TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2486118.2.1
(635 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW285511.1|AW285511 LG1_241_E06.g1_A002 Light Grown 1 (L... 286 4e-078
gb|BE363123.1|BE363123 DG1_9_B09.g1_A002 Dark Grown 1 (DG1)... 286 4e-078
gb|BG103495.1|BG103495 RHIZ2_37_C06.g1_A003 Rhizome2 (RHIZ2... 227 1e-058
gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum m... 203 3e-051
gb|CL190999.1|CL190999 104_409_10906474_116_32497_037 Sorgh... 200 1e-050
gb|CW411521.1|CW411521 fsbb001f106l17k0 Sorghum methylation... 200 1e-050
gb|CF071040.1|CF071040 FE1_15_B03.b1_A002 Iron-deficient se... 178 6e-049
gb|CW464011.1|CW464011 fsbb001f213a09f0 Sorghum methylation... 194 8e-049
gb|CW026623.1|CW026623 104_252_10498051_116_30520 Sorghum m... 169 4e-041
gb|CD211868.1|CD211868 HS1_67_A05.b1_A012 Heat-shocked seed... 151 1e-035
gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2... 150 1e-035
gb|BG557221.1|BG557221 EM1_44_B10.g1_A002 Embryo 1 (EM1) So... 150 1e-035
gb|CF071834.1|CF071834 FE1_19_D03.b1_A002 Iron-deficient se... 150 1e-035
gb|CF771740.1|CF771740 DSBF1_23_E06.g1_A010 Drought-stresse... 150 1e-035
gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkal... 150 1e-035
gb|CN128754.1|CN128754 RHOH1_31_H09.b1_A002 Acid- and alkal... 150 1e-035
gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorgh... 150 2e-035
gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum m... 150 2e-035
gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorgh... 150 2e-035
gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorgh... 150 2e-035
gb|CW413531.1|CW413531 fsbb001f112l18f0 Sorghum methylation... 150 2e-035
gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorgh... 149 4e-035
gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorgh... 149 5e-035
gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation... 149 5e-035
gb|BE918570.1|BE918570 OV1_8_E09.b1_A002 Ovary 1 (OV1) Sorg... 149 5e-035
gb|BF317903.1|BF317903 OV1_9_B10.b1_A002 Ovary 1 (OV1) Sorg... 149 5e-035
gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkal... 149 5e-035
gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorgh... 148 7e-035
gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (L... 148 7e-035
gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced ... 148 7e-035
gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-tre... 148 7e-035
gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient se... 147 2e-034
gb|CX607839.1|CX607839 ANR1_31_C06.b1_A002 Anaerobic roots ... 146 2e-034
gb|BI245815.1|BI245815 IP1_64_G05.g1_A002 Immature pannicle... 145 5e-034
gb|CD233339.1|CD233339 SS1_13_G11.b1_A012 Salt-stressed see... 145 5e-034
gb|CW235147.1|CW235147 104_690_11214827_148_37411_042 Sorgh... 145 6e-034
gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Me... 144 1e-033
gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Me... 144 1e-033
gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2... 144 1e-033
gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle... 144 1e-033
gb|CW164547.1|CW164547 104_572_11152044_148_36463_038 Sorgh... 141 1e-032
gb|BG947765.1|BG947765 IP1_8_G12.g1_A002 Immature pannicle ... 141 1e-032
gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle ... 141 1e-032
gb|BI074550.1|BI074550 IP1_16_A11.g1_A002 Immature pannicle... 141 1e-032
gb|AW283377.1|AW283377 LG1_223_D12.g1_A002 Light Grown 1 (L... 140 2e-032
gb|CW224629.1|CW224629 104_662_11203928_148_37201_032 Sorgh... 139 3e-032
gb|BZ332309.1|BZ332309 hx26h05.b1 WGS-SbicolorF (JM107 adap... 81 4e-032
gb|CF072959.1|CF072959 FE1_27_D01.b1_A002 Iron-deficient se... 138 8e-032
gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sor... 134 1e-030
gb|CF429881.1|CF429881 PH1_25_C04.b1_A002 Phosphorous-defic... 118 2e-030
gb|CL157592.1|CL157592 104_345_10783695_116_31478_255 Sorgh... 129 3e-029
gb|CN129574.1|CN129574 RHOH1_36_E05.b3_A002 Acid- and alkal... 127 2e-028
gb|BE357339.1|BE357339 DG1_148_D12.g1_A002 Dark Grown 1 (DG... 122 5e-027
gb|CD219969.1|CD219969 CCC1_60_F06.b1_A007 Callus culture/c... 122 7e-027
gb|AW282791.1|AW282791 LG1_290_D05.g1_A002 Light Grown 1 (L... 120 2e-026
gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassino... 118 6e-026
gb|CW056868.1|CW056868 104_298_10517912_115_30157 Sorghum m... 117 1e-025
gb|CW481819.1|CW481819 fsbb001f241j14k0 Sorghum methylation... 112 5e-024
gb|CL197184.1|CL197184 104_424_10943572_114_32383_016 Sorgh... 111 1e-023
gb|CW235189.1|CW235189 104_690_11214849_148_37413_041 Sorgh... 111 1e-023
gb|CL167975.1|CL167975 104_365_10810478_116_31805_158 Sorgh... 110 2e-023
gb|CW082277.1|CW082277 104_424_10943572_114_32334_016 Sorgh... 110 2e-023
gb|BG933529.1|BG933529 WS1_4_E04.b1_A002 Water-stressed 1 (... 110 3e-023
gb|CD227828.1|CD227828 CCC1_56_G02.b1_A007 Callus culture/c... 107 1e-022
gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stress... 107 2e-022
gb|CX608205.1|CX608205 ANR1_37_F12.b1_A002 Anaerobic roots ... 102 6e-021
gb|BF655935.1|BF655935 FM1_42_G12.g1_A003 Floral-Induced Me... 101 8e-021
>gb|AW285511.1|AW285511 LG1_241_E06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 286 bits (619), Expect(2) = 4e-078
Identities = 118/120 (98%), Positives = 118/120 (98%)
Frame = +2 / +2
Query: 2 GGDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS 181
GGDDVDDEF DLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS
Sbjct: 68 GGDDVDDEFADLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS 247
Query: 182 FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSQNQQIGGSFTFP* 361
FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPS NQQIGGSFTFP*
Sbjct: 248 FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSGNQQIGGSFTFP* 427
Score = 253 bits (546), Expect(2) = 2e-068
Identities = 105/123 (85%), Positives = 106/123 (86%)
Frame = -3 / -3
Query: 369 ESFHGNVNDPPICWFWDGGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCAS 190
+ G V DPPICWF DGGLMATHS EMVMER PAQTKTMVGVRPLRPIRPLANGYRCAS
Sbjct: 435 QELQGKVKDPPICWFPDGGLMATHSREMVMERSPAQTKTMVGVRPLRPIRPLANGYRCAS 256
Query: 189 TQKLKKTPPSSLLHCGISL*MVRLNPTAMPIRFTIMITMGGIISDVHLTMYRXXXXXXXX 10
TQKLKKTPPSSLLHCGISL*MVRL PTAMPIRFTIMITMGGIISDVHLTMYR
Sbjct: 255 TQKLKKTPPSSLLHCGISL*MVRLKPTAMPIRFTIMITMGGIISDVHLTMYRSANSSSTS 76
Query: 9 SPP 1
SPP
Sbjct: 75 SPP 67
Score = 181 bits (389), Expect(2) = 2e-046
Identities = 84/120 (70%), Positives = 88/120 (73%)
Frame = -2 / -2
Query: 361 SRECERPTNLLVLGRRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPE 182
S E E TNLLV RVDG PQQ DGDGEE+ PDEDDG RA PPHQALGERVQVRQHPE
Sbjct: 427 SGEGEGSTNLLVPRWRVDGDPQQGDGDGEESCPDEDDGGRAPSPPHQALGERVQVRQHPE 248
Query: 181 AEEDAAQQLAPLRDLAVDGAAEPDRDADQVXXXXXXXXXXXXRPLDDVQVRELVVHVVAA 2
AEED QQLAPLRDLAVDGAAE +ADQV PLDDVQV +LVVHVVA+
Sbjct: 247 AEEDTTQQLAPLRDLAVDGAAEAHGNADQVHHHDHDGRDHQRCPLDDVQVCKLVVHVVAS 68
Score = 123 bits (263), Expect(2) = 3e-037
Identities = 49/71 (69%), Positives = 51/71 (71%)
Frame = +1 / +1
Query: 34 PVHRQVDVADDPAHRDHDGEPDRHRGRVQPHHLQRDPAVEXXXXXXXXXXXXXXXPVPVR 213
PVHRQVD+ADDPAHRDHDGEPDRH +QPHHLQRDPAVE PVPVR
Sbjct: 100 PVHRQVDIADDPAHRDHDGEPDRHCRGLQPHHLQRDPAVEQAAGWCLLQLLGAGAPVPVR 279
Query: 214 QGPDGAEGPHA 246
QGPDGAE HA
Sbjct: 280 QGPDGAERAHA 312
Score = 52.8 bits (109), Expect(2) = 3e-037
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +1 / +1
Query: 295 AVGGHQPAVPEPADWWVVHIPVKAL 369
AVG HQPA+ EPADWW++H+P+K L
Sbjct: 361 AVGRHQPAIWEPADWWILHLPLKLL 435
Score = 28.1 bits (55), Expect(2) = 2e-068
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2 / -3
Query: 523 RQQKSSQFDSQDPTFPPAASSSDSEPLQ 440
RQ+ S FDSQ+PT ++ S D L+
Sbjct: 573 RQKGPSHFDSQNPTSRSSSESEDETLLE 490
Score = 26.7 bits (52), Expect(2) = 4e-078
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1 / +3
Query: 445 AVHYLRTKLLGGMWDPDCRTGYFFVVEA 528
A + +T+ G WD DCR G VE+
Sbjct: 495 AAFHPQTQSCCGKWDSDCRNG*GLFVES 578
Score = 26.3 bits (51), Expect(2) = 2e-046
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3 / -1
Query: 537 SIISFDNKKVASSTVRIP 484
++ +FD K +A STVRIP
Sbjct: 587 TVSAFDKKALAISTVRIP 534
>gb|BE363123.1|BE363123 DG1_9_B09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 286 bits (619), Expect(2) = 4e-078
Identities = 118/120 (98%), Positives = 118/120 (98%)
Frame = +2 / +3
Query: 2 GGDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS 181
GGDDVDDEF DLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS
Sbjct: 27 GGDDVDDEFADLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFS 206
Query: 182 FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSQNQQIGGSFTFP* 361
FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPS NQQIGGSFTFP*
Sbjct: 207 FWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSGNQQIGGSFTFP* 386
Score = 253 bits (546), Expect(2) = 2e-068
Identities = 105/123 (85%), Positives = 106/123 (86%)
Frame = -3 / -2
Query: 369 ESFHGNVNDPPICWFWDGGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCAS 190
+ G V DPPICWF DGGLMATHS EMVMER PAQTKTMVGVRPLRPIRPLANGYRCAS
Sbjct: 394 QELQGKVKDPPICWFPDGGLMATHSREMVMERSPAQTKTMVGVRPLRPIRPLANGYRCAS 215
Query: 189 TQKLKKTPPSSLLHCGISL*MVRLNPTAMPIRFTIMITMGGIISDVHLTMYRXXXXXXXX 10
TQKLKKTPPSSLLHCGISL*MVRL PTAMPIRFTIMITMGGIISDVHLTMYR
Sbjct: 214 TQKLKKTPPSSLLHCGISL*MVRLKPTAMPIRFTIMITMGGIISDVHLTMYRSANSSSTS 35
Query: 9 SPP 1
SPP
Sbjct: 34 SPP 26
Score = 181 bits (389), Expect(2) = 3e-046
Identities = 84/120 (70%), Positives = 88/120 (73%)
Frame = -2 / -1
Query: 361 SRECERPTNLLVLGRRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPE 182
S E E TNLLV RVDG PQQ DGDGEE+ PDEDDG RA PPHQALGERVQVRQHPE
Sbjct: 386 SGEGEGSTNLLVPRWRVDGDPQQGDGDGEESCPDEDDGGRAPSPPHQALGERVQVRQHPE 207
Query: 181 AEEDAAQQLAPLRDLAVDGAAEPDRDADQVXXXXXXXXXXXXRPLDDVQVRELVVHVVAA 2
AEED QQLAPLRDLAVDGAAE +ADQV PLDDVQV +LVVHVVA+
Sbjct: 206 AEEDTTQQLAPLRDLAVDGAAEAHGNADQVHHHDHDGRDHQRCPLDDVQVCKLVVHVVAS 27
Score = 123 bits (263), Expect(2) = 3e-037
Identities = 49/71 (69%), Positives = 51/71 (71%)
Frame = +1 / +2
Query: 34 PVHRQVDVADDPAHRDHDGEPDRHRGRVQPHHLQRDPAVEXXXXXXXXXXXXXXXPVPVR 213
PVHRQVD+ADDPAHRDHDGEPDRH +QPHHLQRDPAVE PVPVR
Sbjct: 59 PVHRQVDIADDPAHRDHDGEPDRHCRGLQPHHLQRDPAVEQAAGWCLLQLLGAGAPVPVR 238
Query: 214 QGPDGAEGPHA 246
QGPDGAE HA
Sbjct: 239 QGPDGAERAHA 271
Score = 52.8 bits (109), Expect(2) = 3e-037
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +1 / +2
Query: 295 AVGGHQPAVPEPADWWVVHIPVKAL 369
AVG HQPA+ EPADWW++H+P+K L
Sbjct: 320 AVGRHQPAIWEPADWWILHLPLKLL 394
Score = 28.1 bits (55), Expect(2) = 2e-068
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2 / -2
Query: 523 RQQKSSQFDSQDPTFPPAASSSDSEPLQ 440
RQ+ S FDSQ+PT ++ S D L+
Sbjct: 532 RQKGPSHFDSQNPTSRSSSESEDETLLE 449
Score = 26.7 bits (52), Expect(2) = 4e-078
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1 / +1
Query: 445 AVHYLRTKLLGGMWDPDCRTGYFFVVEA 528
A + +T+ G WD DCR G VE+
Sbjct: 454 AAFHPQTQSCCGKWDSDCRNG*GLFVES 537
Score = 25.4 bits (49), Expect(2) = 3e-046
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3 / -3
Query: 528 SFDNKKVASSTVRIP 484
+FD K +A STVRIP
Sbjct: 537 AFDKKALAISTVRIP 493
>gb|BG103495.1|BG103495 RHIZ2_37_C06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 380
Score = 227 bits (491), Expect = 1e-058
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = +2 / +3
Query: 74 IVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTI 253
IVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTI
Sbjct: 3 IVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTI 182
Query: 254 VFVWAGLLSITISLLWVAINPPSQNQQIGGSFTFP* 361
VFVWAGLLSITISLLWVAINPPS NQQIGGSFTFP*
Sbjct: 183 VFVWAGLLSITISLLWVAINPPSGNQQIGGSFTFP* 290
Score = 215 bits (465), Expect = 4e-055
Identities = 89/99 (89%), Positives = 90/99 (90%)
Frame = -3 / -2
Query: 369 ESFHGNVNDPPICWFWDGGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCAS 190
+ G V DPPICWF DGGLMATHS EMVMER PAQTKTMVGVRPLRPIRPLANGYRCAS
Sbjct: 298 QELQGKVKDPPICWFPDGGLMATHSREMVMERSPAQTKTMVGVRPLRPIRPLANGYRCAS 119
Query: 189 TQKLKKTPPSSLLHCGISL*MVRLNPTAMPIRFTIMITM 73
TQKLKKTPPSSLLHCGISL*MVRL PTAMPIRFTIMITM
Sbjct: 118 TQKLKKTPPSSLLHCGISL*MVRLKPTAMPIRFTIMITM 2
Score = 157 bits (337), Expect = 2e-037
Identities = 71/94 (75%), Positives = 73/94 (77%)
Frame = -2 / -1
Query: 373 PRELSRECERPTNLLVLGRRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVR 194
P S E E TNLLV RVDG PQQ DGDGEE+ PDEDDG RA PPHQALGE VQVR
Sbjct: 302 PARASGEGEGSTNLLVPRWRVDGDPQQGDGDGEESCPDEDDGGRAPSPPHQALGEWVQVR 123
Query: 193 QHPEAEEDAAQQLAPLRDLAVDGAAEPDRDADQV 92
QHPEAEED AQQLAPLRDLAVDGAAE +ADQV
Sbjct: 122 QHPEAEEDTAQQLAPLRDLAVDGAAEAHGNADQV 21
Score = 88.1 bits (186), Expect(2) = 1e-026
Identities = 35/58 (60%), Positives = 37/58 (63%)
Frame = +1 / +2
Query: 73 HRDHDGEPDRHRGRVQPHHLQRDPAVEXXXXXXXXXXXXXXXPVPVRQGPDGAEGPHA 246
H DHDGEPDRH +QPHHLQRDPAVE PVP+RQGPDGAE HA
Sbjct: 2 HCDHDGEPDRHCRGLQPHHLQRDPAVEQAAGRCLLQLLGAGAPVPIRQGPDGAERAHA 175
Score = 52.8 bits (109), Expect(2) = 1e-026
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +1 / +2
Query: 295 AVGGHQPAVPEPADWWVVHIPVKAL 369
AVG HQPA+ EPADWW++H+P+K L
Sbjct: 224 AVGRHQPAIWEPADWWILHLPLKLL 298
>gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505258, DNA
sequence
Length = 675
Score = 203 bits (437), Expect = 3e-051
Identities = 76/112 (67%), Positives = 94/112 (83%)
Frame = +2 / +2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D DD F +LY+VKWTSL IPP+ ++ +N+I + VG SRT+Y+EIPQ+SKLLGG FFSFW
Sbjct: 176 EDDDDPFAELYLVKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFW 355
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSQNQQIGG 343
VLAH YPFAKGLMGRRGRTPT+V+VWAGL+SIT+SLLW+ I+PP GG
Sbjct: 356 VLAHYYPFAKGLMGRRGRTPTLVYVWAGLISITVSLLWITISPPDDRITQGG 511
Score = 126 bits (269), Expect = 4e-028
Identities = 61/110 (55%), Positives = 67/110 (60%)
Frame = -3 / -1
Query: 366 SFHGNVNDPPICWFWDGGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCAST 187
S + + PP GGLM S E VME PAQT T VGVRP RP+ PLANG CAST
Sbjct: 534 SLDDHTSMPPWVILSSGGLMVIQSRETVMEMSPAQT*TRVGVRPRRPMSPLANG**CAST 355
Query: 186 QKLKKTPPSSLLHCGISL*MVRLNPTAMPIRFTIMITMGGIISDVHLTMY 37
QKLKK PPSSLL+CGIS VR PT + + GGI SDVH T Y
Sbjct: 354 QKLKKPPPSSLLYCGISAYTVRDTPTTSAMMLIPITANGGIKSDVHFTRY 205
Score = 111 bits (238), Expect = 8e-024
Identities = 48/75 (64%), Positives = 54/75 (72%)
Frame = -2 / -3
Query: 316 RVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPEAEEDAAQQLAPLRDL 137
R DG P+Q DGDG+E RPD D+GR A+ H+ LGERV VRQHPEAEE AAQQLA LRDL
Sbjct: 484 RADGDPEQGDGDGDEPRPDVDEGRCASAAAHEPLGERVVVRQHPEAEEAAAQQLAVLRDL 305
Query: 136 AVDGAAEPDRDADQV 92
V GA D + D V
Sbjct: 304 RVHGAGHADDERDDV 260
>gb|CL190999.1|CL190999 104_409_10906474_116_32497_037 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906474, DNA
sequence
Length = 770
Score = 200 bits (432), Expect = 1e-050
Identities = 76/104 (73%), Positives = 92/104 (88%)
Frame = +2 / -2
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D +D + DLY+VKW+SL+IPPI I M+NLI IA F+RT+YS+ P+W K +GG FFSFW
Sbjct: 616 EDNEDIYADLYVVKWSSLLIPPITIGMINLIAIAFAFARTVYSDNPRWGKFIGGGFFSFW 437
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPP 319
VLAHLYPFAKGLMGRRG+TPTIVFVW+GL+SITISLLWVAI+PP
Sbjct: 436 VLAHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAISPP 305
Score = 124 bits (265), Expect = 1e-027
Identities = 57/92 (61%), Positives = 64/92 (69%)
Frame = -3 / +3
Query: 318 GGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCASTQKLKKTPPSSLLHCGI 139
GGLMAT S EMVME P QTKTMVGV P RP+RPLA G RCASTQKLKK PP +L G+
Sbjct: 306 GGLMATQSREMVMEMSPDQTKTMVGVLPRRPMRPLAKG*RCASTQKLKKPPPMNLPQRGL 485
Query: 138 SL*MVRLNPTAMPIRFTIMITMGGIISDVHLT 43
SL* VR AM +R + + MGG+ D H T
Sbjct: 486 SL*TVRAKAKAMAMRLIMPMVMGGMSRDDHFT 581
Score = 119 bits (255), Expect = 3e-026
Identities = 52/96 (54%), Positives = 65/96 (67%)
Frame = -2 / +2
Query: 319 RRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPEAEEDAAQQLAPLRD 140
RR DG+P+Q DGDG+E+RP+EDDG R A H+ALGE V+VRQHPEAEE AA +LAP R
Sbjct: 305 RRADGNPEQGDGDGDESRPNEDDGGRLAAAAHEALGEGVEVRQHPEAEEAAADELAPARV 484
Query: 139 LAVDGAAEPDRDADQVXXXXXXXXXXXXRPLDDVQV 32
+AVDGA E + + D+V PL V+V
Sbjct: 485 VAVDGAREGEGNGDEVDHADGDGRDEQR*PLHHVEV 592
>gb|CW411521.1|CW411521 fsbb001f106l17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f106l17, DNA
sequence
Length = 677
Score = 200 bits (432), Expect = 1e-050
Identities = 76/104 (73%), Positives = 92/104 (88%)
Frame = +2 / -3
Query: 8 DDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFW 187
+D +D + DLY+VKW+SL+IPPI I M+NLI IA F+RT+YS+ P+W K +GG FFSFW
Sbjct: 435 EDNEDIYADLYVVKWSSLLIPPITIGMINLIAIAFAFARTVYSDNPRWGKFIGGGFFSFW 256
Query: 188 VLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPP 319
VLAHLYPFAKGLMGRRG+TPTIVFVW+GL+SITISLLWVAI+PP
Sbjct: 255 VLAHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAISPP 124
Score = 124 bits (265), Expect = 1e-027
Identities = 57/92 (61%), Positives = 64/92 (69%)
Frame = -3 / +2
Query: 318 GGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCASTQKLKKTPPSSLLHCGI 139
GGLMAT S EMVME P QTKTMVGV P RP+RPLA G RCASTQKLKK PP +L G+
Sbjct: 125 GGLMATQSREMVMEMSPDQTKTMVGVLPRRPMRPLAKG*RCASTQKLKKPPPMNLPQRGL 304
Query: 138 SL*MVRLNPTAMPIRFTIMITMGGIISDVHLT 43
SL* VR AM +R + + MGG+ D H T
Sbjct: 305 SL*TVRAKAKAMAMRLIMPMVMGGMSRDDHFT 400
Score = 119 bits (255), Expect = 3e-026
Identities = 52/96 (54%), Positives = 65/96 (67%)
Frame = -2 / +1
Query: 319 RRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPEAEEDAAQQLAPLRD 140
RR DG+P+Q DGDG+E+RP+EDDG R A H+ALGE V+VRQHPEAEE AA +LAP R
Sbjct: 124 RRADGNPEQGDGDGDESRPNEDDGGRLAAAAHEALGEGVEVRQHPEAEEAAADELAPARV 303
Query: 139 LAVDGAAEPDRDADQVXXXXXXXXXXXXRPLDDVQV 32
+AVDGA E + + D+V PL V+V
Sbjct: 304 VAVDGAREGEGNGDEVDHADGDGRDEQR*PLHHVEV 411
>gb|CF071040.1|CF071040 FE1_15_B03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_B03_A002 3', mRNA sequence
Length = 505
Score = 178 bits (384), Expect(3) = 6e-049
Identities = 73/76 (96%), Positives = 73/76 (96%)
Frame = +2 / +3
Query: 134 SEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAIN 313
SEIPQWSKLLGGVFFSFWVLAHLYPFAK LMGRRGRTPTIVFVWAGLLSITISLLWVAIN
Sbjct: 3 SEIPQWSKLLGGVFFSFWVLAHLYPFAKALMGRRGRTPTIVFVWAGLLSITISLLWVAIN 182
Query: 314 PPSQNQQIGGSFTFP* 361
PPS NQQIGGSF FP*
Sbjct: 183 PPSGNQQIGGSFPFP* 230
Score = 167 bits (360), Expect(3) = 2e-046
Identities = 68/79 (86%), Positives = 69/79 (87%)
Frame = -3 / -1
Query: 369 ESFHGNVNDPPICWFWDGGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCAS 190
+ G DPPICWF DGGLMATHS EMVMER PAQTKTMVGVRPLRPIR LANGYRCAS
Sbjct: 238 QELQGKGKDPPICWFPDGGLMATHSREMVMERSPAQTKTMVGVRPLRPIRALANGYRCAS 59
Query: 189 TQKLKKTPPSSLLHCGISL 133
TQKLKKTPPSSLLHCGISL
Sbjct: 58 TQKLKKTPPSSLLHCGISL 2
Score = 134 bits (287), Expect(3) = 2e-034
Identities = 59/76 (77%), Positives = 60/76 (78%)
Frame = -2 / -3
Query: 361 SRECERPTNLLVLGRRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPE 182
S E E TNLLV RVDG PQQ DGDGEE+ PDEDDG RA PPHQ LGERVQVRQHPE
Sbjct: 230 SGEGEGSTNLLVPRWRVDGDPQQGDGDGEESCPDEDDGGRAPSPPHQGLGERVQVRQHPE 51
Query: 181 AEEDAAQQLAPLRDLA 134
AEED QQLAPLRDLA
Sbjct: 50 AEEDTTQQLAPLRDLA 3
Score = 29.9 bits (59), Expect(3) = 2e-046
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1 / -2
Query: 614 LWDQNMYFIYSKNKRTKELL 555
L ++MY +KNKRTKELL
Sbjct: 462 LGSEHMYIYNNKNKRTKELL 403
Score = 28.1 bits (55), Expect(3) = 6e-049
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / +1
Query: 558 *FFCSFVFAIYKIHV 602
*FFCSF+F I IH+
Sbjct: 406 *FFCSFIFVIIYIHM 450
Score = 28.1 bits (55), Expect(3) = 2e-046
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2 / -1
Query: 523 RQQKSSQFDSQDPTFPPAASSSDSEPLQ 440
RQ+ S FDSQ+PT ++ S D L+
Sbjct: 376 RQKGPSHFDSQNPTSRSSSESEDETLLE 293
Score = 27.2 bits (53), Expect(3) = 6e-049
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1 / +1
Query: 445 AVHYLRTKLLGGMWDPDCRTGYFFVVEA 528
A + +T+ G WD DCR G VE+
Sbjct: 298 AAFHPQTQSCCGKWDSDCRNG*ALFVES 381
Score = 25.8 bits (50), Expect(3) = 2e-034
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3 / -2
Query: 537 SIISFDNKKVASSTVRIP 484
++ +FD K +A STVRIP
Sbjct: 390 TVSAFDKKGLAISTVRIP 337
Score = 24.4 bits (47), Expect(3) = 2e-034
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3 / -1
Query: 600 HVFYI*QKQKNKRTTTIAHH 541
+V+ *QK KNKRTT H+
Sbjct: 448 YVYI**QK*KNKRTTLAHHN 389
>gb|CW464011.1|CW464011 fsbb001f213a09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213a09, DNA
sequence
Length = 634
Score = 194 bits (419), Expect = 8e-049
Identities = 74/96 (77%), Positives = 87/96 (90%)
Frame = +2 / -2
Query: 32 DLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPF 211
DLY+VKW+SL+IPPI I M+NLI IA F+RT+YS+ P+W K +GG FFSFWVLAHLYPF
Sbjct: 633 DLYVVKWSSLLIPPITIGMINLIAIAFAFARTVYSDNPRWGKFIGGGFFSFWVLAHLYPF 454
Query: 212 AKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPP 319
AKGLMGRRG+TPTIVFVW+GL+SITISLLWVAI+PP
Sbjct: 453 AKGLMGRRGKTPTIVFVWSGLISITISLLWVAISPP 346
Score = 124 bits (265), Expect = 1e-027
Identities = 57/92 (61%), Positives = 64/92 (69%)
Frame = -3 / +2
Query: 318 GGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCASTQKLKKTPPSSLLHCGI 139
GGLMAT S EMVME P QTKTMVGV P RP+RPLA G RCASTQKLKK PP +L G+
Sbjct: 347 GGLMATQSREMVMEMSPDQTKTMVGVLPRRPMRPLAKG*RCASTQKLKKPPPMNLPQRGL 526
Query: 138 SL*MVRLNPTAMPIRFTIMITMGGIISDVHLT 43
SL* VR AM +R + + MGG+ D H T
Sbjct: 527 SL*TVRAKAKAMAMRLIMPMVMGGMSRDDHFT 622
Score = 119 bits (255), Expect = 3e-026
Identities = 52/96 (54%), Positives = 65/96 (67%)
Frame = -2 / +1
Query: 319 RRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPEAEEDAAQQLAPLRD 140
RR DG+P+Q DGDG+E+RP+EDDG R A H+ALGE V+VRQHPEAEE AA +LAP R
Sbjct: 346 RRADGNPEQGDGDGDESRPNEDDGGRLAAAAHEALGEGVEVRQHPEAEEAAADELAPARV 525
Query: 139 LAVDGAAEPDRDADQVXXXXXXXXXXXXRPLDDVQV 32
+AVDGA E + + D+V PL V+V
Sbjct: 526 VAVDGAREGEGNGDEVDHADGDGRDEQR*PLHHVEV 633
>gb|CW026623.1|CW026623 104_252_10498051_116_30520 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498051, DNA
sequence
Length = 650
Score = 169 bits (363), Expect = 4e-041
Identities = 64/91 (70%), Positives = 78/91 (85%)
Frame = +2 / +2
Query: 71 PIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPT 250
P+ IMMVN + +AV +RT+YSE PQWSKLLGG FFSFWVL HLYPFAKGL+GRRGR PT
Sbjct: 2 PVTIMMVNAVAVAVASARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPT 181
Query: 251 IVFVWAGLLSITISLLWVAINPPSQNQQIGG 343
IVFVW+GL+S+TISLLWV I+PP+ +++ G
Sbjct: 182 IVFVWSGLISMTISLLWVYISPPAGARELIG 274
Score = 120 bits (257), Expect = 2e-026
Identities = 57/83 (68%), Positives = 58/83 (69%)
Frame = -3 / -3
Query: 318 GGLMATHSSEMVMERRPAQTKTMVGVRPLRPIRPLANGYRCASTQKLKKTPPSSLLHCGI 139
GGLM T SSEMVME P QT TMVG RP RP PLANG R STQKLKK PPSSLLHCG
Sbjct: 249 GGLM*TQSSEMVMEMSPDQTNTMVGTRPRRPRSPLANG*RWHSTQKLKKAPPSSLLHCGN 70
Query: 138 SL*MVRLNPTAMPIRFTIMITMG 70
SL VR + TA FTIMI G
Sbjct: 69 SLYSVRADATATATAFTIMIVTG 1
Score = 105 bits (225), Expect = 5e-022
Identities = 46/76 (60%), Positives = 53/76 (69%)
Frame = -2 / -2
Query: 319 RRVDGHPQQRDGDGEEARPDEDDGRRAAPPPHQALGERVQVRQHPEAEEDAAQQLAPLRD 140
RR D P+QRDG G+E RPDE DGR A ++LGERV+V QHPEAEE AAQQLAPLR+
Sbjct: 250 RRADVDPEQRDGHGDEPRPDEHDGRHTAAAAQESLGERVEVAQHPEAEEGAAQQLAPLRE 71
Query: 139 LAVDGAAEPDRDADQV 92
LAV A R +V
Sbjct: 70 LAVQRARRRHRHRHRV 23
>gb|CD211868.1|CD211868 HS1_67_A05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_67_A05_A012 3', mRNA sequence
Length = 539
Score = 151 bits (324), Expect = 1e-035
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D + +F +LY+ KWT+L+IPP I+++NLIG+ G S I S W L G +FF+FWV
Sbjct: 1 DEEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 180
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMG++ RTPTIVFVWA LL+ SLLWV I+P
Sbjct: 181 IVHLYPFLKGLMGKQNRTPTIVFVWATLLASIFSLLWVRIDP 306
>gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 669
Score = 150 bits (323), Expect = 1e-035
Identities = 57/102 (55%), Positives = 73/102 (71%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 211 DEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWV 390
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 391 IVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 516
>gb|BG557221.1|BG557221 EM1_44_B10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 150 bits (323), Expect = 1e-035
Identities = 57/102 (55%), Positives = 73/102 (71%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 4 DEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWV 183
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 184 IVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 309
>gb|CF071834.1|CF071834 FE1_19_D03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_19_D03_A002 3', mRNA sequence
Length = 615
Score = 150 bits (323), Expect = 1e-035
Identities = 57/102 (55%), Positives = 73/102 (71%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 13 DEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWV 192
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 193 IVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 318
>gb|CF771740.1|CF771740 DSBF1_23_E06.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_23_E06_A010 3', mRNA sequence
Length = 633
Score = 150 bits (323), Expect = 1e-035
Identities = 57/102 (55%), Positives = 73/102 (71%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 3 DEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWV 182
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 183 IVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 308
>gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_C03_A002 3', mRNA sequence
Length = 857
Score = 150 bits (323), Expect = 1e-035
Identities = 57/102 (55%), Positives = 73/102 (71%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 162 DEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWV 341
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 342 IVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 467
>gb|CN128754.1|CN128754 RHOH1_31_H09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_31_H09_A002 3', mRNA sequence
Length = 705
Score = 150 bits (323), Expect = 1e-035
Identities = 57/102 (55%), Positives = 73/102 (71%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 85 DEDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWV 264
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 265 IVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 390
>gb|CL167974.1|CL167974 104_365_10810478_114_31804_158 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810478, DNA
sequence
Length = 777
Score = 150 bits (322), Expect = 2e-035
Identities = 55/102 (53%), Positives = 73/102 (71%)
Frame = +2 / +2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D DDEF +LY KWT+L+IPP ++++N+IG+ G S I + W L G +FF+FWV
Sbjct: 257 DEDDEFAELYAFKWTTLLIPPTTLLIINIIGVVAGISDAINNGYQSWGPLFGKLFFAFWV 436
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SLLWV I+P
Sbjct: 437 IVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDP 562
>gb|CW031320.1|CW031320 104_259_10500738_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500738, DNA
sequence
Length = 854
Score = 150 bits (322), Expect = 2e-035
Identities = 55/102 (53%), Positives = 73/102 (71%)
Frame = +2 / -3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D DDEF +LY KWT+L+IPP ++++N+IG+ G S I + W L G +FF+FWV
Sbjct: 480 DEDDEFAELYAFKWTTLLIPPTTLLIINIIGVVAGISDAINNGYQSWGPLFGKLFFAFWV 301
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SLLWV I+P
Sbjct: 300 IVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDP 175
>gb|CW235188.1|CW235188 104_690_11214849_116_37409_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214849, DNA
sequence
Length = 601
Score = 150 bits (322), Expect = 2e-035
Identities = 55/102 (53%), Positives = 73/102 (71%)
Frame = +2 / -2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D DDEF +LY KWT+L+IPP ++++N+IG+ G S I + W L G +FF+FWV
Sbjct: 399 DEDDEFAELYAFKWTTLLIPPTTLLIINIIGVVAGISDAINNGYQSWGPLFGKLFFAFWV 220
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SLLWV I+P
Sbjct: 219 IVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDP 94
>gb|CW315001.1|CW315001 104_805_11472128_148_35822_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472128, DNA
sequence
Length = 685
Score = 150 bits (322), Expect = 2e-035
Identities = 55/102 (53%), Positives = 73/102 (71%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D DDEF +LY KWT+L+IPP ++++N+IG+ G S I + W L G +FF+FWV
Sbjct: 217 DEDDEFAELYAFKWTTLLIPPTTLLIINIIGVVAGISDAINNGYQSWGPLFGKLFFAFWV 396
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SLLWV I+P
Sbjct: 397 IVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDP 522
>gb|CW413531.1|CW413531 fsbb001f112l18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112l18, DNA
sequence
Length = 427
Score = 150 bits (322), Expect = 2e-035
Identities = 55/102 (53%), Positives = 73/102 (71%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D DDEF +LY KWT+L+IPP ++++N+IG+ G S I + W L G +FF+FWV
Sbjct: 120 DEDDEFAELYAFKWTTLLIPPTTLLIINIIGVVAGISDAINNGYQSWGPLFGKLFFAFWV 299
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SLLWV I+P
Sbjct: 300 IVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDP 425
>gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593130, DNA
sequence
Length = 591
Score = 149 bits (320), Expect = 4e-035
Identities = 56/102 (54%), Positives = 72/102 (70%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS WV
Sbjct: 276 DEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWV 455
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 456 ILHLYPFLKGLMGRQNRTPTIVIVWSILLATIFSLLWVKIDP 581
>gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593130, DNA
sequence
Length = 638
Score = 149 bits (319), Expect = 5e-035
Identities = 56/102 (54%), Positives = 72/102 (70%)
Frame = +2 / -2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS WV
Sbjct: 469 DEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWV 290
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 289 ILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDP 164
>gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068m13, DNA
sequence
Length = 659
Score = 149 bits (319), Expect = 5e-035
Identities = 56/102 (54%), Positives = 72/102 (70%)
Frame = +2 / +2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS WV
Sbjct: 242 DEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWV 421
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 422 ILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDP 547
>gb|BE918570.1|BE918570 OV1_8_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 631
Score = 149 bits (319), Expect = 5e-035
Identities = 56/102 (54%), Positives = 72/102 (70%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS WV
Sbjct: 87 DEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWV 266
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 267 ILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDP 392
>gb|BF317903.1|BF317903 OV1_9_B10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 511
Score = 149 bits (319), Expect = 5e-035
Identities = 56/102 (54%), Positives = 72/102 (70%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWTSL+IPP ++++NL+G+ G S I S W L G +FFS WV
Sbjct: 87 DEDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWV 266
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 267 ILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDP 392
>gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_H10_A002 3', mRNA sequence
Length = 785
Score = 149 bits (319), Expect = 5e-035
Identities = 56/102 (54%), Positives = 72/102 (70%)
Frame = +2 / +2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWT+ +IPP I+++NL+G+ G S I S W L G +FF+FWV
Sbjct: 158 DEDGDFAELYMFKWTTFLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWV 337
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 338 IVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 463
>gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11141932, DNA
sequence
Length = 621
Score = 148 bits (318), Expect = 7e-035
Identities = 56/102 (54%), Positives = 73/102 (71%)
Frame = +2 / -3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D + +F +LY+ KWT+L+IPP I+++NLIG+ G S I S W L G +FF+FWV
Sbjct: 391 DEEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 212
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMG++ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 211 IVHLYPFLKGLMGKQNRTPTIVLVWATLLASIFSLLWVRIDP 86
>gb|AW286294.1|AW286294 LG1_330_A01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 148 bits (318), Expect = 7e-035
Identities = 56/102 (54%), Positives = 73/102 (71%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D + +F +LY+ KWT+L+IPP I+++NLIG+ G S I S W L G +FF+FWV
Sbjct: 1 DEEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 180
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMG++ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 181 IVHLYPFLKGLMGKQNRTPTIVLVWATLLASIFSLLWVRIDP 306
>gb|BE598541.1|BE598541 PI1_83_C07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 148 bits (318), Expect = 7e-035
Identities = 56/102 (54%), Positives = 73/102 (71%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D + +F +LY+ KWT+L+IPP I+++NLIG+ G S I S W L G +FF+FWV
Sbjct: 51 DEEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 230
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMG++ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 231 IVHLYPFLKGLMGKQNRTPTIVLVWATLLASIFSLLWVRIDP 356
>gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_2_G12_A002 3', mRNA sequence
Length = 743
Score = 148 bits (318), Expect = 7e-035
Identities = 56/102 (54%), Positives = 73/102 (71%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D + +F +LY+ KWT+L+IPP I+++NLIG+ G S I S W L G +FF+FWV
Sbjct: 207 DEEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 386
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMG++ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 387 IVHLYPFLKGLMGKQNRTPTIVLVWATLLASIFSLLWVRIDP 512
>gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_20_C10_A002 3', mRNA sequence
Length = 666
Score = 147 bits (315), Expect = 2e-034
Identities = 56/102 (54%), Positives = 72/102 (70%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D + +F +LY+ KWT+L+IPP I+++NLIG+ G S I S W L G +FF+FWV
Sbjct: 133 DEEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFFAFWV 312
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGLMG++ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 313 TVHLYPFLKGLMGKQNRTPTIVLVWATLLASIFSLLWVRIDP 438
>gb|CX607839.1|CX607839 ANR1_31_C06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_31_C06_A002 3', mRNA sequence
Length = 841
Score = 146 bits (314), Expect = 2e-034
Identities = 55/102 (53%), Positives = 72/102 (70%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWTSL+IPP ++++NL+GI G S I S W L G +FF+ WV
Sbjct: 115 DDDGDFAELYVFKWTSLLIPPTTVLVINLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWV 294
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMG++ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 295 ILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 420
>gb|BI245815.1|BI245815 IP1_64_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 616
Score = 145 bits (312), Expect = 5e-034
Identities = 55/97 (56%), Positives = 70/97 (72%)
Frame = +2 / +3
Query: 26 FXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLY 205
F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV+ HLY
Sbjct: 3 FAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLY 182
Query: 206 PFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
PF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 183 PFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 293
>gb|CD233339.1|CD233339 SS1_13_G11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_13_G11_A012 3', mRNA sequence
Length = 616
Score = 145 bits (312), Expect = 5e-034
Identities = 55/97 (56%), Positives = 70/97 (72%)
Frame = +2 / +1
Query: 26 FXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLY 205
F +LY+ KWT+L+IPP I+++NL+G+ G S I S W L G +FF+FWV+ HLY
Sbjct: 1 FAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLY 180
Query: 206 PFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
PF KGLMGR+ RTPTIV VWA LL+ SLLWV I+P
Sbjct: 181 PFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 291
>gb|CW235147.1|CW235147 104_690_11214827_148_37411_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214827, DNA
sequence
Length = 651
Score = 145 bits (311), Expect = 6e-034
Identities = 56/66 (84%), Positives = 62/66 (93%)
Frame = +2 / -3
Query: 5 GDDVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSF 184
GDDV+DEF +LYIVKWTSLMIPP+ I+M+NL+ IAVGFSRTIYS IPQWSKLLGGVFFSF
Sbjct: 199 GDDVEDEFAELYIVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSF 20
Query: 185 WVLAHL 202
WVLAHL
Sbjct: 19 WVLAHL 2
>gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 721
Score = 144 bits (309), Expect = 1e-033
Identities = 53/100 (53%), Positives = 71/100 (71%)
Frame = +2 / +3
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 240 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIV 419
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 420 HLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDP 539
>gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 412
Score = 144 bits (309), Expect = 1e-033
Identities = 53/100 (53%), Positives = 71/100 (71%)
Frame = +2 / +1
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 37 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIV 216
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 217 HLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDP 336
>gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 144 bits (309), Expect = 1e-033
Identities = 53/100 (53%), Positives = 71/100 (71%)
Frame = +2 / +1
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 196 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVII 375
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 376 HLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDP 495
>gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 144 bits (309), Expect = 1e-033
Identities = 53/100 (53%), Positives = 71/100 (71%)
Frame = +2 / +1
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D+EF +LY KWT+L+IPP ++++N IG+ G S I + W L G +FF+FWV+
Sbjct: 25 DEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIV 204
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
HLYPF KGL+GR+ RTPTIV VW+ LL+ SLLWV I+P
Sbjct: 205 HLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDP 324
>gb|CW164547.1|CW164547 104_572_11152044_148_36463_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152044, DNA
sequence
Length = 606
Score = 141 bits (302), Expect = 1e-032
Identities = 52/98 (53%), Positives = 70/98 (71%)
Frame = +2 / -3
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D EF +LY+ KWT+++IPP I+++N++G+ GFS + S W L G VFF+ WV+
Sbjct: 295 DAEFGELYVFKWTTVLIPPTSILVLNMVGVVAGFSAALNSGYESWGPLFGKVFFAMWVIM 116
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAI 310
HLYPF KGLMGR+ RTPTIV +W+ LL+ SLLWV I
Sbjct: 115 HLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKI 2
>gb|BG947765.1|BG947765 IP1_8_G12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 141 bits (302), Expect = 1e-032
Identities = 51/102 (50%), Positives = 72/102 (70%)
Frame = +2 / +3
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D F +LY+ KWT+L++PP ++++N++GI G S + + W L G +FFSFWV
Sbjct: 9 DEADAFGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWV 188
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SL+WV I+P
Sbjct: 189 IVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDP 314
>gb|BG948058.1|BG948058 IP1_8_G12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 141 bits (302), Expect = 1e-032
Identities = 51/102 (50%), Positives = 72/102 (70%)
Frame = +2 / +2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D F +LY+ KWT+L++PP ++++N++GI G S + + W L G +FFSFWV
Sbjct: 287 DEADAFGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWV 466
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SL+WV I+P
Sbjct: 467 IVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDP 592
>gb|BI074550.1|BI074550 IP1_16_A11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 599
Score = 141 bits (302), Expect = 1e-032
Identities = 51/102 (50%), Positives = 72/102 (70%)
Frame = +2 / +2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D F +LY+ KWT+L++PP ++++N++GI G S + + W L G +FFSFWV
Sbjct: 11 DEADAFGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWV 190
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF KGLMGR+ RTPTIV +W+ LL+ SL+WV I+P
Sbjct: 191 IVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDP 316
>gb|AW283377.1|AW283377 LG1_223_D12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 140 bits (300), Expect = 2e-032
Identities = 50/99 (50%), Positives = 71/99 (71%)
Frame = +2 / +3
Query: 20 DEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAH 199
D F +LY+ KWT+L++PP ++++N++GI G S + + W L G +FFSFWV+ H
Sbjct: 3 DAFGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVH 182
Query: 200 LYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
LYPF KGLMGR+ RTPTIV +W+ LL+ SL+WV I+P
Sbjct: 183 LYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDP 299
>gb|CW224629.1|CW224629 104_662_11203928_148_37201_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203928, DNA
sequence
Length = 714
Score = 139 bits (299), Expect = 3e-032
Identities = 51/96 (53%), Positives = 69/96 (71%)
Frame = +2 / -3
Query: 17 DDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLA 196
D EF +LY+ KWT+++IPP I+++N++G+ GFS + S W L G VFF+ WV+
Sbjct: 292 DAEFGELYVFKWTTVLIPPTSILVLNMVGVVAGFSAALNSGYESWGPLFGKVFFAMWVIM 113
Query: 197 HLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWV 304
HLYPF KGLMGR+ RTPTIV +W+ LL+ SLLWV
Sbjct: 112 HLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWV 5
>gb|BZ332309.1|BZ332309 hx26h05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx26h05 5', DNA sequence
Length = 649
Score = 80.8 bits (170), Expect(2) = 4e-032
Identities = 31/45 (68%), Positives = 40/45 (88%)
Frame = +2 / -2
Query: 209 FAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINPPSQNQQIGG 343
FAKGL+GRRGR PTIVFVW+GL+S+TISLLWV I+PP+ +++ G
Sbjct: 549 FAKGLLGRRGRVPTIVFVWSGLISMTISLLWVYISPPAGARELIG 415
Score = 78.5 bits (165), Expect(2) = 4e-032
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +2 / -1
Query: 110 VGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMG 229
V +RT+YSE PQWSKLLGG FFSFWVL HLYPF +G G
Sbjct: 649 VASARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFRQGTPG 530
>gb|CF072959.1|CF072959 FE1_27_D01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_27_D01_A002 3', mRNA sequence
Length = 574
Score = 138 bits (296), Expect = 8e-032
Identities = 50/102 (49%), Positives = 71/102 (69%)
Frame = +2 / +2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D F +LY+ KWT+L++PP ++++N++GI G S + + W L G +FFSFWV
Sbjct: 5 DEADAFGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWV 184
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLLWVAINP 316
+ HLYPF K LMGR+ RTPTIV +W+ LL+ SL+WV I+P
Sbjct: 185 IVHLYPFLKALMGRQNRTPTIVVLWSILLASIFSLVWVRIDP 310
>gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 134 bits (288), Expect = 1e-030
Identities = 51/96 (53%), Positives = 67/96 (69%)
Frame = +2 / +2
Query: 11 DVDDEFXDLYIVKWTSLMIPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 190
D D +F +LY+ KWTSL+IPP ++++NL+GI G S I S W L G +FF+ WV
Sbjct: 251 DDDGDFAELYVFKWTSLLIPPTTVLVINLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWV 430
Query: 191 LAHLYPFAKGLMGRRGRTPTIVFVWAGLLSITISLL 298
+ HLYPF KGLMG++ RTPTIV VW+ LL+ SLL
Sbjct: 431 ILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLL 538
>gb|CF429881.1|CF429881 PH1_25_C04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_C04_A002 3', mRNA sequence
Length = 553
Score = 118 bits (252), Expect(2) = 2e-030
Identities = 44/84 (52%), Positives = 58/84 (69%)
Frame = +2 / +2
Query: 65 IPPIVIMMVNLIGIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRT 244
IPP ++++N+IG+ G S I + W L G +FF+FWV+ HLYPF KGLMGR+ RT
Sbjct: 71 IPPTTLLIINIIGVVAGISDAINNVYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 250
Query: 245 PTIVFVWAGLLSITISLLWVAINP 316
PTIV W+ LL+ SLLWV I+P
Sbjct: 251 PTIVVFWSVLLASIFSLLWVRIDP 322
Score = 35.0 bits (70), Expect(2) = 2e-030
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2 / +1
Query: 11 DVDDEFXDLYIVKWTSLMIP 70
D DDEF +LY KWT+L+ P
Sbjct: 16 DEDDEFAELYAFKWTTLLHP 75
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 767,135,927
Number of Sequences: 832831
Number of extensions: 11884557
Number of successful extensions: 139937
Number of sequences better than 1.0e-020: 72
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18904149054
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)