TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2646712.2.1
(581 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX612381.1|CX612381 GABR1_2_D06.b1_A002 GA- or brassinol... 160 1e-038
gb|CD430959.1|CD430959 ETH1_6_A10.b1_A002 Ethylene-treated ... 160 1e-038
gb|CN138460.1|CN138460 OX1_64_A03.b1_A002 Oxidatively-stres... 149 4e-035
gb|AW678856.1|AW678856 WS1_1_A12.g1_A002 Water-stressed 1 (... 146 3e-034
gb|BE360762.1|BE360762 DG1_66_C04.g2_A002 Dark Grown 1 (DG1... 146 3e-034
gb|BE360923.1|BE360923 DG1_67_G03.g1_A002 Dark Grown 1 (DG1... 146 3e-034
gb|BE362142.1|BE362142 DG1_84_C11.g1_A002 Dark Grown 1 (DG1... 146 3e-034
gb|BE362152.1|BE362152 DG1_84_D11.g1_A002 Dark Grown 1 (DG1... 146 3e-034
gb|BM318321.1|BM318321 PI1_77_C02.g9_A002 Pathogen induced ... 146 3e-034
gb|CD228671.1|CD228671 CCC1_9_E11.b1_A007 Callus culture/ce... 146 3e-034
gb|CN129192.1|CN129192 RHOH1_34_B10.b3_A002 Acid- and alkal... 146 3e-034
gb|CN137446.1|CN137446 OX1_57_G07.b1_A002 Oxidatively-stres... 146 3e-034
gb|CX607016.1|CX607016 ANR1_6_E09.b1_A002 Anaerobic roots S... 146 3e-034
gb|CX608225.1|CX608225 ANR1_37_H09.b1_A002 Anaerobic roots ... 146 3e-034
gb|BG051912.1|BG051912 RHIZ2_6_E04.g1_A003 Rhizome2 (RHIZ2)... 142 4e-033
gb|CD430950.1|CD430950 ETH1_6_A08.b1_A002 Ethylene-treated ... 129 4e-029
gb|CN137561.1|CN137561 OX1_58_D03.b1_A002 Oxidatively-stres... 126 3e-028
gb|CX608520.1|CX608520 ANR1_39_C06.b1_A002 Anaerobic roots ... 116 3e-025
gb|CF070740.1|CF070740 FE1_4_B05.b1_A002 Iron-deficient see... 115 5e-025
gb|CW413255.1|CW413255 fsbb001f112e23f0 Sorghum methylation... 111 4e-024
gb|CW202632.1|CW202632 104_628_11185195_116_37086_066 Sorgh... 111 9e-024
gb|CB927052.1|CB927052 ABA1_13_F08.b1_A012 Abscisic acid-tr... 110 2e-023
gb|CN125480.1|CN125480 RHOH1_11_G11.b1_A002 Acid- and alkal... 110 2e-023
gb|CD210709.1|CD210709 HS1_49_C07.b1_A012 Heat-shocked seed... 104 1e-021
gb|CW317851.1|CW317851 104_809_11473636_148_35864_002 Sorgh... 77 2e-021
gb|BZ342273.1|BZ342273 ic81e11.b1 WGS-SbicolorF (JM107 adap... 77 2e-021
gb|CW408710.1|CW408710 fsbb001f102l13f0 Sorghum methylation... 77 2e-021
>gb|CX612381.1|CX612381 GABR1_2_D06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_2_D06_A002 3', mRNA sequence
Length = 636
Score = 160 bits (344), Expect(2) = 1e-038
Identities = 63/70 (90%), Positives = 68/70 (97%)
Frame = -1 / +1
Query: 551 AVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDT 372
AVLHREDVVRTLRK FP YPVPERCSDEVNPRKQPYKISNQ+LR+LGLEFTPAAQALYDT
Sbjct: 37 AVLHREDVVRTLRKFFPDYPVPERCSDEVNPRKQPYKISNQKLRDLGLEFTPAAQALYDT 216
Query: 371 VVCFQEKGIL 342
++CFQEKGI+
Sbjct: 217 IICFQEKGII 246
Score = 118 bits (253), Expect(3) = 5e-032
Identities = 47/56 (83%), Positives = 50/56 (89%)
Frame = +1 / -2
Query: 346 MPFSWKHTTVSYSACAAGVNSRPSSLSRWLEILYGCFLGFTSSEHLSGTG*PGKDL 513
MPFSWKH VSY ACAAGVNS+P SLS WL+ILYGCFLGFTSSEHLSGTG* GK+L
Sbjct: 242 MPFSWKHMMVSYRACAAGVNSKPKSLSFWLDILYGCFLGFTSSEHLSGTG*SGKNL 75
Score = 37.3 bits (75), Expect(3) = 5e-032
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +3 / -1
Query: 489 DGVAREGLAEGADDVLAVEH 548
DGV RE LAE DDVLAVEH
Sbjct: 99 DGVVREELAERPDDVLAVEH 40
Score = 22.1 bits (42), Expect(2) = 1e-038
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1 / +2
Query: 71 WSIVLRFCGYVV 36
WSI+L C Y V
Sbjct: 569 WSIILHLCDYDV 604
Score = 22.1 bits (42), Expect(3) = 5e-032
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2 / -2
Query: 41 HSHRNVGRYS 70
HSH NVG YS
Sbjct: 599 HSHTNVG*YS 570
>gb|CD430959.1|CD430959 ETH1_6_A10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_A10_A002 3', mRNA sequence
Length = 555
Score = 160 bits (345), Expect = 1e-038
Identities = 64/70 (91%), Positives = 68/70 (97%)
Frame = -1 / +1
Query: 551 AVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDT 372
AVLHREDVVRTLRK FP YPVPERCSDEVNPRKQPYKISNQ+LR+LGLEFTPAAQALYDT
Sbjct: 13 AVLHREDVVRTLRKFFPDYPVPERCSDEVNPRKQPYKISNQKLRDLGLEFTPAAQALYDT 192
Query: 371 VVCFQEKGIL 342
V+CFQEKGI+
Sbjct: 193 VICFQEKGII 222
Score = 121 bits (259), Expect(2) = 5e-032
Identities = 48/56 (85%), Positives = 51/56 (91%)
Frame = +1 / -2
Query: 346 MPFSWKHTTVSYSACAAGVNSRPSSLSRWLEILYGCFLGFTSSEHLSGTG*PGKDL 513
MPFSWKH TVSY ACAAGVNS+P SLS WL+ILYGCFLGFTSSEHLSGTG* GK+L
Sbjct: 218 MPFSWKHMTVSYRACAAGVNSKPKSLSFWLDILYGCFLGFTSSEHLSGTG*SGKNL 51
Score = 37.3 bits (75), Expect(2) = 5e-032
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = +3 / -1
Query: 489 DGVAREGLAEGADDVLAVEH 548
DGV RE LAE DDVLAVEH
Sbjct: 75 DGVVREELAERPDDVLAVEH 16
>gb|CN138460.1|CN138460 OX1_64_A03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_A03_A002 3', mRNA sequence
Length = 747
Score = 149 bits (319), Expect = 4e-035
Identities = 60/79 (75%), Positives = 67/79 (84%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVRTL K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 222 ASGRYLCAERVLHREDVVRTLAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 401
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 402 PVSQSLYDTVKNLQEKGHL 458
>gb|AW678856.1|AW678856 WS1_1_A12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 565
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 40 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 219
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 220 PVSQSLYDTVKNLQEKGHL 276
>gb|BE360762.1|BE360762 DG1_66_C04.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 67 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 246
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 247 PVSQSLYDTVKNLQEKGHL 303
>gb|BE360923.1|BE360923 DG1_67_G03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 642
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 142 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 321
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 322 PVSQSLYDTVKNLQEKGHL 378
>gb|BE362142.1|BE362142 DG1_84_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 196 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 375
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 376 PVSQSLYDTVKNLQEKGHL 432
>gb|BE362152.1|BE362152 DG1_84_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 175 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 354
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 355 PVSQSLYDTVKNLQEKGHL 411
>gb|BM318321.1|BM318321 PI1_77_C02.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 16 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 195
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 196 PVSQSLYDTVKNLQEKGHL 252
>gb|CD228671.1|CD228671 CCC1_9_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_9_E11_A007 3', mRNA sequence
Length = 535
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 12 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 191
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 192 PVSQSLYDTVKNLQEKGHL 248
>gb|CN129192.1|CN129192 RHOH1_34_B10.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_B10_A002 3', mRNA sequence
Length = 795
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 179 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 358
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 359 PVSQSLYDTVKNLQEKGHL 415
>gb|CN137446.1|CN137446 OX1_57_G07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_G07_A002 3', mRNA sequence
Length = 532
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 16 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 195
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 196 PVSQSLYDTVKNLQEKGHL 252
>gb|CX607016.1|CX607016 ANR1_6_E09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_E09_A002 3', mRNA sequence
Length = 667
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 143 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 322
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 323 PVSQSLYDTVKNLQEKGHL 379
>gb|CX608225.1|CX608225 ANR1_37_H09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_H09_A002 3', mRNA sequence
Length = 560
Score = 146 bits (313), Expect = 3e-034
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF
Sbjct: 36 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFR 215
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 216 PVSQSLYDTVKNLQEKGHL 272
>gb|BG051912.1|BG051912 RHIZ2_6_E04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 555
Score = 142 bits (305), Expect = 4e-033
Identities = 58/79 (73%), Positives = 65/79 (82%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVVR L K FP YPVP RCSDEVNPRKQ YK SNQ+LR+LGLEF
Sbjct: 59 ASGRYLCAERVLHREDVVRILAKLFPEYPVPTRCSDEVNPRKQAYKFSNQKLRDLGLEFR 238
Query: 398 PAAQALYDTVVCFQEKGIL 342
P +Q+LYDTV QEKG L
Sbjct: 239 PVSQSLYDTVKNLQEKGHL 295
>gb|CD430950.1|CD430950 ETH1_6_A08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_A08_A002 3', mRNA sequence
Length = 477
Score = 129 bits (276), Expect = 4e-029
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = -1 / +2
Query: 515 RKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RK FP YPVPERCSDEVNPRKQPYKISNQ+LR+LGLEFTPAAQAL DTV+CFQEKGI+
Sbjct: 2 RKFFPDYPVPERCSDEVNPRKQPYKISNQKLRDLGLEFTPAAQAL*DTVICFQEKGII 175
Score = 122 bits (260), Expect = 6e-027
Identities = 48/56 (85%), Positives = 51/56 (91%)
Frame = +1 / -1
Query: 346 MPFSWKHTTVSYSACAAGVNSRPSSLSRWLEILYGCFLGFTSSEHLSGTG*PGKDL 513
MPFSWKH TVSY ACAAGVNS+P SLS WL+ILYGCFLGFTSSEHLSGTG* GK+L
Sbjct: 171 MPFSWKHMTVSYKACAAGVNSKPKSLSFWLDILYGCFLGFTSSEHLSGTG*SGKNL 4
>gb|CN137561.1|CN137561 OX1_58_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_D03_A002 3', mRNA sequence
Length = 483
Score = 126 bits (270), Expect = 3e-028
Identities = 52/68 (76%), Positives = 56/68 (82%)
Frame = -1 / +1
Query: 545 LHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVV 366
LHREDVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF P +Q+LYDTV
Sbjct: 1 LHREDVVRILAKFFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFRPVSQSLYDTVK 180
Query: 365 CFQEKGIL 342
QEKG L
Sbjct: 181 NLQEKGHL 204
>gb|CX608520.1|CX608520 ANR1_39_C06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_C06_A002 3', mRNA sequence
Length = 491
Score = 116 bits (248), Expect = 3e-025
Identities = 48/64 (75%), Positives = 52/64 (81%)
Frame = -1 / +3
Query: 533 DVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQE 354
DVVR L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF P +Q+LYDTV QE
Sbjct: 3 DVVRILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFRPVSQSLYDTVKNLQE 182
Query: 353 KGIL 342
KG L
Sbjct: 183 KGHL 194
>gb|CF070740.1|CF070740 FE1_4_B05.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_4_B05_A002 3', mRNA sequence
Length = 503
Score = 115 bits (246), Expect = 5e-025
Identities = 45/79 (56%), Positives = 56/79 (70%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C VLHR +V LR FP YPV +C D+ P +PY+ SNQRLR+LGLEFT
Sbjct: 171 ARGRYLCIGTVLHRAQLVAMLRDLFPKYPVTAKCEDDGKPMVKPYRFSNQRLRDLGLEFT 350
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY+TVVC Q+KG L
Sbjct: 351 PLRESLYETVVCLQQKGHL 407
>gb|CW413255.1|CW413255 fsbb001f112e23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112e23, DNA
sequence
Length = 689
Score = 111 bits (237), Expect(2) = 4e-024
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = -1 / +3
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDEVNPRKQPYKISNQ+LR+LGLEFTPAAQALYDTV+CFQEKGI+
Sbjct: 84 RCSDEVNPRKQPYKISNQKLRDLGLEFTPAAQALYDTVICFQEKGII 224
Score = 104 bits (222), Expect(2) = 5e-022
Identities = 40/46 (86%), Positives = 42/46 (91%)
Frame = +1 / -2
Query: 346 MPFSWKHTTVSYSACAAGVNSRPSSLSRWLEILYGCFLGFTSSEHL 483
MPFSWKH TVSY ACAAGVNS+P SLS WL+ILYGCFLGFTSSEHL
Sbjct: 220 MPFSWKHMTVSYRACAAGVNSKPKSLSFWLDILYGCFLGFTSSEHL 83
Score = 22.1 bits (42), Expect(2) = 4e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1 / +1
Query: 71 WSIVLRFCGYVV 36
WSI+L C Y V
Sbjct: 547 WSIILHLCDYDV 582
Score = 22.1 bits (42), Expect(2) = 5e-022
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2 / -2
Query: 41 HSHRNVGRYS 70
HSH NVG YS
Sbjct: 577 HSHTNVG*YS 548
>gb|CW202632.1|CW202632 104_628_11185195_116_37086_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185195, DNA
sequence
Length = 716
Score = 111 bits (237), Expect = 9e-024
Identities = 43/47 (91%), Positives = 47/47 (100%)
Frame = -1 / +2
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDEVNPRKQPYKISNQ+LR+LGLEFTPAAQALYDTV+CFQEKGI+
Sbjct: 548 RCSDEVNPRKQPYKISNQKLRDLGLEFTPAAQALYDTVICFQEKGII 688
Score = 104 bits (222), Expect = 1e-021
Identities = 40/46 (86%), Positives = 42/46 (91%)
Frame = +1 / -3
Query: 346 MPFSWKHTTVSYSACAAGVNSRPSSLSRWLEILYGCFLGFTSSEHL 483
MPFSWKH TVSY ACAAGVNS+P SLS WL+ILYGCFLGFTSSEHL
Sbjct: 684 MPFSWKHMTVSYRACAAGVNSKPKSLSFWLDILYGCFLGFTSSEHL 547
>gb|CB927052.1|CB927052 ABA1_13_F08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_13_F08_A012 3', mRNA sequence
Length = 472
Score = 110 bits (234), Expect = 2e-023
Identities = 45/61 (73%), Positives = 49/61 (80%)
Frame = -1 / +3
Query: 524 RTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGI 345
R L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF P +Q+LYDTV QEKG
Sbjct: 3 RILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFRPVSQSLYDTVKNLQEKGH 182
Query: 344 L 342
L
Sbjct: 183 L 185
>gb|CN125480.1|CN125480 RHOH1_11_G11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_G11_A002 3', mRNA sequence
Length = 474
Score = 110 bits (234), Expect = 2e-023
Identities = 45/61 (73%), Positives = 49/61 (80%)
Frame = -1 / +3
Query: 524 RTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGI 345
R L K FP YPVP RCSDEVNPRKQPYK SNQ+LR+LGLEF P +Q+LYDTV QEKG
Sbjct: 3 RILAKLFPEYPVPTRCSDEVNPRKQPYKFSNQKLRDLGLEFRPVSQSLYDTVKNLQEKGH 182
Query: 344 L 342
L
Sbjct: 183 L 185
>gb|CD210709.1|CD210709 HS1_49_C07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_49_C07_A012 3', mRNA sequence
Length = 670
Score = 104 bits (222), Expect = 1e-021
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = -1 / +3
Query: 569 RYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAA 390
RY+CA+ LHR ++ R L FP YP+P RC D+VNP K+ YK +NQ L++LG++FTP
Sbjct: 270 RYVCAERTLHRGELCRILAGLFPEYPIPTRCKDQVNPPKKGYKFTNQPLKDLGIKFTPVH 449
Query: 389 QALYDTVVCFQEKGIL 342
+ LY+ V QEKG L
Sbjct: 450 EYLYEAVKSLQEKGFL 497
>gb|CW317851.1|CW317851 104_809_11473636_148_35864_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473636, DNA
sequence
Length = 745
Score = 77.1 bits (162), Expect(2) = 2e-021
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = -1 / -1
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RC D+ P +P+K SNQRLR+LGLEFTP ++LY+TVVC Q+KG L
Sbjct: 259 RCEDDGKPMAKPFKFSNQRLRDLGLEFTPLRKSLYETVVCLQQKGHL 119
Score = 46.0 bits (94), Expect(2) = 2e-021
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -1 / -1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPV 489
A GRY+C VLHRE +V L++ FP YPV
Sbjct: 466 ACGRYLCIGTVLHREQLVAMLKELFPQYPV 377
>gb|BZ342273.1|BZ342273 ic81e11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic81e11 5', DNA sequence
Length = 605
Score = 77.1 bits (162), Expect(2) = 2e-021
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = -1 / -1
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RC D+ P +P+K SNQRLR+LGLEFTP ++LY+TVVC Q+KG L
Sbjct: 386 RCEDDGKPMAKPFKFSNQRLRDLGLEFTPLRKSLYETVVCLQQKGHL 246
Score = 46.0 bits (94), Expect(2) = 2e-021
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -1 / -1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPV 489
A GRY+C VLHRE +V L++ FP YPV
Sbjct: 593 ACGRYLCIGTVLHREQLVAMLKELFPQYPV 504
>gb|CW408710.1|CW408710 fsbb001f102l13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102l13, DNA
sequence
Length = 577
Score = 77.1 bits (162), Expect(2) = 2e-021
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = -1 / -3
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RC D+ P +P+K SNQRLR+LGLEFTP ++LY+TVVC Q+KG L
Sbjct: 356 RCEDDGKPMAKPFKFSNQRLRDLGLEFTPLRKSLYETVVCLQQKGHL 216
Score = 46.0 bits (94), Expect(2) = 2e-021
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPV 489
A GRY+C VLHRE +V L++ FP YPV
Sbjct: 563 ACGRYLCIGTVLHREQLVAMLKELFPQYPV 474
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 600,612,526
Number of Sequences: 832831
Number of extensions: 8665076
Number of successful extensions: 122718
Number of sequences better than 1.0e-020: 28
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16750511820
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)