TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550809.2.1
(876 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG048069.1|BG048069 OV1_27_C05.g1_A002 Ovary 1 (OV1) Sor... 407 e-115
gb|CF760167.1|CF760167 DSAF1_56_C12.b1_A011 Drought-stresse... 324 2e-087
gb|CD208240.1|CD208240 HS1_32_E02.b1_A012 Heat-shocked seed... 266 9e-082
gb|BG047742.1|BG047742 OV1_27_C05.b1_A002 Ovary 1 (OV1) Sor... 282 4e-075
gb|CF760108.1|CF760108 DSAF1_55_F01.b1_A011 Drought-stresse... 176 4e-043
gb|CF759897.1|CF759897 DSAF1_52_F10.b1_A011 Drought-stresse... 168 9e-041
>gb|BG048069.1|BG048069 OV1_27_C05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 598
Score = 407 bits (883), Expect(2) = e-115
Identities = 175/185 (94%), Positives = 179/185 (96%)
Frame = -1 / +1
Query: 699 KAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKG 520
KAIIVRLLEDVT+RRASKEHGYY+AV+QLKAISEGKVRELTGDVLFPVSFTCIT KPMKG
Sbjct: 1 KAIIVRLLEDVTNRRASKEHGYYVAVSQLKAISEGKVRELTGDVLFPVSFTCITLKPMKG 180
Query: 519 EVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSKLEKDTAVRF 340
EVMVGHVDRILKHGVFLKSGPVESIFLAEKSMS+YKYIGGENAMFMNDHSKLEKDTAVRF
Sbjct: 181 EVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSDYKYIGGENAMFMNDHSKLEKDTAVRF 360
Query: 339 KVLGFRWMEADRQFQLLATIAGDFLGPL*TASTGQTGSNVHCSLDGGWMVGSDV*N*TLL 160
KVLGFRWMEADRQFQLLATIAGDFLGPL*TASTG GSNVHCSLDGGWM GSDV N*TLL
Sbjct: 361 KVLGFRWMEADRQFQLLATIAGDFLGPL*TASTG*MGSNVHCSLDGGWMGGSDVWN*TLL 540
Query: 159 PVVWS 145
PVV S
Sbjct: 541 PVVCS 555
Score = 396 bits (859), Expect(2) = e-111
Identities = 171/184 (92%), Positives = 174/184 (94%)
Frame = +2 / -3
Query: 146 DQTTGSKV*FYTSDPTIHPPSNEQCTLEPV*PVEAVHSGPRKSPAIVARSWNWRSASIQR 325
+QTTGSKV*F+TSDP IHPPSNEQCTLEP+*PVEAVHSGPRKSPAIVARSWNWRSASIQR
Sbjct: 554 EQTTGSKV*FHTSDPPIHPPSNEQCTLEPI*PVEAVHSGPRKSPAIVARSWNWRSASIQR 375
Query: 326 NPRTLKRTAVSFSSFEWSFMNIAFSPPMYL*LLIDFSARKMLSTGPDLRNTPCLRILSTC 505
NP TLKRTAVSFSSFEWSFMNIAFSPPMYL* LIDFSARKMLSTGPD RNTPCLRILST
Sbjct: 374 NPSTLKRTAVSFSSFEWSFMNIAFSPPMYL*SLIDFSARKMLSTGPDFRNTPCLRILSTW 195
Query: 506 PTMTSPFIGFWVMQVNETGNRTSPVSSRTFPSDIAFS*LTAM**PCSFEALLCVTSSRRR 685
PTMTSPFIGF VMQVNETGN TSPVSSRTFPSDIAFS*LTA **PCS EALL VTSSRRR
Sbjct: 194 PTMTSPFIGFSVMQVNETGNSTSPVSSRTFPSDIAFS*LTAT**PCSLEALLFVTSSRRR 15
Query: 686 TMIA 697
TMIA
Sbjct: 14 TMIA 3
Score = 396 bits (858), Expect(2) = e-109
Identities = 153/183 (83%), Positives = 162/183 (88%)
Frame = -3 / +3
Query: 694 YHCASSGGCHTQEGFERAWLLHCC*SAEGNI*RESA*ANWRCSVPSFIYLHYPEAYEGRG 515
YHCASSGGCH QEGF+RAWLL C *SAEG+I*RESA*ANWRC+VPS IYLH+ EAYEG G
Sbjct: 6 YHCASSGGCHKQEGFQRAWLLRCR*SAEGDI*RESA*ANWRCTVPSLIYLHHTEAYEG*G 185
Query: 514 HGWARGQDPQAWRVPQIRTRGEHLPG*EVDE*LQVHRWGECDVHERPLEAGEGHRRALQG 335
HGW RGQDPQAW VP+I TRGEH PG*E+DE LQVHRWGECDVHERPL+AGEGH RALQG
Sbjct: 186 HGWPRGQDPQAWCVPEIWTRGEHFPG*EIDERLQVHRWGECDVHERPLKAGEGHCRALQG 365
Query: 334 PRVPLDGG*PPIPAPCYDRW*LPWAAVNCFHRSNRF*CTLLVRWWMDGWI*CVELNFATS 155
VPLDGG*PP+PAPCYD W*LPWA VNCFHR N F CTLLVRWWMDGWI*CVELNFA S
Sbjct: 366 TGVPLDGG*PPVPAPCYDCW*LPWATVNCFHRLNGFQCTLLVRWWMDGWI*CVELNFAAS 545
Query: 154 GLV 146
L+
Sbjct: 546 SLL 554
Score = 348 bits (755), Expect(2) = 3e-097
Identities = 152/184 (82%), Positives = 160/184 (86%)
Frame = +1 / -2
Query: 145 RPNHW*QSLILHIRSNHPSTI*RAMYIRTCLTCGSSSQRPKEVTSDRSKELELAVSLHPA 324
R N+W QSLI HIRS HPSTI*RAMYI T LTCGSSSQ PKEVTS+RSKELELAVSLHPA
Sbjct: 555 RANYWQQSLIPHIRSTHPSTI*RAMYIGTHLTCGSSSQWPKEVTSNRSKELELAVSLHPA 376
Query: 325 EP*DLEAHGGVLLQLRVVVHEHRILPTYVLVITHRLLSQEDALHGSGFEEHAMLEDPVHV 504
EP LEAHG VLLQL VVVHEHRILPTYVLV+ HR LSQE+ALHGS F+EH MLEDPVHV
Sbjct: 375 EPQYLEAHGSVLLQL*VVVHEHRILPTYVLVVAHRFLSQENALHGSRFQEHTMLEDPVHV 196
Query: 505 PNHDLSLHRLLGNASK*NWEQNISS*LTHFPFRYCLQLINSNVVAMLFRSPPVCDILQKT 684
NHDL+LHRL +A K*+WEQ ISS*LTHFPFRY LQL N NVVAMLF SPPVCDILQKT
Sbjct: 195 ANHDLTLHRLQCDAGK*DWEQYISS*LTHFPFRYRLQLTNGNVVAMLFGSPPVCDILQKT 16
Query: 685 HNDS 696
HNDS
Sbjct: 15 HNDS 4
Score = 193 bits (416), Expect(3) = 5e-082
Identities = 83/101 (82%), Positives = 90/101 (89%)
Frame = +3 / -1
Query: 387 TSHSPHLCTCNYSSTSQPGRCSPRVRI*GTRHA*GSCPRAQP*PLPS*ASG*CK*MKLGT 566
TSHSPHLCTC+ SS SQPG+CSPRV+I GT HA*GSCPR QP*P PS*AS *C+*M+LGT
Sbjct: 313 TSHSPHLCTCSRSSISQPGKCSPRVQISGTHHA*GSCPRGQP*PHPS*ASV*CR*MRLGT 134
Query: 567 EHLQLAHALSLQILPSAD*QQCSSHALSKPSCV*HPPEDAQ 689
HLQLAHALSLQI PSAD*+Q SSHAL KPSC+*HPPEDAQ
Sbjct: 133 VHLQLAHALSLQISPSAD*RQRSSHALWKPSCL*HPPEDAQ 11
Score = 185 bits (398), Expect(2) = 2e-069
Identities = 82/102 (80%), Positives = 86/102 (84%)
Frame = -2 / +2
Query: 698 RLSLCVFWRMSHTGGLRKSMATTLLLIS*RQYLKGKCVS*LEMFCSQFHLLALPRSL*RE 519
RLSLCVFWRMS TGGL KSMATTL L+S*R+YLKGKCVS*LEM+CSQ HL A SL*R
Sbjct: 2 RLSLCVFWRMSQTGGLPKSMATTLPLVS*RRYLKGKCVS*LEMYCSQSHLPASH*SL*RV 181
Query: 518 RSWLGTWTGSSSMACSSNPDPWRASSWLRSR*VITST*VGRM 393
RSWL TWTGSSSM CS N DPWRA SWLR+R* TST*VGRM
Sbjct: 182 RSWLATWTGSSSMVCS*NLDPWRAFSWLRNR*ATTST*VGRM 307
Score = 125 bits (267), Expect(3) = 5e-082
Identities = 51/62 (82%), Positives = 55/62 (88%)
Frame = +3 / -1
Query: 144 KTKPLVAKFNSTHQIQPSIHHLTSNVH*NLFDLWKQFTAAQGSHQRS*QGAGIGGQPPSS 323
++K L AKFNSTHQI PSIHHLTSNVH N F+LWKQFT AQGSHQ+S*QGAG GGQPPSS
Sbjct: 556 QSKLLAAKFNSTHQIHPSIHHLTSNVHWNPFNLWKQFTVAQGSHQQS*QGAGTGGQPPSS 377
Query: 324 GT 329
GT
Sbjct: 376 GT 371
Score = 99.1 bits (210), Expect(2) = 2e-069
Identities = 45/67 (67%), Positives = 47/67 (70%)
Frame = -2 / +2
Query: 344 ASRS*GSAGWRLTANXXXXXXXXXXXLGRCELLPQVKQVLMYIAR*MVDGWLDLMCRIKL 165
ASR GSAGWRLTA+ LG CELLPQVK V MYIAR*MVDGW+DLMC IKL
Sbjct: 356 ASRYWGSAGWRLTASSSSLLRLLVTSLGHCELLPQVKWVPMYIAR*MVDGWVDLMCGIKL 535
Query: 164 CYQWFGL 144
C Q F L
Sbjct: 536 CCQ*FAL 556
Score = 30.4 bits (60), Expect(2) = e-115
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / +1
Query: 143 VEPETW*VF*MLLP 102
V PETW*VF*ML+P
Sbjct: 556 VVPETW*VF*MLIP 597
Score = 29.0 bits (57), Expect(2) = e-111
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1 / -3
Query: 103 GNSI*KTYHVSGST 144
G SI*KTYHVSG+T
Sbjct: 596 GISI*KTYHVSGTT 555
Score = 28.6 bits (56), Expect(2) = 3e-097
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3 / -2
Query: 108 QHLENLPCLRFYK 146
QHL++LPCLR Y+
Sbjct: 591 QHLKDLPCLRHYR 553
Score = 27.2 bits (53), Expect(3) = 5e-082
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2 / -1
Query: 107 TASRKPTMSQVLQDQTTGSK 166
+AS++PTMSQ LQ + +K
Sbjct: 592 SASKRPTMSQALQSKLLAAK 533
Score = 23.1 bits (44), Expect(2) = e-109
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1 / +3
Query: 144 CRT*DMVGFLDA 109
C *DMVG LDA
Sbjct: 555 CSA*DMVGLLDA 590
>gb|CF760167.1|CF760167 DSAF1_56_C12.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_56_C12_A011 5', mRNA sequence
Length = 566
Score = 324 bits (701), Expect = 2e-087
Identities = 137/144 (95%), Positives = 143/144 (99%)
Frame = -1 / +3
Query: 795 TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQ 616
TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVT+RRASKEHGYY+AV+Q
Sbjct: 135 TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYVAVSQ 314
Query: 615 LKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLA 436
LKAISEGKVRELTGDVLFPVSFTCIT KPMKGEVMVGHVDRILKHGVFL+SGPVESIFLA
Sbjct: 315 LKAISEGKVRELTGDVLFPVSFTCITLKPMKGEVMVGHVDRILKHGVFLRSGPVESIFLA 494
Query: 435 EKSMSNYKYIGGENAMFMNDHSKL 364
E+SMS+YKYIGGENAMFMNDHSKL
Sbjct: 495 ERSMSDYKYIGGENAMFMNDHSKL 566
Score = 274 bits (593), Expect = 1e-072
Identities = 124/145 (85%), Positives = 125/145 (86%)
Frame = +2 / -2
Query: 365 SFEWSFMNIAFSPPMYL*LLIDFSARKMLSTGPDLRNTPCLRILSTCPTMTSPFIGFWVM 544
SFEWSFMNIAFSPPMYL* LID SARKMLSTGPDLRNTPCLRILST PTMTSPFIGF VM
Sbjct: 565 SFEWSFMNIAFSPPMYL*SLIDLSARKMLSTGPDLRNTPCLRILSTWPTMTSPFIGFSVM 386
Query: 545 QVNETGNRTSPVSSRTFPSDIAFS*LTAM**PCSFEALLCVTSSRRRTMIAXXXXXXXXX 724
QVNETGN TSPVSSRTFPSDIAFS*LTA **PCS EALL VTSSRRRTMIA
Sbjct: 385 QVNETGNSTSPVSSRTFPSDIAFS*LTAT**PCSLEALLFVTSSRRRTMIALRSRRPLRS 206
Query: 725 XXXGEINTFHDISASRKTMAEYLVS 799
GEI+TFHDISASRKTMAEYLVS
Sbjct: 205 SWLGEISTFHDISASRKTMAEYLVS 131
Score = 269 bits (582), Expect = 4e-071
Identities = 114/136 (83%), Positives = 118/136 (86%)
Frame = -2 / +1
Query: 800 HSPGIQPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMSHTGGLRKSMATTLLL 621
HSPG QPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMS TGGL KSMATTL L
Sbjct: 130 HSPGTQPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMSQTGGLPKSMATTLPL 309
Query: 620 IS*RQYLKGKCVS*LEMFCSQFHLLALPRSL*RERSWLGTWTGSSSMACSSNPDPWRASS 441
+S*R+YLKGKCVS*LEM+CSQ HL A SL*R RSWL TWTGSSSM CS + DPWRA S
Sbjct: 310 VS*RRYLKGKCVS*LEMYCSQSHLPASH*SL*RVRSWLATWTGSSSMVCS*DLDPWRAFS 489
Query: 440 WLRSR*VITST*VGRM 393
WLR R* TST*VGRM
Sbjct: 490 WLRDR*ATTST*VGRM 537
Score = 264 bits (572), Expect = 1e-069
Identities = 112/146 (76%), Positives = 119/146 (81%)
Frame = +1 / -1
Query: 364 QLRVVVHEHRILPTYVLVITHRLLSQEDALHGSGFEEHAMLEDPVHVPNHDLSLHRLLGN 543
QL VVVHEHRILPTYVLV+ HR LSQE+ALHGS +EH MLEDPVHV NHDL+LHRL +
Sbjct: 566 QL*VVVHEHRILPTYVLVVAHRSLSQENALHGSRSQEHTMLEDPVHVANHDLTLHRLQCD 387
Query: 544 ASK*NWEQNISS*LTHFPFRYCLQLINSNVVAMLFRSPPVCDILQKTHNDSXXXXXXXXX 723
A K*+WEQ ISS*LTHFPFRY LQL N NVVAMLF SPPVCDILQKTHNDS
Sbjct: 386 AGK*DWEQYISS*LTHFPFRYRLQLTNGNVVAMLFGSPPVCDILQKTHNDSLAEQEALAV 207
Query: 724 XXXR*DQHIP*HLCLKKNHG*IPGEC 801
R*DQHIP*HLCLKKNHG*+PGEC
Sbjct: 206 QLAR*DQHIP*HLCLKKNHG*VPGEC 129
Score = 238 bits (514), Expect(2) = 6e-071
Identities = 92/110 (83%), Positives = 99/110 (90%)
Frame = -3 / +2
Query: 694 YHCASSGGCHTQEGFERAWLLHCC*SAEGNI*RESA*ANWRCSVPSFIYLHYPEAYEGRG 515
YHCASSGGCH QEGF+RAWLL C *SAEG+I*RESA*ANWRC+VPS IYLH+ EAYEG G
Sbjct: 236 YHCASSGGCHKQEGFQRAWLLRCR*SAEGDI*RESA*ANWRCTVPSLIYLHHTEAYEG*G 415
Query: 514 HGWARGQDPQAWRVPQIRTRGEHLPG*EVDE*LQVHRWGECDVHERPLEA 365
HGW RGQDPQAW VP+I TRGEH PG*E+DE LQVHRWGECDVHERPL+A
Sbjct: 416 HGWPRGQDPQAWCVPEIWTRGEHFPG*EIDERLQVHRWGECDVHERPLKA 565
Score = 193 bits (416), Expect(2) = 6e-058
Identities = 83/101 (82%), Positives = 90/101 (89%)
Frame = +3 / -3
Query: 387 TSHSPHLCTCNYSSTSQPGRCSPRVRI*GTRHA*GSCPRAQP*PLPS*ASG*CK*MKLGT 566
TSHSPHLCTC+ SS SQPG+CSPRV+I GT HA*GSCPR QP*P PS*AS *C+*M+LGT
Sbjct: 543 TSHSPHLCTCSRSSISQPGKCSPRVQISGTHHA*GSCPRGQP*PHPS*ASV*CR*MRLGT 364
Query: 567 EHLQLAHALSLQILPSAD*QQCSSHALSKPSCV*HPPEDAQ 689
HLQLAHALSLQI PSAD*+Q SSHAL KPSC+*HPPEDAQ
Sbjct: 363 VHLQLAHALSLQISPSAD*RQRSSHALWKPSCL*HPPEDAQ 241
Score = 52.8 bits (109), Expect(2) = 6e-058
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +3 / -3
Query: 735 VRSTHSMTSLPQEKPWLNTW*V 800
VRS HSMTSLPQEKPWL+TW*V
Sbjct: 195 VRSAHSMTSLPQEKPWLSTW*V 130
Score = 51.5 bits (106), Expect(2) = 6e-071
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -3 / +2
Query: 799 THQVFSHGFS*GRDVMECVDLT 734
THQV SHGFS*GRDVMEC DLT
Sbjct: 131 THQVLSHGFS*GRDVMECADLT 196
>gb|CD208240.1|CD208240 HS1_32_E02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_32_E02_A012 3', mRNA sequence
Length = 478
Score = 266 bits (576), Expect(3) = 9e-082
Identities = 110/117 (94%), Positives = 113/117 (96%)
Frame = +2 / -3
Query: 146 DQTTGSKV*FYTSDPTIHPPSNEQCTLEPV*PVEAVHSGPRKSPAIVARSWNWRSASIQR 325
+QTTGSKV*F+TSDP IHPPSNEQCTLEP+*PVEAVHSGPRKSPAIVARSWNWRSASIQR
Sbjct: 353 EQTTGSKV*FHTSDPPIHPPSNEQCTLEPI*PVEAVHSGPRKSPAIVARSWNWRSASIQR 174
Query: 326 NPRTLKRTAVSFSSFEWSFMNIAFSPPMYL*LLIDFSARKMLSTGPDLRNTPCLRIL 496
NP TLKRTAVSFSSFEWSFMNIAFSPPMYL* LIDFSARKMLSTGPD RNTPCLRIL
Sbjct: 173 NPSTLKRTAVSFSSFEWSFMNIAFSPPMYL*SLIDFSARKMLSTGPDFRNTPCLRIL 3
Score = 260 bits (563), Expect(2) = 4e-078
Identities = 112/118 (94%), Positives = 113/118 (95%)
Frame = -1 / +1
Query: 498 DRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSKLEKDTAVRFKVLGFRW 319
DRILKHGVFLKSGPVESIFLAEKSMS+YKYIGGENAMFMNDHSKLEKDTAVRFKVLGFRW
Sbjct: 1 DRILKHGVFLKSGPVESIFLAEKSMSDYKYIGGENAMFMNDHSKLEKDTAVRFKVLGFRW 180
Query: 318 MEADRQFQLLATIAGDFLGPL*TASTGQTGSNVHCSLDGGWMVGSDV*N*TLLPVVWS 145
MEADRQFQLLATIAGDFLGPL*TASTG GSNVHCSLDGGWM GSDV N*TLLPVV S
Sbjct: 181 MEADRQFQLLATIAGDFLGPL*TASTG*MGSNVHCSLDGGWMGGSDVWN*TLLPVVCS 354
Score = 255 bits (552), Expect(2) = 4e-073
Identities = 98/117 (83%), Positives = 103/117 (88%)
Frame = -3 / +3
Query: 496 QDPQAWRVPQIRTRGEHLPG*EVDE*LQVHRWGECDVHERPLEAGEGHRRALQGPRVPLD 317
QDPQAW VP+I TRGEH PG*E+DE LQVHRWGECDVHERPL+AGEGH RALQG VPLD
Sbjct: 3 QDPQAWCVPEIWTRGEHFPG*EIDERLQVHRWGECDVHERPLKAGEGHCRALQGTGVPLD 182
Query: 316 GG*PPIPAPCYDRW*LPWAAVNCFHRSNRF*CTLLVRWWMDGWI*CVELNFATSGLV 146
GG*PP+PAPCYD W*LPWA VNCFHR N F CTLLVRWWMDGWI*CVELNFA S L+
Sbjct: 183 GG*PPVPAPCYDCW*LPWATVNCFHRLNGFQCTLLVRWWMDGWI*CVELNFAASSLL 353
Score = 223 bits (481), Expect(2) = 5e-067
Identities = 98/118 (83%), Positives = 103/118 (87%)
Frame = +1 / -2
Query: 145 RPNHW*QSLILHIRSNHPSTI*RAMYIRTCLTCGSSSQRPKEVTSDRSKELELAVSLHPA 324
R N+W QSLI HIRS HPSTI*RAMYI T LTCGSSSQ PKEVTS+RSKELELAVSLHPA
Sbjct: 354 RANYWQQSLIPHIRSTHPSTI*RAMYIGTHLTCGSSSQWPKEVTSNRSKELELAVSLHPA 175
Query: 325 EP*DLEAHGGVLLQLRVVVHEHRILPTYVLVITHRLLSQEDALHGSGFEEHAMLEDPV 498
EP LEAHG VLLQL VVVHEHRILPTYVLV+ HR LSQE+ALHGS F+EH MLEDPV
Sbjct: 174 EPQYLEAHGSVLLQL*VVVHEHRILPTYVLVVAHRFLSQENALHGSRFQEHTMLEDPV 1
Score = 125 bits (267), Expect(3) = 2e-052
Identities = 51/62 (82%), Positives = 55/62 (88%)
Frame = +3 / -1
Query: 144 KTKPLVAKFNSTHQIQPSIHHLTSNVH*NLFDLWKQFTAAQGSHQRS*QGAGIGGQPPSS 323
++K L AKFNSTHQI PSIHHLTSNVH N F+LWKQFT AQGSHQ+S*QGAG GGQPPSS
Sbjct: 355 QSKLLAAKFNSTHQIHPSIHHLTSNVHWNPFNLWKQFTVAQGSHQQS*QGAGTGGQPPSS 176
Query: 324 GT 329
GT
Sbjct: 175 GT 170
Score = 99.1 bits (210), Expect(3) = 2e-038
Identities = 45/67 (67%), Positives = 47/67 (70%)
Frame = -2 / +2
Query: 344 ASRS*GSAGWRLTANXXXXXXXXXXXLGRCELLPQVKQVLMYIAR*MVDGWLDLMCRIKL 165
ASR GSAGWRLTA+ LG CELLPQVK V MYIAR*MVDGW+DLMC IKL
Sbjct: 155 ASRYWGSAGWRLTASSSSLLRLLVTSLGHCELLPQVKWVPMYIAR*MVDGWVDLMCGIKL 334
Query: 164 CYQWFGL 144
C Q F L
Sbjct: 335 CCQ*FAL 355
Score = 79.0 bits (166), Expect(3) = 2e-052
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +3 / -1
Query: 387 TSHSPHLCTCNYSSTSQPGRCSPRVRI*GTRHA*GSC 497
TSHSPHLCTC+ SS SQPG+CSPRV+I GT HA*GSC
Sbjct: 112 TSHSPHLCTCSRSSISQPGKCSPRVQISGTHHA*GSC 2
Score = 65.2 bits (136), Expect(3) = 2e-038
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = -2 / +2
Query: 497 TGSSSMACSSNPDPWRASSWLRSR*VITST*VGRM 393
TGSSSM CS N DPWRA SWLR+R* TST*VGRM
Sbjct: 2 TGSSSMVCS*NLDPWRAFSWLRNR*ATTST*VGRM 106
Score = 55.6 bits (115), Expect(3) = 9e-082
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +1 / -3
Query: 58 SYRYTDTFKPELNITGNSI*KTYHVSGST 144
S +YTDTF+PE N+TG SI*KTYHVSG+T
Sbjct: 440 SSKYTDTFRPEPNVTGISI*KTYHVSGTT 354
Score = 53.3 bits (110), Expect(2) = 5e-067
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +3 / -2
Query: 60 IQVH*YVQTRAKYHWQQHLENLPCLRFYK 146
I+VH*Y+QTRAK H QHL++LPCLR Y+
Sbjct: 438 IKVH*YIQTRAKCHRYQHLKDLPCLRHYR 352
Score = 52.8 bits (109), Expect(2) = 4e-078
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -2 / +1
Query: 143 VEPETW*VF*MLLPVIFSSGLNVSVYLYDE 54
V PETW*VF*ML+PV F SGLNVSVY ++
Sbjct: 355 VVPETW*VF*MLIPVTFGSGLNVSVYFDEQ 444
Score = 42.3 bits (86), Expect(3) = 2e-052
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2 / -1
Query: 47 TLVHHTGTLIRSNQS*ISLATASRKPTMSQVLQDQTTGSK 166
T H TLI S+QS +S +AS++PTMSQ LQ + +K
Sbjct: 451 TTTVHQSTLIHSDQSQMSPVSASKRPTMSQALQSKLLAAK 332
Score = 41.4 bits (84), Expect(2) = 4e-073
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = -3 / +2
Query: 145 L*NLRHGRFSRCCCQ*YLALV*TYQCTCM 59
L* LRHGR RC +*+LALV* YQCT M
Sbjct: 353 L*CLRHGRSFRC*YR*HLALV*MYQCTLM 439
Score = 35.0 bits (70), Expect(3) = 2e-038
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = -1 / +3
Query: 144 CRT*DMVGFLDAVASDI*LWFERIS 70
C *DMVG LDA DI LW E IS
Sbjct: 354 CSA*DMVGLLDADTGDIWLWSECIS 428
Score = 22.6 bits (43), Expect(3) = 9e-082
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2 / -3
Query: 20 KHRKGTSM 43
KHRKGTSM
Sbjct: 476 KHRKGTSM 453
>gb|BG047742.1|BG047742 OV1_27_C05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 282 bits (611), Expect = 4e-075
Identities = 121/127 (95%), Positives = 125/127 (98%)
Frame = -1 / +3
Query: 795 TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQ 616
TRY AMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVT+RRASKEHGYY+AV+Q
Sbjct: 114 TRYKAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYVAVSQ 293
Query: 615 LKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLA 436
LKAISEGKVRELTGDVLFPVSFTCIT KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLA
Sbjct: 294 LKAISEGKVRELTGDVLFPVSFTCITLKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLA 473
Query: 435 EKSMSNY 415
EKSMS+Y
Sbjct: 474 EKSMSDY 494
Score = 256 bits (554), Expect = 3e-067
Identities = 107/129 (82%), Positives = 112/129 (86%)
Frame = -2 / +1
Query: 800 HSPGIQPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMSHTGGLRKSMATTLLL 621
HSPG +PWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMS TGGL KSMATTL L
Sbjct: 109 HSPGTKPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMSQTGGLPKSMATTLPL 288
Query: 620 IS*RQYLKGKCVS*LEMFCSQFHLLALPRSL*RERSWLGTWTGSSSMACSSNPDPWRASS 441
+S*R+YLKGKCVS*LEM+CSQ HL A SL*R RSWL TWTGSSSM CS N DPWRA S
Sbjct: 289 VS*RRYLKGKCVS*LEMYCSQSHLPASH*SL*RVRSWLATWTGSSSMVCS*NLDPWRAFS 468
Query: 440 WLRSR*VIT 414
WLR+R* T
Sbjct: 469 WLRNR*ATT 495
Score = 231 bits (499), Expect = 1e-059
Identities = 96/129 (74%), Positives = 103/129 (79%)
Frame = +1 / -3
Query: 415 VITHRLLSQEDALHGSGFEEHAMLEDPVHVPNHDLSLHRLLGNASK*NWEQNISS*LTHF 594
V+ HR LSQE+ALHGS F+EH MLEDPVHV NHDL+LHRL +A K*+WEQ ISS*LTHF
Sbjct: 494 VVAHRFLSQENALHGSRFQEHTMLEDPVHVANHDLTLHRLQCDAGK*DWEQYISS*LTHF 315
Query: 595 PFRYCLQLINSNVVAMLFRSPPVCDILQKTHNDSXXXXXXXXXXXXR*DQHIP*HLCLKK 774
PFRY LQL N NVVAMLF SPPVCDILQKTHNDS R*DQHIP*HLCLKK
Sbjct: 314 PFRYRLQLTNGNVVAMLFGSPPVCDILQKTHNDSLAEQEALAVQLAR*DQHIP*HLCLKK 135
Query: 775 NHG*IPGEC 801
NHG +PGEC
Sbjct: 134 NHGFVPGEC 108
Score = 230 bits (496), Expect = 3e-059
Identities = 107/129 (82%), Positives = 108/129 (83%)
Frame = +2 / -1
Query: 413 L*LLIDFSARKMLSTGPDLRNTPCLRILSTCPTMTSPFIGFWVMQVNETGNRTSPVSSRT 592
L* LIDFSARKMLSTGPD RNTPCLRILST PTMTSPFIGF VMQVNETGN TSPVSSRT
Sbjct: 496 L*SLIDFSARKMLSTGPDFRNTPCLRILSTWPTMTSPFIGFSVMQVNETGNSTSPVSSRT 317
Query: 593 FPSDIAFS*LTAM**PCSFEALLCVTSSRRRTMIAXXXXXXXXXXXXGEINTFHDISASR 772
FPSDIAFS*LTA **PCS EALL VTSSRRRTMIA GEI+TFHDISASR
Sbjct: 316 FPSDIAFS*LTAT**PCSLEALLFVTSSRRRTMIALRSRRPLRSSWLGEISTFHDISASR 137
Query: 773 KTMAEYLVS 799
KTMA YLVS
Sbjct: 136 KTMALYLVS 110
Score = 196 bits (422), Expect(2) = 6e-058
Identities = 77/94 (81%), Positives = 83/94 (88%)
Frame = -3 / +2
Query: 694 YHCASSGGCHTQEGFERAWLLHCC*SAEGNI*RESA*ANWRCSVPSFIYLHYPEAYEGRG 515
YHCASSGGCH QEGF+RAWLL C *SAEG+I*RESA*ANWRC+VPS IYLH+ EAYEG G
Sbjct: 215 YHCASSGGCHKQEGFQRAWLLRCR*SAEGDI*RESA*ANWRCTVPSLIYLHHTEAYEG*G 394
Query: 514 HGWARGQDPQAWRVPQIRTRGEHLPG*EVDE*LQ 413
HGW RGQDPQAW VP+I TRGEH PG*E+DE LQ
Sbjct: 395 HGWPRGQDPQAWCVPEIWTRGEHFPG*EIDERLQ 496
Score = 168 bits (362), Expect(2) = 5e-050
Identities = 74/92 (80%), Positives = 81/92 (88%)
Frame = +3 / -2
Query: 414 CNYSSTSQPGRCSPRVRI*GTRHA*GSCPRAQP*PLPS*ASG*CK*MKLGTEHLQLAHAL 593
C+ SS SQPG+CSPRV+I GT HA*GSCPR QP*P PS*AS *C+*M+LGT HLQLAHAL
Sbjct: 495 CSRSSISQPGKCSPRVQISGTHHA*GSCPRGQP*PHPS*ASV*CR*MRLGTVHLQLAHAL 316
Query: 594 SLQILPSAD*QQCSSHALSKPSCV*HPPEDAQ 689
SLQI PSAD*+Q SSHAL KPSC+*HPPEDAQ
Sbjct: 315 SLQISPSAD*RQRSSHALWKPSCL*HPPEDAQ 220
Score = 51.0 bits (105), Expect(2) = 5e-050
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +3 / -2
Query: 735 VRSTHSMTSLPQEKPWLNTW*V 800
VRS HSMTSLPQEKPWL TW*V
Sbjct: 174 VRSAHSMTSLPQEKPWLCTW*V 109
Score = 50.1 bits (103), Expect(2) = 6e-058
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -3 / +2
Query: 799 THQVFSHGFS*GRDVMECVDLT 734
THQV SHGFS*GRDVMEC DLT
Sbjct: 110 THQVQSHGFS*GRDVMECADLT 175
>gb|CF760108.1|CF760108 DSAF1_55_F01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F01_A011 5', mRNA sequence
Length = 387
Score = 176 bits (379), Expect = 4e-043
Identities = 71/78 (91%), Positives = 74/78 (94%)
Frame = -2 / +3
Query: 800 HSPGIQPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMSHTGGLRKSMATTLLL 621
HSPG QPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMS TGGL KSMATTL L
Sbjct: 153 HSPGTQPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMSQTGGLPKSMATTLPL 332
Query: 620 IS*RQYLKGKCVS*LEMF 567
+S*R+YLKGKCVS*LEM+
Sbjct: 333 VS*RRYLKGKCVS*LEMY 386
Score = 169 bits (363), Expect = 6e-041
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -1 / +2
Query: 795 TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQ 616
TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVT+RRASKEHGYY+AV+Q
Sbjct: 158 TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYVAVSQ 337
Query: 615 LKAISEGKVRELTGDV 568
LKAISEGKVRELTGDV
Sbjct: 338 LKAISEGKVRELTGDV 385
Score = 143 bits (306), Expect = 5e-033
Identities = 60/77 (77%), Positives = 61/77 (79%)
Frame = +1 / -3
Query: 571 ISS*LTHFPFRYCLQLINSNVVAMLFRSPPVCDILQKTHNDSXXXXXXXXXXXXR*DQHI 750
ISS*LTHFPFRY LQL N NVVAMLF SPPVCDILQKTHNDS R*DQHI
Sbjct: 382 ISS*LTHFPFRYRLQLTNGNVVAMLFGSPPVCDILQKTHNDSLAEQEALAVQLAR*DQHI 203
Query: 751 P*HLCLKKNHG*IPGEC 801
P*HLCLKKNHG*+PGEC
Sbjct: 202 P*HLCLKKNHG*VPGEC 152
Score = 127 bits (273), Expect = 2e-028
Identities = 61/77 (79%), Positives = 62/77 (80%)
Frame = +2 / -1
Query: 569 TSPVSSRTFPSDIAFS*LTAM**PCSFEALLCVTSSRRRTMIAXXXXXXXXXXXXGEINT 748
TSPVSSRTFPSDIAFS*LTA **PCS EALL VTSSRRRTMIA GEI+T
Sbjct: 384 TSPVSSRTFPSDIAFS*LTAT**PCSLEALLFVTSSRRRTMIALRSRRPLRSSWLGEIST 205
Query: 749 FHDISASRKTMAEYLVS 799
FHDISASRKTMAEYLVS
Sbjct: 204 FHDISASRKTMAEYLVS 154
Score = 95.9 bits (203), Expect(2) = 2e-028
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = -3 / +1
Query: 694 YHCASSGGCHTQEGFERAWLLHCC*SAEGNI*RESA*ANWRCS 566
YHCASSGGCH QEGF+RAWLL C *SAEG+I*RESA*ANWRC+
Sbjct: 259 YHCASSGGCHKQEGFQRAWLLRCR*SAEGDI*RESA*ANWRCT 387
Score = 81.3 bits (171), Expect(2) = 2e-024
Identities = 35/40 (87%), Positives = 37/40 (92%)
Frame = +3 / -2
Query: 570 HLQLAHALSLQILPSAD*QQCSSHALSKPSCV*HPPEDAQ 689
HLQLAHALSLQI PSAD*+Q SSHAL KPSC+*HPPEDAQ
Sbjct: 383 HLQLAHALSLQISPSAD*RQRSSHALWKPSCL*HPPEDAQ 264
Score = 52.8 bits (109), Expect(2) = 2e-024
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +3 / -2
Query: 735 VRSTHSMTSLPQEKPWLNTW*V 800
VRS HSMTSLPQEKPWL+TW*V
Sbjct: 218 VRSAHSMTSLPQEKPWLSTW*V 153
Score = 51.5 bits (106), Expect(2) = 2e-028
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -3 / +1
Query: 799 THQVFSHGFS*GRDVMECVDLT 734
THQV SHGFS*GRDVMEC DLT
Sbjct: 154 THQVLSHGFS*GRDVMECADLT 219
>gb|CF759897.1|CF759897 DSAF1_52_F10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_52_F10_A011 5', mRNA sequence
Length = 353
Score = 168 bits (362), Expect = 9e-041
Identities = 68/74 (91%), Positives = 70/74 (94%)
Frame = -2 / +1
Query: 800 HSPGIQPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMSHTGGLRKSMATTLLL 621
HSPG QPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMS TGGL KSMATTL L
Sbjct: 130 HSPGTQPWFFLRQRCHGMC*SHLASWTARASCSARLSLCVFWRMSQTGGLPKSMATTLPL 309
Query: 620 IS*RQYLKGKCVS* 579
+S*R+YLKGKCVS*
Sbjct: 310 VS*RRYLKGKCVS* 351
Score = 161 bits (347), Expect = 1e-038
Identities = 70/73 (95%), Positives = 73/73 (100%)
Frame = -1 / +3
Query: 795 TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQ 616
TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVT+RRASKEHGYY+AV+Q
Sbjct: 135 TRYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTNRRASKEHGYYVAVSQ 314
Query: 615 LKAISEGKVRELT 577
LKAISEGKVRELT
Sbjct: 315 LKAISEGKVRELT 353
Score = 139 bits (298), Expect = 6e-032
Identities = 58/75 (77%), Positives = 59/75 (78%)
Frame = +1 / -1
Query: 577 S*LTHFPFRYCLQLINSNVVAMLFRSPPVCDILQKTHNDSXXXXXXXXXXXXR*DQHIP* 756
S*LTHFPFRY LQL N NVVAMLF SPPVCDILQKTHNDS R*DQHIP*
Sbjct: 353 S*LTHFPFRYRLQLTNGNVVAMLFGSPPVCDILQKTHNDSLAEQEALAVQLAR*DQHIP* 174
Query: 757 HLCLKKNHG*IPGEC 801
HLCLKKNHG*+PGEC
Sbjct: 173 HLCLKKNHG*VPGEC 129
Score = 120 bits (257), Expect = 3e-026
Identities = 58/74 (78%), Positives = 59/74 (79%)
Frame = +2 / -2
Query: 578 VSSRTFPSDIAFS*LTAM**PCSFEALLCVTSSRRRTMIAXXXXXXXXXXXXGEINTFHD 757
VSSRTFPSDIAFS*LTA **PCS EALL VTSSRRRTMIA GEI+TFHD
Sbjct: 352 VSSRTFPSDIAFS*LTAT**PCSLEALLFVTSSRRRTMIALRSRRPLRSSWLGEISTFHD 173
Query: 758 ISASRKTMAEYLVS 799
ISASRKTMAEYLVS
Sbjct: 172 ISASRKTMAEYLVS 131
Score = 84.0 bits (177), Expect(2) = 7e-025
Identities = 34/39 (87%), Positives = 36/39 (92%)
Frame = -3 / +2
Query: 694 YHCASSGGCHTQEGFERAWLLHCC*SAEGNI*RESA*AN 578
YHCASSGGCH QEGF+RAWLL C *SAEG+I*RESA*AN
Sbjct: 236 YHCASSGGCHKQEGFQRAWLLRCR*SAEGDI*RESA*AN 352
Score = 73.5 bits (154), Expect(2) = 4e-022
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +3 / -3
Query: 579 LAHALSLQILPSAD*QQCSSHALSKPSCV*HPPEDAQ 689
LAHALSLQI PSAD*+Q SSHAL KPSC+*HPPEDAQ
Sbjct: 351 LAHALSLQISPSAD*RQRSSHALWKPSCL*HPPEDAQ 241
Score = 52.8 bits (109), Expect(2) = 4e-022
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +3 / -3
Query: 735 VRSTHSMTSLPQEKPWLNTW*V 800
VRS HSMTSLPQEKPWL+TW*V
Sbjct: 195 VRSAHSMTSLPQEKPWLSTW*V 130
Score = 51.5 bits (106), Expect(2) = 7e-025
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -3 / +2
Query: 799 THQVFSHGFS*GRDVMECVDLT 734
THQV SHGFS*GRDVMEC DLT
Sbjct: 131 THQVLSHGFS*GRDVMECADLT 196
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,109,622,998
Number of Sequences: 832831
Number of extensions: 17605479
Number of successful extensions: 113645
Number of sequences better than 1.0e-020: 6
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 28158842634
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)