TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521569.2.1
(887 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Me... 366 e-101
gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots ... 217 1e-083
gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Me... 271 4e-074
gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1... 217 9e-066
gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stres... 247 2e-064
gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Me... 241 1e-062
gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedl... 238 7e-062
gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2... 237 2e-061
gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 ... 217 2e-055
gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stresse... 201 1e-050
gb|BZ349363.1|BZ349363 hq90g06.g1 WGS-SbicolorF (JM107 adap... 116 1e-049
gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Me... 117 3e-049
gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle... 196 5e-049
gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Me... 192 8e-048
gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated ... 162 8e-039
gb|CW202998.1|CW202998 104_629_11185396_148_37061_008 Sorgh... 117 3e-036
gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Me... 150 3e-035
gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorgh... 133 1e-032
gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Me... 121 1e-026
>gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 567
Score = 366 bits (793), Expect(2) = e-101
Identities = 148/150 (98%), Positives = 149/150 (99%)
Frame = -1 / +1
Query: 641 HTLARWIGRSYRFHTGAELLRTDTQCTDASLKALWQHSDSIMCCSLKAAPVFTFANQAGL 462
HTLARWIGRSYRFHTGAELLRTDTQCTDASLKALWQHSDSIMCCSLKAAPVFTFANQ+GL
Sbjct: 1 HTLARWIGRSYRFHTGAELLRTDTQCTDASLKALWQHSDSIMCCSLKAAPVFTFANQSGL 180
Query: 461 DMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMGRPVSYEQA 282
DMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMGRPVSYEQA
Sbjct: 181 DMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMGRPVSYEQA 360
Query: 281 VAWKVLSDDDTPHCLAFMFVNWSFV*EPGP 192
VAWKVLSDDDTPHCLAFMFVNWSFV*EP P
Sbjct: 361 VAWKVLSDDDTPHCLAFMFVNWSFV*EPAP 450
Score = 338 bits (733), Expect = 6e-092
Identities = 141/146 (96%), Positives = 143/146 (97%)
Frame = +1 / -2
Query: 202 SHTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQ 381
SHTKDQFTNMKARQCGVSSSLRTFHATACS DTGRP+LDTHTPPGRYAKPCCIILGYSVQ
Sbjct: 440 SHTKDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQ 261
Query: 382 SAFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIESECCHSAFKEAS 561
SAFLPSSSRIFSREMSWRAI+VVSSMSRP WLAKVNTGAAFREQHMIESECCHSAFKEAS
Sbjct: 260 SAFLPSSSRIFSREMSWRAINVVSSMSRPDWLAKVNTGAAFREQHMIESECCHSAFKEAS 81
Query: 562 VHWVSVRRSSAPVWNL*LLPIHLASV 639
VHWVSVRRSSAPV NL*LLPIHLASV
Sbjct: 80 VHWVSVRRSSAPV*NL*LLPIHLASV 3
Score = 214 bits (462), Expect(2) = 1e-065
Identities = 87/107 (81%), Positives = 91/107 (85%)
Frame = +2 / -3
Query: 320 HTRHRGGTRSPVA*S*GTRCRAPSCHRRQGSSQGRCPGEQSASSPACPGRLGWQR*TREQ 499
HTR R GTRSP A*S* TRCRAPSCH QGSSQGRCPGE+S SSPAC GR+GW+R*T+EQ
Sbjct: 322 HTRRREGTRSPAA*S*DTRCRAPSCHHHQGSSQGRCPGERSTSSPACRGRIGWRR*TQEQ 143
Query: 500 PSGNST*SSPSVATALSRKHPCIGCPCGGVRLQCGTCSSCRSTLPAC 640
PSGNST*SSPSVAT LSRKH CIGC C G RL C TCSSCRSTL AC
Sbjct: 142 PSGNST*SSPSVATVLSRKHQCIGCLCEGARLLCETCSSCRSTLQAC 2
Score = 207 bits (447), Expect = 2e-052
Identities = 87/103 (84%), Positives = 97/103 (94%)
Frame = +3 / -1
Query: 333 GEVREALLHNLRVLGAERLPAIVVKDLLKGDVLESNQRRLQHVQAGLVGKGEHGSSLQGT 512
G+VREALLHNLR+LGAERLPAI++KDLLKGDVLES+QRRLQHV+AGLVG+GEH SSLQGT
Sbjct: 309 GKVREALLHNLRILGAERLPAIIIKDLLKGDVLESDQRRLQHVEAGLVGEGEHRSSLQGT 130
Query: 513 AHDRVRVLPQRFQGSIRALGVRAEEFGSSVEPVAPADPPCQRV 641
AHDRVRVLPQ FQGSI ALGV A+E GS V+PVAPADPPC+RV
Sbjct: 129 AHDRVRVLPQCFQGSISALGVCAKELGSCVKPVAPADPPCKRV 1
Score = 204 bits (440), Expect(2) = 4e-058
Identities = 87/107 (81%), Positives = 87/107 (81%)
Frame = -3 / +3
Query: 639 HAGKVDRQELQVPHWSRTPPHGHPMHGCFLESAVATLGLDHVLFPEGCSRVHLCQPSRPG 460
HA KVDRQELQV H SR P H HPMH CFLES VATLGLDHVLFPEGCS VHL QP RP
Sbjct: 3 HACKVDRQELQVSHRSRAPSHRHPMH*CFLESTVATLGLDHVLFPEGCSCVHLRQPIRPR 182
Query: 459 HAGDDADCSPGHLP*EDP*RRWQEGALHRVP*DYATGLRVPPRWRVC 319
HAGDD D SPGHLP*EDP* WQEGALHRV *DYA GLRVP R RVC
Sbjct: 183 HAGDDVDRSPGHLP*EDP***WQEGALHRVS*DYAAGLRVPSRRRVC 323
Score = 122 bits (260), Expect(3) = 4e-042
Identities = 51/63 (80%), Positives = 53/63 (84%)
Frame = -2 / +2
Query: 640 TRWQGGSAGATGSTLEPNSSARTPNARMLP*KRCGNTRTRSCAVP*RLLPCSPLPTKPAW 461
TR QGGSAGATG T EP+S A+TPNA MLP*K CGNTRTRSCAVP*RLL CSP PT PA
Sbjct: 2 TRLQGGSAGATGFTQEPSSFAQTPNALMLP*KHCGNTRTRSCAVP*RLLLCSPSPTNPAS 181
Query: 460 TCW 452
TCW
Sbjct: 182 TCW 190
Score = 57.4 bits (119), Expect(2) = 1e-065
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3 / -1
Query: 201 FSHEGPVHEHEGKAVRGVVVAQD 269
FSHEGPVHEHEG+AVRGVVVAQD
Sbjct: 441 FSHEGPVHEHEGEAVRGVVVAQD 373
Score = 55.1 bits (114), Expect(3) = 4e-042
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -2 / +2
Query: 397 MAGRRSAPSTLRLCNRASRTSPVACVCR 314
MAGRRSAPS LRLC+RASRT P ACV R
Sbjct: 245 MAGRRSAPSILRLCSRASRTFPAACVYR 328
Score = 42.3 bits (86), Expect(2) = 4e-058
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -2 / +2
Query: 250 PRTALPSCS*TGPSCEN 200
PRTA PSCS*TGPSCEN
Sbjct: 392 PRTASPSCS*TGPSCEN 442
Score = 34.5 bits (69), Expect(3) = 4e-042
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3 / +3
Query: 246 ALPCLHVRELVLRVRT 199
ALP LHVRELVLRVRT
Sbjct: 396 ALPRLHVRELVLRVRT 443
Score = 23.5 bits (45), Expect(2) = e-101
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -2 / +1
Query: 139 CTPCTVAFACVQATYETHL 83
CT A C YETHL
Sbjct: 505 CTTVAFACLCTGHLYETHL 561
>gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A02_A002 3', mRNA sequence
Length = 833
Score = 217 bits (468), Expect(3) = 1e-083
Identities = 83/116 (71%), Positives = 97/116 (83%)
Frame = -1 / +3
Query: 551 LKALWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTE 372
LK LW H+ +I+CCSLKA PVFTFANQ+GLDMLETTL+ALQDI+LEK+ DD GRK LC E
Sbjct: 339 LKTLWHHASAILCCSLKALPVFTFANQSGLDMLETTLVALQDITLEKVFDDQGRKNLCAE 518
Query: 371 YPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
P IM+QGF +P G+CVS +GRPVSYE+A+AWKVL DD HC+ FMFVNWSFV*
Sbjct: 519 LPGIMEQGFTCIPSGLCVSGLGRPVSYEKALAWKVLDDDSGAHCICFMFVNWSFV* 686
Score = 148 bits (318), Expect(3) = 8e-046
Identities = 65/119 (54%), Positives = 73/119 (61%)
Frame = +1 / -2
Query: 205 HTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQS 384
+T DQ TNMK QC SS TFHA+A SYDTGRP +TH+P G + PC ++ G S
Sbjct: 685 YTNDQLTNMKQMQCAPLSSSSTFHASAFSYDTGRPRPETHSPLGMHVNPCSMMPGSSAHR 506
Query: 385 AFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIESECCHSAFKEAS 561
FLP SS FSR MSW A VVSSMSRP W A VNTG AF+EQ I C F S
Sbjct: 505 FFLPWSSNTFSRVMSWSATRVVSSMSRPDWFANVNTGKAFKEQQSIALA*CQRVFSTPS 329
Score = 79.0 bits (166), Expect(3) = 1e-083
Identities = 28/52 (53%), Positives = 48/52 (92%)
Frame = -1 / +3
Query: 842 STCNTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAMAIAPSRI 687
++ +++V+TI FQF++E+HL++SVAAMARQY+R+++ASVQR+A+A++ SR+
Sbjct: 42 ASAGSKAVMTIVFQFAFESHLQDSVAAMARQYMRSIIASVQRIALALSSSRL 197
Score = 55.1 bits (114), Expect(3) = 1e-083
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = -1 / +3
Query: 671 MKQTPGSPEAHTLARWIGRSYRFHTGAELLRT 576
+ TP SPEA TLARWI +SYRFH GAEL+++
Sbjct: 216 ISHTPASPEATTLARWICQSYRFHFGAELIKS 311
Score = 40.0 bits (81), Expect(3) = 8e-046
Identities = 23/44 (52%), Positives = 25/44 (56%)
Frame = +1 / -2
Query: 691 REGAIAMATLCTDATTVLTYCLAMAATLSRR*FSYENWKAMVST 822
RE A A L TDA + YCLAMAATLS R S N +V T
Sbjct: 193 REEESASAIL*TDAMMLRMYCLAMAATLSCRWLSKAN*NTIVIT 62
Score = 35.4 bits (71), Expect(3) = 8e-046
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = +1 / -2
Query: 586 SSAPVWNL*LLPIHLASVCASGDPGV 663
SSAP NL*L IHLASV ASG GV
Sbjct: 301 SSAPK*NL*LWQIHLASVVASGLAGV 224
>gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 271 bits (587), Expect(3) = 4e-074
Identities = 111/112 (99%), Positives = 111/112 (99%)
Frame = -1 / +2
Query: 527 DSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQG 348
DSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQG
Sbjct: 2 DSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQG 181
Query: 347 FAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EPGP 192
FAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EP P
Sbjct: 182 FAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EPAP 337
Score = 258 bits (558), Expect(2) = 6e-068
Identities = 106/109 (97%), Positives = 108/109 (99%)
Frame = +1 / -1
Query: 202 SHTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQ 381
SHTKDQFTNMKARQCGVSSSLRTFHATACS DTGRP+LDTHTPPGRYAKPCCIILGYSVQ
Sbjct: 327 SHTKDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQ 148
Query: 382 SAFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIES 528
SAFLPSSSRIFSREMSWRAI+VVSSMSRPAWLAKVNTGAAFREQHMIES
Sbjct: 147 SAFLPSSSRIFSREMSWRAINVVSSMSRPAWLAKVNTGAAFREQHMIES 1
Score = 144 bits (310), Expect(3) = 3e-045
Identities = 59/69 (85%), Positives = 62/69 (89%)
Frame = +2 / -2
Query: 320 HTRHRGGTRSPVA*S*GTRCRAPSCHRRQGSSQGRCPGEQSASSPACPGRLGWQR*TREQ 499
HTR RGGTRSP A*S* TRCRAPSCH QGSSQGRCPGE+S SSPAC GRLGW+R*T+EQ
Sbjct: 209 HTRRRGGTRSPAA*S*DTRCRAPSCHHHQGSSQGRCPGERSTSSPACRGRLGWRR*TQEQ 30
Query: 500 PSGNST*SS 526
PSGNST*SS
Sbjct: 29 PSGNST*SS 3
Score = 144 bits (308), Expect(3) = 2e-041
Identities = 60/70 (85%), Positives = 60/70 (85%)
Frame = -3 / +1
Query: 528 GLDHVLFPEGCSRVHLCQPSRPGHAGDDADCSPGHLP*EDP*RRWQEGALHRVP*DYATG 349
GLDHVLFPEGCS VHL QPSRP HAGDD D SPGHLP*EDP* WQEGALHRV *DYA G
Sbjct: 1 GLDHVLFPEGCSCVHLRQPSRPRHAGDDVDRSPGHLP*EDP***WQEGALHRVS*DYAAG 180
Query: 348 LRVPPRWRVC 319
LRVPPR RVC
Sbjct: 181 LRVPPRRRVC 210
Score = 140 bits (301), Expect = 2e-032
Identities = 58/65 (89%), Positives = 64/65 (98%)
Frame = +3 / -3
Query: 333 GEVREALLHNLRVLGAERLPAIVVKDLLKGDVLESNQRRLQHVQAGLVGKGEHGSSLQGT 512
GEVREALLHNLR+LGAERLPAI++KDLLKGDVLES+QRRLQHV+AGLVG+GEH SSLQGT
Sbjct: 196 GEVREALLHNLRILGAERLPAIIIKDLLKGDVLESDQRRLQHVEAGLVGEGEHRSSLQGT 17
Query: 513 AHDRV 527
AHDRV
Sbjct: 16 AHDRV 2
Score = 57.9 bits (120), Expect(3) = 1e-023
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2 / +3
Query: 397 MAGRRSAPSTLRLCNRASRTSPVACVCR 314
MAGRRSAPS LRLC+RASRTSP ACV R
Sbjct: 132 MAGRRSAPSILRLCSRASRTSPAACVYR 215
Score = 57.4 bits (119), Expect(3) = 3e-045
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3 / -3
Query: 201 FSHEGPVHEHEGKAVRGVVVAQD 269
FSHEGPVHEHEG+AVRGVVVAQD
Sbjct: 328 FSHEGPVHEHEGEAVRGVVVAQD 260
Score = 56.5 bits (117), Expect(3) = 1e-023
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -2 / +3
Query: 526 TRSCAVP*RLLPCSPLPTKPAWTCW 452
TRSCAVP*RLL CSP PTKPA TCW
Sbjct: 3 TRSCAVP*RLLLCSPSPTKPASTCW 77
Score = 42.3 bits (86), Expect(3) = 2e-041
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -2 / +3
Query: 250 PRTALPSCS*TGPSCEN 200
PRTA PSCS*TGPSCEN
Sbjct: 279 PRTASPSCS*TGPSCEN 329
Score = 34.5 bits (69), Expect(3) = 1e-023
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3 / +1
Query: 246 ALPCLHVRELVLRVRT 199
ALP LHVRELVLRVRT
Sbjct: 283 ALPRLHVRELVLRVRT 330
Score = 24.9 bits (48), Expect(3) = 4e-074
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2 / +3
Query: 64 PWNKQLCT 41
PWNKQLC+
Sbjct: 462 PWNKQLCS 485
Score = 23.1 bits (44), Expect(2) = 6e-068
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / -1
Query: 43 YKAVCSTG 66
YKAVCSTG
Sbjct: 483 YKAVCSTG 460
Score = 22.6 bits (43), Expect(3) = 2e-041
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1 / +2
Query: 116 CLCPGNL*NTPL 81
CLCPG+L T L
Sbjct: 413 CLCPGHLYETHL 448
Score = 22.6 bits (43), Expect(3) = 4e-074
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -2 / +2
Query: 139 CTPCTVAFACVQATYETHL 83
CT A C YETHL
Sbjct: 392 CTTVAFACLCPGHLYETHL 448
Score = 22.6 bits (43), Expect(3) = 3e-045
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +3 / -3
Query: 42 VQSCLFHG 65
+QSCLFHG
Sbjct: 484 LQSCLFHG 461
>gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 217 bits (468), Expect(2) = 9e-066
Identities = 83/116 (71%), Positives = 97/116 (83%)
Frame = -1 / +3
Query: 551 LKALWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTE 372
LK LW H+ +I+CCSLKA PVFTFANQ+GLDMLETTL+ALQDI+LEK+ DD GRK LC E
Sbjct: 135 LKTLWHHASAILCCSLKALPVFTFANQSGLDMLETTLVALQDITLEKVFDDQGRKNLCAE 314
Query: 371 YPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
P IM+QGF +P G+CVS +GRPVSYE+A+AWKVL DD HC+ FMFVNWSFV*
Sbjct: 315 LPGIMEQGFTCIPSGLCVSGLGRPVSYEKALAWKVLDDDSGAHCICFMFVNWSFV* 482
Score = 148 bits (318), Expect(2) = 2e-039
Identities = 65/119 (54%), Positives = 73/119 (61%)
Frame = +1 / -1
Query: 205 HTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQS 384
+T DQ TNMK QC SS TFHA+A SYDTGRP +TH+P G + PC ++ G S
Sbjct: 481 YTNDQLTNMKQMQCAPLSSSSTFHASAFSYDTGRPRPETHSPLGMHVNPCSMMPGSSAHR 302
Query: 385 AFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIESECCHSAFKEAS 561
FLP SS FSR MSW A VVSSMSRP W A VNTG AF+EQ I C F S
Sbjct: 301 FFLPWSSNTFSRVMSWSATRVVSSMSRPDWFANVNTGKAFKEQQSIALA*CQRVFSTPS 125
Score = 55.1 bits (114), Expect(2) = 9e-066
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = -1 / +3
Query: 671 MKQTPGSPEAHTLARWIGRSYRFHTGAELLRT 576
+ TP SPEA TLARWI +SYRFH GAEL+++
Sbjct: 12 ISHTPASPEATTLARWICQSYRFHFGAELIKS 107
Score = 35.4 bits (71), Expect(2) = 2e-039
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = +1 / -1
Query: 586 SSAPVWNL*LLPIHLASVCASGDPGV 663
SSAP NL*L IHLASV ASG GV
Sbjct: 97 SSAPK*NL*LWQIHLASVVASGLAGV 20
>gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_B02_A002 3', mRNA sequence
Length = 694
Score = 247 bits (534), Expect = 2e-064
Identities = 99/156 (63%), Positives = 117/156 (75%)
Frame = -1 / +3
Query: 671 MKQTPGSPEAHTLARWIGRSYRFHTGAELLRTDTQCTDASLKALWQHSDSIMCCSLKAAP 492
+K PGSPEA LA WIGRSYR HTG E+ +DT+ D+ L W+HSD+I+CCSLK A
Sbjct: 3 LKHPPGSPEALALATWIGRSYRAHTGTEIRWSDTEGADSPLMPFWKHSDAILCCSLKPAF 182
Query: 491 VFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSS 312
FAN AG D+LETTL+ +QD+ LE +LDDDG+KAL + KIMQQG AYLPGGVC SS
Sbjct: 183 TLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLAYLPGGVCRSS 362
Query: 311 MGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
MGR SYEQAVAWKV+ DD P CLA M VNW+F+*
Sbjct: 363 MGRQASYEQAVAWKVVGDDGAPQCLALMLVNWTFI* 470
Score = 186 bits (400), Expect = 5e-046
Identities = 86/153 (56%), Positives = 97/153 (63%)
Frame = +1 / -1
Query: 211 KDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQSAF 390
K Q T+M AR G SS TFHATACSYD RPMLD HTPPGRYA+PCC+IL AF
Sbjct: 463 KVQLTSMSARH*GAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILESCANRAF 284
Query: 391 LPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIESECCHSAFKEASVHW 570
PSSSR S SW VVS MS+PA LA ++ A FREQ I S C + + S
Sbjct: 283 WPSSSRTASSGRSWMFTRVVSRMSKPALLANLSVKAGFREQQSIASLCFQNGIRGESAPS 104
Query: 571 VSVRRSSAPVWNL*LLPIHLASVCASGDPGVCF 669
VS +R S PV L*LLPIH+A ASG+PG CF
Sbjct: 103 VSDQRISVPVCAL*LLPIHVARASASGEPGGCF 5
Score = 109 bits (232), Expect(2) = 7e-028
Identities = 56/108 (51%), Positives = 70/108 (64%)
Frame = +3 / -3
Query: 333 GEVREALLHNLRVLGAERLPAIVVKDLLKGDVLESNQRRLQHVQAGLVGKGEHGSSLQGT 512
GEVR+ALLH+L L + L A+VV++ L+ VL+ +Q RLQ V+AG VG+ E S LQ
Sbjct: 341 GEVRQALLHDLGELRKQGLLAVVVENSLQRQVLDVHQGRLQDVEAGTVGELERESRLQRA 162
Query: 513 AHDRVRVLPQRFQGSIRALGVRAEEFGSSVEPVAPADPPCQRVCLRRS 656
A V VLP+ QG IRA VR + SSV PVAPADP CLRR+
Sbjct: 161 AEYCVAVLPEWHQGRIRAFSVRPADLRSSVRPVAPADPRS*SKCLRRA 18
Score = 36.3 bits (73), Expect(2) = 7e-028
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3 / -3
Query: 159 ANARQLGSTTRGTGFSHEGPVHEHEGKAVRGVVV 260
+ A + G + G S EGPV EHE +A+RG VV
Sbjct: 515 SGAPERGCEPQKRGASDEGPVDEHERQALRGTVV 414
>gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 474
Score = 241 bits (521), Expect = 1e-062
Identities = 101/155 (65%), Positives = 119/155 (76%)
Frame = -1 / +1
Query: 743 RTVVASVQRVAMAIAPSRIGGQLEMKQTPGSPEAHTLARWIGRSYRFHTGAELLRTDTQC 564
R V+ASVQRVAMAIAPSR+G +E+K PGSPEA LA WIGRSYR HTG E+ +DT+
Sbjct: 10 RGVMASVQRVAMAIAPSRLGPHIELKHPPGSPEALALATWIGRSYRAHTGTEIRWSDTEG 189
Query: 563 TDASLKALWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKA 384
D+ L W+HSD+I+CCSLK A FAN AG D+LETTL+ +QD+ LE +LDDDG+KA
Sbjct: 190 ADSPLMPFWKHSDAILCCSLKPAFTLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKA 369
Query: 383 LCTEYPKIMQQGFAYLPGGVCVSSMGRPVSYEQAV 279
L + KIMQQG AYLPGGVC SSMGR SYEQAV
Sbjct: 370 LFAQLSKIMQQGLAYLPGGVCRSSMGRQASYEQAV 474
Score = 201 bits (434), Expect = 1e-050
Identities = 92/155 (59%), Positives = 102/155 (65%)
Frame = +1 / -2
Query: 280 TACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQSAFLPSSSRIFSREMSWRAISVVSSM 459
TACSYD RPMLD HTPPGRYA+PCC+IL AF PSSSR S SW VVS M
Sbjct: 473 TACSYDACRPMLDLHTPPGRYARPCCMILESCANRAFWPSSSRTASSGRSWMFTRVVSRM 294
Query: 460 SRPAWLAKVNTGAAFREQHMIESECCHSAFKEASVHWVSVRRSSAPVWNL*LLPIHLASV 639
S+PA LA ++ A FREQ I S C + + S VS +R S PV L*LLPIH+A
Sbjct: 293 SKPALLANLSVKAGFREQQSIASLCFQNGIRGESAPSVSDQRISVPVCAL*LLPIHVARA 114
Query: 640 CASGDPGVCFISSCPPMREGAIAMATLCTDATTVL 744
ASG+PG CF S C P REGAIAMATLCTDA T L
Sbjct: 113 SASGEPGGCFSSICGPRREGAIAMATLCTDAITPL 9
Score = 160 bits (344), Expect = 3e-038
Identities = 75/137 (54%), Positives = 91/137 (66%)
Frame = +3 / -1
Query: 333 GEVREALLHNLRVLGAERLPAIVVKDLLKGDVLESNQRRLQHVQAGLVGKGEHGSSLQGT 512
GEVR+ALLH+L L + L A+VV+D L+ VL+ +Q RLQ V+AG VG+ E S LQ
Sbjct: 420 GEVRQALLHDLGELRKQGLLAVVVEDGLQRQVLDVHQGRLQDVEAGAVGELERESRLQRA 241
Query: 513 AHDRVRVLPQRFQGSIRALGVRAEEFGSSVEPVAPADPPCQRVCLRRSWSLLHFKLSTNA 692
A V VLP+ QG IRA GVR + SSV PVAPADP CLRR+W +L F + A
Sbjct: 240 AEYCVAVLPEWHQGRIRAFGVRPADLRSSVRPVAPADPRS*SKCLRRAWWMLQFDMRAKA 61
Query: 693 RRSYCHGYPLHRCHHGP 743
RRS CHG+PLHR HH P
Sbjct: 60 RRSNCHGHPLHRRHHTP 10
Score = 104 bits (221), Expect = 3e-021
Identities = 57/137 (41%), Positives = 66/137 (48%)
Frame = +2 / -3
Query: 323 TRHRGGTRSPVA*S*GTRCRAPSCHRRQGSSQGRCPGEQSASSPACPGRLGWQR*TREQP 502
TR RGGT P A*S PS RR+G PG SSP C R W+ * +
Sbjct: 430 TRRRGGTPGPAA*SWRAAQTGPSGRRRRGRPPAAGPGCSPGSSPGCRSRRCWRT*A*KPA 251
Query: 503 SGNST*SSPSVATALSRKHPCIGCPCGGVRLQCGTCSSCRSTLPACVPQEILEFASFQAV 682
S +S + S ++P + CP G QC CSSCRST VPQE L AS +
Sbjct: 250 SESSRVLRRCASRMASGENPRLRCPTSGSPFQCAPCSSCRST*LEQVPQESLVDASVRYA 71
Query: 683 HQCAKELLPWLPSAPMP 733
Q KE LPW PSA P
Sbjct: 70 GQGEKEQLPWPPSAQTP 20
>gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 3', mRNA sequence
Length = 654
Score = 238 bits (515), Expect = 7e-062
Identities = 92/148 (62%), Positives = 117/148 (79%)
Frame = -1 / +1
Query: 647 EAHTLARWIGRSYRFHTGAELLRTDTQCTDASLKALWQHSDSIMCCSLKAAPVFTFANQA 468
EA TLARW+ +SY +H G ELL + +A LK LW H D+++CCS K P+FTFAN+A
Sbjct: 1 EAATLARWVCQSYHYHLGLELLNQSDEAGEALLKMLWHHPDAVLCCSFKEKPMFTFANKA 180
Query: 467 GLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMGRPVSYE 288
GLDMLET+LIALQD++L+KI D+ GRKA+ ++ K+M+QG+AYLP GVC+S MGR VS++
Sbjct: 181 GLDMLETSLIALQDLTLDKIFDESGRKAIFSDISKLMEQGYAYLPSGVCMSGMGRHVSFD 360
Query: 287 QAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
QAVAWKVL +D HCLAF FVNWSFV*
Sbjct: 361 QAVAWKVLGEDSNVHCLAFCFVNWSFV* 444
Score = 133 bits (286), Expect = 3e-030
Identities = 64/119 (53%), Positives = 71/119 (59%)
Frame = +1 / -2
Query: 205 HTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQS 384
HTKDQ T ARQC + SS TFHATA S +T RP+ D HTP GRYA PC I S
Sbjct: 443 HTKDQLTKQNARQCTLLSSPSTFHATAWSKETWRPIPDMHTPDGRYA*PCSISFEISENI 264
Query: 385 AFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIESECCHSAFKEAS 561
AFLP SS+I S S AI VS+MS PA A VN G + +EQH S C S F AS
Sbjct: 263 AFLPDSSKILSSVRSCSAIRDVSNMSSPALFANVNIGFSLKEQHRTASG*CQSIFNNAS 87
>gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 369
Score = 237 bits (512), Expect = 2e-061
Identities = 97/98 (98%), Positives = 97/98 (98%)
Frame = -1 / +2
Query: 485 TFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMG 306
TFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMG
Sbjct: 2 TFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMG 181
Query: 305 RPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EPGP 192
RPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EP P
Sbjct: 182 RPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EPAP 295
Score = 225 bits (486), Expect = 7e-058
Identities = 92/95 (96%), Positives = 94/95 (98%)
Frame = +1 / -1
Query: 202 SHTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQ 381
SHTKDQFTNMKARQCGVSSSLRTFHATACS DTGRP+LDTHTPPGRYAKPCCIILGYSVQ
Sbjct: 285 SHTKDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQ 106
Query: 382 SAFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKV 486
SAFLPSSSRIFSREMSWRAI+VVSSMSRPAWLAKV
Sbjct: 105 SAFLPSSSRIFSREMSWRAINVVSSMSRPAWLAKV 1
Score = 118 bits (252), Expect(2) = 7e-037
Identities = 46/55 (83%), Positives = 48/55 (87%)
Frame = +2 / -2
Query: 320 HTRHRGGTRSPVA*S*GTRCRAPSCHRRQGSSQGRCPGEQSASSPACPGRLGWQR 484
HTR RGGTRSP A*S* TRCRAPSCH QGSSQGRCPGE+S SSPAC GRLGW+R
Sbjct: 167 HTRRRGGTRSPAA*S*DTRCRAPSCHHHQGSSQGRCPGERSTSSPACRGRLGWRR 3
Score = 111 bits (238), Expect(2) = 2e-030
Identities = 47/56 (83%), Positives = 47/56 (83%)
Frame = -3 / +1
Query: 486 HLCQPSRPGHAGDDADCSPGHLP*EDP*RRWQEGALHRVP*DYATGLRVPPRWRVC 319
HL QPSRP HAGDD D SPGHLP*EDP* WQEGALHRV *DYA GLRVPPR RVC
Sbjct: 1 HLRQPSRPRHAGDDVDRSPGHLP*EDP***WQEGALHRVS*DYAAGLRVPPRRRVC 168
Score = 110 bits (235), Expect = 3e-023
Identities = 45/51 (88%), Positives = 51/51 (100%)
Frame = +3 / -3
Query: 333 GEVREALLHNLRVLGAERLPAIVVKDLLKGDVLESNQRRLQHVQAGLVGKG 485
GEVREALLHNLR+LGAERLPAI++KDLLKGDVLES+QRRLQHV+AGLVG+G
Sbjct: 154 GEVREALLHNLRILGAERLPAIIIKDLLKGDVLESDQRRLQHVEAGLVGEG 2
Score = 57.4 bits (119), Expect(2) = 7e-037
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3 / -3
Query: 201 FSHEGPVHEHEGKAVRGVVVAQD 269
FSHEGPVHEHEG+AVRGVVVAQD
Sbjct: 286 FSHEGPVHEHEGEAVRGVVVAQD 218
Score = 42.3 bits (86), Expect(2) = 2e-030
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -2 / +3
Query: 250 PRTALPSCS*TGPSCEN 200
PRTA PSCS*TGPSCEN
Sbjct: 237 PRTASPSCS*TGPSCEN 287
>gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 666
Score = 217 bits (468), Expect = 2e-055
Identities = 83/116 (71%), Positives = 97/116 (83%)
Frame = -1 / +3
Query: 551 LKALWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTE 372
LK LW H+ +I+CCSLKA PVFTFANQ+GLDMLETTL+ALQDI+LEK+ DD GRK LC E
Sbjct: 36 LKTLWHHASAILCCSLKALPVFTFANQSGLDMLETTLVALQDITLEKVFDDQGRKNLCAE 215
Query: 371 YPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
P IM+QGF +P G+CVS +GRPVSYE+A+AWKVL DD HC+ FMFVNWSFV*
Sbjct: 216 LPGIMEQGFTCIPSGLCVSGLGRPVSYEKALAWKVLDDDSGAHCICFMFVNWSFV* 383
Score = 148 bits (318), Expect = 1e-034
Identities = 65/119 (54%), Positives = 73/119 (61%)
Frame = +1 / -3
Query: 205 HTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQS 384
+T DQ TNMK QC SS TFHA+A SYDTGRP +TH+P G + PC ++ G S
Sbjct: 382 YTNDQLTNMKQMQCAPLSSSSTFHASAFSYDTGRPRPETHSPLGMHVNPCSMMPGSSAHR 203
Query: 385 AFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIESECCHSAFKEAS 561
FLP SS FSR MSW A VVSSMSRP W A VNTG AF+EQ I C F S
Sbjct: 202 FFLPWSSNTFSRVMSWSATRVVSSMSRPDWFANVNTGKAFKEQQSIALA*CQRVFSTPS 26
>gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_77_A06_A011 5', mRNA sequence
Length = 503
Score = 201 bits (433), Expect = 1e-050
Identities = 76/115 (66%), Positives = 96/115 (83%)
Frame = -1 / +2
Query: 548 KALWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEY 369
K LW H D+++CCS K P+FTFAN+AGLDMLET+LIALQD++L+KI D+ GRKA+ ++
Sbjct: 2 KMLWHHPDAVLCCSFKEKPMFTFANKAGLDMLETSLIALQDLTLDKIFDESGRKAIFSDI 181
Query: 368 PKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
K+M+QG+AYLP GVC+S MGR VS++QAVAWKVL +D HCLAF FVNWSFV*
Sbjct: 182 SKLMEQGYAYLPSGVCMSGMGRHVSFDQAVAWKVLGEDSNVHCLAFCFVNWSFV* 346
Score = 130 bits (278), Expect = 3e-029
Identities = 62/115 (53%), Positives = 69/115 (60%)
Frame = +1 / -3
Query: 205 HTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQS 384
HTKDQ T ARQC + SS TFHATA S +T RP+ D HTP GRYA PC I S
Sbjct: 345 HTKDQLTKQNARQCTLLSSPSTFHATAWSKETWRPIPDMHTPDGRYA*PCSISFEISENI 166
Query: 385 AFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIESECCHSAF 549
AFLP SS+I S S AI VS+MS PA A VN G + +EQH S C S F
Sbjct: 165 AFLPDSSKILSSVRSCSAIRDVSNMSSPALFANVNIGFSLKEQHRTASG*CQSIF 1
>gb|BZ349363.1|BZ349363 hq90g06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hq90g06 5', DNA sequence
Length = 488
Score = 116 bits (248), Expect(3) = 1e-049
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = +1 / -2
Query: 337 RYAKPCCIILGYSVQSAFLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAA 501
R CCIILGYSVQSAFLPSSSRIFSREMSWRA++VVSSMSRPAWLAKVNTGAA
Sbjct: 373 RLLHTCCIILGYSVQSAFLPSSSRIFSREMSWRAMNVVSSMSRPAWLAKVNTGAA 209
Score = 114 bits (243), Expect(3) = 3e-048
Identities = 48/52 (92%), Positives = 49/52 (94%)
Frame = -1 / +3
Query: 506 LKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQ 351
+ AAPVFTFANQAGLDMLETT IAL DISLEKILDDDGRKALCTEYPKIMQQ
Sbjct: 204 IHAAPVFTFANQAGLDMLETTFIALHDISLEKILDDDGRKALCTEYPKIMQQ 359
Score = 105 bits (224), Expect(3) = 7e-037
Identities = 44/56 (78%), Positives = 52/56 (92%)
Frame = +3 / -1
Query: 336 EVREALLHNLRVLGAERLPAIVVKDLLKGDVLESNQRRLQHVQAGLVGKGEHGSSL 503
EV LLHNLRVLGAERLPAI++KDLLKGDV+ES++RRLQHV+AGLVG+GEH SS+
Sbjct: 374 EVIAYLLHNLRVLGAERLPAIIIKDLLKGDVVESDERRLQHVEAGLVGEGEHRSSV 207
Score = 99.1 bits (210), Expect(2) = 1e-032
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +2 / -3
Query: 350 PVA*S*GTRCRAPSCHRRQGSSQGRCPGEQSASSPACPGRLGWQR*TREQ 499
P A*S*GTRCRAPSCH QGSSQGRC GE+ SSPAC GRLGW+R*T+EQ
Sbjct: 360 PAA*S*GTRCRAPSCHHHQGSSQGRCRGER*TSSPACRGRLGWRR*TQEQ 211
Score = 96.4 bits (204), Expect(3) = 3e-035
Identities = 41/54 (75%), Positives = 43/54 (79%)
Frame = -3 / +2
Query: 498 CSRVHLCQPSRPGHAGDDADCSPGHLP*EDP*RRWQEGALHRVP*DYATGLRVP 337
CS VHL QPSRP HAGDD SP HLP*EDP* WQEGALHRVP*DYA G++ P
Sbjct: 212 CSCVHLRQPSRPRHAGDDVHRSPRHLP*EDP***WQEGALHRVP*DYAAGMQ*P 373
Score = 82.6 bits (174), Expect(3) = 1e-049
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1 / -2
Query: 502 FREQHMIESECCHSAFKEASVHWVSVRRSSAP 597
FREQHMIESECCHSAFKEASVHWVSVRRSSAP
Sbjct: 121 FREQHMIESECCHSAFKEASVHWVSVRRSSAP 26
Score = 82.6 bits (174), Expect(3) = 3e-048
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1 / +3
Query: 605 FHTGAELLRTDTQCTDASLKALWQHSDSIMCCSLK 501
F GAELLRTDTQCTDASLKALWQHSDSIMCCSLK
Sbjct: 18 FTHGAELLRTDTQCTDASLKALWQHSDSIMCCSLK 122
Score = 68.4 bits (143), Expect(3) = 3e-026
Identities = 30/55 (54%), Positives = 32/55 (58%)
Frame = -2 / +1
Query: 499 LLPCSPLPTKPAWTCWXXXXXXXXXXXXXXXXXTMAGRRSAPSTLRLCNRASRTS 335
LL CSP PTKPA TCW MAGRRSAPSTLRLC+R + TS
Sbjct: 211 LLLCSPSPTKPASTCWRRRSSLSTTSPLRRSLMMMAGRRSAPSTLRLCSRYAITS 375
Score = 65.2 bits (136), Expect(3) = 3e-035
Identities = 26/32 (81%), Positives = 26/32 (81%)
Frame = -3 / +2
Query: 594 SRTPPHGHPMHGCFLESAVATLGLDHVLFPEG 499
SR P H HPMH CFLES VATL LDHVLFPEG
Sbjct: 29 SRAPSHRHPMH*CFLESTVATL*LDHVLFPEG 124
Score = 63.4 bits (132), Expect(3) = 3e-026
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = -2 / +1
Query: 604 STLEPNSSARTPNARMLP*KRCGNTRTRSCAVP*R 500
S EP+S A+TPNA MLP*K CGNT TRSCAVP*R
Sbjct: 19 SLTEPSSFAQTPNALMLP*KHCGNTLTRSCAVP*R 123
Score = 62.5 bits (130), Expect(3) = 7e-037
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +2 / -3
Query: 500 PSGNST*SSPSVATALSRKHPCIGCPCGGVRLQ 598
PSGNST*SS SVAT LSRKH CIGC C G RL+
Sbjct: 123 PSGNST*SSQSVATVLSRKHQCIGCLCEGARLR 25
Score = 62.5 bits (130), Expect(2) = 1e-032
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = +3 / -1
Query: 474 VGKGEHGSSLQGTAHDRVRVLPQRFQGSIRALGVRAEEFGSSVE 605
+G + LQGTAHDRVRVLPQ FQGSI ALGV A+E GS E
Sbjct: 149 IGDTSTTNYLQGTAHDRVRVLPQCFQGSISALGVCAKELGSVSE 18
Score = 38.2 bits (77), Expect(3) = 1e-049
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1 / -1
Query: 310 MLDTHTPPGRYAKP 351
+LDTHTPPGRYAKP
Sbjct: 488 ILDTHTPPGRYAKP 447
Score = 35.4 bits (71), Expect(3) = 3e-048
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / +1
Query: 350 GFAYLPGGVCVSS 312
GFAYLPGGVCVSS
Sbjct: 448 GFAYLPGGVCVSS 486
Score = 26.7 bits (52), Expect(3) = 3e-035
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3 / +3
Query: 351 GLRVPPRWRVC 319
GLR+PPR RVC
Sbjct: 447 GLRIPPRRRVC 479
Score = 25.8 bits (50), Expect(3) = 3e-026
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / +2
Query: 355 NRASRTSPVACVCR 314
+RAS TSP ACV R
Sbjct: 443 SRASHTSPAACVYR 484
Score = 25.8 bits (50), Expect(3) = 7e-037
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2 / -2
Query: 320 HTRHRGGTRSP 352
HTR RGG RSP
Sbjct: 478 HTRRRGGMRSP 446
>gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 367
Score = 117 bits (251), Expect(2) = 3e-049
Identities = 45/46 (97%), Positives = 45/46 (97%)
Frame = -1 / +3
Query: 353 QGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNW 216
QGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFV W
Sbjct: 228 QGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVKW 365
Score = 107 bits (229), Expect(2) = 3e-046
Identities = 42/46 (91%), Positives = 43/46 (93%)
Frame = +1 / -1
Query: 214 DQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKP 351
D FTNM ARQCGVSSSLRTFHATACS DTGRP+LDTHTPPGRYAKP
Sbjct: 367 DHFTNMNARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKP 230
Score = 99.6 bits (211), Expect(2) = 3e-046
Identities = 42/47 (89%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 340 YAKPCCIILGYSVQSAFLPSSSRIFSREMSWRAISVVSSMSRPAWLA 480
Y CCIIL YSVQSAFLPSSSRIFSREMSWRAI+VVSSMSRPAWLA
Sbjct: 143 YCITCCIILRYSVQSAFLPSSSRIFSREMSWRAINVVSSMSRPAWLA 3
Score = 99.6 bits (211), Expect(2) = 3e-049
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = -1 / +1
Query: 482 FANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQ 351
FANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEY KIMQQ
Sbjct: 1 FANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYLKIMQQ 132
Score = 93.6 bits (198), Expect(3) = 7e-027
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2 / -1
Query: 350 PVA*S*GTRCRAPSCHRRQGSSQGRCPGEQSASSPACPGRLGWQ 481
P A*S* TRCRAPSCH QGSSQGRCPGE+S SSPAC GRLGW+
Sbjct: 133 PAA*S*DTRCRAPSCHHHQGSSQGRCPGERSTSSPACRGRLGWR 2
Score = 37.7 bits (76), Expect(3) = 7e-027
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3 / -3
Query: 216 PVHEHEGKAVRGVVVAQD 269
P HEHE +AVRGVVVAQD
Sbjct: 365 PFHEHECEAVRGVVVAQD 312
Score = 28.6 bits (56), Expect(3) = 7e-027
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 320 HTRHRGGTRSP 352
HTR RGGTRSP
Sbjct: 261 HTRRRGGTRSP 229
>gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 196 bits (422), Expect = 5e-049
Identities = 77/110 (70%), Positives = 90/110 (81%)
Frame = -1 / +1
Query: 533 HSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQ 354
H D+++CCS K PVFTF NQ G+DMLETTLIALQD++L+KI D GRKAL E PK+M+
Sbjct: 4 HQDAVLCCSFKEKPVFTFGNQMGIDMLETTLIALQDLTLDKIFDLPGRKALHAEVPKLME 183
Query: 353 QGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
QG+AYLP GVC+S MGR VSYE+AVAWKVL +D HCLAF FVNWSFV*
Sbjct: 184 QGYAYLPAGVCLSGMGRHVSYEEAVAWKVLGEDGNVHCLAFCFVNWSFV* 333
Score = 143 bits (307), Expect = 3e-033
Identities = 64/107 (59%), Positives = 73/107 (68%)
Frame = +1 / -3
Query: 208 TKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQSA 387
TKDQ T KARQC + SS RTFHATA S +T RP+ D HTP G+YA PC I G S +A
Sbjct: 329 TKDQLTKQKARQCTLPSSPRTFHATASS*ETWRPIPDKHTPAGKYAYPCSISFGTSACNA 150
Query: 388 FLPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIES 528
FLP S+I SR S RAI VVS+MS P WL KVNTG + +EQH S
Sbjct: 149 FLPGRSKILSRVRSCRAIRVVSNMSIPIWLPKVNTGFSLKEQHKTAS 9
>gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 490
Score = 192 bits (413), Expect = 8e-048
Identities = 76/116 (65%), Positives = 89/116 (76%)
Frame = -1 / +2
Query: 551 LKALWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTE 372
L W+HSD+I+CCSLK A FAN AG D+LETTL+ +QD+ LE +LDDDG+KAL +
Sbjct: 26 LMPFWKHSDAILCCSLKPAFTLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQ 205
Query: 371 YPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
KIMQQG AYLPGGVC SSMGR SYEQAVAWKV+ DD P CLA M VNW+F+*
Sbjct: 206 LSKIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLVNWTFI* 373
Score = 149 bits (321), Expect = 4e-035
Identities = 65/114 (57%), Positives = 73/114 (64%)
Frame = +1 / -2
Query: 211 KDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQSAF 390
K Q T+M AR CG SS TFHATACSYD RPMLD HTPPGRYA+PCC+IL AF
Sbjct: 366 KVQLTSMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILESCANRAF 187
Query: 391 LPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAFREQHMIESECCHSAFK 552
PSSSR S SW VVS MS+PA LA ++ A FREQ I S C + +
Sbjct: 186 WPSSSRTASSGRSWMFTRVVSRMSKPALLANLSVKAGFREQQSIASLCFQNGIR 25
>gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_A10_A002 3', mRNA sequence
Length = 560
Score = 162 bits (348), Expect = 8e-039
Identities = 66/100 (66%), Positives = 76/100 (76%)
Frame = -1 / +2
Query: 503 KAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGV 324
K A FAN AG D+LETTL+ +QD+ LE +LDDDG+KAL + KIMQQG AYLPGGV
Sbjct: 2 KPAFTLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLAYLPGGV 181
Query: 323 CVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 204
C SSMGR SYEQAVAWKV+ DD P CLA M VNW+F+*
Sbjct: 182 CRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLVNWTFI* 301
Score = 132 bits (282), Expect = 1e-029
Identities = 58/98 (59%), Positives = 64/98 (65%)
Frame = +1 / -3
Query: 211 KDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQSAF 390
K Q T+M AR G SS TFHATACSYD RPMLD HTPPGRYA+PCC+IL AF
Sbjct: 294 KVQLTSMSARH*GAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILESCANRAF 115
Query: 391 LPSSSRIFSREMSWRAISVVSSMSRPAWLAKVNTGAAF 504
PSSSR S SW VVS MS+PA LA ++ A F
Sbjct: 114 WPSSSRTASSGRSWMFTRVVSRMSKPALLANLSVNAGF 1
>gb|CW202998.1|CW202998 104_629_11185396_148_37061_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185396, DNA
sequence
Length = 692
Score = 117 bits (251), Expect(2) = 3e-036
Identities = 52/94 (55%), Positives = 65/94 (69%)
Frame = -1 / -3
Query: 887 EVGSGXTTRASSDXXSTCNTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAM 708
+VGS + CN RSVLTIAFQF YE HL++SVA MARQYVR VV++VQRV+M
Sbjct: 642 DVGSAAPQASGDASPDDCNLRSVLTIAFQFPYEMHLQDSVATMARQYVRGVVSAVQRVSM 463
Query: 707 AIAPSRIGGQLEMKQTPGSPEAHTLARWIGRSYR 606
AI+PS+ G + G PEA TLARW+ +SY+
Sbjct: 462 AISPSQSGLNAGQRMLSGFPEAATLARWVCQSYQ 361
Score = 55.6 bits (115), Expect(2) = 3e-036
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -1 / -3
Query: 620 GRSYRFHTGAELLRTDTQCTDASLKALWQHSDSIMCCSLKAAPVF 486
G Y +H G ELL + +A LK LW H D+++CCS K + F
Sbjct: 264 GHQYSYHLGLELLNQSDEAGEALLKMLWHHPDAVLCCSFKVSEEF 130
>gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 513
Score = 150 bits (322), Expect = 3e-035
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = -1 / +2
Query: 452 ETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAW 273
ETTLIALQD++L+KI D+ GRKAL E PK+M+QG+AYLP GVC+S MGR VSYE+AVAW
Sbjct: 2 ETTLIALQDLTLDKIFDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEEAVAW 181
Query: 272 KVLSDDDTPHCLAFMFVNWSFV* 204
KVL +D HCLAF FVNWSFV*
Sbjct: 182 KVLGEDGNVHCLAFCFVNWSFV* 250
Score = 111 bits (236), Expect = 2e-023
Identities = 51/82 (62%), Positives = 57/82 (69%)
Frame = +1 / -1
Query: 208 TKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQSA 387
TKDQ T KARQC + SS RTFHATA S +T RP+ D HTP G+YA PC I G S +A
Sbjct: 246 TKDQLTKQKARQCTLPSSPRTFHATASS*ETWRPIPDKHTPAGKYA*PCSINFGTSACNA 67
Query: 388 FLPSSSRIFSREMSWRAISVVS 453
FLP SS+I SR S RAI VVS
Sbjct: 66 FLPGSSKILSRVRSCRAIRVVS 1
>gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899358, DNA
sequence
Length = 355
Score = 133 bits (286), Expect(3) = 1e-032
Identities = 52/53 (98%), Positives = 52/53 (98%)
Frame = -1 / +2
Query: 350 GFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EPGP 192
GFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EP P
Sbjct: 71 GFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV*EPAP 229
Score = 122 bits (261), Expect(2) = 4e-028
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = +1 / -2
Query: 202 SHTKDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKP 351
SHTKDQFTNMKARQCGVSSSLRTFHATACS DTGRP+LDTHTPPGRYAKP
Sbjct: 219 SHTKDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKP 70
Score = 24.0 bits (46), Expect(2) = 4e-028
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3 / -3
Query: 111 QAKATVHGVQSSNNRAANARQLGSTTR 191
QAKATV AANAR+L +T+
Sbjct: 311 QAKATVVHGHRVQITAANARRLTGSTK 231
Score = 23.1 bits (44), Expect(3) = 1e-032
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1 / +3
Query: 188 SSRAKLPSVCGSVV*TLYPMYRRFCL 111
S ++ PS+C + ++ Y RFCL
Sbjct: 234 SRASQSPSICSCYLNSVPMYYCRFCL 311
Score = 22.6 bits (43), Expect(3) = 1e-032
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1 / +1
Query: 116 CLCPGNL*NTPL 81
CLCPG+L T L
Sbjct: 310 CLCPGHLYETHL 345
>gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 423
Score = 121 bits (259), Expect = 1e-026
Identities = 48/67 (71%), Positives = 53/67 (79%)
Frame = -1 / +2
Query: 404 DDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMF 225
DDDG+KAL + KIMQQG AYLPGGVC SSMGR SYEQAVAWKV+ DD P CLA M
Sbjct: 2 DDDGQKALFAQLSKIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 181
Query: 224 VNWSFV* 204
VNW+F+*
Sbjct: 182 VNWTFI* 202
Score = 109 bits (232), Expect = 8e-023
Identities = 44/65 (67%), Positives = 47/65 (72%)
Frame = +1 / -1
Query: 211 KDQFTNMKARQCGVSSSLRTFHATACSYDTGRPMLDTHTPPGRYAKPCCIILGYSVQSAF 390
K Q T+M AR CG SS TFHATACSYD RPMLD HTPPGRYA+PCC+IL AF
Sbjct: 195 KVQLTSMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILESCANRAF 16
Query: 391 LPSSS 405
PSSS
Sbjct: 15 WPSSS 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,237,207,682
Number of Sequences: 832831
Number of extensions: 21924461
Number of successful extensions: 195931
Number of sequences better than 1.0e-020: 19
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 28634097362
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)