HPVSEPLL+IYRIF LY
Sbjct: 242 RKCYLPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLY 123
Score = 74.4 bits (156), Expect(2) = 2e-047
Identities = 37/41 (90%), Positives = 37/41 (90%)
Frame = +3 / -1
Query: 369 TR*LEQKLAQTK**MSXTPSK*ATADHLQDFLSL*L*QKHI 491
TR*LEQKLAQTK**MS TPSK*ATA HLQDF SL L*QKHI
Sbjct: 225 TR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*QKHI 103
>gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_G11_A002 5', mRNA sequence
Length = 778
Score = 219 bits (472), Expect(2) = 4e-059
Identities = 87/132 (65%), Positives = 102/132 (77%)
Frame = -3 / +3
Query: 591 GRAGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXS 412
G + MGSGS LKV+ANNFDVLAGPL++LAYPLYASV+AIETK+PVDDQQWLTYWV
Sbjct: 192 GIPATAMGSGSLLKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYP 371
Query: 411 FITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWY 232
ITLFE TFA II+WLPFW KL F C LVLP+FNG AYVY ++ RP F+ Q+VNIWY
Sbjct: 372 LITLFEPTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAYVYQNYVRPAFIKNQMVNIWY 551
Query: 231 IXRNEKLGKSDD 196
+ + + L D
Sbjct: 552 VPQKKGLFGKSD 587
Score = 136 bits (292), Expect = 4e-031
Identities = 68/109 (62%), Positives = 73/109 (66%)
Frame = +2 / -1
Query: 233 YHMXTIWRFTNIGRXKWS*T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVIN 412
Y M TIW F G + T*A PL GKT Q+K +F Q GSH II A V SN VIN
Sbjct: 550 YQMLTIWFFMKAGLT*FWYT*AAPLKYGKTSQQIKINFIEGQKGSH*IIDANVGSNNVIN 371
Query: 413 EXXTQ*VSHC*SSTGFFVSIALTEAYRG*ASDMSGPARTSKLLASTLRK 559
TQ VSHC*SSTG VSIALTEAY+G*AS GPARTSKLLA+TL K
Sbjct: 370 GYRTQYVSHC*SSTGDLVSIALTEAYKG*ASATKGPARTSKLLATTLSK 224
Score = 30.9 bits (61), Expect(2) = 4e-059
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3 / +3
Query: 210 GKSDDVXXAAERYIEQNXXXAFXXLISKS 124
GKSDD A ++++E+N A L +K+
Sbjct: 576 GKSDDFLTALDKFVEENGTDALKKLANKA 662
>gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 3', mRNA sequence
Length = 671
Score = 213 bits (460), Expect = 2e-054
Identities = 87/103 (84%), Positives = 88/103 (85%)
Frame = -3 / +1
Query: 414 SFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIW 235
SFITLFELTFAPIIEWLPFWSYAKLFFNC LVLPWFNG AYVYDHF RP FVNRQIVNIW
Sbjct: 4 SFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIW 183
Query: 234 YIXRNEKLGKSDDVXXAAERYIEQNXXXAFXXLISKSTXXSXS 106
Y+ RNEKLGKSDDV AAERYIEQN AF LISKST S S
Sbjct: 184 YVPRNEKLGKSDDVLSAAERYIEQNGPEAFEKLISKSTKSSKS 312
Score = 194 bits (419), Expect = 1e-048
Identities = 84/103 (81%), Positives = 86/103 (83%)
Frame = +2 / -1
Query: 107 DXXXXVDLLMSXSNAXXXFCSIYLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS 286
D VDLLMS SNA FCSIYLSAA TSSDLPSFSFL YHM TIWRFTN+GR KWS
Sbjct: 311 DFEDFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS 132
Query: 287 *T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINE 415
*T*A PLNQGKT QLKN+FAYDQNGSHSIIGAKVSSNKVINE
Sbjct: 131 *T*AAPLNQGKTNQQLKNNFAYDQNGSHSIIGAKVSSNKVINE 3
Score = 182 bits (393), Expect = 4e-045
Identities = 80/98 (81%), Positives = 81/98 (82%)
Frame = +1 / -3
Query: 124 RLADELXKCXXXVLFNISLCSXXNIIRFT*LLISXNIPYVXYLAVHKHWPXKMVVNIGXT 303
RLADEL KC +L NISLCS NIIRFT*LLI NIPYV YLAVHK WP KMVVNI T
Sbjct: 294 RLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNISST 115
Query: 304 IEPRQDQXAVKEQLCIRPKWKPLDNWSKS*LKQSDK*V 417
IEPR DQ AVKEQLCI PKWKPLDNWSKS*LKQSDK*V
Sbjct: 114 IEPR*DQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*V 1
Score = 170 bits (365), Expect = 3e-041
Identities = 78/98 (79%), Positives = 80/98 (81%)
Frame = +3 / -2
Query: 123 *TC**AXQMXXVXFVQYISLQLXXHHQIYLASHFXXYTICXLFGGSQTLAXXNGRKHRQX 302
*TC**A QM V F QYISLQL HHQIYLASH +TIC LFGGSQTLA NGRKH+Q
Sbjct: 295 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 116
Query: 303 H*TKARPXSS*RTALHTTKMEATR*LEQKLAQTK**MS 416
H*TK RP SS*RT LH TKMEATR*LEQKLAQTK**MS
Sbjct: 115 H*TKVRPTSS*RTTLHMTKMEATR*LEQKLAQTK**MS 2
Score = 112 bits (239), Expect(2) = 4e-032
Identities = 56/81 (69%), Positives = 61/81 (75%)
Frame = -1 / +2
Query: 350 MQSCSLTAXWSCLGSMVLPMFTTIXXGQCL*TAK*XTYGIXXEMRS*VNLMMXXXLQRDI 171
MQSCSLTA WS LGSMVL MFTTI GQ L*TAK* TYG+ MRS*VNLMM LQRDI
Sbjct: 68 MQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAK**TYGMFQGMRS*VNLMMFCQLQRDI 247
Query: 170 LNKTXXXHLXSSSASLRXXRS 108
L+K HL SSSASL+ ++
Sbjct: 248 LSKMDRKHLRSSSASLQSLQN 310
Score = 111 bits (237), Expect = 1e-023
Identities = 48/62 (77%), Positives = 49/62 (79%)
Frame = -2 / +3
Query: 307 QWXCLCLRPFXXANVCEPPNSXHMVYXKK*EAR*I**CXXSCREIY*TKXTXXI*XAHQQ 128
QW CLCLRPF ANVCEPPNS HMV K+*EAR*I**C SCREIY* K T I* AHQQ
Sbjct: 111 QWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQ 290
Query: 127 VY 122
VY
Sbjct: 291 VY 296
Score = 47.3 bits (97), Expect(2) = 4e-032
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -2 / +3
Query: 415 LIYHFV*ANFCSNYRVASI 359
LIYHFV*ANFCSNYRVASI
Sbjct: 3 LIYHFV*ANFCSNYRVASI 59
>gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 499
Score = 197 bits (424), Expect = 2e-049
Identities = 79/108 (73%), Positives = 89/108 (82%)
Frame = -3 / +1
Query: 591 GRAGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXS 412
G + MGSGS LKV+ANNFDVLAGPL++LAYPLYASV+AIETK+ VDDQQWLTYWV S
Sbjct: 172 GIPATAMGSGSLLKVVANNFDVLAGPLVALAYPLYASVKAIETKSAVDDQQWLTYWVLYS 351
Query: 411 FITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRP 268
ITLFELTFA II+WLPFW KL F C LVLP+FNG AYVY ++ RP
Sbjct: 352 LITLFELTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAYVYQNYVRP 495
Score = 125 bits (268), Expect = 8e-028
Identities = 61/90 (67%), Positives = 66/90 (73%)
Frame = +2 / -3
Query: 290 T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVS 469
T*A PL GKT Q+K +F Q GSH II A VSSN VINE TQ VSHC*SST VS
Sbjct: 473 T*AAPLKYGKTSQQIKINFIEGQKGSH*IIDANVSSNNVINEYRTQYVSHC*SSTADLVS 294
Query: 470 IALTEAYRG*ASDMSGPARTSKLLASTLRK 559
IALTEAY+G*AS GPARTSKLLA+TL +
Sbjct: 293 IALTEAYKG*ASATKGPARTSKLLATTLSR 204
>gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 195 bits (421), Expect = 6e-049
Identities = 78/107 (72%), Positives = 88/107 (82%)
Frame = -3 / +2
Query: 591 GRAGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXS 412
G + MGSGS LKV+ANNFDVLAGPL++LAYPLYASV+AIETK+PVDDQQWLTYWV S
Sbjct: 182 GIPATAMGSGSLLKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYS 361
Query: 411 FITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
ITLFELTFA II+WLPFW KL F C LVLP+FNG YVY ++ R
Sbjct: 362 LITLFELTFASIIQWLPFWPSMKLIFICWLVLPYFNGATYVYQNYVR 502
Score = 127 bits (273), Expect = 2e-028
Identities = 62/90 (68%), Positives = 66/90 (73%)
Frame = +2 / -1
Query: 290 T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVS 469
T* PL GKT Q+K +F Q GSH II A VSSN VINE TQ VSHC*SSTG VS
Sbjct: 483 T*VAPLKYGKTSQQIKINFIEGQKGSH*IIDANVSSNNVINEYRTQYVSHC*SSTGDLVS 304
Query: 470 IALTEAYRG*ASDMSGPARTSKLLASTLRK 559
IALTEAY+G*AS GPARTSKLLA+TL K
Sbjct: 303 IALTEAYKG*ASATKGPARTSKLLATTLSK 214
>gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 453
Score = 175 bits (377), Expect = 7e-043
Identities = 71/94 (75%), Positives = 79/94 (84%)
Frame = -3 / +2
Query: 591 GRAGSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXS 412
G + MGSGS LKV+ANNFDVLAGPL++LAYPLYASV+AIETK+PVDDQQWLTYWV S
Sbjct: 170 GIPATAMGSGSLLKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYS 349
Query: 411 FITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPW 310
ITLFELTFA II+WLPFW KL F C LVLP+
Sbjct: 350 LITLFELTFASIIQWLPFWPSMKLIFICWLVLPY 451
Score = 120 bits (257), Expect = 2e-026
Identities = 58/82 (70%), Positives = 62/82 (75%)
Frame = +2 / -1
Query: 314 GKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVSIALTEAYR 493
GKT Q+K +F Q GSH II A VSSN VINE TQ VSHC*SSTG VSIALTEAY+
Sbjct: 447 GKTSQQIKINFIEGQKGSH*IIDANVSSNNVINEYRTQYVSHC*SSTGDLVSIALTEAYK 268
Query: 494 G*ASDMSGPARTSKLLASTLRK 559
G*AS GPARTSKLLA+TL K
Sbjct: 267 G*ASATKGPARTSKLLATTLSK 202
>gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 3', mRNA sequence
Length = 560
Score = 131 bits (280), Expect = 2e-029
Identities = 54/69 (78%), Positives = 55/69 (79%)
Frame = -3 / +1
Query: 312 WFNGXAYVYDHFXRPMFVNRQIVNIWYIXRNEKLGKSDDVXXAAERYIEQNXXXAFXXLI 133
WFNG AYVYDHF RP FVNRQIVNIWY+ RNEKLGKSDDV AAERYIEQN AF LI
Sbjct: 1 WFNGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKSDDVLSAAERYIEQNGPEAFEKLI 180
Query: 132 SKSTXXSXS 106
SKST S S
Sbjct: 181 SKSTKSSKS 207
Score = 121 bits (258), Expect = 2e-026
Identities = 52/68 (76%), Positives = 53/68 (77%)
Frame = +2 / -1
Query: 107 DXXXXVDLLMSXSNAXXXFCSIYLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS 286
D VDLLMS SNA FCSIYLSAA TSSDLPSFSFL YHM TIWRFTN+GR KWS
Sbjct: 206 DFEDFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS 27
Query: 287 *T*AXPLN 310
*T*A PLN
Sbjct: 26 *T*AAPLN 3
Score = 111 bits (237), Expect = 1e-023
Identities = 48/63 (76%), Positives = 49/63 (77%)
Frame = +1 / -3
Query: 124 RLADELXKCXXXVLFNISLCSXXNIIRFT*LLISXNIPYVXYLAVHKHWPXKMVVNIGXT 303
RLADEL KC +L NISLCS NIIRFT*LLI NIPYV YLAVHK WP KMVVNI T
Sbjct: 189 RLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNISST 10
Query: 304 IEP 312
IEP
Sbjct: 9 IEP 1
Score = 111 bits (237), Expect = 1e-023
Identities = 48/62 (77%), Positives = 49/62 (79%)
Frame = -2 / +3
Query: 307 QWXCLCLRPFXXANVCEPPNSXHMVYXKK*EAR*I**CXXSCREIY*TKXTXXI*XAHQQ 128
QW CLCLRPF ANVCEPPNS HMV K+*EAR*I**C SCREIY* K T I* AHQQ
Sbjct: 6 QWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQ 185
Query: 127 VY 122
VY
Sbjct: 186 VY 191
Score = 108 bits (230), Expect = 1e-022
Identities = 47/63 (74%), Positives = 49/63 (77%)
Frame = +3 / -2
Query: 123 *TC**AXQMXXVXFVQYISLQLXXHHQIYLASHFXXYTICXLFGGSQTLAXXNGRKHRQX 302
*TC**A QM V F QYISLQL HHQIYLASH +TIC LFGGSQTLA NGRKH+Q
Sbjct: 190 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 11
Query: 303 H*T 311
H*T
Sbjct: 10 H*T 2
>gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 123 bits (263), Expect = 4e-027
Identities = 52/67 (77%), Positives = 53/67 (79%)
Frame = -3 / +3
Query: 306 NGXAYVYDHFXRPMFVNRQIVNIWYIXRNEKLGKSDDVXXAAERYIEQNXXXAFXXLISK 127
NG AYVYDHF RP FVNRQIVNIWY+ RNEKLGKSDDV AAERYIEQN AF LISK
Sbjct: 3 NGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKSDDVLSAAERYIEQNGPEAFEKLISK 182
Query: 126 STXXSXS 106
ST S S
Sbjct: 183 STKSSKS 203
Score = 118 bits (252), Expect = 1e-025
Identities = 51/67 (76%), Positives = 52/67 (77%)
Frame = +2 / -2
Query: 107 DXXXXVDLLMSXSNAXXXFCSIYLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS 286
D VDLLMS SNA FCSIYLSAA TSSDLPSFSFL YHM TIWRFTN+GR KWS
Sbjct: 202 DFEDFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS 23
Query: 287 *T*AXPL 307
*T*A PL
Sbjct: 22 *T*AAPL 2
Score = 111 bits (237), Expect = 1e-023
Identities = 48/62 (77%), Positives = 49/62 (79%)
Frame = -2 / +2
Query: 307 QWXCLCLRPFXXANVCEPPNSXHMVYXKK*EAR*I**CXXSCREIY*TKXTXXI*XAHQQ 128
QW CLCLRPF ANVCEPPNS HMV K+*EAR*I**C SCREIY* K T I* AHQQ
Sbjct: 2 QWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQ 181
Query: 127 VY 122
VY
Sbjct: 182 VY 187
Score = 105 bits (225), Expect = 6e-022
Identities = 46/61 (75%), Positives = 47/61 (77%)
Frame = +1 / -1
Query: 124 RLADELXKCXXXVLFNISLCSXXNIIRFT*LLISXNIPYVXYLAVHKHWPXKMVVNIGXT 303
RLADEL KC +L NISLCS NIIRFT*LLI NIPYV YLAVHK WP KMVVNI T
Sbjct: 185 RLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNISST 6
Query: 304 I 306
I
Sbjct: 5 I 3
Score = 105 bits (225), Expect = 6e-022
Identities = 46/62 (74%), Positives = 48/62 (77%)
Frame = +3 / -3
Query: 123 *TC**AXQMXXVXFVQYISLQLXXHHQIYLASHFXXYTICXLFGGSQTLAXXNGRKHRQX 302
*TC**A QM V F QYISLQL HHQIYLASH +TIC LFGGSQTLA NGRKH+Q
Sbjct: 186 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 7
Query: 303 H* 308
H*
Sbjct: 6 H* 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 802,159,238
Number of Sequences: 832831
Number of extensions: 12069994
Number of successful extensions: 173560
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 26139010040
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)