TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619146.2.1
(636 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stres... 221 5e-062
gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated ... 220 5e-062
gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Me... 221 4e-058
gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Me... 162 3e-040
gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Me... 160 1e-038
gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Me... 156 2e-037
gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2... 155 4e-037
gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Me... 155 6e-037
gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle... 137 2e-032
gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedl... 132 5e-031
gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stresse... 132 5e-031
gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots ... 130 3e-030
gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 ... 130 3e-030
gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1... 130 3e-030
gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Me... 87 4e-029
gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Me... 127 1e-028
>gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_B02_A002 3', mRNA sequence
Length = 694
Score = 221 bits (478), Expect(3) = 5e-062
Identities = 94/108 (87%), Positives = 98/108 (90%)
Frame = -3 / +3
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C PAFTLKFANSAGFDILETT+VNIQDLPLEAVLD++GQKAL AQL IMQQGLA
Sbjct: 153 ILCCSLKPAFTLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLA 332
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI*GS 302
YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML NWTFI* S
Sbjct: 333 YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLVNWTFI*RS 476
Score = 204 bits (441), Expect(4) = 1e-059
Identities = 84/106 (79%), Positives = 86/106 (81%)
Frame = +3 / -1
Query: 303 EPQMKVQLASMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMIAGSCA 482
E QMKVQL SMSARH GAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMI SCA
Sbjct: 475 ERQMKVQLTSMSARH*GAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILESCA 296
Query: 483 DRAFWPXXXXXXXXXXXWMFTIVVSRMSKPALLANLSVKAGGFREQ 620
+RAFWP WMFT VVSRMSKPALLANLSVKAG +Q
Sbjct: 295 NRAFWPSSSRTASSGRSWMFTRVVSRMSKPALLANLSVKAGFREQQ 158
Score = 190 bits (410), Expect(3) = 7e-051
Identities = 83/100 (83%), Positives = 87/100 (87%)
Frame = +2 / -3
Query: 305 ASDEGPVGEHERQALRGAVVAHHLPRHCLLVRRLPPHARPAHATGEVRQALLHDRGELRG 484
ASDEGPV EHERQALRG VV +HLPRH LLVR LPPHAR AHA GEVRQALLHD GELR
Sbjct: 473 ASDEGPVDEHERQALRGTVVTNHLPRHRLLVRCLPPHARSAHAAGEVRQALLHDLGELRK 294
Query: 485 QGLLALLVEDRLQRQVLDVHHRRLQDVEAGAVGELERESR 604
QGLLA++VE+ LQRQVLDVH RLQDVEAG VGELERESR
Sbjct: 293 QGLLAVVVENSLQRQVLDVHQGRLQDVEAGTVGELERESR 174
Score = 32.7 bits (65), Expect(4) = 1e-059
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3 / -3
Query: 264 KGGIRSGAAERCCEPQMK 317
KG +RSGA ER CEPQ +
Sbjct: 530 KGDVRSGAPERGCEPQKR 477
Score = 29.9 bits (59), Expect(3) = 5e-062
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 259 LLRIISCFSVVP 224
LLRIISCFSVVP
Sbjct: 543 LLRIISCFSVVP 578
Score = 26.3 bits (51), Expect(3) = 5e-062
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3 / +1
Query: 310 *GSQHRSAAPDRMPPFA 260
*GSQ RS APDR P +
Sbjct: 484 *GSQPRSGAPDRTSPLS 534
Score = 25.8 bits (50), Expect(4) = 1e-059
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3 / -1
Query: 225 GTTEKQLMIRSKA 263
GTTEKQL+IRS +
Sbjct: 577 GTTEKQLIIRSSS 539
Score = 25.4 bits (49), Expect(3) = 7e-051
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1 / -2
Query: 580 WRT*A*KPAASESSRVSR 633
WRT*A*KPA+ S + R
Sbjct: 198 WRT*A*KPASESSRVLRR 145
Score = 24.9 bits (48), Expect(4) = 1e-059
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / -1
Query: 606 GFREQQSIAS 635
GFREQQSIAS
Sbjct: 175 GFREQQSIAS 146
Score = 24.4 bits (47), Expect(3) = 7e-051
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2 / -3
Query: 224 RHNGKATNDT** 259
R+NGKATN+T**
Sbjct: 578 RYNGKATNNT** 543
>gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_A10_A002 3', mRNA sequence
Length = 560
Score = 220 bits (474), Expect(3) = 5e-062
Identities = 93/101 (92%), Positives = 96/101 (95%)
Frame = -3 / +2
Query: 604 PAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVC 425
PAFTLKFANSAGFDILETT+VNIQDLPLEAVLD++GQKAL AQL IMQQGLAYLPGGVC
Sbjct: 5 PAFTLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLAYLPGGVC 184
Query: 424 RSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI*GS 302
RSSMGRQASYEQAVAWKVVGDDGAPQCLALML NWTFI* S
Sbjct: 185 RSSMGRQASYEQAVAWKVVGDDGAPQCLALMLVNWTFI*RS 307
Score = 203 bits (437), Expect(3) = 8e-058
Identities = 83/104 (79%), Positives = 84/104 (80%)
Frame = +3 / -3
Query: 294 RCCEPQMKVQLASMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMIAG 473
R E QMKVQL SMSARH GAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMI
Sbjct: 315 RNAERQMKVQLTSMSARH*GAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILE 136
Query: 474 SCADRAFWPXXXXXXXXXXXWMFTIVVSRMSKPALLANLSVKAG 605
SCA+RAFWP WMFT VVSRMSKPALLANLSV AG
Sbjct: 135 SCANRAFWPSSSRTASSGRSWMFTRVVSRMSKPALLANLSVNAG 4
Score = 190 bits (410), Expect(2) = 8e-049
Identities = 83/100 (83%), Positives = 86/100 (86%)
Frame = +2 / -2
Query: 305 ASDEGPVGEHERQALRGAVVAHHLPRHCLLVRRLPPHARPAHATGEVRQALLHDRGELRG 484
ASDEGPV EHERQALRG VV +HLPRH LLVR LPPHAR AHA GEVRQALLHD GELR
Sbjct: 304 ASDEGPVDEHERQALRGTVVTNHLPRHRLLVRCLPPHARSAHAAGEVRQALLHDLGELRK 125
Query: 485 QGLLALLVEDRLQRQVLDVHHRRLQDVEAGAVGELERESR 604
QGLLA++VED LQRQVLDVH RLQDVEAG VGELERE R
Sbjct: 124 QGLLAVVVEDSLQRQVLDVHQGRLQDVEAGTVGELERECR 5
Score = 35.0 bits (70), Expect(3) = 8e-058
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3 / -2
Query: 264 KGGIRSGAAERCCEPQMK 317
KG +RSGAAER CEPQ +
Sbjct: 361 KGDVRSGAAERGCEPQKR 308
Score = 29.9 bits (59), Expect(3) = 5e-062
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 259 LLRIISCFSVVP 224
LLRIISCFSVVP
Sbjct: 374 LLRIISCFSVVP 409
Score = 28.1 bits (55), Expect(3) = 5e-062
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 310 *GSQHRSAAPDRMPPFA 260
*GSQ RSAAPDR P +
Sbjct: 315 *GSQPRSAAPDRTSPLS 365
Score = 25.8 bits (50), Expect(3) = 8e-058
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3 / -3
Query: 225 GTTEKQLMIRSKA 263
GTTEKQL+IRS +
Sbjct: 408 GTTEKQLIIRSSS 370
Score = 24.4 bits (47), Expect(2) = 8e-049
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2 / -2
Query: 224 RHNGKATNDT** 259
R+NGKATN+T**
Sbjct: 409 RYNGKATNNT** 374
>gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 490
Score = 221 bits (478), Expect(2) = 4e-058
Identities = 94/108 (87%), Positives = 98/108 (90%)
Frame = -3 / +2
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C PAFTLKFANSAGFDILETT+VNIQDLPLEAVLD++GQKAL AQL IMQQGLA
Sbjct: 56 ILCCSLKPAFTLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLA 235
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI*GS 302
YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML NWTFI* S
Sbjct: 236 YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLVNWTFI*RS 379
Score = 212 bits (457), Expect(3) = 5e-057
Identities = 86/109 (78%), Positives = 88/109 (80%)
Frame = +3 / -2
Query: 294 RCCEPQMKVQLASMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMIAG 473
R E QMKVQL SMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMI
Sbjct: 387 RSVERQMKVQLTSMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILE 208
Query: 474 SCADRAFWPXXXXXXXXXXXWMFTIVVSRMSKPALLANLSVKAGGFREQ 620
SCA+RAFWP WMFT VVSRMSKPALLANLSVKAG +Q
Sbjct: 207 SCANRAFWPSSSRTASSGRSWMFTRVVSRMSKPALLANLSVKAGFREQQ 61
Score = 198 bits (426), Expect = 9e-050
Identities = 86/100 (86%), Positives = 89/100 (89%)
Frame = +2 / -1
Query: 305 ASDEGPVGEHERQALRGAVVAHHLPRHCLLVRRLPPHARPAHATGEVRQALLHDRGELRG 484
ASDEGPV EHERQALRG VV +HLPRH LLVRRLPPHAR AHA GEVRQALLHD GELR
Sbjct: 376 ASDEGPVDEHERQALRGTVVTNHLPRHRLLVRRLPPHARSAHAAGEVRQALLHDLGELRK 197
Query: 485 QGLLALLVEDRLQRQVLDVHHRRLQDVEAGAVGELERESR 604
QGLLA++VED LQRQVLDVH RLQDVEAGAVGELERESR
Sbjct: 196 QGLLAVVVEDGLQRQVLDVHQGRLQDVEAGAVGELERESR 77
Score = 24.9 bits (48), Expect(3) = 5e-057
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / -2
Query: 606 GFREQQSIAS 635
GFREQQSIAS
Sbjct: 78 GFREQQSIAS 49
Score = 24.4 bits (47), Expect(2) = 4e-058
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 259 LLRIISCFSVVP 224
LL IISCFSV P
Sbjct: 442 LLCIISCFSVAP 477
Score = 24.0 bits (46), Expect(3) = 5e-057
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 260 GKRRHPVWR 286
G RRHP+WR
Sbjct: 439 G*RRHPIWR 413
>gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 423
Score = 162 bits (348), Expect(2) = 3e-040
Identities = 62/69 (89%), Positives = 63/69 (91%)
Frame = +3 / -1
Query: 294 RCCEPQMKVQLASMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMIAG 473
R E QMKVQL SMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMI
Sbjct: 216 RSVERQMKVQLTSMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILE 37
Query: 474 SCADRAFWP 500
SCA+RAFWP
Sbjct: 36 SCANRAFWP 10
Score = 149 bits (319), Expect(2) = 2e-036
Identities = 62/69 (89%), Positives = 64/69 (92%)
Frame = -3 / +2
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
D++GQKAL AQL IMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML
Sbjct: 2 DDDGQKALFAQLSKIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 181
Query: 328 ANWTFI*GS 302
NWTFI* S
Sbjct: 182 VNWTFI*RS 208
Score = 134 bits (288), Expect = 1e-030
Identities = 57/68 (83%), Positives = 60/68 (88%)
Frame = +2 / -3
Query: 305 ASDEGPVGEHERQALRGAVVAHHLPRHCLLVRRLPPHARPAHATGEVRQALLHDRGELRG 484
ASDEGPV EHERQALRG VV +HLPRH LLVRRLPPHAR AHA GEVRQALLHD GELR
Sbjct: 205 ASDEGPVDEHERQALRGTVVTNHLPRHRLLVRRLPPHARSAHAAGEVRQALLHDLGELRK 26
Query: 485 QGLLALLV 508
QGLLA++V
Sbjct: 25 QGLLAVVV 2
Score = 24.4 bits (47), Expect(2) = 2e-036
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 259 LLRIISCFSVVP 224
LL IISCFSV P
Sbjct: 271 LLCIISCFSVAP 306
Score = 24.0 bits (46), Expect(2) = 3e-040
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 260 GKRRHPVWR 286
G RRHP+WR
Sbjct: 268 G*RRHPIWR 242
>gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 474
Score = 160 bits (345), Expect = 1e-038
Identities = 69/81 (85%), Positives = 73/81 (90%)
Frame = -3 / +1
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C PAFTLKFANSAGFDILETT+VNIQDLPLEAVLD++GQKAL AQL IMQQGLA
Sbjct: 232 ILCCSLKPAFTLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLA 411
Query: 445 YLPGGVCRSSMGRQASYEQAV 383
YLPGGVCRSSMGRQASYEQAV
Sbjct: 412 YLPGGVCRSSMGRQASYEQAV 474
Score = 151 bits (324), Expect(2) = 3e-037
Identities = 60/79 (75%), Positives = 62/79 (78%)
Frame = +3 / -2
Query: 384 TACSYDACRPMLDLHTPPGRYARPCCMIAGSCADRAFWPXXXXXXXXXXXWMFTIVVSRM 563
TACSYDACRPMLDLHTPPGRYARPCCMI SCA+RAFWP WMFT VVSRM
Sbjct: 473 TACSYDACRPMLDLHTPPGRYARPCCMILESCANRAFWPSSSRTASSGRSWMFTRVVSRM 294
Query: 564 SKPALLANLSVKAGGFREQ 620
SKPALLANLSVKAG +Q
Sbjct: 293 SKPALLANLSVKAGFREQQ 237
Score = 145 bits (311), Expect = 6e-034
Identities = 64/74 (86%), Positives = 66/74 (89%)
Frame = +2 / -1
Query: 383 HCLLVRRLPPHARPAHATGEVRQALLHDRGELRGQGLLALLVEDRLQRQVLDVHHRRLQD 562
H LLVRRLPPHAR AHA GEVRQALLHD GELR QGLLA++VED LQRQVLDVH RLQD
Sbjct: 474 HRLLVRRLPPHARSAHAAGEVRQALLHDLGELRKQGLLAVVVEDGLQRQVLDVHQGRLQD 295
Query: 563 VEAGAVGELERESR 604
VEAGAVGELERESR
Sbjct: 294 VEAGAVGELERESR 253
Score = 24.9 bits (48), Expect(2) = 3e-037
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / -2
Query: 606 GFREQQSIAS 635
GFREQQSIAS
Sbjct: 254 GFREQQSIAS 225
>gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 156 bits (336), Expect = 2e-037
Identities = 62/106 (58%), Positives = 76/106 (71%)
Frame = -3 / +2
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C A FAN AG D+LETT++ +QD+ LE +LD++G+KAL + P IMQQG A
Sbjct: 8 IMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFA 187
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
YLPGGVC SSMGR SYEQAVAWKV+ DD P CLA M NW+F+*
Sbjct: 188 YLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 325
Score = 120 bits (257), Expect = 2e-026
Identities = 56/100 (56%), Positives = 67/100 (67%)
Frame = +2 / -3
Query: 302 RASDEGPVGEHERQALRGAVVAHHLPRHCLLVRRLPPHARPAHATGEVRQALLHDRGELR 481
R S EGPV EHE +A+RG VVA LPRH LLV PPH R HA GEVR+ALLH+ L
Sbjct: 331 RFSHEGPVHEHEGEAVRGVVVAQDLPRHRLLVGHRPPHTRYTHAAGEVREALLHNLRILG 152
Query: 482 GQGLLALLVEDRLQRQVLDVHHRRLQDVEAGAVGELERES 601
+ L A++++D L+ VL+ RRLQ VEAG VGE E S
Sbjct: 151 AERLPAIIIKDLLKGDVLESDQRRLQHVEAGLVGEGEHRS 32
Score = 114 bits (244), Expect = 1e-024
Identities = 49/96 (51%), Positives = 56/96 (58%)
Frame = +3 / -1
Query: 315 KVQLASMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMIAGSCADRAF 494
K Q +M AR CG SS TFHATACS D RP+LD HTPPGRYA+PCC+I G AF
Sbjct: 318 KDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQSAF 139
Query: 495 WPXXXXXXXXXXXWMFTIVVSRMSKPALLANLSVKA 602
P W VVS MS+PA LA ++ A
Sbjct: 138 LPSSSRIFSREMSWRAINVVSSMSRPAWLAKVNTGA 31
>gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 369
Score = 155 bits (334), Expect = 4e-037
Identities = 60/93 (64%), Positives = 73/93 (78%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT++ +QD+ LE +LD++G+KAL + P IMQQG AYLPGGVC SSMGR
Sbjct: 5 FANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMGR 184
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQAVAWKV+ DD P CLA M NW+F+*
Sbjct: 185 PVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 283
Score = 118 bits (252), Expect = 9e-026
Identities = 54/95 (56%), Positives = 65/95 (68%)
Frame = +2 / -3
Query: 302 RASDEGPVGEHERQALRGAVVAHHLPRHCLLVRRLPPHARPAHATGEVRQALLHDRGELR 481
R S EGPV EHE +A+RG VVA LPRH LLV PPH R HA GEVR+ALLH+ L
Sbjct: 289 RFSHEGPVHEHEGEAVRGVVVAQDLPRHRLLVGHRPPHTRYTHAAGEVREALLHNLRILG 110
Query: 482 GQGLLALLVEDRLQRQVLDVHHRRLQDVEAGAVGE 586
+ L A++++D L+ VL+ RRLQ VEAG VGE
Sbjct: 109 AERLPAIIIKDLLKGDVLESDQRRLQHVEAGLVGE 5
Score = 113 bits (241), Expect = 3e-024
Identities = 48/92 (52%), Positives = 54/92 (58%)
Frame = +3 / -1
Query: 315 KVQLASMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMIAGSCADRAF 494
K Q +M AR CG SS TFHATACS D RP+LD HTPPGRYA+PCC+I G AF
Sbjct: 276 KDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQSAF 97
Query: 495 WPXXXXXXXXXXXWMFTIVVSRMSKPALLANL 590
P W VVS MS+PA LA +
Sbjct: 96 LPSSSRIFSREMSWRAINVVSSMSRPAWLAKV 1
>gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 567
Score = 155 bits (333), Expect = 6e-037
Identities = 61/106 (57%), Positives = 76/106 (71%)
Frame = -3 / +1
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C A FAN +G D+LETT++ +QD+ LE +LD++G+KAL + P IMQQG A
Sbjct: 121 IMCCSLKAAPVFTFANQSGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFA 300
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
YLPGGVC SSMGR SYEQAVAWKV+ DD P CLA M NW+F+*
Sbjct: 301 YLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 438
Score = 118 bits (253), Expect = 6e-026
Identities = 55/100 (55%), Positives = 67/100 (67%)
Frame = +2 / -1
Query: 302 RASDEGPVGEHERQALRGAVVAHHLPRHCLLVRRLPPHARPAHATGEVRQALLHDRGELR 481
R S EGPV EHE +A+RG VVA LPRH LLV PPH R HA G+VR+ALLH+ L
Sbjct: 444 RFSHEGPVHEHEGEAVRGVVVAQDLPRHRLLVGHRPPHTRYTHAAGKVREALLHNLRILG 265
Query: 482 GQGLLALLVEDRLQRQVLDVHHRRLQDVEAGAVGELERES 601
+ L A++++D L+ VL+ RRLQ VEAG VGE E S
Sbjct: 264 AERLPAIIIKDLLKGDVLESDQRRLQHVEAGLVGEGEHRS 145
Score = 111 bits (238), Expect = 8e-024
Identities = 48/96 (50%), Positives = 55/96 (57%)
Frame = +3 / -2
Query: 315 KVQLASMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMIAGSCADRAF 494
K Q +M AR CG SS TFHATACS D RP+LD HTPPGRYA+PCC+I G AF
Sbjct: 431 KDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQSAF 252
Query: 495 WPXXXXXXXXXXXWMFTIVVSRMSKPALLANLSVKA 602
P W VVS MS+P LA ++ A
Sbjct: 251 LPSSSRIFSREMSWRAINVVSSMSRPDWLAKVNTGA 144
>gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 137 bits (293), Expect(2) = 2e-032
Identities = 52/93 (55%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
F N G D+LETT++ +QDL L+ + D G+KAL A++P +M+QG AYLP GVC S MGR
Sbjct: 55 FGNQMGIDMLETTLIALQDLTLDKIFDLPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGR 234
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+G+DG CLA NW+F+*
Sbjct: 235 HVSYEEAVAWKVLGEDGNVHCLAFCFVNWSFV* 333
Score = 23.1 bits (44), Expect(2) = 2e-032
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DA+LCCS K
Sbjct: 10 DAVLCCSFK 36
>gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 3', mRNA sequence
Length = 654
Score = 132 bits (283), Expect(2) = 5e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LET+++ +QDL L+ + DE G+KA+ + + +M+QG AYLP GVC S MGR
Sbjct: 166 FANKAGLDMLETSLIALQDLTLDKIFDESGRKAIFSDISKLMEQGYAYLPSGVCMSGMGR 345
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
S++QAVAWKV+G+D CLA NW+F+*
Sbjct: 346 HVSFDQAVAWKVLGEDSNVHCLAFCFVNWSFV* 444
Score = 23.1 bits (44), Expect(2) = 5e-031
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DA+LCCS K
Sbjct: 121 DAVLCCSFK 147
>gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_77_A06_A011 5', mRNA sequence
Length = 503
Score = 132 bits (283), Expect(2) = 5e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LET+++ +QDL L+ + DE G+KA+ + + +M+QG AYLP GVC S MGR
Sbjct: 68 FANKAGLDMLETSLIALQDLTLDKIFDESGRKAIFSDISKLMEQGYAYLPSGVCMSGMGR 247
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
S++QAVAWKV+G+D CLA NW+F+*
Sbjct: 248 HVSFDQAVAWKVLGEDSNVHCLAFCFVNWSFV* 346
Score = 23.1 bits (44), Expect(2) = 5e-031
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DA+LCCS K
Sbjct: 23 DAVLCCSFK 49
>gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A02_A002 3', mRNA sequence
Length = 833
Score = 130 bits (278), Expect(2) = 3e-030
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN +G D+LETT+V +QD+ LE V D++G+K L A+LP IM+QG +P G+C S +GR
Sbjct: 408 FANQSGLDMLETTLVALQDITLEKVFDDQGRKNLCAELPGIMEQGFTCIPSGLCVSGLGR 587
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+A+AWKV+ DD C+ M NW+F+*
Sbjct: 588 PVSYEKALAWKVLDDDSGAHCICFMFVNWSFV* 686
Score = 22.6 bits (43), Expect(2) = 3e-030
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / +3
Query: 631 AILCCSLK 608
AILCCSLK
Sbjct: 366 AILCCSLK 389
>gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 666
Score = 130 bits (278), Expect(2) = 3e-030
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN +G D+LETT+V +QD+ LE V D++G+K L A+LP IM+QG +P G+C S +GR
Sbjct: 105 FANQSGLDMLETTLVALQDITLEKVFDDQGRKNLCAELPGIMEQGFTCIPSGLCVSGLGR 284
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+A+AWKV+ DD C+ M NW+F+*
Sbjct: 285 PVSYEKALAWKVLDDDSGAHCICFMFVNWSFV* 383
Score = 22.6 bits (43), Expect(2) = 3e-030
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / +3
Query: 631 AILCCSLK 608
AILCCSLK
Sbjct: 63 AILCCSLK 86
>gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 130 bits (278), Expect(2) = 3e-030
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN +G D+LETT+V +QD+ LE V D++G+K L A+LP IM+QG +P G+C S +GR
Sbjct: 204 FANQSGLDMLETTLVALQDITLEKVFDDQGRKNLCAELPGIMEQGFTCIPSGLCVSGLGR 383
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+A+AWKV+ DD C+ M NW+F+*
Sbjct: 384 PVSYEKALAWKVLDDDSGAHCICFMFVNWSFV* 482
Score = 22.6 bits (43), Expect(2) = 3e-030
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / +3
Query: 631 AILCCSLK 608
AILCCSLK
Sbjct: 162 AILCCSLK 185
>gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 367
Score = 86.8 bits (183), Expect(2) = 4e-029
Identities = 33/46 (71%), Positives = 34/46 (73%)
Frame = -3 / +3
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANW 320
QG AYLPGGVC SSMGR SYEQAVAWKV+ DD P CLA M W
Sbjct: 228 QGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVKW 365
Score = 62.0 bits (129), Expect(2) = 4e-029
Identities = 24/44 (54%), Positives = 34/44 (77%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQ 455
FAN AG D+LETT++ +QD+ LE +LD++G+KAL + IMQQ
Sbjct: 1 FANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYLKIMQQ 132
>gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 513
Score = 127 bits (273), Expect = 1e-028
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = -3 / +2
Query: 556 ETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAW 377
ETT++ +QDL L+ + DE G+KAL A++P +M+QG AYLP GVC S MGR SYE+AVAW
Sbjct: 2 ETTLIALQDLTLDKIFDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEEAVAW 181
Query: 376 KVVGDDGAPQCLALMLANWTFI* 308
KV+G+DG CLA NW+F+*
Sbjct: 182 KVLGEDGNVHCLAFCFVNWSFV* 250
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 703,428,954
Number of Sequences: 832831
Number of extensions: 10913232
Number of successful extensions: 137160
Number of sequences better than 1.0e-020: 16
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18904149054
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)