TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623051.2.1
(991 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN123943.1|CN123943 RHOH1_1_D12.g1_A002 Acid- and alkali... 145 2e-053
gb|CN140768.1|CN140768 OX1_46_H12.g1_A002 Oxidatively-stres... 145 2e-053
gb|CN123855.1|CN123855 RHOH1_1_D12.b1_A002 Acid- and alkali... 145 3e-046
gb|CN146978.1|CN146978 WOUND1_46_C04.b1_A002 Wounded leaves... 124 4e-040
gb|CX606564.1|CX606564 ANR1_3_F03.g1_A002 Anaerobic roots S... 115 4e-040
gb|CN147029.1|CN147029 WOUND1_46_C04.g1_A002 Wounded leaves... 124 6e-040
gb|BG560269.1|BG560269 RHIZ2_72_B09.b1_A003 Rhizome2 (RHIZ2... 95 3e-039
gb|CD430993.1|CD430993 ETH1_6_F10.b1_A002 Ethylene-treated ... 143 1e-038
gb|CW429387.1|CW429387 fsbb001f142j21k0 Sorghum methylation... 79 2e-036
gb|BG158327.1|BG158327 EM1_12_H04.b1_A002 Embryo 1 (EM1) So... 129 3e-035
gb|CW198874.1|CW198874 104_623_11183207_116_36840_084 Sorgh... 124 2e-032
gb|CW082645.1|CW082645 104_424_10943914_114_32383_033 Sorgh... 124 2e-032
gb|CF756527.1|CF756527 DSAF1_6_C12.b1_A011 Drought-stressed... 115 9e-032
gb|CX606473.1|CX606473 ANR1_3_F03.b1_A002 Anaerobic roots S... 115 3e-031
gb|CF486168.1|CF486168 POL1_36_D06.b1_A002 Pollen Sorghum b... 123 3e-031
gb|CL197703.1|CL197703 104_424_10943914_114_32334_033 Sorgh... 124 3e-030
gb|CW302565.1|CW302565 104_786_11464786_116_35665_035 Sorgh... 116 2e-027
gb|CW282567.1|CW282567 104_758_11408780_116_35468_070 Sorgh... 110 2e-025
gb|CW271545.1|CW271545 104_743_11403054_148_35345_019 Sorgh... 116 4e-025
gb|CN140707.1|CN140707 OX1_46_H12.b1_A002 Oxidatively-stres... 116 5e-025
gb|CF756608.1|CF756608 DSAF1_6_C12.g1_A011 Drought-stressed... 115 1e-024
gb|BZ334682.1|BZ334682 hx80h06.g1 WGS-SbicolorF (JM107 adap... 67 3e-024
gb|CW433996.1|CW433996 fsbb001f149h18k0 Sorghum methylation... 78 2e-023
gb|CW163093.1|CW163093 104_570_11151283_116_36445_070 Sorgh... 78 3e-023
gb|CW082012.1|CW082012 104_422_10943045_114_32316_021 Sorgh... 48 6e-023
gb|CW177734.1|CW177734 104_591_11159186_148_36609_011 Sorgh... 61 8e-023
gb|CF483095.1|CF483095 POL1_11_F04.b1_A002 Pollen Sorghum b... 108 1e-022
gb|CW056974.1|CW056974 104_298_10517969_115_30157 Sorghum m... 63 2e-022
gb|CW188122.1|CW188122 104_607_11172854_116_36728_051 Sorgh... 91 2e-022
gb|CW467089.1|CW467089 fsbb001f218k03k0 Sorghum methylation... 107 2e-022
gb|CW163094.1|CW163094 104_570_11151283_148_36446_070 Sorgh... 67 5e-021
gb|CW243252.1|CW243252 104_703_11219878_148_37569_087 Sorgh... 57 5e-021
gb|CW429386.1|CW429386 fsbb001f142j21f0 Sorghum methylation... 67 5e-021
gb|CW101251.1|CW101251 104_469_11004541_116_34404_063 Sorgh... 67 5e-021
>gb|CN123943.1|CN123943 RHOH1_1_D12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D12_A002 5', mRNA sequence
Length = 721
Score = 145 bits (311), Expect(2) = 2e-053
Identities = 57/80 (71%), Positives = 71/80 (88%)
Frame = -2 / +3
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
D ++ V+LIITDYCMPGMTGYDLL ++K SSSL DIPVVIMSSEN+P+RI+RCL++GA+
Sbjct: 351 DQLDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGAD 530
Query: 516 EFFLKPVKPADMKKLKSHLL 457
EFFLKPV+ +DM KLK H+L
Sbjct: 531 EFFLKPVRLSDMNKLKPHIL 590
Score = 122 bits (260), Expect(2) = 1e-035
Identities = 54/81 (66%), Positives = 62/81 (76%)
Frame = +2 / -1
Query: 455 FSRCDLSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSY 634
FS LS FMS TGFRKNSSAPS +HLLI G FS+DMITTG+S+ D+D +SRSY
Sbjct: 592 FSMWGLSLFMSDSRTGFRKNSSAPSSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSY 413
Query: 635 PVMPGMQ*SVMMRLTSIS*WS 697
PVMPGMQ*SVM+R T+ S WS
Sbjct: 412 PVMPGMQ*SVMIRFTATSSWS 350
Score = 85.8 bits (181), Expect(2) = 2e-053
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = -2 / +3
Query: 933 LRSPAMTVLDAESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
+ + A + E+ FHVLAVDDS+ DRKLIE LLK+SS+QVTTVDSG+KAL+ LGL D+
Sbjct: 150 MAAAAAAAVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDD 326
Score = 83.1 bits (175), Expect(2) = 1e-020
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = +1 / -3
Query: 508 EELLRAILQAPADPGRHVLRRHDHHRNVRER*GPLHSREQIVSCHAGHAVVSDDETH 678
E+L+ + LQAP DP R+VLR HDHH ++ ER L EQ++SCHAGHAVV DD+ H
Sbjct: 539 EKLISSFLQAPIDP*RNVLRGHDHHWDISERRRLLDLLEQVISCHAGHAVVCDDQVH 369
Score = 49.6 bits (102), Expect(2) = 1e-035
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = +1 / -3
Query: 799 IHRGHLVRRALEQHLDELPVDDAVVHRQDMEPRL 900
+ GHL R LE+ LDELPV + VVHRQDME L
Sbjct: 284 VDSGHLEGRGLEEPLDELPVRETVVHRQDMERSL 183
Score = 38.6 bits (78), Expect(2) = 1e-020
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2 / -1
Query: 794 PESTVVTW*DEXXXXXXXXXXXXXXXXTARTWNRDSASSTVMA 922
PESTVVTW +E TARTWN S ++ A
Sbjct: 289 PESTVVTWKEEVLRSLSMSFLSGRLSSTARTWNGVSVATAAAA 161
>gb|CN140768.1|CN140768 OX1_46_H12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_H12_A002 5', mRNA sequence
Length = 708
Score = 145 bits (311), Expect(2) = 2e-053
Identities = 57/80 (71%), Positives = 71/80 (88%)
Frame = -2 / +3
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
D ++ V+LIITDYCMPGMTGYDLL ++K SSSL DIPVVIMSSEN+P+RI+RCL++GA+
Sbjct: 303 DQLDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGAD 482
Query: 516 EFFLKPVKPADMKKLKSHLL 457
EFFLKPV+ +DM KLK H+L
Sbjct: 483 EFFLKPVRLSDMNKLKPHIL 542
Score = 122 bits (260), Expect(2) = 1e-035
Identities = 54/81 (66%), Positives = 62/81 (76%)
Frame = +2 / -3
Query: 455 FSRCDLSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSY 634
FS LS FMS TGFRKNSSAPS +HLLI G FS+DMITTG+S+ D+D +SRSY
Sbjct: 544 FSMWGLSLFMSDSRTGFRKNSSAPSSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSY 365
Query: 635 PVMPGMQ*SVMMRLTSIS*WS 697
PVMPGMQ*SVM+R T+ S WS
Sbjct: 364 PVMPGMQ*SVMIRFTATSSWS 302
Score = 85.8 bits (181), Expect(2) = 2e-053
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = -2 / +3
Query: 933 LRSPAMTVLDAESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
+ + A + E+ FHVLAVDDS+ DRKLIE LLK+SS+QVTTVDSG+KAL+ LGL D+
Sbjct: 102 MAAAAAAAVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDD 278
Score = 83.1 bits (175), Expect(2) = 1e-020
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = +1 / -2
Query: 508 EELLRAILQAPADPGRHVLRRHDHHRNVRER*GPLHSREQIVSCHAGHAVVSDDETH 678
E+L+ + LQAP DP R+VLR HDHH ++ ER L EQ++SCHAGHAVV DD+ H
Sbjct: 491 EKLISSFLQAPIDP*RNVLRGHDHHWDISERRRLLDLLEQVISCHAGHAVVCDDQVH 321
Score = 49.6 bits (102), Expect(2) = 1e-035
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = +1 / -2
Query: 799 IHRGHLVRRALEQHLDELPVDDAVVHRQDMEPRL 900
+ GHL R LE+ LDELPV + VVHRQDME L
Sbjct: 236 VDSGHLEGRGLEEPLDELPVRETVVHRQDMERSL 135
Score = 38.6 bits (78), Expect(2) = 1e-020
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2 / -3
Query: 794 PESTVVTW*DEXXXXXXXXXXXXXXXXTARTWNRDSASSTVMA 922
PESTVVTW +E TARTWN S ++ A
Sbjct: 241 PESTVVTWKEEVLRSLSMSFLSGRLSSTARTWNGVSVATAAAA 113
>gb|CN123855.1|CN123855 RHOH1_1_D12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D12_A002 3', mRNA sequence
Length = 695
Score = 145 bits (311), Expect(2) = 3e-046
Identities = 57/80 (71%), Positives = 71/80 (88%)
Frame = -2 / +2
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
D ++ V+LIITDYCMPGMTGYDLL ++K SSSL DIPVVIMSSEN+P+RI+RCL++GA+
Sbjct: 134 DQLDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGAD 313
Query: 516 EFFLKPVKPADMKKLKSHLL 457
EFFLKPV+ +DM KLK H+L
Sbjct: 314 EFFLKPVRLSDMNKLKPHIL 373
Score = 122 bits (260), Expect(2) = 1e-029
Identities = 54/81 (66%), Positives = 62/81 (76%)
Frame = +2 / -3
Query: 455 FSRCDLSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSY 634
FS LS FMS TGFRKNSSAPS +HLLI G FS+DMITTG+S+ D+D +SRSY
Sbjct: 375 FSMWGLSLFMSDSRTGFRKNSSAPSSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSY 196
Query: 635 PVMPGMQ*SVMMRLTSIS*WS 697
PVMPGMQ*SVM+R T+ S WS
Sbjct: 195 PVMPGMQ*SVMIRFTATSSWS 133
Score = 62.0 bits (129), Expect(2) = 3e-046
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = -2 / +2
Query: 858 DRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
DRKLIE LLK+SS+QVTTVDSG+KAL+ LGL D+
Sbjct: 8 DRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDD 109
Score = 29.9 bits (59), Expect(2) = 1e-029
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1 / -2
Query: 799 IHRGHLVRRALEQHLDELPV 858
+ GHL R LE+ LDELPV
Sbjct: 67 VDSGHLEGRGLEEPLDELPV 8
>gb|CN146978.1|CN146978 WOUND1_46_C04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_C04_A002 3', mRNA sequence
Length = 759
Score = 124 bits (266), Expect(2) = 4e-040
Identities = 50/74 (67%), Positives = 63/74 (85%)
Frame = -2 / +2
Query: 681 DVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLK 502
DV++IITDY MPGMTGY+LL VK SS L +IPVVIMSSENVP RI+RCL++GAE+F LK
Sbjct: 236 DVNMIITDYWMPGMTGYELLKHVKESSELREIPVVIMSSENVPTRITRCLEEGAEDFLLK 415
Query: 501 PVKPADMKKLKSHL 460
PV+P+D+ +L S +
Sbjct: 416 PVRPSDVSRLCSRI 457
Score = 62.0 bits (129), Expect(2) = 4e-040
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = -2 / +2
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGL 766
HVLAVDDS +DR +I +L+SS Y+VTTV+S +ALELL L
Sbjct: 101 HVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLAL 223
>gb|CX606564.1|CX606564 ANR1_3_F03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_F03_A002 5', mRNA sequence
Length = 746
Score = 115 bits (245), Expect(2) = 4e-040
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = -2 / +3
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V +IITDYCMP M+GY+LL RVK S+ L +IPVV+MSSEN P RI RCL++GAEEF +KP
Sbjct: 174 VHMIITDYCMPEMSGYELLKRVKESAELREIPVVLMSSENSPTRIRRCLEEGAEEFLIKP 353
Query: 498 VKPADMKKLKSHLL 457
V+ +D+ +L S L+
Sbjct: 354 VRASDVSRLCSRLV 395
Score = 71.6 bits (150), Expect(2) = 4e-040
Identities = 30/44 (68%), Positives = 37/44 (84%)
Frame = -2 / +3
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
HVLAVDDSI+DR +I LL+SS Y+VTTVDSG +ALE+L L D+
Sbjct: 42 HVLAVDDSIVDRAVISRLLRSSKYRVTTVDSGKRALEVLSLDDS 173
>gb|CN147029.1|CN147029 WOUND1_46_C04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_C04_A002 5', mRNA sequence
Length = 771
Score = 124 bits (266), Expect(2) = 6e-040
Identities = 50/74 (67%), Positives = 63/74 (85%)
Frame = -2 / +1
Query: 681 DVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLK 502
DV++IITDY MPGMTGY+LL VK SS L +IPVVIMSSENVP RI+RCL++GAE+F LK
Sbjct: 433 DVNMIITDYWMPGMTGYELLKHVKESSELREIPVVIMSSENVPTRITRCLEEGAEDFLLK 612
Query: 501 PVKPADMKKLKSHL 460
PV+P+D+ +L S +
Sbjct: 613 PVRPSDVSRLCSRI 654
Score = 61.6 bits (128), Expect(2) = 6e-040
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = -2 / +1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGL 766
HVLAVDDS +DR ++ +L+SS Y+VTTV+S +ALELL L
Sbjct: 298 HVLAVDDSSVDRAVVAKILRSSKYRVTTVESATRALELLAL 420
>gb|BG560269.1|BG560269 RHIZ2_72_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 552
Score = 95.5 bits (202), Expect(3) = 3e-039
Identities = 43/66 (65%), Positives = 53/66 (80%)
Frame = -2 / +1
Query: 948 ACSTYLRSPAMTVLDAESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLG 769
A S+ L PAM V+ E+ FHVLAVDDS+ DRKLIE LLK+SS+QVTTVDSG+KAL+ LG
Sbjct: 169 AGSSCLPLPAMAVVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLG 348
Query: 768 LRDNGA 751
+ D+ A
Sbjct: 349 IHDDDA 366
Score = 67.5 bits (141), Expect(3) = 5e-026
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = +1 / -1
Query: 799 IHRGHLVRRALEQHLDELPVDDAVVHRQDMEPRLGVQHRHGW 924
I G+L R LE+ LDELPV +AVVH QDME RLG HRHGW
Sbjct: 318 IDSGYLEGRGLEEPLDELPVREAVVHGQDMERRLGGHHRHGW 193
Score = 56.5 bits (117), Expect(3) = 3e-039
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = -2 / +1
Query: 687 EIDVSLIITDYCMPGMTGYDLLTRVKGSSS 598
++ V+LIITDYCMPGMTGYDLL ++K SS
Sbjct: 397 DVAVNLIITDYCMPGMTGYDLLKKIKQESS 486
Score = 50.1 bits (103), Expect(3) = 3e-039
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -2 / +1
Query: 606 SSSLTDIPVVIMSSENVPARISRC 535
SSSL DIPVVIMSSEN+P+RI+RC
Sbjct: 481 SSSLRDIPVVIMSSENIPSRINRC 552
Score = 46.4 bits (95), Expect(3) = 5e-026
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2 / -2
Query: 623 SRSYPVMPGMQ*SVMMRLTSIS*W 694
SRSYPVMPGMQ*SVM+R T+ S W
Sbjct: 461 SRSYPVMPGMQ*SVMIRFTATSSW 390
Score = 43.2 bits (88), Expect(3) = 5e-026
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2 / -2
Query: 536 HLLIRAGTFSDDMITTGMSVSDED 607
HLLI G FSDDMITTG+S+ D+D
Sbjct: 551 HLLILEGMFSDDMITTGISLRDDD 480
>gb|CD430993.1|CD430993 ETH1_6_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_F10_A002 3', mRNA sequence
Length = 713
Score = 143 bits (307), Expect(2) = 1e-038
Identities = 56/77 (72%), Positives = 70/77 (90%)
Frame = -2 / +1
Query: 687 EIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFF 508
++ V+LIITDYCMPGMTGYDLL ++K SSSL DIPVVIMSSEN+P+RI+RCL++GA+EFF
Sbjct: 97 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFF 276
Query: 507 LKPVKPADMKKLKSHLL 457
LKPV+ +DM KLK H+L
Sbjct: 277 LKPVRLSDMSKLKPHIL 327
Score = 118 bits (252), Expect = 2e-025
Identities = 53/80 (66%), Positives = 59/80 (73%)
Frame = +2 / -1
Query: 455 FSRCDLSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSY 634
FS LS MS TGFRKNSSAPS +HLLI G FSDDMITTG+S+ D+D SRSY
Sbjct: 329 FSMWGLSLLMSDSRTGFRKNSSAPSSRHLLILEGMFSDDMITTGISLRDDDSLIFFSRSY 150
Query: 635 PVMPGMQ*SVMMRLTSIS*W 694
PVMPGMQ*SVM+R T+ S W
Sbjct: 149 PVMPGMQ*SVMIRFTATSSW 90
Score = 38.2 bits (77), Expect(2) = 1e-038
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -2 / +1
Query: 816 QVTTVDSGNKALELLGLRDNGA 751
QVTTVDSG+KAL+ LG+ D+ A
Sbjct: 1 QVTTVDSGSKALQFLGIHDDDA 66
>gb|CW429387.1|CW429387 fsbb001f142j21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142j21, DNA
sequence
Length = 665
Score = 79.4 bits (167), Expect(2) = 4e-024
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +1 / -1
Query: 814 LVRRALEQHLDELPVDDAVVHRQDMEPRLGVQHRHG 921
LV R LE+HLDELPVDDAVVHR+DMEPRLG+ HRHG
Sbjct: 113 LVGRVLEEHLDELPVDDAVVHREDMEPRLGIHHRHG 6
Score = 78.0 bits (164), Expect(3) = 2e-036
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = -2 / +3
Query: 921 AMTVLDAESRFHVLAVDDSIIDRKLIEMLLKSSSYQ 814
AMTV+DAESRFHVLAVDDSI+DRKLIEMLLK+SSYQ
Sbjct: 6 AMTVVDAESRFHVLAVDDSIVDRKLIEMLLKNSSYQ 113
Score = 76.7 bits (161), Expect(3) = 1e-025
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = -1 / +2
Query: 919 HDGAGRRVAVPCPGGGRQHHRQEAHRDAAQELVLP 815
HDG G RVAVPCP GGRQH RQEAHRDA QELVLP
Sbjct: 8 HDGGGCRVAVPCPRGGRQHRRQEAHRDAPQELVLP 112
Score = 63.4 bits (132), Expect(3) = 2e-036
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = -2 / +3
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVK 610
QEIDV+LIITDYCMPGMTGYDLL RVK
Sbjct: 513 QEIDVNLIITDYCMPGMTGYDLLKRVK 593
Score = 56.1 bits (116), Expect(2) = 4e-024
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +1 / -1
Query: 610 LHSREQIVSCHAGHAVVSDDETHVDLL 690
LH EQIVSCHA HAVVSDDE HVDLL
Sbjct: 593 LHPLEQIVSCHAWHAVVSDDEIHVDLL 513
Score = 54.7 bits (113), Expect(3) = 2e-036
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = -2 / +1
Query: 813 VTTVDSGNKALELLGLRDNGAEDA 742
VTTVDSG+KALELLGLRDNGAEDA
Sbjct: 292 VTTVDSGSKALELLGLRDNGAEDA 363
Score = 53.3 bits (110), Expect(3) = 1e-025
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 815 K*PRWIPGTRRWSCWG*GTT 756
+*PRWIPG RRWSCWG*GTT
Sbjct: 290 Q*PRWIPGARRWSCWG*GTT 349
Score = 29.9 bits (59), Expect(3) = 1e-025
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / +1
Query: 653 ACPA*QDTICSRE*R 609
AC A*QDTICSR *R
Sbjct: 550 ACQA*QDTICSRG*R 594
>gb|BG158327.1|BG158327 EM1_12_H04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 443
Score = 129 bits (277), Expect(2) = 3e-035
Identities = 56/60 (93%), Positives = 60/60 (100%)
Frame = -2 / +1
Query: 921 AMTVLDAESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDNGAEDA 742
AMTV+DAESRFHVLAVDDSI+DRKLIEMLLK+SSYQVTTVDSG+KALELLGLRDNGAEDA
Sbjct: 190 AMTVVDAESRFHVLAVDDSIVDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDNGAEDA 369
Score = 98.7 bits (209), Expect(2) = 4e-025
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = +1 / -3
Query: 799 IHRGHLVRRALEQHLDELPVDDAVVHRQDMEPRLGVQHRHGWGAEVGRAGR 951
IHRGHLV R LE+HLDELPVDDAVVHR+DMEPRLG+ HRHG G GR
Sbjct: 312 IHRGHLVGRVLEEHLDELPVDDAVVHREDMEPRLGIHHRHGGVGRTGTGGR 160
Score = 40.9 bits (83), Expect(2) = 3e-035
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -2 / +1
Query: 696 DHQEIDVSLIITDYCM 649
DHQEIDV+LIITDYCM
Sbjct: 394 DHQEIDVNLIITDYCM 441
Score = 37.7 bits (76), Expect(2) = 4e-025
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +3 / -2
Query: 648 ACSSQ***DSRRSPDGQG 701
ACSSQ***DSRRSP GQG
Sbjct: 442 ACSSQ***DSRRSPGGQG 389
>gb|CW198874.1|CW198874 104_623_11183207_116_36840_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183207, DNA
sequence
Length = 686
Score = 124 bits (266), Expect(2) = 2e-032
Identities = 50/74 (67%), Positives = 63/74 (85%)
Frame = -2 / -3
Query: 681 DVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLK 502
DV++IITDY MPGMTGY+LL VK SS L +IPVVIMSSENVP RI+RCL++GAE+F LK
Sbjct: 360 DVNMIITDYWMPGMTGYELLKHVKESSELREIPVVIMSSENVPTRITRCLEEGAEDFLLK 181
Query: 501 PVKPADMKKLKSHL 460
PV+P+D+ +L S +
Sbjct: 180 PVRPSDVSRLCSRI 139
Score = 38.6 bits (78), Expect(2) = 2e-032
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -2 / -3
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQ 814
HVLAVDDS +DR +I +L+SS Y+
Sbjct: 621 HVLAVDDSSVDRAVIAKILRSSKYR 547
>gb|CW082645.1|CW082645 104_424_10943914_114_32383_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943914, DNA
sequence
Length = 712
Score = 124 bits (266), Expect(2) = 2e-032
Identities = 50/74 (67%), Positives = 63/74 (85%)
Frame = -2 / -3
Query: 681 DVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLK 502
DV++IITDY MPGMTGY+LL VK SS L +IPVVIMSSENVP RI+RCL++GAE+F LK
Sbjct: 401 DVNMIITDYWMPGMTGYELLKHVKESSELREIPVVIMSSENVPTRITRCLEEGAEDFLLK 222
Query: 501 PVKPADMKKLKSHL 460
PV+P+D+ +L S +
Sbjct: 221 PVRPSDVSRLCSRI 180
Score = 38.6 bits (78), Expect(2) = 2e-032
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -2 / -3
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQ 814
HVLAVDDS +DR +I +L+SS Y+
Sbjct: 662 HVLAVDDSSVDRAVIAKILRSSKYR 588
>gb|CF756527.1|CF756527 DSAF1_6_C12.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_C12_A011 5', mRNA sequence
Length = 515
Score = 115 bits (245), Expect(2) = 9e-032
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = -2 / +2
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V +IITDYCMP M+GY+LL RVK S+ L +IPVV+MSSEN P RI RCL++GAEEF +KP
Sbjct: 89 VHMIITDYCMPEMSGYELLKRVKESAELREIPVVLMSSENSPTRIRRCLEEGAEEFLIKP 268
Query: 498 VKPADMKKLKSHLL 457
V+ +D+ +L S L+
Sbjct: 269 VRASDVSRLCSRLV 310
Score = 43.7 bits (89), Expect(2) = 9e-032
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = -2 / +2
Query: 837 LLKSSSYQVTTVDSGNKALELLGLRDN 757
LL+SS Y+VTTVDSG +ALE+L L D+
Sbjct: 8 LLRSSKYRVTTVDSGKRALEVLSLDDS 88
>gb|CX606473.1|CX606473 ANR1_3_F03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_F03_A002 3', mRNA sequence
Length = 667
Score = 115 bits (245), Expect(2) = 3e-031
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = -2 / +1
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V +IITDYCMP M+GY+LL RVK S+ L +IPVV+MSSEN P RI RCL++GAEEF +KP
Sbjct: 94 VHMIITDYCMPEMSGYELLKRVKESAELREIPVVLMSSENSPTRIRRCLEEGAEEFLIKP 273
Query: 498 VKPADMKKLKSHLL 457
V+ +D+ +L S L+
Sbjct: 274 VRASDVSRLCSRLV 315
Score = 41.8 bits (85), Expect(2) = 3e-031
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -2 / +1
Query: 849 LIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
+I LL SS Y+VTTVDSG +ALE+ L D+
Sbjct: 1 VISRLLGSSKYRVTTVDSGKRALEVFSLDDS 93
>gb|CF486168.1|CF486168 POL1_36_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_D06_A002 3', mRNA sequence
Length = 618
Score = 123 bits (263), Expect(2) = 3e-031
Identities = 50/77 (64%), Positives = 64/77 (83%)
Frame = -2 / +3
Query: 687 EIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFF 508
E +VS+IITDY MP MTGYDLL +VK SS L IPVVIMSSENVP RI+RCL++GAE+F
Sbjct: 60 EPNVSMIITDYWMPEMTGYDLLKKVKESSKLKQIPVVIMSSENVPTRITRCLEEGAEDFL 239
Query: 507 LKPVKPADMKKLKSHLL 457
LKPV+P+D+ ++ + +L
Sbjct: 240 LKPVRPSDISRITTRIL 290
Score = 33.6 bits (67), Expect(2) = 3e-031
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -2 / +3
Query: 819 YQVTTVDSGNKALELLGLRDN 757
Y+VT VDSG +ALE+LG N
Sbjct: 6 YRVTAVDSGKRALEILGSEPN 68
>gb|CL197703.1|CL197703 104_424_10943914_114_32334_033 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943914, DNA
sequence
Length = 621
Score = 124 bits (266), Expect(2) = 3e-030
Identities = 50/74 (67%), Positives = 63/74 (85%)
Frame = -2 / -1
Query: 681 DVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLK 502
DV++IITDY MPGMTGY+LL VK SS L +IPVVIMSSENVP RI+RCL++GAE+F LK
Sbjct: 402 DVNMIITDYWMPGMTGYELLKHVKESSELREIPVVIMSSENVPTRITRCLEEGAEDFLLK 223
Query: 501 PVKPADMKKLKSHL 460
PV+P+D+ +L S +
Sbjct: 222 PVRPSDVSRLCSRI 181
Score = 29.0 bits (57), Expect(2) = 3e-030
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2 / -1
Query: 843 EMLLKSSSYQVTTVDSGNKALELLGL 766
++ + S+ + VTTV+S +ALELL L
Sbjct: 492 KLTVVSNLFAVTTVESATRALELLAL 415
>gb|CW302565.1|CW302565 104_786_11464786_116_35665_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464786, DNA
sequence
Length = 656
Score = 116 bits (249), Expect(2) = 2e-027
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +1
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEF 511
Q+ V +IITDYCMP M+GY+LL RVK S+ L +IPVV+MSSEN P RI RCL++GAEEF
Sbjct: 280 QDDSVHMIITDYCMPEMSGYELLKRVKESAELREIPVVLMSSENSPTRIRRCLEEGAEEF 459
Query: 510 FLKPVKPADMKKLKSHLL 457
+KPV+ +D+ +L S L+
Sbjct: 460 LIKPVRASDVSRLCSRLV 513
Score = 29.5 bits (58), Expect(2) = 2e-027
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / +3
Query: 813 VTTVDSGNKALELLGL 766
VTTVDSG +ALE+L L
Sbjct: 75 VTTVDSGKRALEVLSL 122
>gb|CW282567.1|CW282567 104_758_11408780_116_35468_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408780, DNA
sequence
Length = 491
Score = 110 bits (234), Expect(2) = 2e-025
Identities = 44/73 (60%), Positives = 58/73 (79%)
Frame = -2 / +3
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEF 511
Q+ V +IITDYCMP M+GY+LL RVK S+ L +IPVV+MSSEN P RI RCL++GAEEF
Sbjct: 273 QDDSVHMIITDYCMPEMSGYELLKRVKESAELREIPVVLMSSENSPTRIRRCLEEGAEEF 452
Query: 510 FLKPVKPADMKKL 472
+KPV+ + + +L
Sbjct: 453 LIKPVRASYVSRL 491
Score = 29.5 bits (58), Expect(2) = 2e-025
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / +2
Query: 813 VTTVDSGNKALELLGL 766
VTTVDSG +ALE+L L
Sbjct: 68 VTTVDSGKRALEVLSL 115
>gb|CW271545.1|CW271545 104_743_11403054_148_35345_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403054, DNA
sequence
Length = 641
Score = 116 bits (249), Expect = 4e-025
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +1
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEF 511
Q+ V +IITDYCMP M+GY+LL RVK S+ L +IPVV+MSSEN P RI RCL++GAEEF
Sbjct: 43 QDDSVHMIITDYCMPEMSGYELLKRVKESAELREIPVVLMSSENSPTRIRRCLEEGAEEF 222
Query: 510 FLKPVKPADMKKLKSHLL 457
+KPV+ +D+ +L S L+
Sbjct: 223 LIKPVRASDVSRLCSRLV 276
>gb|CN140707.1|CN140707 OX1_46_H12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_H12_A002 3', mRNA sequence
Length = 541
Score = 116 bits (248), Expect = 5e-025
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = -2 / +2
Query: 651 MPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPVKPADMKKL 472
MPGMTGY LL ++K SSSL DIPVVIMSSEN+P+RI+RCL++GA+EFFLKPV +DM KL
Sbjct: 2 MPGMTGYALLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVGLSDMNKL 181
Query: 471 KSHLL 457
K H+L
Sbjct: 182 KPHIL 196
>gb|CF756608.1|CF756608 DSAF1_6_C12.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_C12_A011 3', mRNA sequence
Length = 584
Score = 115 bits (245), Expect = 1e-024
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = -2 / +2
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKP 499
V +IITDYCMP M+GY+LL RVK S+ L +IPVV+MSSEN P RI RCL++GAEEF +KP
Sbjct: 11 VHMIITDYCMPEMSGYELLKRVKESAELREIPVVLMSSENSPTRIRRCLEEGAEEFLIKP 190
Query: 498 VKPADMKKLKSHLL 457
V+ +D+ +L S L+
Sbjct: 191 VRASDVSRLCSRLV 232
>gb|BZ334682.1|BZ334682 hx80h06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx80h06 5', DNA sequence
Length = 738
Score = 66.6 bits (139), Expect(2) = 5e-021
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1 / -3
Query: 535 APADPGRHVLRRHDHHRNVRER*GPLHSR 621
+PADPGRH+LRRHDHHRNV ER GPLH R
Sbjct: 481 SPADPGRHILRRHDHHRNVLERGGPLHPR 395
Score = 63.4 bits (132), Expect(3) = 3e-024
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = -2 / +2
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVK 610
QEIDV+LIITDYCMPGMTGYDLL RVK
Sbjct: 200 QEIDVNLIITDYCMPGMTGYDLLKRVK 280
Score = 56.1 bits (116), Expect(2) = 5e-021
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +1 / -3
Query: 610 LHSREQIVSCHAGHAVVSDDETHVDLL 690
LH EQIVSCHA HAVVSDDE HVDLL
Sbjct: 280 LHPLEQIVSCHAWHAVVSDDEIHVDLL 200
Score = 53.3 bits (110), Expect(3) = 3e-024
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = -3 / +3
Query: 611 RGPHRSRTFRW*SCRLRTCLPGSAG 537
RGP RSRTF W*SC LR CLPGSAG
Sbjct: 405 RGPPRSRTFLW*SCLLRMCLPGSAG 479
Score = 38.6 bits (78), Expect(3) = 3e-024
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2 / +3
Query: 789 KALELLGLRDNGAEDA 742
KALELLGLRDNGAEDA
Sbjct: 3 KALELLGLRDNGAEDA 50
>gb|CW433996.1|CW433996 fsbb001f149h18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f149h18, DNA
sequence
Length = 576
Score = 78.0 bits (164), Expect(2) = 2e-023
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = -2 / +2
Query: 921 AMTVLDAESRFHVLAVDDSIIDRKLIEMLLKSSSYQ 814
AMTV+DAESRFHVLAVDDSI+DRKLIEMLLK+SSYQ
Sbjct: 161 AMTVVDAESRFHVLAVDDSIVDRKLIEMLLKNSSYQ 268
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = -1 / +1
Query: 919 HDGAGRRVAVPCPGGGRQHHRQEAHRDAAQELVLP 815
HDG G RVAVPCP GGRQH RQEAHRDA QELVLP
Sbjct: 163 HDGGGCRVAVPCPRGGRQHRRQEAHRDAPQELVLP 267
Score = 54.7 bits (113), Expect(2) = 2e-023
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = -2 / +3
Query: 813 VTTVDSGNKALELLGLRDNGAEDA 742
VTTVDSG+KALELLGLRDNGAEDA
Sbjct: 447 VTTVDSGSKALELLGLRDNGAEDA 518
Score = 53.3 bits (110), Expect(2) = 2e-022
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -3 / +1
Query: 815 K*PRWIPGTRRWSCWG*GTT 756
+*PRWIPG RRWSCWG*GTT
Sbjct: 445 Q*PRWIPGARRWSCWG*GTT 504
>gb|CW163093.1|CW163093 104_570_11151283_116_36445_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151283, DNA
sequence
Length = 691
Score = 78.0 bits (164), Expect(2) = 3e-023
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = -2 / +1
Query: 921 AMTVLDAESRFHVLAVDDSIIDRKLIEMLLKSSSYQ 814
AMTV+DAESRFHVLAVDDSI+DRKLIEMLLK+SSYQ
Sbjct: 184 AMTVVDAESRFHVLAVDDSIVDRKLIEMLLKNSSYQ 291
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = -1 / +3
Query: 919 HDGAGRRVAVPCPGGGRQHHRQEAHRDAAQELVLP 815
HDG G RVAVPCP GGRQH RQEAHRDA QELVLP
Sbjct: 186 HDGGGCRVAVPCPRGGRQHRRQEAHRDAPQELVLP 290
Score = 54.7 bits (113), Expect(2) = 3e-023
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = -2 / +2
Query: 813 VTTVDSGNKALELLGLRDNGAEDA 742
VTTVDSG+KALELLGLRDNGAEDA
Sbjct: 470 VTTVDSGSKALELLGLRDNGAEDA 541
Score = 53.3 bits (110), Expect(2) = 2e-022
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -3 / +3
Query: 815 K*PRWIPGTRRWSCWG*GTT 756
+*PRWIPG RRWSCWG*GTT
Sbjct: 468 Q*PRWIPGARRWSCWG*GTT 527
>gb|CW082012.1|CW082012 104_422_10943045_114_32316_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943045, DNA
sequence
Length = 693
Score = 48.3 bits (99), Expect(4) = 6e-023
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2 / -3
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVK 610
QE +VS+IITDY MP MTGYDLL +VK
Sbjct: 526 QEPNVSMIITDYWMPEMTGYDLLKKVK 446
Score = 45.5 bits (93), Expect(4) = 6e-023
Identities = 14/30 (46%), Positives = 25/30 (83%)
Frame = -2 / -3
Query: 546 ISRCLQDGAEEFFLKPVKPADMKKLKSHLL 457
+ RCL++GAE+F LKPV+P+D+ ++ + +L
Sbjct: 178 VFRCLEEGAEDFLLKPVRPSDISRITTRIL 89
Score = 41.4 bits (84), Expect(4) = 6e-023
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -2 / -3
Query: 606 SSSLTDIPVVIMSSENVPARISR 538
SS L IPVVIMSSENVP RI+R
Sbjct: 352 SSKLKQIPVVIMSSENVPTRITR 284
Score = 28.6 bits (56), Expect(4) = 6e-023
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2 / -3
Query: 813 VTTVDSGNKALELLG 769
VT VDSG +ALE+LG
Sbjct: 691 VTAVDSGKRALEILG 647
>gb|CW177734.1|CW177734 104_591_11159186_148_36609_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159186, DNA
sequence
Length = 602
Score = 60.6 bits (126), Expect(3) = 8e-023
Identities = 22/34 (64%), Positives = 30/34 (88%)
Frame = -2 / -3
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSL 595
D+Q++ V+LIITDYCMPGMTGYDLL ++K ++ L
Sbjct: 129 DNQDVAVNLIITDYCMPGMTGYDLLKKIKVTTGL 28
Score = 53.8 bits (111), Expect(3) = 8e-023
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = -1 / -3
Query: 913 GAGRRVAVPCPGGGRQHHRQEAHRDAAQELVLP 815
G R +VPCPGGGRQ QEAHR+A Q+L LP
Sbjct: 543 GGDHRDSVPCPGGGRQSPGQEAHREAPQDLFLP 445
Score = 35.4 bits (71), Expect(3) = 8e-023
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2 / -2
Query: 813 VTTVDSGNKALELLGLRDN 757
VTTVDSG+KAL+ LGL D+
Sbjct: 334 VTTVDSGSKALQFLGLHDD 278
>gb|CF483095.1|CF483095 POL1_11_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_11_F04_A002 3', mRNA sequence
Length = 574
Score = 108 bits (231), Expect = 1e-022
Identities = 45/64 (70%), Positives = 53/64 (82%)
Frame = -2 / +3
Query: 681 DVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLK 502
DV++IITDY MPGMTGY+LL VK SS L +IPVVIMSSENVP RI+RCL++GAE+F LK
Sbjct: 45 DVNMIITDYWMPGMTGYELLKHVKESSELREIPVVIMSSENVPTRITRCLEEGAEDFLLK 224
Query: 501 PVKP 490
P
Sbjct: 225 ARPP 236
>gb|CW056974.1|CW056974 104_298_10517969_115_30157 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517969, DNA
sequence
Length = 557
Score = 63.4 bits (132), Expect(3) = 2e-022
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = -2 / +2
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVK 610
QEIDV+LIITDYCMPGMTGYDLL RVK
Sbjct: 305 QEIDVNLIITDYCMPGMTGYDLLKRVK 385
Score = 54.7 bits (113), Expect(3) = 2e-022
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = -2 / +3
Query: 813 VTTVDSGNKALELLGLRDNGAEDA 742
VTTVDSG+KALELLGLRDNGAEDA
Sbjct: 84 VTTVDSGSKALELLGLRDNGAEDA 155
Score = 30.4 bits (60), Expect(3) = 2e-022
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -2 / +2
Query: 615 VKGSSSLTDIPVVIMSS 565
++GSSS DIPVVIMSS
Sbjct: 506 MQGSSSAQDIPVVIMSS 556
>gb|CW188122.1|CW188122 104_607_11172854_116_36728_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172854, DNA
sequence
Length = 665
Score = 91.3 bits (193), Expect(2) = 2e-022
Identities = 38/50 (76%), Positives = 43/50 (86%)
Frame = -2 / +2
Query: 681 DVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCL 532
DV++IITDY MPGMTGY+LL VK SS L +IPVVIMSSENVP RI+RCL
Sbjct: 515 DVNMIITDYWMPGMTGYELLQHVKESSELREIPVVIMSSENVPTRITRCL 664
Score = 38.6 bits (78), Expect(2) = 2e-022
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -2 / +2
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQ 814
HVLAVDDS +DR +I +L+SS Y+
Sbjct: 254 HVLAVDDSSVDRAVIAKILRSSKYR 328
>gb|CW467089.1|CW467089 fsbb001f218k03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218k03, DNA
sequence
Length = 411
Score = 107 bits (229), Expect = 2e-022
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = -2 / -3
Query: 651 MPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPVKPADMKKL 472
MPGMTGY+LL VK SS L +IPVVIMSSENVP RI+RCL++GAE+F LKPV+P+D+ +L
Sbjct: 406 MPGMTGYELLKHVKESSELREIPVVIMSSENVPTRITRCLEEGAEDFLLKPVRPSDVSRL 227
Query: 471 KSHL 460
S +
Sbjct: 226 CSRI 215
>gb|CW163094.1|CW163094 104_570_11151283_148_36446_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151283, DNA
sequence
Length = 728
Score = 66.6 bits (139), Expect(2) = 5e-021
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1 / +2
Query: 535 APADPGRHVLRRHDHHRNVRER*GPLHSR 621
+PADPGRH+LRRHDHHRNV ER GPLH R
Sbjct: 446 SPADPGRHILRRHDHHRNVLERGGPLHPR 532
Score = 56.1 bits (116), Expect(2) = 5e-021
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +1 / +2
Query: 610 LHSREQIVSCHAGHAVVSDDETHVDLL 690
LH EQIVSCHA HAVVSDDE HVDLL
Sbjct: 647 LHPLEQIVSCHAWHAVVSDDEIHVDLL 727
>gb|CW243252.1|CW243252 104_703_11219878_148_37569_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219878, DNA
sequence
Length = 663
Score = 57.0 bits (118), Expect(3) = 5e-021
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -1 / -2
Query: 913 GAGRRVAVPCPGGGRQHHRQEAHRDAAQELVLP 815
G G R +VPCPGGGRQ QEAHR+A Q+L LP
Sbjct: 485 GGGHRDSVPCPGGGRQSPGQEAHREAPQDLFLP 387
Score = 51.5 bits (106), Expect(3) = 5e-021
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -2 / -2
Query: 696 DHQEIDVSLIITDYCMPGMTGYD 628
D+Q++ V+LIITDYCMPGMTGYD
Sbjct: 71 DNQDVAVNLIITDYCMPGMTGYD 3
Score = 35.4 bits (71), Expect(3) = 5e-021
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2 / -1
Query: 813 VTTVDSGNKALELLGLRDN 757
VTTVDSG+KAL+ LGL D+
Sbjct: 276 VTTVDSGSKALQFLGLHDD 220
>gb|CW429386.1|CW429386 fsbb001f142j21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142j21, DNA
sequence
Length = 694
Score = 66.6 bits (139), Expect(2) = 5e-021
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1 / +2
Query: 535 APADPGRHVLRRHDHHRNVRER*GPLHSR 621
+PADPGRH+LRRHDHHRNV ER GPLH R
Sbjct: 326 SPADPGRHILRRHDHHRNVLERGGPLHPR 412
Score = 56.1 bits (116), Expect(2) = 5e-021
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +1 / +2
Query: 610 LHSREQIVSCHAGHAVVSDDETHVDLL 690
LH EQIVSCHA HAVVSDDE HVDLL
Sbjct: 527 LHPLEQIVSCHAWHAVVSDDEIHVDLL 607
>gb|CW101251.1|CW101251 104_469_11004541_116_34404_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004541, DNA
sequence
Length = 691
Score = 66.6 bits (139), Expect(2) = 5e-021
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1 / -3
Query: 535 APADPGRHVLRRHDHHRNVRER*GPLHSR 621
+PADPGRH+LRRHDHHRNV ER GPLH R
Sbjct: 290 SPADPGRHILRRHDHHRNVLERGGPLHPR 204
Score = 56.1 bits (116), Expect(2) = 5e-021
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +1 / -3
Query: 610 LHSREQIVSCHAGHAVVSDDETHVDLL 690
LH EQIVSCHA HAVVSDDE HVDLL
Sbjct: 89 LHPLEQIVSCHAWHAVVSDDEIHVDLL 9
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 881,910,352
Number of Sequences: 832831
Number of extensions: 11074663
Number of successful extensions: 103032
Number of sequences better than 1.0e-020: 35
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 32326753174
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)