TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2655972.2.1
(666 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW139829.1|CW139829 104_530_11135453_116_34914_029 Sorgh... 292 4e-081
gb|CW186992.1|CW186992 104_605_11166856_148_36719_062 Sorgh... 292 5e-078
gb|CW156393.1|CW156393 104_559_11146661_116_36371_025 Sorgh... 270 1e-071
gb|CD230946.1|CD230946 SS1_7_E05.b1_A012 Salt-stressed seed... 170 8e-060
gb|CW139830.1|CW139830 104_530_11135453_148_34918_029 Sorgh... 106 3e-022
>gb|CW139829.1|CW139829 104_530_11135453_116_34914_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135453, DNA
sequence
Length = 637
Score = 292 bits (631), Expect(2) = 4e-081
Identities = 120/128 (93%), Positives = 124/128 (96%)
Frame = +2 / -1
Query: 38 VLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKEQS 217
V+FFFGCRNQ+NDFLYKDFWLTHAQDEGVLSSK+GGG FVAFSRDQPQKVYVQ KIKE S
Sbjct: 502 VMFFFGCRNQDNDFLYKDFWLTHAQDEGVLSSKKGGGLFVAFSRDQPQKVYVQHKIKEHS 323
Query: 218 SRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQADASKWLRDLERAGRLNI 397
SR+WNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQ DASKWLRDLERAGRLNI
Sbjct: 322 SRVWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQEDASKWLRDLERAGRLNI 143
Query: 398 ETWS*L*W 421
ETWS*L*W
Sbjct: 142 ETWS*L*W 119
Score = 268 bits (580), Expect(2) = 3e-076
Identities = 117/128 (91%), Positives = 120/128 (93%)
Frame = -1 / +3
Query: 420 HHNYDHVSMLSLPALSRSLSHFEASACLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD 241
HHNYD VSMLSLPALSRSLSHFEAS+CLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD
Sbjct: 120 HHNYDQVSMLSLPALSRSLSHFEASSCLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD 299
Query: 240 SNKFHSLELCSFILGCT*TFCG*SREKATKKPPPLFEDNTPSSCA*VSQKSLYRKSFSWF 61
SNKFH+LELCSFIL CT*TF G*SREKAT KPPP FEDNTPSS A*V+QKSLYRKS SWF
Sbjct: 300 SNKFHTLELCSFILCCT*TF*G*SREKATNKPPPFFEDNTPSSWA*VNQKSLYRKSLSWF 479
Query: 60 LQPKKNRT 37
LQPKKN T
Sbjct: 480 LQPKKNIT 503
Score = 244 bits (527), Expect(2) = 6e-066
Identities = 102/128 (79%), Positives = 111/128 (86%)
Frame = -2 / +1
Query: 419 ITTMTMSRC*VYQPFLDP*AISKHPLA*HHLLYK*PPLAQL*HRQAFSSKSLQCRSLHRT 240
ITTMT SRC*VYQ F DP*AI KHPL *HHLLYK*PP QL*H++AFSSKS QC+ LHRT
Sbjct: 121 ITTMTKSRC*VYQLFQDP*AILKHPLV*HHLLYK*PPPVQL*HQRAFSSKSPQCK*LHRT 300
Query: 239 VISSTVLNSVPLSWVARRPFAADPGKKRRRNHRPFSRTTPPHPAHELARNPCIENRFLGF 60
VISST+LN VPLS+VA RPF ADPGKK++ NH PFSRTTPPHP HEL RNPCIENR+LGF
Sbjct: 301 VISSTLLNYVPLSYVAHRPFEADPGKKQQINHHPFSRTTPPHPGHELTRNPCIENRYLGF 480
Query: 59 YSQKRTEP 36
YSQ+RT P
Sbjct: 481 YSQRRT*P 504
Score = 238 bits (514), Expect(2) = 4e-064
Identities = 103/133 (77%), Positives = 108/133 (81%)
Frame = +1 / -3
Query: 37 GSVLFWL*KPRKRFSIQGFLANSCAG*GGVVLEKGRWFLRRFFPGSAAKGLRATQDKGTE 216
G VL WL*KPR RFSIQGFL NSC G*GGVVLEKG WF+ FFPGSA+KGL AT DKGT
Sbjct: 503 GYVLLWL*KPR*RFSIQGFLVNSCPG*GGVVLEKGWWFICCFFPGSASKGLCAT*DKGT* 324
Query: 217 FKTVELITVRCSDLHCRLFDENACRCYSCARGGYL*RRWCQASGCFEMAQGSRKGW*T*H 396
FK+VELITVRCS LHC LFDENA CYSC GGYL*RRWCQ GCF+MAQGS K W*T*H
Sbjct: 323 FKSVELITVRCSYLHCGLFDENAR*CYSCTGGGYL*RRWCQTRGCFKMAQGS*KSW*T*H 144
Query: 397 RDMVIVVMGKKVH 435
RD+VIVVM H
Sbjct: 143 RDLVIVVMVSICH 105
Score = 228 bits (493), Expect(2) = 3e-061
Identities = 103/129 (79%), Positives = 107/129 (82%)
Frame = +3 / -2
Query: 36 RFCSFLAVETKKTIFYTRISG*LMRRMRGCCPRKGAVVSSSLFPGISRKRSTCNPR*RNR 215
R CS LAVETK TIFYTRISG*LM RMRGCCPRK VV LFPGIS KRS CN R*RN
Sbjct: 504 RLCSSLAVETKITIFYTRISG*LMPRMRGCCPRKRVVVYLLLFPGISLKRSMCNIR*RNI 325
Query: 216 VQDCGTYYCPMQ*STLQALRRKCLPMLQLR*RRLFVKKVVSSKRMLRNGSGI*KGLVDLT 395
VQ+CGTYYCPMQ TL+ALRRKC MLQL RRLFVKKVVS+KRML+NGSGI K LVDLT
Sbjct: 324 VQECGTYYCPMQLFTLRALRRKCPLMLQLHWRRLFVKKVVSNKRMLQNGSGILKELVDLT 145
Query: 396 SRHGHSCDG 422
SR GHSCDG
Sbjct: 144 SRLGHSCDG 118
Score = 193 bits (415), Expect(2) = 3e-050
Identities = 92/129 (71%), Positives = 99/129 (76%)
Frame = -3 / +2
Query: 421 PSQL*PCLDVKSTSPF*IPEPFRSIRXXXXXXXXXXXX*RSCNIGRHFRRRACNVDHCIG 242
PSQL*P LDVKSTS F IPEPF SI SCNI HFRRRA NV++CIG
Sbjct: 119 PSQL*PSLDVKSTSSFKIPEPF*SILLFDTTFFTNNLLQCSCNISGHFRRRARNVNNCIG 298
Query: 241 Q**VPQS*TLFLYLGLHVDLLRLIPGKSDEETTAPFRGQHPLILRMS*PEILV*KIVFLV 62
Q**VP S*T+FLYL LH+DLLRLIPGKS++ TT FRGQHPLIL MS*PEILV*KIV LV
Sbjct: 299 Q**VPHS*TMFLYLMLHIDLLRLIPGKSNK*TTTLFRGQHPLILGMS*PEILV*KIVILV 478
Query: 61 STAKKEQNR 35
STAK+E NR
Sbjct: 479 STAKEEHNR 505
Score = 38.2 bits (77), Expect(2) = 3e-076
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -1 / +2
Query: 513 YTFPHFQCL*FTGKFSLV 460
Y FPHFQCL*FT FSLV
Sbjct: 2 YKFPHFQCL*FTMTFSLV 55
Score = 31.3 bits (62), Expect(2) = 4e-081
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / -2
Query: 461 TSENFPVNQRHWKCGNV 511
T EN VNQRH KCGN+
Sbjct: 54 TRENVIVNQRH*KCGNL 4
Score = 28.1 bits (55), Expect(2) = 3e-061
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1 / -1
Query: 469 EFPCKSKALEMWKRV 513
E CKSKAL+MWK V
Sbjct: 46 ECHCKSKALKMWKFV 2
Score = 28.1 bits (55), Expect(2) = 4e-064
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3 / -3
Query: 468 RISL*IKGIGNVETC 512
R+SL*IKGI NVE C
Sbjct: 47 RMSL*IKGIENVEIC 3
Score = 28.1 bits (55), Expect(2) = 6e-066
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 514 LHVSTFPMPLIYREIL 467
+ +STF MPLIY +IL
Sbjct: 1 VQISTFSMPLIYNDIL 48
Score = 27.2 bits (53), Expect(2) = 3e-050
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2 / +3
Query: 512 TRFHISNAFDLQGNS 468
T FHI NAFDLQ +S
Sbjct: 3 TNFHIFNAFDLQ*HS 47
>gb|CW186992.1|CW186992 104_605_11166856_148_36719_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166856, DNA
sequence
Length = 696
Score = 292 bits (631), Expect = 5e-078
Identities = 120/128 (93%), Positives = 124/128 (96%)
Frame = +2 / -2
Query: 38 VLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKEQS 217
V+FFFGCRNQ+NDFLYKDFWLTHAQDEGVLSSK+GGG FVAFSRDQPQKVYVQ KIKE S
Sbjct: 392 VMFFFGCRNQDNDFLYKDFWLTHAQDEGVLSSKKGGGLFVAFSRDQPQKVYVQHKIKEHS 213
Query: 218 SRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQADASKWLRDLERAGRLNI 397
SR+WNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQ DASKWLRDLERAGRLNI
Sbjct: 212 SRVWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQEDASKWLRDLERAGRLNI 33
Query: 398 ETWS*L*W 421
ETWS*L*W
Sbjct: 32 ETWS*L*W 9
Score = 268 bits (580), Expect = 5e-071
Identities = 117/128 (91%), Positives = 120/128 (93%)
Frame = -1 / +1
Query: 420 HHNYDHVSMLSLPALSRSLSHFEASACLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD 241
HHNYD VSMLSLPALSRSLSHFEAS+CLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD
Sbjct: 10 HHNYDQVSMLSLPALSRSLSHFEASSCLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD 189
Query: 240 SNKFHSLELCSFILGCT*TFCG*SREKATKKPPPLFEDNTPSSCA*VSQKSLYRKSFSWF 61
SNKFH+LELCSFIL CT*TF G*SREKAT KPPP FEDNTPSS A*V+QKSLYRKS SWF
Sbjct: 190 SNKFHTLELCSFILCCT*TF*G*SREKATNKPPPFFEDNTPSSWA*VNQKSLYRKSLSWF 369
Query: 60 LQPKKNRT 37
LQPKKN T
Sbjct: 370 LQPKKNIT 393
Score = 244 bits (527), Expect = 1e-063
Identities = 102/128 (79%), Positives = 111/128 (86%)
Frame = -2 / +2
Query: 419 ITTMTMSRC*VYQPFLDP*AISKHPLA*HHLLYK*PPLAQL*HRQAFSSKSLQCRSLHRT 240
ITTMT SRC*VYQ F DP*AI KHPL *HHLLYK*PP QL*H++AFSSKS QC+ LHRT
Sbjct: 11 ITTMTKSRC*VYQLFQDP*AILKHPLV*HHLLYK*PPPVQL*HQRAFSSKSPQCK*LHRT 190
Query: 239 VISSTVLNSVPLSWVARRPFAADPGKKRRRNHRPFSRTTPPHPAHELARNPCIENRFLGF 60
VISST+LN VPLS+VA RPF ADPGKK++ NH PFSRTTPPHP HEL RNPCIENR+LGF
Sbjct: 191 VISSTLLNYVPLSYVAHRPFEADPGKKQQINHHPFSRTTPPHPGHELTRNPCIENRYLGF 370
Query: 59 YSQKRTEP 36
YSQ+RT P
Sbjct: 371 YSQRRT*P 394
Score = 237 bits (513), Expect = 9e-062
Identities = 102/128 (79%), Positives = 107/128 (83%)
Frame = +1 / -1
Query: 37 GSVLFWL*KPRKRFSIQGFLANSCAG*GGVVLEKGRWFLRRFFPGSAAKGLRATQDKGTE 216
G VL WL*KPR RFSIQGFL NSC G*GGVVLEKG WF+ FFPGSA+KGL AT DKGT
Sbjct: 393 GYVLLWL*KPR*RFSIQGFLVNSCPG*GGVVLEKGWWFICCFFPGSASKGLCAT*DKGT* 214
Query: 217 FKTVELITVRCSDLHCRLFDENACRCYSCARGGYL*RRWCQASGCFEMAQGSRKGW*T*H 396
FK+VELITVRCS LHC LFDENA CYSC GGYL*RRWCQ GCF+MAQGS K W*T*H
Sbjct: 213 FKSVELITVRCSYLHCGLFDENAR*CYSCTGGGYL*RRWCQTRGCFKMAQGS*KSW*T*H 34
Query: 397 RDMVIVVM 420
RD+VIVVM
Sbjct: 33 RDLVIVVM 10
Score = 228 bits (493), Expect = 5e-059
Identities = 103/129 (79%), Positives = 107/129 (82%)
Frame = +3 / -3
Query: 36 RFCSFLAVETKKTIFYTRISG*LMRRMRGCCPRKGAVVSSSLFPGISRKRSTCNPR*RNR 215
R CS LAVETK TIFYTRISG*LM RMRGCCPRK VV LFPGIS KRS CN R*RN
Sbjct: 394 RLCSSLAVETKITIFYTRISG*LMPRMRGCCPRKRVVVYLLLFPGISLKRSMCNIR*RNI 215
Query: 216 VQDCGTYYCPMQ*STLQALRRKCLPMLQLR*RRLFVKKVVSSKRMLRNGSGI*KGLVDLT 395
VQ+CGTYYCPMQ TL+ALRRKC MLQL RRLFVKKVVS+KRML+NGSGI K LVDLT
Sbjct: 214 VQECGTYYCPMQLFTLRALRRKCPLMLQLHWRRLFVKKVVSNKRMLQNGSGILKELVDLT 35
Query: 396 SRHGHSCDG 422
SR GHSCDG
Sbjct: 34 SRLGHSCDG 8
Score = 193 bits (415), Expect = 3e-048
Identities = 92/129 (71%), Positives = 99/129 (76%)
Frame = -3 / +3
Query: 421 PSQL*PCLDVKSTSPF*IPEPFRSIRXXXXXXXXXXXX*RSCNIGRHFRRRACNVDHCIG 242
PSQL*P LDVKSTS F IPEPF SI SCNI HFRRRA NV++CIG
Sbjct: 9 PSQL*PSLDVKSTSSFKIPEPF*SILLFDTTFFTNNLLQCSCNISGHFRRRARNVNNCIG 188
Query: 241 Q**VPQS*TLFLYLGLHVDLLRLIPGKSDEETTAPFRGQHPLILRMS*PEILV*KIVFLV 62
Q**VP S*T+FLYL LH+DLLRLIPGKS++ TT FRGQHPLIL MS*PEILV*KIV LV
Sbjct: 189 Q**VPHS*TMFLYLMLHIDLLRLIPGKSNK*TTTLFRGQHPLILGMS*PEILV*KIVILV 368
Query: 61 STAKKEQNR 35
STAK+E NR
Sbjct: 369 STAKEEHNR 395
>gb|CW156393.1|CW156393 104_559_11146661_116_36371_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146661, DNA
sequence
Length = 727
Score = 270 bits (585), Expect = 1e-071
Identities = 111/119 (93%), Positives = 115/119 (96%)
Frame = +2 / -2
Query: 38 VLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSRDQPQKVYVQPKIKEQS 217
V+FFFGCRNQ+NDFLYKDFWLTHAQDEGVLSSK+GGG FVAFSRDQPQKVYVQ KIKE S
Sbjct: 357 VMFFFGCRNQDNDFLYKDFWLTHAQDEGVLSSKKGGGLFVAFSRDQPQKVYVQHKIKEHS 178
Query: 218 SRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQADASKWLRDLERAGRLN 394
SR+WNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQ DASKWLRDLERAGRLN
Sbjct: 177 SRVWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQEDASKWLRDLERAGRLN 1
Score = 246 bits (532), Expect = 2e-064
Identities = 109/119 (91%), Positives = 112/119 (94%)
Frame = -1 / +2
Query: 393 LSLPALSRSLSHFEASACLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHSLEL 214
LSLPALSRSLSHFEAS+CLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFH+LEL
Sbjct: 2 LSLPALSRSLSHFEASSCLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASDSNKFHTLEL 181
Query: 213 CSFILGCT*TFCG*SREKATKKPPPLFEDNTPSSCA*VSQKSLYRKSFSWFLQPKKNRT 37
CSFIL CT*TF G*SREKAT KPPP FEDNTPSS A*V+QKSLYRKS SWFLQPKKN T
Sbjct: 182 CSFILCCT*TF*G*SREKATNKPPPFFEDNTPSSWA*VNQKSLYRKSLSWFLQPKKNIT 358
Score = 225 bits (486), Expect = 5e-058
Identities = 94/119 (78%), Positives = 103/119 (86%)
Frame = -2 / +3
Query: 392 *VYQPFLDP*AISKHPLA*HHLLYK*PPLAQL*HRQAFSSKSLQCRSLHRTVISSTVLNS 213
*VYQ F DP*AI KHPL *HHLLYK*PP QL*H++AFSSKS QC+ LHRTVISST+LN
Sbjct: 3 *VYQLFQDP*AILKHPLV*HHLLYK*PPPVQL*HQRAFSSKSPQCK*LHRTVISSTLLNY 182
Query: 212 VPLSWVARRPFAADPGKKRRRNHRPFSRTTPPHPAHELARNPCIENRFLGFYSQKRTEP 36
VPLS+VA RPF ADPGKK++ NH PFSRTTPPHP HEL RNPCIENR+LGFYSQ+RT P
Sbjct: 183 VPLSYVAHRPFEADPGKKQQINHHPFSRTTPPHPGHELTRNPCIENRYLGFYSQRRT*P 359
Score = 218 bits (471), Expect = 6e-056
Identities = 94/119 (78%), Positives = 98/119 (82%)
Frame = +1 / -1
Query: 37 GSVLFWL*KPRKRFSIQGFLANSCAG*GGVVLEKGRWFLRRFFPGSAAKGLRATQDKGTE 216
G VL WL*KPR RFSIQGFL NSC G*GGVVLEKG WF+ FFPGSA+KGL AT DKGT
Sbjct: 358 GYVLLWL*KPR*RFSIQGFLVNSCPG*GGVVLEKGWWFICCFFPGSASKGLCAT*DKGT* 179
Query: 217 FKTVELITVRCSDLHCRLFDENACRCYSCARGGYL*RRWCQASGCFEMAQGSRKGW*T* 393
FK+VELITVRCS LHC LFDENA CYSC GGYL*RRWCQ GCF+MAQGS K W*T*
Sbjct: 178 FKSVELITVRCSYLHCGLFDENAR*CYSCTGGGYL*RRWCQTRGCFKMAQGS*KSW*T* 2
Score = 205 bits (443), Expect = 4e-052
Identities = 94/119 (78%), Positives = 98/119 (82%)
Frame = +3 / -3
Query: 36 RFCSFLAVETKKTIFYTRISG*LMRRMRGCCPRKGAVVSSSLFPGISRKRSTCNPR*RNR 215
R CS LAVETK TIFYTRISG*LM RMRGCCPRK VV LFPGIS KRS CN R*RN
Sbjct: 359 RLCSSLAVETKITIFYTRISG*LMPRMRGCCPRKRVVVYLLLFPGISLKRSMCNIR*RNI 180
Query: 216 VQDCGTYYCPMQ*STLQALRRKCLPMLQLR*RRLFVKKVVSSKRMLRNGSGI*KGLVDL 392
VQ+CGTYYCPMQ TL+ALRRKC MLQL RRLFVKKVVS+KRML+NGSGI K LVDL
Sbjct: 179 VQECGTYYCPMQLFTLRALRRKCPLMLQLHWRRLFVKKVVSNKRMLQNGSGILKELVDL 3
Score = 176 bits (378), Expect = 4e-043
Identities = 84/120 (70%), Positives = 91/120 (75%)
Frame = -3 / +1
Query: 394 VKSTSPF*IPEPFRSIRXXXXXXXXXXXX*RSCNIGRHFRRRACNVDHCIGQ**VPQS*T 215
VKSTS F IPEPF SI SCNI HFRRRA NV++CIGQ**VP S*T
Sbjct: 1 VKSTSSFKIPEPF*SILLFDTTFFTNNLLQCSCNISGHFRRRARNVNNCIGQ**VPHS*T 180
Query: 214 LFLYLGLHVDLLRLIPGKSDEETTAPFRGQHPLILRMS*PEILV*KIVFLVSTAKKEQNR 35
+FLYL LH+DLLRLIPGKS++ TT FRGQHPLIL MS*PEILV*KIV LVSTAK+E NR
Sbjct: 181 MFLYLMLHIDLLRLIPGKSNK*TTTLFRGQHPLILGMS*PEILV*KIVILVSTAKEEHNR 360
>gb|CD230946.1|CD230946 SS1_7_E05.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_7_E05_A012 3', mRNA sequence
Length = 559
Score = 170 bits (366), Expect(4) = 7e-059
Identities = 73/77 (94%), Positives = 75/77 (97%)
Frame = -1 / -1
Query: 420 HHNYDHVSMLSLPALSRSLSHFEASACLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD 241
HHNYD VSMLSLPALSRSLSHFEAS+CLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD
Sbjct: 232 HHNYDQVSMLSLPALSRSLSHFEASSCLTPPSLQITSSSAAVTSAGIFVEEPAM*ITASD 53
Query: 240 SNKFHSLELCSFILGCT 190
SNKFH+LELCSFIL CT
Sbjct: 52 SNKFHTLELCSFILCCT 2
Score = 170 bits (365), Expect(4) = 8e-060
Identities = 73/77 (94%), Positives = 74/77 (96%)
Frame = +2 / +3
Query: 191 VQPKIKEQSSRLWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQADASKWLRD 370
VQ KIKE SSR+WNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQ DASKWLRD
Sbjct: 3 VQHKIKEHSSRVWNLLLSDAVIYIAGSSTKMPADVTAALEEVICKEGGVKQEDASKWLRD 182
Query: 371 LERAGRLNIETWS*L*W 421
LERAGRLNIETWS*L*W
Sbjct: 183 LERAGRLNIETWS*L*W 233
Score = 145 bits (312), Expect(3) = 5e-048
Identities = 62/81 (76%), Positives = 65/81 (80%)
Frame = +1 / +2
Query: 193 ATQDKGTEFKTVELITVRCSDLHCRLFDENACRCYSCARGGYL*RRWCQASGCFEMAQGS 372
AT DKGT FK+VELITVRCS LHC LFDENA CYSC GGYL*RRWCQ GCF+MAQGS
Sbjct: 5 AT*DKGT*FKSVELITVRCSYLHCGLFDENAR*CYSCTGGGYL*RRWCQTRGCFKMAQGS 184
Query: 373 RKGW*T*HRDMVIVVMGKKVH 435
K W*T*HRD+VIVVM H
Sbjct: 185 *KSW*T*HRDLVIVVMVSICH 247
Score = 140 bits (301), Expect(3) = 5e-044
Identities = 62/77 (80%), Positives = 66/77 (85%)
Frame = +3 / +1
Query: 192 CNPR*RNRVQDCGTYYCPMQ*STLQALRRKCLPMLQLR*RRLFVKKVVSSKRMLRNGSGI 371
CN R*RN VQ+CGTYYCPMQ TL+ALRRKC MLQL RRLFVKKVVS+KRML+NGSGI
Sbjct: 4 CNIR*RNIVQECGTYYCPMQLFTLRALRRKCPLMLQLHWRRLFVKKVVSNKRMLQNGSGI 183
Query: 372 *KGLVDLTSRHGHSCDG 422
K LVDLTSR GHSCDG
Sbjct: 184 LKELVDLTSRLGHSCDG 234
Score = 135 bits (289), Expect(4) = 2e-045
Identities = 61/76 (80%), Positives = 66/76 (86%)
Frame = -2 / -2
Query: 419 ITTMTMSRC*VYQPFLDP*AISKHPLA*HHLLYK*PPLAQL*HRQAFSSKSLQCRSLHRT 240
ITTMT SRC*VYQ F DP*AI KHPL *HHLLYK*PP QL*H++AFSSKS QC+ LHRT
Sbjct: 231 ITTMTKSRC*VYQLFQDP*AILKHPLV*HHLLYK*PPPVQL*HQRAFSSKSPQCK*LHRT 52
Query: 239 VISSTVLNSVPLSWVA 192
VISST+LN VPLS+VA
Sbjct: 51 VISSTLLNYVPLSYVA 4
Score = 103 bits (220), Expect(3) = 9e-034
Identities = 50/77 (64%), Positives = 53/77 (68%)
Frame = -3 / -3
Query: 421 PSQL*PCLDVKSTSPF*IPEPFRSIRXXXXXXXXXXXX*RSCNIGRHFRRRACNVDHCIG 242
PSQL*P LDVKSTS F IPEPF SI SCNI HFRRRA NV++CIG
Sbjct: 233 PSQL*PSLDVKSTSSFKIPEPF*SILLFDTTFFTNNLLQCSCNISGHFRRRARNVNNCIG 54
Query: 241 Q**VPQS*TLFLYLGLH 191
Q**VP S*T+FLYL LH
Sbjct: 53 Q**VPHS*TMFLYLMLH 3
Score = 51.5 bits (106), Expect(4) = 7e-059
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -1 / -3
Query: 534 RIGCFNIYTFPHFQCL*FTGKFSLV 460
RIGCF +Y FPHFQCL*FT FSLV
Sbjct: 371 RIGCFYMYKFPHFQCL*FTMTFSLV 297
Score = 46.0 bits (94), Expect(4) = 8e-060
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 523 ASNTEK*LEDDLNFPHLALCTKRHFV*L 606
++ EK*LEDDL FPHLAL T+ HF+*L
Sbjct: 363 SNTEEK*LEDDLTFPHLALSTECHFI*L 446
Score = 45.5 bits (93), Expect(4) = 2e-045
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -3 / -2
Query: 535 PYWML*HLHVSTFPMPLIYREIL 467
PYWML H+ +STF MPLIY +IL
Sbjct: 372 PYWMLLHVQISTFSMPLIYNDIL 304
Score = 44.6 bits (91), Expect(4) = 8e-060
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2 / +1
Query: 461 TSENFPVNQRHWKCGNV*MLKHPIRRNS 544
T EN VNQRH KCGN+ M KHPIR+ +
Sbjct: 298 TRENVIVNQRH*KCGNLYM*KHPIRKRN 381
Score = 43.2 bits (88), Expect(3) = 5e-048
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +1 / +3
Query: 469 EFPCKSKALEMWKRVDVKASNTEK 540
E CKSKAL+MWK V VKASNTE+
Sbjct: 306 ECHCKSKALKMWKFVHVKASNTEE 377
Score = 42.8 bits (87), Expect(3) = 9e-034
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = -2 / -1
Query: 554 SSSNYFSVLDALTSTRFHISNAFDLQGNS 468
SS+ + SVLDA T T FHI NAFDLQ +S
Sbjct: 391 SSNYFSSVLDAFTCTNFHIFNAFDLQ*HS 305
Score = 41.8 bits (85), Expect(3) = 5e-048
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2 / +1
Query: 533 RRNSWRMI*TFLI*PSVRNAISFD* 607
+RNS RMI* FLI*PS+RN ISFD*
Sbjct: 373 KRNS*RMI*HFLI*PSLRNVISFD* 447
Score = 41.8 bits (85), Expect(3) = 5e-044
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 468 RISL*IKGIGNVETCRC*SIQYG 536
R+SL*IKGI NVE C C SIQYG
Sbjct: 305 RMSL*IKGIENVEICTCKSIQYG 373
Score = 39.1 bits (79), Expect(4) = 2e-045
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -1 / -3
Query: 603 SNEMAFRTEG*MRKV*IILQLFL 535
SNEM FR EG*MRK *IIL LFL
Sbjct: 443 SNEMTFRREG*MRKC*IIL*LFL 375
Score = 39.1 bits (79), Expect(4) = 7e-059
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -2 / -1
Query: 608 LNQTKWRFVQRAK*GKFRSSSNYFS 534
LNQ K V+RAK*G RSSSNYFS
Sbjct: 448 LNQMK*HSVERAK*GNVRSSSNYFS 374
Score = 36.3 bits (73), Expect(3) = 9e-034
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -3 / -2
Query: 604 IKRNGVSYRGLNEESLDHPPTIS 536
IK N + RGLNEE LDHP TIS
Sbjct: 444 IK*NDIP*RGLNEEMLDHPLTIS 376
Score = 35.0 bits (70), Expect(3) = 5e-044
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +3 / +2
Query: 537 EIVGG*SKLSSFSPLYETPFRLI 605
EIV G*S +SSFSPLY F LI
Sbjct: 377 EIVRG*SNISSFSPLYGMSFHLI 445
Score = 28.1 bits (55), Expect(4) = 8e-060
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1 / +2
Query: 604 LSEPSNYISFCC 639
L E SNYISFCC
Sbjct: 440 LIEDSNYISFCC 475
Score = 24.4 bits (47), Expect(4) = 7e-059
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / -3
Query: 640 CNKS*CNY 617
CNKS*CNY
Sbjct: 476 CNKS*CNY 453
Score = 21.7 bits (41), Expect(4) = 2e-045
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / -2
Query: 641 LQQKLM*LLGSL 606
+QQKLM*LL S+
Sbjct: 477 MQQKLM*LLSSI 442
>gb|CW139830.1|CW139830 104_530_11135453_148_34918_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135453, DNA
sequence
Length = 716
Score = 106 bits (227), Expect = 3e-022
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2 / +2
Query: 38 VLFFFGCRNQENDFLYKDFWLTHAQDEGVLSSKRGGGFFVAFSR 169
V+FFFGCRNQ+NDFLYKDFWLTHAQDEGVLSSK+GGG FVAFSR
Sbjct: 557 VMFFFGCRNQDNDFLYKDFWLTHAQDEGVLSSKKGGGLFVAFSR 688
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 862,992,756
Number of Sequences: 832831
Number of extensions: 13229467
Number of successful extensions: 105324
Number of sequences better than 1.0e-020: 6
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19841884894
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)