TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2542042.2.1
         (691 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CW165269.1|CW165269  104_573_11152417_116_36472_005 Sorgh...   112   3e-073

>gb|CW165269.1|CW165269 104_573_11152417_116_36472_005 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11152417, DNA
           sequence
          Length = 571

 Score =  112 bits (239), Expect(3) = 3e-073
 Identities = 42/54 (77%), Positives = 46/54 (85%)
 Frame = +2 / -3

                                                                 
Query: 302 GLGDGGVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWLPAAEL 463
           G  + G  TAIAMCHANT +WD RYF+MLN TRGEEICHFMPRNYVLWLPAA+L
Sbjct: 203 GHAEAGGATAIAMCHANTTSWDARYFEMLNATRGEEICHFMPRNYVLWLPAADL 42




 Score =  108 bits (230), Expect(3) = 3e-073
 Identities = 47/67 (70%), Positives = 54/67 (80%)
 Frame = +2 / -3

                                                                       
Query: 14  EAESPEAHACATSEQAAADFAASSLGVRASKLVALVTTVHGGKDATRYVVAPNGITRIGK 193
           E+ SP+ H CATSEQAA DFAA+SLGV AS+LVA+VT V G  DA RYVVAP+G+ RIGK
Sbjct: 506 ESPSPDPHTCATSEQAATDFAAASLGVSASELVAVVTVVXGS*DAARYVVAPDGVARIGK 327

                  
Query: 194 AAGAAAV 214
           A  AAAV
Sbjct: 326 AGAAAAV 306




 Score =  101 bits (215), Expect(3) = 8e-051
 Identities = 44/64 (68%), Positives = 48/64 (75%)
 Frame = -1 / +3

                                                                       
Query: 205 GPCRLADACDAVGRHHVSSGVLPPMDGGDERDQLAGPDPERGGSEVGRRLLGGGAGMSLW 26
           G  RLADA DAV RHHV  GVL P D  D+ DQLAG DP+RGGSEVGRRLLGGGAG+ + 
Sbjct: 315 GGSRLADARDAVWRHHVPGGVLAPXDDXDDGDQLAGTDPQRGGSEVGRRLLGGGAGVRVR 494

               
Query: 25  GLSL 14
           G  L
Sbjct: 495 GRGL 506




 Score = 95.5 bits (202), Expect(3) = 3e-073
 Identities = 35/41 (85%), Positives = 38/41 (92%)
 Frame = +2 / -3

                                                    
Query: 197 AGAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGG 319
           AGAAA VPCHPM+YPYMVHYCH+PADVEALR+ELTGLG  G
Sbjct: 326 AGAAAAVPCHPMAYPYMVHYCHRPADVEALRVELTGLGGDG 204




 Score = 80.3 bits (169), Expect(3) = 8e-051
 Identities = 33/46 (71%), Positives = 38/46 (82%)
 Frame = -1 / +3

                                                         
Query: 463 KLGSW*PEHIVARHEVADLLAARHVQHLEVAIVPVHGVGVAHGDRG 326
           ++GS  P+H+V RHEVADLL AR VQHLEV+ VP  GVGVAHGDRG
Sbjct: 42  QVGSRQPQHVVPRHEVADLLPARRVQHLEVSGVPARGVGVAHGDRG 179




 Score = 76.7 bits (161), Expect(2) = 2e-027
 Identities = 33/41 (80%), Positives = 35/41 (85%)
 Frame = -2 / +1

                                                    
Query: 459 SAAGSQST*LRGMKWQISSPRVTFSIWK*RSSQFMVLAWHM 337
           SAAGS ST* RGMKWQISSPRV FSI K R+SQ +VLAWHM
Sbjct: 46  SAAGSHST*FRGMKWQISSPRVAFSISKYRASQLVVLAWHM 168




 Score = 68.9 bits (144), Expect(2) = 2e-027
 Identities = 31/42 (73%), Positives = 32/42 (76%)
 Frame = -2 / +1

                                                     
Query: 213 TAAAPAALPMRVMPLGATTYLVASFPPWTVVTSATSLLALTP 88
           TAAA  ALPMR  P GATTYL AS  PWT VT+ATS LALTP
Sbjct: 307 TAAAAPALPMRATPSGATTYLAAS*LPWTTVTTATSSLALTP 432




 Score = 58.8 bits (122), Expect(3) = 8e-051
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = -2 / +1

                                   
Query: 267 GWWQ*WTMYGYDIGWHGTTAAAPA 196
           G WQ*WTMYGY IGWHGT AAAPA
Sbjct: 256 GRWQ*WTMYGYAIGWHGTAAAAPA 327



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 703,016,732
Number of Sequences: 832831
Number of extensions: 8711448
Number of successful extensions: 81942
Number of sequences better than 1.0e-020: 2
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20792394350
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)