TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2568371.2.1
         (782 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW565409.1|AW565409  LG1_343_G07.g1_A002 Light Grown 1 (L...   108   2e-048
gb|CD427188.1|CD427188  SA1_18_F03.b1_A002 Salicylic acid-tr...    38   3e-021
>gb|AW565409.1|AW565409 LG1_343_G07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 646

 Score =  108 bits (231), Expect(7) = 1e-042
 Identities = 41/42 (97%), Positives = 42/42 (100%)
 Frame = +2 / +1

                                                     
Query: 74  FWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVITAVLYIN 199
           FWVLFHLYPFAKG+LGRHGKTPVVVLVWWAFTFVITAVLYIN
Sbjct: 1   FWVLFHLYPFAKGLLGRHGKTPVVVLVWWAFTFVITAVLYIN 126

 Score =  100 bits (212), Expect(9) = 2e-048
 Identities = 41/45 (91%), Positives = 41/45 (91%)
 Frame = -3 / -3

                                                        
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQ 76
           MWGMLM STAVMTKV AHQTSTTTGVLPCLPR PLA G*RWNSTQ
Sbjct: 137 MWGMLM*STAVMTKVNAHQTSTTTGVLPCLPRRPLANG*RWNSTQ 3

 Score = 44.1 bits (90), Expect(9) = 2e-048
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = -2 / -2

                                          
Query: 331 GWLLRSIDPSRPEVVAVELLAMVGGAVLSDR 239
           GWL  +  P   EVV VELLA+VGGAVLSDR
Sbjct: 258 GWLPGASRPVVGEVVEVELLAVVGGAVLSDR 166

 Score = 35.4 bits (71), Expect(7) = 1e-042
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +3 / +3

                             
Query: 318 RSSQPSIVMHAHTCPDDD 371
           R    SIV HAHTCPDDD
Sbjct: 261 RRHPASIVKHAHTCPDDD 314

 Score = 33.1 bits (66), Expect(9) = 2e-048
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1 / -3

                           
Query: 515 WRVRRWVDQMCVGWCV 468
           WRVRRWVDQM  G  V
Sbjct: 458 WRVRRWVDQMLCGVAV 411

 Score = 32.7 bits (65), Expect(9) = 2e-048
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -3 / -2

                           
Query: 372 YHHQGRYVHA*RCWVG 325
           +HHQGRYVHA*R  +G
Sbjct: 315 HHHQGRYVHA*R*MLG 268

 Score = 29.9 bits (59), Expect(7) = 1e-042
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2 / +3

                            
Query: 566 FLLVLSRN*KMC*DVLI 616
           FLLVLSRN*KMC*  L+
Sbjct: 519 FLLVLSRN*KMC*FDLV 569

 Score = 28.1 bits (55), Expect(7) = 1e-042
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3 / +1

                    
Query: 657 LCTYLYIHY 683
           LCTYLYIHY
Sbjct: 598 LCTYLYIHY 624

 Score = 28.1 bits (55), Expect(7) = 1e-042
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2 / +1

                      
Query: 626 FFNYRTRGN*I 658
           FFNYRTRGN*+
Sbjct: 568 FFNYRTRGN*L 600

 Score = 26.7 bits (52), Expect(7) = 1e-042
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1 / +1

                            
Query: 466 HTHQPTHI*STQRRTRQ 516
           +T  P  I*STQRRTRQ
Sbjct: 409 YTATPHSI*STQRRTRQ 459

 Score = 26.7 bits (52), Expect(9) = 2e-048
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1 / -1

                    
Query: 653 NYHGYGN*K 627
           NYHGYGN*K
Sbjct: 595 NYHGYGN*K 569

 Score = 24.4 bits (47), Expect(7) = 1e-042
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3 / +2

                                
Query: 270 ARSSTATTSGREGSIDRSSQP 332
           ARSST+TTS   G     SQP
Sbjct: 197 ARSSTSTTSPTTGREAPGSQP 259

 Score = 24.4 bits (47), Expect(9) = 2e-048
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2 / -3

                     
Query: 601 THLSISGQN* 572
           THLSISGQN*
Sbjct: 554 THLSISGQN* 525

 Score = 24.0 bits (46), Expect(9) = 2e-048
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3 / -2

                     
Query: 633 LKKLNQINTS 604
           +KKLNQINTS
Sbjct: 576 IKKLNQINTS 547

 Score = 23.5 bits (45), Expect(9) = 2e-048
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2 / -3

                    
Query: 682 *CIYK*VHN 656
           *CIYK*VHN
Sbjct: 623 *CIYK*VHN 597

 Score = 21.7 bits (41), Expect(9) = 2e-048
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2 / -2

                       
Query: 475 GVCVFFTLHHQL 440
           G CV FTLH  +
Sbjct: 420 GCCVVFTLHQPI 385
>gb|CD427188.1|CD427188 SA1_18_F03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
           cDNA clone SA1_18_F03_A002 3', mRNA sequence
          Length = 489

 Score = 38.2 bits (77), Expect(7) = 3e-021
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = -2 / -2

                              
Query: 295 EVVAVELLAMVGGAVLSDR 239
           EVV VELLA+VGGAVLSDR
Sbjct: 122 EVVEVELLAVVGGAVLSDR 66

 Score = 33.1 bits (66), Expect(7) = 3e-021
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1 / -3

                           
Query: 515 WRVRRWVDQMCVGWCV 468
           WRVRRWVDQM  G  V
Sbjct: 361 WRVRRWVDQMLCGVAV 314

 Score = 32.7 bits (65), Expect(7) = 3e-021
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -3 / -2

                           
Query: 372 YHHQGRYVHA*RCWVG 325
           +HHQGRYVHA*R  +G
Sbjct: 218 HHHQGRYVHA*R*MLG 171

 Score = 29.0 bits (57), Expect(7) = 3e-021
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -3 / -3

                       
Query: 210 MWGMLMYSTAVM 175
           MWGMLM STAVM
Sbjct: 37  MWGMLMXSTAVM 2

 Score = 24.4 bits (47), Expect(7) = 3e-021
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2 / -3

                     
Query: 601 THLSISGQN* 572
           THLSISGQN*
Sbjct: 457 THLSISGQN* 428

 Score = 24.0 bits (46), Expect(7) = 3e-021
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3 / -2

                     
Query: 633 LKKLNQINTS 604
           +KKLNQINTS
Sbjct: 479 IKKLNQINTS 450

 Score = 21.7 bits (41), Expect(7) = 3e-021
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2 / -2

                       
Query: 475 GVCVFFTLHHQL 440
           G CV FTLH  +
Sbjct: 323 GCCVVFTLHQPI 288
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 798,375,479
Number of Sequences: 832831
Number of extensions: 10109590
Number of successful extensions: 96345
Number of sequences better than 1.0e-020: 3
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 24475618492
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)