TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594405.2.1
(637 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG464434.1|BG464434 EM1_69_G06.g1_A002 Embryo 1 (EM1) So... 423 e-117
gb|CX609043.1|CX609043 ANR1_10_G05.b1_A002 Anaerobic roots ... 276 2e-073
gb|CW175361.1|CW175361 104_587_11157896_116_36569_018 Sorgh... 262 3e-069
gb|CX618544.1|CX618544 GABR1_40_F04.b1_A002 GA- or brassino... 253 2e-066
gb|CL156438.1|CL156438 104_343_10782862_116_31476_190 Sorgh... 227 1e-058
gb|CW294544.1|CW294544 104_775_11415245_116_35774_023 Sorgh... 160 2e-054
gb|CW351702.1|CW351702 fsbb001f013j03k0 Sorghum methylation... 181 2e-053
gb|CW030366.1|CW030366 104_258_10500202_116_30404 Sorghum m... 167 9e-053
gb|BE358718.1|BE358718 DG1_31_B05.g1_A002 Dark Grown 1 (DG1... 167 9e-053
gb|CD234363.1|CD234363 SS1_27_F06.b1_A012 Salt-stressed see... 204 1e-051
gb|CL181620.1|CL181620 104_392_10896872_116_31926_248 Sorgh... 197 1e-049
gb|CW380242.1|CW380242 fsbb001f059p02f0 Sorghum methylation... 161 8e-045
gb|BE362683.1|BE362683 DG1_88_H08.g1_A002 Dark Grown 1 (DG1... 168 6e-041
gb|CL184899.1|CL184899 104_398_10899163_114_32368_072 Sorgh... 158 6e-038
gb|CW294545.1|CW294545 104_775_11415245_148_35775_023 Sorgh... 102 5e-037
gb|BE356353.1|BE356353 DG1_124_C04.g1_A002 Dark Grown 1 (DG... 135 7e-031
gb|CW380243.1|CW380243 fsbb001f059p02k0 Sorghum methylation... 133 3e-030
gb|BE362731.1|BE362731 DG1_88_C02.g1_A002 Dark Grown 1 (DG1... 122 4e-027
>gb|BG464434.1|BG464434 EM1_69_G06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 582
Score = 423 bits (918), Expect = e-117
Identities = 174/183 (95%), Positives = 178/183 (97%)
Frame = -2 / +1
Query: 636 DRGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFL 457
+RGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFL
Sbjct: 4 ERGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFL 183
Query: 456 REAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDH 277
REAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTR NG+VD
Sbjct: 184 REAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRTNGNVDR 363
Query: 276 QGEFKFRGYHGSYTVEVNTPSGKVARSFVVDKDSPVQVIALNV*CVGNHAPVLYFSDVLR 97
QGEFKFRGYHGSYTVEV+TPSGKVARSFVVDKDSPVQVI LNV*CVGNHA VLY S+VLR
Sbjct: 364 QGEFKFRGYHGSYTVEVDTPSGKVARSFVVDKDSPVQVITLNV*CVGNHARVLYCSEVLR 543
Query: 96 C*T 88
C*T
Sbjct: 544 C*T 552
Score = 398 bits (863), Expect = e-110
Identities = 161/184 (87%), Positives = 164/184 (89%)
Frame = -1 / +3
Query: 637 R*GRSSWWDRCARSYQPSGRRNHM*FPGQARHTGSPDLDY*VGCHSRERAHTS**SRGVP 458
R G SWWDRCARSYQPS RNHM FPGQARHT SPDLDY*+GCHSRE HTS**SRGVP
Sbjct: 3 RTGCPSWWDRCARSYQPSSGRNHMRFPGQARHTRSPDLDY*IGCHSRE*THTS**SRGVP 182
Query: 457 PGSICTSCCGGNHPLGILGDVYVSRARPSGRC*WDNQRGWQEVPCSQTRVADPYERQCRS 278
P SICTSCC GNHPLGILGDVYVSRAR SG C*WDNQRGWQ+VPCSQTRVADPY+RQCRS
Sbjct: 183 PRSICTSCCRGNHPLGILGDVYVSRARASGGC*WDNQRGWQKVPCSQTRVADPYQRQCRS 362
Query: 277 PRRV*VQRIPWFVHSGSEHAFRQGS*IVCC*QG*PGSGDRSECLMCGKSCACPVF*RCTE 98
PRRV*VQRIPWFVH GS HAFRQGS*IVCC* G*PGSGD SECLMCGKSC CPV *R TE
Sbjct: 363 PRRV*VQRIPWFVHRGSGHAFRQGS*IVCC**G*PGSGDHSECLMCGKSCTCPVL*RGTE 542
Query: 97 VLNT 86
VLNT
Sbjct: 543 VLNT 554
Score = 378 bits (819), Expect = e-104
Identities = 158/182 (86%), Positives = 164/182 (90%)
Frame = +1 / -1
Query: 88 CSTPQYIAKIQDRRMISHTLNIQSDHLNRAILVNNKRSSYLA*RRVHFHCVRTMVSSELK 267
CSTPQY+A IQD MISHTLNIQSDHLNRAIL+NNKRSSYLA*RRVHFH VRTMVSSELK
Sbjct: 552 CSTPQYLATIQDTCMISHTLNIQSDHLNRAILINNKRSSYLA*RRVHFHGVRTMVSSELK 373
Query: 268 LSLVIDTAVHTGQPLLFESKVPPASLVDCPISIDQMGVLSKHKHLPESPEDDSPHSRMCK 447
LSL ID AV TGQPLLFESKVP ASLVDCPISI QM VLSKHKHLPESP+DDSP+SRMCK
Sbjct: 372 LSLAIDIAVGTGQPLLFESKVPSASLVDCPISIHQMRVLSKHKHLPESPKDDSPYSRMCK 193
Query: 448 CFPEEHL*IISSYVLVLCCDIQLSNPDRETQYGELVQGITYDFSYRMADMTLHTDPTNWS 627
CF EEHL*IISSYV +LCCDIQ SNPDRET YGELVQGI YDFS+ MADMTLHTDPTNW
Sbjct: 192 CFAEEHL*IISSYVFILCCDIQFSNPDRET*YGELVQGIAYDFSHWMADMTLHTDPTNWG 13
Query: 628 AP 633
P
Sbjct: 12 TP 7
Score = 376 bits (815), Expect = e-103
Identities = 160/183 (87%), Positives = 162/183 (88%)
Frame = +2 / -2
Query: 89 VQHLSTSLKYRTGA*FPTH*TFRAIT*TGLSLSTTNDLATLPEGVFTSTVYEPWYPLNLN 268
VQHLSTSL+YRT A*FPTH*TFR IT*TGLSLSTTNDLATLPEGV TSTVYEPWYPLNLN
Sbjct: 551 VQHLSTSLQYRTRA*FPTH*TFRVIT*TGLSLSTTNDLATLPEGVSTSTVYEPWYPLNLN 372
Query: 269 SPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACSRNINISQNPQRMIPPTAGCXX 448
SPW STLP +RVSHSCLRARYLLPASLIVPSASTR ACSRNINISQNPQRMIPPTAGC
Sbjct: 371 SPWRSTLPLVRVSHSCLRARYLLPASLIVPSASTRCACSRNINISQNPQRMIPPTAGCAN 192
Query: 449 XXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRESHMISPTGWLI*PCTPIPPTGA 628
MCSFSAVTSNSVIQIGRPSMASLSRESHMISPTGWLI*PCTPIPPTGA
Sbjct: 191 ASRRNTSRSSARMCSFSAVTSNSVIQIGRPSMASLSRESHMISPTGWLI*PCTPIPPTGA 12
Query: 629 PLS 637
P S
Sbjct: 11 PRS 3
Score = 368 bits (798), Expect = e-101
Identities = 158/183 (86%), Positives = 160/183 (87%)
Frame = +3 / -3
Query: 84 SVFNTSVHR*NTGQAHDFPHIKHSERSPEPGYPCQQQTI*LPCLKACSLPLCTNHGIL*T 263
+VFNTSV R NTG HDFPHIKHSE SPEPGYP QQQTI*LPCLKAC LP CTNHGIL*T
Sbjct: 556 AVFNTSVPRYNTGHVHDFPHIKHSE*SPEPGYPYQQQTI*LPCLKACPLPRCTNHGIL*T 377
Query: 264 *TLLGDRHCRSYGSATLV*EQGTSCQPR*LSHQHRPDGRALET*TSPRIPRG*FPPQQDV 443
*TLLGDRHCR YGSATLV*EQGT CQPR*LSHQH PD RALET*TSPRIP+G*FP QQDV
Sbjct: 376 *TLLGDRHCRWYGSATLV*EQGTFCQPR*LSHQHPPDARALET*TSPRIPKG*FPLQQDV 197
Query: 444 QMLPGGTPLDHQLVCARSLL*HPTQ*SRSGDPVWRACPGNHI*FLLPDG*YDLAHRSHQL 623
QML GGTPLDHQLVC SLL*HP Q*SRSGD VWRACPGN I*FL DG*YDLAHRSHQL
Sbjct: 196 QMLRGGTPLDHQLVCVHSLL*HPIQ*SRSGDLVWRACPGNRI*FLPLDG*YDLAHRSHQL 17
Query: 624 ERP 632
P
Sbjct: 16 GHP 8
Score = 262 bits (567), Expect(2) = 5e-081
Identities = 116/135 (85%), Positives = 120/135 (88%)
Frame = -3 / +2
Query: 632 GALQLVGSVCKVISAIR*EKSYVIPWTSSPYWVSRSGLLSWMSQQRTSTYELMI*RCSSG 453
G QLVGSVCKVISAI+ EKSY IPWTSSPY VSRSGLL+WMSQQR +TYELMI*RCSS
Sbjct: 8 GVPQLVGSVCKVISAIQWEKSYAIPWTSSPY*VSRSGLLNWMSQQRMNTYELMI*RCSSA 187
Query: 452 KHLHILLWGESSSGDSGRCLCFESTPIWSMLMGQSTRLAGGTLLSNKSG*PV*TAVSITK 273
KHLHILL GESS GDSGRCLCFEST IW MLMGQSTRLA GTLLSNKSG*PV TA+SI K
Sbjct: 188 KHLHILL*GESSFGDSGRCLCFESTRIWWMLMGQSTRLAEGTLLSNKSG*PVPTAMSIAK 367
Query: 272 ESLSSEDTMVRTQWK 228
ESLSSEDTMVRT WK
Sbjct: 368 ESLSSEDTMVRTPWK 412
Score = 60.2 bits (125), Expect(2) = 5e-081
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -3 / +2
Query: 170 FR*SL*MFNVWEIMRLSCILAMY*GVEHR 84
FR*SL*MFNVWEIM +SCI+A Y*GVEHR
Sbjct: 470 FR*SL*MFNVWEIMHVSCIVARY*GVEHR 556
>gb|CX609043.1|CX609043 ANR1_10_G05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_G05_A002 3', mRNA sequence
Length = 769
Score = 276 bits (597), Expect = 2e-073
Identities = 105/174 (60%), Positives = 139/174 (79%)
Frame = -2 / +2
Query: 636 DRGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFL 457
++GAPVGG+G+QGH+S+PVG +I LD+LA+LGLPIW TE+DV++ NEH+RADDLEV L
Sbjct: 5 EQGAPVGGVGLQGHVSNPVGPVIRSVLDRLAVLGLPIWFTEVDVSSANEHVRADDLEVML 184
Query: 456 REAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDH 277
REA+AHPAV G++LWGFWE+FM R+ AHLVDA+G +NEAGRR L LK+EWLT +G D
Sbjct: 185 REAYAHPAVEGVMLWGFWELFMSRDDAHLVDAEGQVNEAGRRLLQLKREWLTHSHGHADE 364
Query: 276 QGEFKFRGYHGSYTVEVNTPSGKVARSFVVDKDSPVQVIALNV*CVGNHAPVLY 115
GE+KFRG+HG Y V+V TP+GKV+++F VDKD V+ + V* H +++
Sbjct: 365 NGEYKFRGHHGEYHVDVTTPTGKVSQTFTVDKDDAPLVLNIKV*QQCVHVQIMH 526
Score = 169 bits (363), Expect = 4e-041
Identities = 82/153 (53%), Positives = 88/153 (57%)
Frame = +2 / -2
Query: 179 SLSTTNDLATLPEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVP 358
SLST N TLP GV TST Y PW+P NL SP+ S P VSHS L PASL P
Sbjct: 462 SLSTVNVWETLPVGVVTSTWYSPWWPRNLYSPFSSAWPCECVSHSRLSCSSRRPASLTCP 283
Query: 359 SASTRWACSRNINISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRP 538
SASTR A SR + SQNPQ M P TAGC CSF+ TS SV QIGRP
Sbjct: 282 SASTRCASSRLMKSSQNPQSMTPSTAGCAYASRSITSRSSARTCSFADDTSTSVNQIGRP 103
Query: 539 SMASLSRESHMISPTGWLI*PCTPIPPTGAPLS 637
S AS S + PTG L PC+P PPTGAP S
Sbjct: 102 STASRSSTERITGPTGLLTWPCSPTPPTGAPCS 4
Score = 114 bits (243), Expect = 2e-024
Identities = 52/151 (34%), Positives = 87/151 (57%)
Frame = +1 / -1
Query: 160 DHLNRAILVNNKRSSYLA*RRVHFHCVRTMVSSELKLSLVIDTAVHTGQPLLFESKVPPA 339
+H R +LV+ + LA H V +V++EL L++++ AV +PL E + P A
Sbjct: 481 EHQGRVVLVDGECLGDLAGGGGHVDVVLAVVAAELVLAVLVGVAVRVREPLALELQQPAA 302
Query: 340 SLVDCPISIDQMGVLSKHKHLPESPEDDSPHSRMCKCFPEEHL*IISSYVLVLCCDIQLS 519
LVD P+ +D++ V++ H+ LPE PE D+ H R+ P+ HL ++ ++VLV + L
Sbjct: 301 CLVDLPLGVDEVRVVAAHEELPEPPEHDALHGRVRVRLPQHHLQVVGAHVLVRRRHVHLR 122
Query: 520 NPDRETQYGELVQGITYDFSYRMADMTLHTD 612
PDR+ ++GE V+ +R+AD+ L D
Sbjct: 121 EPDRQAEHGEPVEHGADHRPHRVADVALQPD 29
>gb|CW175361.1|CW175361 104_587_11157896_116_36569_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157896, DNA
sequence
Length = 532
Score = 262 bits (567), Expect = 3e-069
Identities = 97/148 (65%), Positives = 126/148 (85%)
Frame = -2 / -2
Query: 636 DRGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFL 457
++GAPVGG+G+QGH+S+PVG +I LD+LA+LGLPIW TE+DV++ NEH+RADDLEV L
Sbjct: 444 EQGAPVGGVGLQGHVSNPVGPVIRSVLDRLAVLGLPIWFTEVDVSSANEHVRADDLEVML 265
Query: 456 REAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDH 277
REA+AHPAV G++LWGFWE+FM R+ AHLVDA+G +NEAGRR L LK+EWLT +G D
Sbjct: 264 REAYAHPAVEGVMLWGFWELFMSRDDAHLVDAEGQVNEAGRRLLQLKREWLTHSHGHADE 85
Query: 276 QGEFKFRGYHGSYTVEVNTPSGKVARSF 193
GE+KFRG+HG Y V+V TP+GKV+++F
Sbjct: 84 NGEYKFRGHHGEYHVDVTTPTGKVSQTF 1
Score = 161 bits (346), Expect = 1e-038
Identities = 77/144 (53%), Positives = 83/144 (57%)
Frame = +2 / +2
Query: 206 TLPEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACS 385
TLP GV TST Y PW+P NL SP+ S P VSHS L PASL PSASTR A S
Sbjct: 14 TLPVGVVTSTWYSPWWPRNLYSPFSSAWPCECVSHSRLSCSSRRPASLTCPSASTRCASS 193
Query: 386 RNINISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRES 565
R + SQNPQ M P TAGC CSF+ TS SV QIGRPS AS S
Sbjct: 194 RLMKSSQNPQSMTPSTAGCAYASRSITSRSSARTCSFADDTSTSVNQIGRPSTASRSSTE 373
Query: 566 HMISPTGWLI*PCTPIPPTGAPLS 637
+ PTG L PC+P PPTGAP S
Sbjct: 374 RITGPTGLLTWPCSPTPPTGAPCS 445
Score = 107 bits (229), Expect = 1e-022
Identities = 46/129 (35%), Positives = 78/129 (60%)
Frame = +1 / +1
Query: 226 HFHCVRTMVSSELKLSLVIDTAVHTGQPLLFESKVPPASLVDCPISIDQMGVLSKHKHLP 405
H V ++V++EL L++++ AV +PL E + P A LVD P+ +D++ V++ H+ LP
Sbjct: 34 HVDVVLSVVAAELVLAVLVGVAVRVREPLALELQQPAACLVDLPLGVDEVRVVAAHEELP 213
Query: 406 ESPEDDSPHSRMCKCFPEEHL*IISSYVLVLCCDIQLSNPDRETQYGELVQGITYDFSYR 585
E PE D+ H R+ P+ HL ++ ++VLV + L PDR+ ++GE V+ +R
Sbjct: 214 EPPEHDALHGRVRVRLPQHHLQVVGAHVLVRRRHVHLREPDRQAEHGEPVEHGADHRPHR 393
Query: 586 MADMTLHTD 612
+AD+ L D
Sbjct: 394 VADVALQPD 420
>gb|CX618544.1|CX618544 GABR1_40_F04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_40_F04_A002 3', mRNA sequence
Length = 560
Score = 253 bits (546), Expect = 2e-066
Identities = 97/162 (59%), Positives = 127/162 (78%)
Frame = -2 / +3
Query: 600 GHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLREAFAHPAVGGI 421
GH+S+PVG +I LD+LA+LGLPIW TE+DV++ NEH+RADDLEV LREA+AHPAV G+
Sbjct: 3 GHVSNPVGPVIRSVLDRLAVLGLPIWFTEVDVSSANEHVRADDLEVMLREAYAHPAVEGV 182
Query: 420 ILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQGEFKFRGYHGS 241
+LWGFWE+FM R+ AHLVDA+G +NEAGRR L LK+EWLT +G D GE+KFRG+HG
Sbjct: 183 MLWGFWELFMSRDDAHLVDAEGQVNEAGRRLLQLKREWLTHSHGHADENGEYKFRGHHGE 362
Query: 240 YTVEVNTPSGKVARSFVVDKDSPVQVIALNV*CVGNHAPVLY 115
Y V+V TP+GKV+++F VDKD V+ + V* H +++
Sbjct: 363 YHVDVTTPTGKVSQTFTVDKDDAPLVLNIKV*QQCVHVQIMH 488
Score = 141 bits (303), Expect = 8e-033
Identities = 72/141 (51%), Positives = 77/141 (54%)
Frame = +2 / -2
Query: 179 SLSTTNDLATLPEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVP 358
SLST N TLP GV TST Y PW+P NL SP+ S P VSHS L PASL P
Sbjct: 424 SLSTVNVWETLPVGVVTSTWYSPWWPRNLYSPFSSAWPCECVSHSRLSCSSRRPASLTCP 245
Query: 359 SASTRWACSRNINISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRP 538
SASTR A SR + SQNPQ M P TAGC CSF+ TS SV IGRP
Sbjct: 244 SASTRCASSRLMKSSQNPQSMTPSTAGCAYASRSITSRSSARTCSFADDTSTSVNHIGRP 65
Query: 539 SMASLSRESHMISPTGWLI*P 601
S AS S + PTG L P
Sbjct: 64 STASRSSTERITGPTGLLTWP 2
Score = 105 bits (225), Expect = 5e-022
Identities = 49/146 (33%), Positives = 84/146 (57%)
Frame = +1 / -1
Query: 160 DHLNRAILVNNKRSSYLA*RRVHFHCVRTMVSSELKLSLVIDTAVHTGQPLLFESKVPPA 339
+H R +LV+ + LA H V +V++EL L++++ AV +PL E + P A
Sbjct: 443 EHQGRVVLVDGECLGDLAGGGGHVDVVLAVVAAELVLAVLVGVAVRVREPLALELQQPAA 264
Query: 340 SLVDCPISIDQMGVLSKHKHLPESPEDDSPHSRMCKCFPEEHL*IISSYVLVLCCDIQLS 519
LVD P+ +D++ V++ H+ LPE PE D+ H R+ P+ HL ++ ++VLV + L
Sbjct: 263 CLVDLPLGVDEVRVVAAHEELPEPPEHDALHGRVRVRLPQHHLQVVGAHVLVRRRHVHLR 84
Query: 520 NPDRETQYGELVQGITYDFSYRMADM 597
P R+ ++GE V+ +R+AD+
Sbjct: 83 EPYRQAEHGEPVEHGADHRPHRVADV 6
>gb|CL156438.1|CL156438 104_343_10782862_116_31476_190 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782862, DNA
sequence
Length = 493
Score = 227 bits (490), Expect = 1e-058
Identities = 87/145 (60%), Positives = 113/145 (77%)
Frame = -2 / -3
Query: 633 RGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLR 454
RGAPVGGIGVQGH++HPVG+II D+LDKLA+ GLP+WITELDV+A +E +RADDLE+ LR
Sbjct: 479 RGAPVGGIGVQGHVTHPVGDII*DALDKLAVTGLPVWITELDVSAADESVRADDLEIVLR 300
Query: 453 EAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLTRMNGSVDHQ 274
EA+AHPAV GI+LWGF + M+R H LV+ADG +AG + L++EW + G VD
Sbjct: 299 EAYAHPAVEGIMLWGFMQGHMWRSHGQLVNADGKYTQAGNMFAGLRREWTSHARGKVDGN 120
Query: 273 GEFKFRGYHGSYTVEVNTPSGKVAR 199
G FKFRG+HG+Y V + T +G+V +
Sbjct: 119 GNFKFRGFHGTYQVLLTTAAGEVKK 45
Score = 141 bits (303), Expect = 8e-033
Identities = 68/142 (47%), Positives = 78/142 (54%)
Frame = +2 / +1
Query: 206 TLPEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACS 385
T P V +ST Y PW PLNL P ST P HS R + PA + +PSA T W
Sbjct: 52 TSPAAVVSSTWYVPWNPLNLKLPLPSTFPRAWDVHSRRRPANMFPAWVYLPSALTSWPWE 231
Query: 386 RNINISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNSVIQIGRPSMASLSRES 565
R++ NP MIP TAGC S +A TS+SVIQ GRP ASLS S
Sbjct: 232 RHMCPCMNPHSMIPSTAGCAYASRSTISRSSARTDSSAADTSSSVIQTGRPVTASLSSAS 411
Query: 566 HMISPTGWLI*PCTPIPPTGAP 631
M+SPTG + PCTPIPPTGAP
Sbjct: 412 QMMSPTGCVTWPCTPIPPTGAP 477
>gb|CW294544.1|CW294544 104_775_11415245_116_35774_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415245, DNA
sequence
Length = 734
Score = 160 bits (345), Expect(2) = 2e-054
Identities = 60/101 (59%), Positives = 83/101 (82%)
Frame = -2 / +1
Query: 633 RGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLR 454
+GA VGGIG+QGH+++PVGE+ICD+LDKLA LP+W+TELDV+ + +RA+DLEV LR
Sbjct: 70 KGAAVGGIGLQGHVTNPVGEVICDALDKLATTDLPVWLTELDVSESDVDLRAEDLEVVLR 249
Query: 453 EAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRR 331
EA+AHPAV G++ WG + M+R+ A L++ADGT+N+AG R
Sbjct: 250 EAYAHPAVEGVMFWGLMQGHMWRQDACLINADGTVNDAGER 372
Score = 93.6 bits (198), Expect(2) = 4e-026
Identities = 45/100 (45%), Positives = 55/100 (55%)
Frame = +2 / -1
Query: 332 LLPASLIVPSASTRWACSRNINISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTS 511
L PASL VPSA R A R++ PQ M P TAGC + ++TS
Sbjct: 371 LSPASLTVPSALMRQASWRHMWPCIKPQNMTPSTAGCAYASRSTTSRSSARRSTSDSLTS 192
Query: 512 NSVIQIGRPSMASLSRESHMISPTGWLI*PCTPIPPTGAP 631
+SV Q GR +ASLS S M SPTG + PC+P+PPT AP
Sbjct: 191 SSVSQTGRSVVASLSSASQMTSPTGLVTCPCSPMPPTAAP 72
Score = 73.0 bits (153), Expect(2) = 2e-054
Identities = 27/63 (42%), Positives = 43/63 (68%)
Frame = -2 / +3
Query: 333 RYLALKQEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKVARSFVVDKDSPVQVIAL 154
R++ L++EW + G +D G FKFRGYHG+Y V++ T +GKV ++F V+K V+ +
Sbjct: 459 RFVDLRREWTSHARGHIDSAGHFKFRGYHGTYVVQLATATGKVHKTFSVEKGDTPLVLDM 638
Query: 153 NV* 145
N+*
Sbjct: 639 NL* 647
Score = 45.5 bits (93), Expect(2) = 4e-026
Identities = 23/50 (46%), Positives = 25/50 (50%)
Frame = +2 / -2
Query: 185 STTNDLATLPEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYL 334
ST N L T P V + T Y PWYPLNL P S P HS R+ L
Sbjct: 607 STENVLCTFPVAVASCTTYVPWYPLNLKWPALSICPRACDVHSLRRSTNL 458
>gb|CW351702.1|CW351702 fsbb001f013j03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f013j03, DNA
sequence
Length = 397
Score = 181 bits (390), Expect(2) = 2e-053
Identities = 68/101 (67%), Positives = 84/101 (83%)
Frame = -2 / -3
Query: 495 NEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALK 316
NEH+RADDLEV LREA AHPAV G++LWGFWE+FM R+ AHLVDA+G +NEAGRR L LK
Sbjct: 305 NEHVRADDLEVMLREASAHPAVEGVMLWGFWELFMSRDDAHLVDAEGQVNEAGRRLLQLK 126
Query: 315 QEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKVARSF 193
+EWLT +G D GE+KFRG+HG Y V+V TP+GKV+++F
Sbjct: 125 REWLTHSHGHADENGEYKFRGHHGEYHVDVTTPTGKVSQTF 3
Score = 104 bits (222), Expect(2) = 6e-025
Identities = 50/98 (51%), Positives = 54/98 (55%)
Frame = +2 / +1
Query: 206 TLPEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVPSASTRWACS 385
TLP GV TST Y PW+P NL SP+ S P VSHS L PASL PSASTR A S
Sbjct: 16 TLPVGVVTSTWYSPWWPRNLYSPFSSAWPCECVSHSRLSCSSRRPASLTCPSASTRCASS 195
Query: 386 RNINISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFS 499
R + SQNPQ M P TAGC CSF+
Sbjct: 196 RLMKSSQNPQSMTPSTAGCADASRSITSRSSARTCSFA 309
Score = 48.7 bits (100), Expect(2) = 2e-053
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -2 / -2
Query: 585 PVGEIICDSLDKLAILGLPIWITELDVTA 499
PVG +I LD+LA+LGLPIW TE+DV++
Sbjct: 396 PVGPVIRSVLDRLAVLGLPIWFTEVDVSS 310
Score = 30.4 bits (60), Expect(2) = 6e-025
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2 / +2
Query: 506 TSNSVIQIGRPSMASLSRESHMISPTG 586
TS SV IGRPS A S + PTG
Sbjct: 317 TSTSVNHIGRPSTARRSSTERITGPTG 397
>gb|CW030366.1|CW030366 104_258_10500202_116_30404 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500202, DNA
sequence
Length = 834
Score = 167 bits (359), Expect(2) = 9e-053
Identities = 61/108 (56%), Positives = 85/108 (78%)
Frame = -2 / +3
Query: 534 LPIWITELDVTAENEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADG 355
LP+W TELDV ++ +RADDLEV +REAFAHPAV G++LWGF + M+R+ A LV+ADG
Sbjct: 138 LPVWFTELDVCEPDDALRADDLEVVMREAFAHPAVQGVVLWGFMQGHMWRQDAALVNADG 317
Query: 354 TINEAGRRYLALKQEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSG 211
T+N+AGRR++ L++EW + G +D G+FKFRG+HG+Y +V TP+G
Sbjct: 318 TVNDAGRRFVELRREWTSDARGRLDADGQFKFRGFHGNYVAQVTTPAG 461
Score = 61.1 bits (127), Expect(2) = 9e-053
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = -2 / +3
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLA 544
GA VGG+G+QGH++HPVGE+ICD+LD LA
Sbjct: 39 GARVGGVGLQGHVTHPVGEVICDALDALA 125
>gb|BE358718.1|BE358718 DG1_31_B05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 596
Score = 167 bits (359), Expect(2) = 9e-053
Identities = 61/108 (56%), Positives = 85/108 (78%)
Frame = -2 / +3
Query: 534 LPIWITELDVTAENEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADG 355
LP+W TELDV ++ +RADDLEV +REAFAHPAV G++LWGF + M+R+ A LV+ADG
Sbjct: 102 LPVWFTELDVCEPDDALRADDLEVVMREAFAHPAVQGVVLWGFMQGHMWRQDAALVNADG 281
Query: 354 TINEAGRRYLALKQEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSG 211
T+N+AGRR++ L++EW + G +D G+FKFRG+HG+Y +V TP+G
Sbjct: 282 TVNDAGRRFVELRREWTSDARGRLDADGQFKFRGFHGNYVAQVTTPAG 425
Score = 61.1 bits (127), Expect(2) = 9e-053
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = -2 / +3
Query: 630 GAPVGGIGVQGHISHPVGEIICDSLDKLA 544
GA VGG+G+QGH++HPVGE+ICD+LD LA
Sbjct: 3 GARVGGVGLQGHVTHPVGEVICDALDALA 89
>gb|CD234363.1|CD234363 SS1_27_F06.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_27_F06_A012 3', mRNA sequence
Length = 601
Score = 204 bits (439), Expect = 1e-051
Identities = 79/135 (58%), Positives = 104/135 (77%)
Frame = -2 / +1
Query: 519 TELDVTAENEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEA 340
TE+DV++ NEH+RADDLEV LREA+AHPAV G++LWGFWE+FM R+ AHLVDA+G +NEA
Sbjct: 1 TEVDVSSANEHVRADDLEVMLREAYAHPAVEGVMLWGFWELFMSRDDAHLVDAEGQVNEA 180
Query: 339 GRRYLALKQEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKVARSFVVDKDSPVQVI 160
GRR L LK+EWLT +G D GE+KFRG+HG Y V+V T +GKV+++F VDKD V+
Sbjct: 181 GRRLLQLKREWLTHSHGHADENGEYKFRGHHGEYHVDVTTATGKVSQTFTVDKDDAPLVL 360
Query: 159 ALNV*CVGNHAPVLY 115
+ V* H +++
Sbjct: 361 NIKV*QQCVHVQIMH 405
Score = 113 bits (241), Expect = 3e-024
Identities = 57/113 (50%), Positives = 61/113 (53%)
Frame = +2 / -3
Query: 179 SLSTTNDLATLPEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVP 358
SLST N TLP V TST Y PW+P NL SP+ S P VSHS L PASL P
Sbjct: 341 SLSTVNVWETLPVAVVTSTWYSPWWPRNLYSPFSSAWPCECVSHSRLSCSSRRPASLTCP 162
Query: 359 SASTRWACSRNINISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFSAVTSNS 517
SASTR A SR + SQNPQ M P TAGC CSF+ TS S
Sbjct: 161 SASTRCASSRLMKSSQNPQSMTPSTAGCAYASRSITSRSSARTCSFADDTSTS 3
>gb|CL181620.1|CL181620 104_392_10896872_116_31926_248 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896872, DNA
sequence
Length = 652
Score = 197 bits (425), Expect = 1e-049
Identities = 76/127 (59%), Positives = 98/127 (77%)
Frame = -2 / -3
Query: 495 NEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALK 316
NEH+RADDLEV LREA+AHPAV G++LWGFWE+FM R+ AHLVDA+G +NEAGRR L LK
Sbjct: 647 NEHVRADDLEVMLREAYAHPAVEGVMLWGFWELFMSRDDAHLVDAEGQVNEAGRRLLQLK 468
Query: 315 QEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKVARSFVVDKDSPVQVIALNV*CVG 136
+EWLT +G D GE+KFRG+HG Y V+V TP+GKV+++F VDKD V+ + V*
Sbjct: 467 REWLTHSHGHADENGEYKFRGHHGEYHVDVTTPTGKVSQTFTVDKDDAPLVLNIKV*QQC 288
Query: 135 NHAPVLY 115
H +++
Sbjct: 287 VHVQIMH 267
Score = 112 bits (239), Expect = 5e-024
Identities = 55/107 (51%), Positives = 59/107 (55%)
Frame = +2 / +1
Query: 179 SLSTTNDLATLPEGVFTSTVYEPWYPLNLNSPW*STLPFIRVSHSCLRARYLLPASLIVP 358
SLST N TLP GV TST Y PW+P NL SP+ S P VSHS L PASL P
Sbjct: 331 SLSTVNVWETLPVGVVTSTWYSPWWPRNLYSPFSSAWPCECVSHSRLSCSSRRPASLTCP 510
Query: 359 SASTRWACSRNINISQNPQRMIPPTAGCXXXXXXXXXXXXXXMCSFS 499
SASTR A SR + SQNPQ M P TAGC CSF+
Sbjct: 511 SASTRCASSRLMKSSQNPQSMTPSTAGCAYASRSITSRSSARTCSFA 651
>gb|CW380242.1|CW380242 fsbb001f059p02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059p02, DNA
sequence
Length = 638
Score = 161 bits (346), Expect(2) = 8e-045
Identities = 61/112 (54%), Positives = 82/112 (73%)
Frame = -2 / -3
Query: 534 LPIWITELDVTAENEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADG 355
LP+WITELDV+A +E +RADDLE+ LREA+AHPAV GI+LWGF + M+R H LV+ADG
Sbjct: 582 LPVWITELDVSAADESVRADDLEIVLREAYAHPAVEGIMLWGFMQGHMWRSHGQLVNADG 403
Query: 354 TINEAGRRYLALKQEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKVAR 199
+AG + L++EW + G VD G FKFRG+HG+Y V + T +G+V +
Sbjct: 402 KYTQAGNMFAGLRREWTSHARGKVDGNGNFKFRGFHGTYQVLLTTAAGEVKK 247
Score = 40.5 bits (82), Expect(2) = 8e-045
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = -2 / -2
Query: 588 HPVGEIICDSLDKLAILG 535
HPVG+IICD+LDKLA+ G
Sbjct: 637 HPVGDIICDALDKLAVTG 584
>gb|BE362683.1|BE362683 DG1_88_H08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 385
Score = 168 bits (362), Expect = 6e-041
Identities = 64/117 (54%), Positives = 86/117 (73%)
Frame = -2 / +2
Query: 549 LAILGLPIWITELDVTAENEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHL 370
LA+ GLP+WITELDV+A +E +RADDLE+ LREA+AHPAV GI+LWGF + M+R H L
Sbjct: 2 LAVTGLPVWITELDVSAADESVRADDLEIVLREAYAHPAVEGIMLWGFMQGHMWRSHGQL 181
Query: 369 VDADGTINEAGRRYLALKQEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKVAR 199
V+ADG +AG + L++EW + G VD G FKFRG+HG+Y V + T +G+V +
Sbjct: 182 VNADGKYTQAGNMFAGLRREWTSHARGKVDGNGNFKFRGFHGTYQVLLTTAAGEVKK 352
>gb|CL184899.1|CL184899 104_398_10899163_114_32368_072 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899163, DNA
sequence
Length = 690
Score = 158 bits (340), Expect = 6e-038
Identities = 60/81 (74%), Positives = 73/81 (90%)
Frame = -2 / -1
Query: 633 RGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLR 454
RGAPVGGIGVQGH++HPVG+IICD+LDKLA+ GLP+WITELDV+A +E +RADDLE+ LR
Sbjct: 243 RGAPVGGIGVQGHVTHPVGDIICDALDKLAVTGLPVWITELDVSAADESVRADDLEIVLR 64
Query: 453 EAFAHPAVGGIILWGFWEMFM 391
EA+AHPAV GI+LWGF + M
Sbjct: 63 EAYAHPAVEGIMLWGFMQGHM 1
>gb|CW294545.1|CW294545 104_775_11415245_148_35775_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415245, DNA
sequence
Length = 697
Score = 102 bits (218), Expect(2) = 5e-037
Identities = 38/68 (55%), Positives = 54/68 (79%)
Frame = -2 / -3
Query: 534 LPIWITELDVTAENEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADG 355
LP+W+TELDV+ + +RA+DLEV LREA+AHPAV G++ WG + M+R+ A L++ADG
Sbjct: 686 LPVWLTELDVSESDVDLRAEDLEVVLREAYAHPAVEGVMFWGLMQGHMWRQDACLINADG 507
Query: 354 TINEAGRR 331
T+N+AG R
Sbjct: 506 TVNDAGER 483
Score = 73.0 bits (153), Expect(2) = 5e-037
Identities = 27/63 (42%), Positives = 43/63 (68%)
Frame = -2 / -2
Query: 333 RYLALKQEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKVARSFVVDKDSPVQVIAL 154
R++ L++EW + G +D G FKFRGYHG+Y V++ T +GKV ++F V+K V+ +
Sbjct: 396 RFVDLRREWTSHARGHIDSAGHFKFRGYHGTYVVQLATATGKVHKTFSVEKGDTPLVLDM 217
Query: 153 NV* 145
N+*
Sbjct: 216 NL* 208
>gb|BE356353.1|BE356353 DG1_124_C04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 135 bits (289), Expect = 7e-031
Identities = 51/99 (51%), Positives = 70/99 (70%)
Frame = -2 / +2
Query: 495 NEHIRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALK 316
+E +RADDLE+ LREA+AHPAV GI+LWGF + M+R H LV+ADG +AG + L+
Sbjct: 11 DESVRADDLEIVLREAYAHPAVEGIMLWGFMQGHMWRSHGQLVNADGKYTQAGNMFAGLR 190
Query: 315 QEWLTRMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKVAR 199
+EW + G VD G FKFRG+HG+Y V + T +G+V +
Sbjct: 191 REWTSHARGKVDGNGNFKFRGFHGTYQVLLTTAAGEVKK 307
>gb|CW380243.1|CW380243 fsbb001f059p02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059p02, DNA
sequence
Length = 484
Score = 133 bits (284), Expect = 3e-030
Identities = 50/66 (75%), Positives = 61/66 (92%)
Frame = -2 / +1
Query: 633 RGAPVGGIGVQGHISHPVGEIICDSLDKLAILGLPIWITELDVTAENEHIRADDLEVFLR 454
RGAPVGGIGVQGH++HPVG+IICD+LDKLA+ GLP+WITELDV+A +E +RADDLE+ LR
Sbjct: 280 RGAPVGGIGVQGHVTHPVGDIICDALDKLAVTGLPVWITELDVSAADESVRADDLEIVLR 459
Query: 453 EAFAHP 436
EA+A P
Sbjct: 460 EAYAPP 477
>gb|BE362731.1|BE362731 DG1_88_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 356
Score = 122 bits (262), Expect = 4e-027
Identities = 48/92 (52%), Positives = 63/92 (68%)
Frame = -2 / +2
Query: 480 ADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEAGRRYLALKQEWLT 301
ADDLE+ LREA+AHPAV GI+LWGF + M+R H LV ADG +AG + L++EW +
Sbjct: 2 ADDLEIVLREAYAHPAVEGIMLWGFMQGHMWRSHGQLVYADGKYTQAGNMFAGLRREWTS 181
Query: 300 RMNGSVDHQGEFKFRGYHGSYTVEVNTPSGKV 205
G V G FKFRG+HG+Y V + T +G+V
Sbjct: 182 HARGKVVGNGNFKFRGFHGTYQVLLTTAAGEV 277
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 886,485,060
Number of Sequences: 832831
Number of extensions: 14708407
Number of successful extensions: 126363
Number of sequences better than 1.0e-020: 18
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18904149054
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)