TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW226517.1|CW226517 104_664_11204928_148_37221_088 Sorgh... 166 2e-046
gb|BZ335127.1|BZ335127 hx95f10.b1 WGS-SbicolorF (JM107 adap... 166 2e-040
gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1... 161 1e-038
gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum b... 161 1e-038
gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum b... 161 1e-038
gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bi... 161 1e-038
gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bi... 161 1e-038
gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum b... 161 1e-038
gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum b... 161 1e-038
gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum b... 161 1e-038
gb|CF484658.1|CF484658 POL1_26_E07.g1_A002 Pollen Sorghum b... 156 2e-037
gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorgh... 152 6e-036
gb|CL168403.1|CL168403 104_366_10810792_148_31806_088 Sorgh... 149 3e-035
gb|CW443839.1|CW443839 fsbb001f164c12f0 Sorghum methylation... 149 3e-035
gb|BE357918.1|BE357918 DG1_23_F06.b1_A002 Dark Grown 1 (DG1... 149 3e-035
gb|BE357990.1|BE357990 DG1_23_F06.g1_A002 Dark Grown 1 (DG1... 149 3e-035
gb|BE358689.1|BE358689 DG1_31_E11.b1_A002 Dark Grown 1 (DG1... 149 3e-035
gb|BE358567.1|BE358567 DG1_31_E11.g1_A002 Dark Grown 1 (DG1... 149 3e-035
gb|CW301949.1|CW301949 104_786_11464467_116_35662_016 Sorgh... 148 1e-034
gb|CF488807.1|CF488807 POL1_52_G10.b1_A002 Pollen Sorghum b... 136 3e-031
gb|CW387256.1|CW387256 fsbb001f071i10f0 Sorghum methylation... 136 4e-031
gb|BE355997.1|BE355997 DG1_121_G12.b1_A002 Dark Grown 1 (DG... 136 4e-031
gb|CW356428.1|CW356428 fsbb001f021i03f0 Sorghum methylation... 103 2e-030
gb|CW270223.1|CW270223 104_741_11402291_148_35328_036 Sorgh... 110 2e-023
>gb|CW226517.1|CW226517 104_664_11204928_148_37221_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204928, DNA
sequence
Length = 679
Score = 166 bits (358), Expect(3) = 2e-046
Identities = 59/64 (92%), Positives = 60/64 (93%)
Frame = +2 / -1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPCLFFCRKCCA CLCVP GTYGNKNTCPCYNNWKTKRGGPKCP
Sbjct: 235 ECGGRCAARCSATAYRKPCLFFCRKCCATCLCVPAGTYGNKNTCPCYNNWKTKRGGPKCP 56
Query: 527 **PS 538
** S
Sbjct: 55 **AS 44
Score = 90.4 bits (191), Expect(5) = 4e-034
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = -2 / +3
Query: 462 P*VPGGTHRHAAQHLRQKKRHGFWYAVAEHRSAHRPPHS 346
P*VP GTHRH AQH RQKKRHGF YAVAEHR+AHRPPHS
Sbjct: 120 P*VPAGTHRHVAQHFRQKKRHGFRYAVAEHRAAHRPPHS 236
Score = 36.3 bits (73), Expect(5) = 4e-034
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +2
Query: 224 AVPELDPASARNKRPG 177
+ PELDPA+ARNKRPG
Sbjct: 563 SAPELDPATARNKRPG 610
Score = 35.9 bits (72), Expect(5) = 4e-034
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -3 / +2
Query: 302 LGAGMRWAWLAEEQ 261
LG GMRWAWLAEE+
Sbjct: 500 LGVGMRWAWLAEEE 541
Score = 32.7 bits (65), Expect(5) = 4e-034
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3 / +1
Query: 536 RATRGTWGLPAW 501
R TRGTWGLP+W
Sbjct: 46 RPTRGTWGLPSW 81
Score = 31.3 bits (62), Expect(3) = 2e-046
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / -2
Query: 178 PGRLFRADAGSSSG 219
PGRLFRA AGSSSG
Sbjct: 609 PGRLFRAVAGSSSG 568
Score = 29.9 bits (59), Expect(3) = 2e-046
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 265 SSASQAQRIPAPN 303
SSASQAQRIP PN
Sbjct: 537 SSASQAQRIPTPN 499
Score = 23.1 bits (44), Expect(5) = 4e-034
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2 / +1
Query: 345 WGWRLP 328
WGWRLP
Sbjct: 358 WGWRLP 375
>gb|BZ335127.1|BZ335127 hx95f10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx95f10 5', DNA sequence
Length = 670
Score = 166 bits (358), Expect = 2e-040
Identities = 59/64 (92%), Positives = 60/64 (93%)
Frame = +2 / -2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPCLFFCRKCCA CLCVP GTYGNKNTCPCYNNWKTKRGGPKCP
Sbjct: 462 ECGGRCAARCSATAYRKPCLFFCRKCCATCLCVPAGTYGNKNTCPCYNNWKTKRGGPKCP 283
Query: 527 **PS 538
** S
Sbjct: 282 **AS 271
Score = 90.4 bits (191), Expect(2) = 2e-021
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = -2 / +2
Query: 462 P*VPGGTHRHAAQHLRQKKRHGFWYAVAEHRSAHRPPHS 346
P*VP GTHRH AQH RQKKRHGF YAVAEHR+AHRPPHS
Sbjct: 347 P*VPAGTHRHVAQHFRQKKRHGFRYAVAEHRAAHRPPHS 463
Score = 32.7 bits (65), Expect(2) = 2e-021
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3 / +3
Query: 536 RATRGTWGLPAW 501
R TRGTWGLP+W
Sbjct: 273 RPTRGTWGLPSW 308
>gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 599
Score = 161 bits (346), Expect = 1e-038
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 189 GKGNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKT 368
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 369 KRGGPKCP* 395
>gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_72_E06_A002 5', mRNA sequence
Length = 628
Score = 161 bits (346), Expect = 1e-038
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 288 GKGNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKT 467
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 468 KRGGPKCP* 494
>gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_12_A09_A002 5', mRNA sequence
Length = 490
Score = 161 bits (346), Expect = 1e-038
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +2 / -3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 449 GKGTLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKT 270
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 269 KRGGPKCP* 243
>gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 3', mRNA sequence
Length = 576
Score = 161 bits (346), Expect = 1e-038
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 155 GKGNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKT 334
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 335 KRGGPKCP* 361
>gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 5', mRNA sequence
Length = 626
Score = 161 bits (346), Expect = 1e-038
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 286 GKGNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKT 465
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 466 KRGGPKCP* 492
>gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C10_A002 5', mRNA sequence
Length = 521
Score = 161 bits (346), Expect = 1e-038
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +2 / -1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 449 GKGNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKT 270
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 269 KRGGPKCP* 243
>gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_H04_A002 3', mRNA sequence
Length = 561
Score = 161 bits (346), Expect = 1e-038
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 140 GKGTLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKT 319
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 320 KRGGPKCP* 346
>gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_B10_A002 5', mRNA sequence
Length = 713
Score = 161 bits (346), Expect = 1e-038
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 283 GKGNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKT 462
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 463 KRGGPKCP* 489
>gb|CF484658.1|CF484658 POL1_26_E07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_26_E07_A002 5', mRNA sequence
Length = 532
Score = 156 bits (336), Expect = 2e-037
Identities = 53/69 (76%), Positives = 59/69 (85%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L+P +CGG C RCS T ++KPCLFFC K CA CLCVPPGTYGNK+TCPCYNNWKT
Sbjct: 295 GKGNLKPSQCGGECKRRCSKTHHKKPCLFFCNKXCAXCLCVPPGTYGNKDTCPCYNNWKT 474
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 475 KRGGPKCP* 501
>gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096662, DNA
sequence
Length = 551
Score = 152 bits (326), Expect = 6e-036
Identities = 51/61 (83%), Positives = 54/61 (88%)
Frame = +2 / -2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGG C RCS T ++KPCLFFC KCCA CLCVPPGTYGNK+TCPCYNNWKTKRGGPKCP
Sbjct: 310 ECGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGGPKCP 131
Query: 527 * 529
*
Sbjct: 130 * 128
>gb|CL168403.1|CL168403 104_366_10810792_148_31806_088 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810792, DNA
sequence
Length = 737
Score = 149 bits (321), Expect = 3e-035
Identities = 52/74 (70%), Positives = 56/74 (75%)
Frame = +2 / +1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPG YGNK CPCY
Sbjct: 91 GGSPSGGGNLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCY 270
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 271 NNWKTKEGGPKCP* 312
>gb|CW443839.1|CW443839 fsbb001f164c12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164c12, DNA
sequence
Length = 721
Score = 149 bits (321), Expect = 3e-035
Identities = 52/74 (70%), Positives = 56/74 (75%)
Frame = +2 / +2
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPG YGNK CPCY
Sbjct: 122 GGSPSGGGNLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCY 301
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 302 NNWKTKEGGPKCP* 343
>gb|BE357918.1|BE357918 DG1_23_F06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 650
Score = 149 bits (321), Expect = 3e-035
Identities = 52/74 (70%), Positives = 56/74 (75%)
Frame = +2 / +2
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPG YGNK CPCY
Sbjct: 167 GGSPSGGGNLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCY 346
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 347 NNWKTKEGGPKCP* 388
>gb|BE357990.1|BE357990 DG1_23_F06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 684
Score = 149 bits (321), Expect = 3e-035
Identities = 52/74 (70%), Positives = 56/74 (75%)
Frame = +2 / +1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPG YGNK CPCY
Sbjct: 97 GGSPSGGGNLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCY 276
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 277 NNWKTKEGGPKCP* 318
>gb|BE358689.1|BE358689 DG1_31_E11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 149 bits (321), Expect = 3e-035
Identities = 52/74 (70%), Positives = 56/74 (75%)
Frame = +2 / +3
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPG YGNK CPCY
Sbjct: 171 GGSPSGGGNLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCY 350
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 351 NNWKTKEGGPKCP* 392
>gb|BE358567.1|BE358567 DG1_31_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 149 bits (321), Expect = 3e-035
Identities = 52/74 (70%), Positives = 56/74 (75%)
Frame = +2 / +2
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPG YGNK CPCY
Sbjct: 44 GGSPSGGGNLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCY 223
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 224 NNWKTKEGGPKCP* 265
>gb|CW301949.1|CW301949 104_786_11464467_116_35662_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464467, DNA
sequence
Length = 661
Score = 148 bits (317), Expect = 1e-034
Identities = 51/74 (68%), Positives = 56/74 (75%)
Frame = +2 / +1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPG YGNK CPCY
Sbjct: 406 GGSPSGGGNLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCY 585
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGP+CP*
Sbjct: 586 NNWKTKEGGPQCP* 627
>gb|CF488807.1|CF488807 POL1_52_G10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_52_G10_A002 3', mRNA sequence
Length = 617
Score = 136 bits (292), Expect = 3e-031
Identities = 47/62 (75%), Positives = 50/62 (80%)
Frame = +2 / +1
Query: 344 HECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKC 523
H G RCS T ++KPCL FC KCCA CLCVPPGTYGNK+TCPCYNNWKTKRGGPKC
Sbjct: 244 HTAGREWKGRCSKTHHKKPCLLFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGGPKC 423
Query: 524 P* 529
P*
Sbjct: 424 P* 429
>gb|CW387256.1|CW387256 fsbb001f071i10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071i10, DNA
sequence
Length = 696
Score = 136 bits (291), Expect = 4e-031
Identities = 46/68 (67%), Positives = 50/68 (73%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C+ RC T Y+KPCLFFC KCC CLCVP G YGNK CPCYNNWKTKRGGPKCP
Sbjct: 256 ECSPQCSRRCGNTRYKKPCLFFCNKCCNTCLCVPSGYYGNKGECPCYNNWKTKRGGPKCP 435
Query: 527 **PSLSVY 550
* + Y
Sbjct: 436 *AEGVRAY 459
>gb|BE355997.1|BE355997 DG1_121_G12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 136 bits (291), Expect = 4e-031
Identities = 46/68 (67%), Positives = 50/68 (73%)
Frame = +2 / +3
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C+ RC T Y+KPCLFFC KCC CLCVP G YGNK CPCYNNWKTKRGGPKCP
Sbjct: 90 ECSPQCSRRCGNTRYKKPCLFFCNKCCNTCLCVPSGYYGNKGECPCYNNWKTKRGGPKCP 269
Query: 527 **PSLSVY 550
* + Y
Sbjct: 270 *AEGVRAY 293
>gb|CW356428.1|CW356428 fsbb001f021i03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021i03, DNA
sequence
Length = 676
Score = 103 bits (220), Expect(2) = 2e-030
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +2 / -1
Query: 419 KCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP* 529
+CCA CLCVPPGTYGNK+TCPCYNNWKTKRGGPKCP*
Sbjct: 592 RCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGGPKCP* 482
Score = 49.6 bits (102), Expect(2) = 2e-030
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2 / -2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLC 442
ECGG RCS T ++KPCLFFC++ A C
Sbjct: 666 ECGGESKRRCSKTHHKKPCLFFCKQGVAPSAC 571
>gb|CW270223.1|CW270223 104_741_11402291_148_35328_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402291, DNA
sequence
Length = 622
Score = 110 bits (235), Expect = 2e-023
Identities = 38/59 (64%), Positives = 42/59 (71%)
Frame = +2 / +1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPC 484
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPG YGNK CPC
Sbjct: 445 GGSPSGGGNLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPC 621
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 702,072,823
Number of Sequences: 832831
Number of extensions: 11371786
Number of successful extensions: 160258
Number of sequences better than 1.0e-020: 26
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19485443848
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)