TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619346.2.2
(1471 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN145985.1|CN145985 WOUND1_36_D09.g1_A002 Wounded leaves... 57 1e-025
gb|BF421350.1|BF421350 FM1_7_E12.b1_A003 Floral-Induced Mer... 57 3e-025
gb|BF587477.1|BF587477 FM1_36_G11.b1_A003 Floral-Induced Me... 57 3e-025
gb|BG102277.1|BG102277 RHIZ2_24_C10.b1_A003 Rhizome2 (RHIZ2... 57 3e-025
gb|BG948381.1|BG948381 IP1_9_A06.b1_A002 Immature pannicle ... 56 4e-025
gb|BI246014.1|BI246014 IP1_66_E12.b1_A002 Immature pannicle... 56 4e-025
gb|BG240490.1|BG240490 OV1_30_F09.b1_A002 Ovary 1 (OV1) Sor... 56 4e-025
gb|DN551757.1|DN551757 pSPR-RT-A-H1_A09_C237 pSPR Sorghum p... 57 6e-023
gb|BI211915.1|BI211915 IP1_62_A08.b1_A002 Immature pannicle... 55 2e-021
gb|BF705557.1|BF705557 RHIZ2_4_F07.b1_A003 Rhizome2 (RHIZ2)... 55 7e-021
>gb|CN145985.1|CN145985 WOUND1_36_D09.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_D09_A002 5', mRNA sequence
Length = 792
Score = 57.0 bits (118), Expect(4) = 1e-025
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = +3 / +3
Query: 159 LRRSGCCRLRAWPRRAFRAQAWTCCR 236
LRRSG CR RAWP R RAQAWTCCR
Sbjct: 252 LRRSGGCRRRAWPWRPLRAQAWTCCR 329
Score = 56.1 bits (116), Expect(4) = 1e-025
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2 / +2
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQSPTLNLNQCPSLNQNPNQS 418
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS NLN SLN NP +S
Sbjct: 344 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQSLRRNLNLNLSLNLNP*RS 523
Score = 34.5 bits (69), Expect(4) = 1e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +2
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 197 AFSSPCFWEPWRPLPP 244
Score = 26.3 bits (51), Expect(4) = 1e-025
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +3
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 114 RELASRRACLLQEQRSSHGGDASPLFMLP 200
>gb|BF421350.1|BF421350 FM1_7_E12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 584
Score = 56.5 bits (117), Expect(4) = 3e-025
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2 / +2
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQSPTLNLNQCPSLNQNPNQS 418
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS NLN SLN NP +S
Sbjct: 308 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQSLRRNLNLNLSLNLNPCRS 487
Score = 55.1 bits (114), Expect(4) = 3e-025
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / +3
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 219 RRSGGCRRRAWPWRPLRAQAWTCCR 293
Score = 34.5 bits (69), Expect(4) = 3e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +2
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 161 AFSSPCFWEPWRPLPP 208
Score = 26.3 bits (51), Expect(4) = 3e-025
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +3
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 78 RELASRRACLLQEQRSSHGGDASPLFMLP 164
>gb|BF587477.1|BF587477 FM1_36_G11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 550
Score = 56.5 bits (117), Expect(4) = 3e-025
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2 / +3
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQSPTLNLNQCPSLNQNPNQS 418
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS NLN SLN NP +S
Sbjct: 303 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQSLRRNLNLNLSLNLNPCRS 482
Score = 55.1 bits (114), Expect(4) = 3e-025
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 214 RRSGGCRRRAWPWRPLRAQAWTCCR 288
Score = 34.5 bits (69), Expect(4) = 3e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 156 AFSSPCFWEPWRPLPP 203
Score = 26.3 bits (51), Expect(4) = 3e-025
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +1
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 73 RELASRRACLLQEQRSSHGGDASPLFMLP 159
>gb|BG102277.1|BG102277 RHIZ2_24_C10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 528
Score = 56.5 bits (117), Expect(4) = 3e-025
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2 / +3
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQSPTLNLNQCPSLNQNPNQS 418
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS NLN SLN NP +S
Sbjct: 309 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQSLRRNLNLNLSLNLNPCRS 488
Score = 55.1 bits (114), Expect(4) = 3e-025
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 220 RRSGGCRRRAWPWRPLRAQAWTCCR 294
Score = 34.5 bits (69), Expect(4) = 3e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 162 AFSSPCFWEPWRPLPP 209
Score = 26.3 bits (51), Expect(4) = 3e-025
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +1
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 79 RELASRRACLLQEQRSSHGGDASPLFMLP 165
>gb|BG948381.1|BG948381 IP1_9_A06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 572
Score = 56.1 bits (116), Expect(4) = 4e-025
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2 / +1
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQSPTLNLNQCPSLNQNPNQS 418
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS NLN SLN NP +S
Sbjct: 304 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQSLRRNLNLNLSLNLNP*RS 483
Score = 55.1 bits (114), Expect(4) = 4e-025
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / +2
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 215 RRSGGCRRRAWPWRPLRAQAWTCCR 289
Score = 34.5 bits (69), Expect(4) = 4e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +1
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 157 AFSSPCFWEPWRPLPP 204
Score = 26.3 bits (51), Expect(4) = 4e-025
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +2
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 74 RELASRRACLLQEQRSSHGGDASPLFMLP 160
>gb|BI246014.1|BI246014 IP1_66_E12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 56.1 bits (116), Expect(4) = 4e-025
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2 / +3
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQSPTLNLNQCPSLNQNPNQS 418
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS NLN SLN NP +S
Sbjct: 309 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQSLRRNLNLNLSLNLNP*RS 488
Score = 55.1 bits (114), Expect(4) = 4e-025
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 220 RRSGGCRRRAWPWRPLRAQAWTCCR 294
Score = 34.5 bits (69), Expect(4) = 4e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 162 AFSSPCFWEPWRPLPP 209
Score = 26.3 bits (51), Expect(4) = 4e-025
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +1
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 79 RELASRRACLLQEQRSSHGGDASPLFMLP 165
>gb|BG240490.1|BG240490 OV1_30_F09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 534
Score = 56.1 bits (116), Expect(4) = 4e-025
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2 / +2
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQSPTLNLNQCPSLNQNPNQS 418
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS NLN SLN NP +S
Sbjct: 308 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQSLRRNLNLNLSLNLNP*RS 487
Score = 55.1 bits (114), Expect(4) = 4e-025
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / +3
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 219 RRSGGCRRRAWPWRPLRAQAWTCCR 293
Score = 34.5 bits (69), Expect(4) = 4e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +2
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 161 AFSSPCFWEPWRPLPP 208
Score = 26.3 bits (51), Expect(4) = 4e-025
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +3
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 78 RELASRRACLLQEQRSSHGGDASPLFMLP 164
>gb|DN551757.1|DN551757 pSPR-RT-A-H1_A09_C237 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1419
Score = 56.5 bits (117), Expect(5) = 6e-023
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2 / -3
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQSPTLNLNQCPSLNQNPNQS 418
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS NLN SLN NP +S
Sbjct: 1306 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQSLRRNLNLNLSLNLNPCRS 1127
Score = 55.1 bits (114), Expect(5) = 6e-023
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / -1
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 1395 RRSGGCRRRAWPWRPLRAQAWTCCR 1321
Score = 29.5 bits (58), Expect(5) = 6e-023
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / -3
Query: 1414 FCYMLVVMYIC 1446
FCYM +VMY+C
Sbjct: 85 FCYMFIVMYVC 53
Score = 28.1 bits (55), Expect(5) = 6e-023
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / -2
Query: 1352 YMILVQFSLFRVY 1390
YMILVQFSLF +Y
Sbjct: 149 YMILVQFSLFPLY 111
Score = 23.1 bits (44), Expect(5) = 6e-023
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -1
Query: 1188 *PSTHPTSSYQL 1223
*P+ HPTSS QL
Sbjct: 345 *PAAHPTSSRQL 310
>gb|BI211915.1|BI211915 IP1_62_A08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 448
Score = 55.1 bits (114), Expect(4) = 2e-021
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 220 RRSGGCRRRAWPWRPLRAQAWTCCR 294
Score = 43.2 bits (88), Expect(4) = 2e-021
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2 / +3
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQS 364
R + + N LSRSP S P+ NLN++ H+QSQ L+L QS
Sbjct: 309 RSHNPTRNPSLSRSPCHSQSPNLNLNQSPSHVQSQKLSLIQS 434
Score = 34.5 bits (69), Expect(4) = 2e-021
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 162 AFSSPCFWEPWRPLPP 209
Score = 26.3 bits (51), Expect(4) = 2e-021
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +1
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 79 RELASRRACLLQEQRSSHGGDASPLFMLP 165
>gb|BF705557.1|BF705557 RHIZ2_4_F07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 430
Score = 55.1 bits (114), Expect(4) = 7e-021
Identities = 20/25 (80%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 162 RRSGCCRLRAWPRRAFRAQAWTCCR 236
RRSG CR RAWP R RAQAWTCCR
Sbjct: 217 RRSGGCRRRAWPWRPLRAQAWTCCR 291
Score = 41.4 bits (84), Expect(4) = 7e-021
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +2 / +3
Query: 239 RCPSRSHNLKLSRSPICSHCPSQNLNRNLCHIQSQSLNLNQ 361
R + + N LSRSP S P+ NLN++ H+QSQ L+L Q
Sbjct: 306 RSHNPNRNPSLSRSPCHSQSPNLNLNQSPSHVQSQXLSLIQ 428
Score = 34.5 bits (69), Expect(4) = 7e-021
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 113 AFSSPCFWQEWPLPPP 160
AFSSPCFW+ W PP
Sbjct: 159 AFSSPCFWEPWRPLPP 206
Score = 26.3 bits (51), Expect(4) = 7e-021
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3 / +1
Query: 36 RKTHRRVSRLITCRSSRNGGDASPLLLSP 122
R+ R + L+ + S +GGDASPL + P
Sbjct: 76 RELASRRACLLQEQRSSHGGDASPLFMLP 162
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 761,828,970
Number of Sequences: 832831
Number of extensions: 9649018
Number of successful extensions: 108679
Number of sequences better than 1.0e-020: 11
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 50725092660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)