TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478343.2.1
(694 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorgh... 116 1e-028
gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum m... 94 3e-027
gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorgh... 111 5e-027
gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation... 111 5e-027
gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorgh... 111 5e-027
gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation... 106 1e-025
gb|CL155907.1|CL155907 104_342_10782487_116_31474_199 Sorgh... 102 1e-024
gb|CW049015.1|CW049015 104_288_10513772_115_30199 Sorghum m... 104 3e-024
gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorgh... 111 2e-023
gb|CW316764.1|CW316764 104_808_11473063_148_35855_026 Sorgh... 105 1e-021
gb|CW429209.1|CW429209 fsbb001f142f12k0 Sorghum methylation... 105 1e-021
gb|CD204458.1|CD204458 HS1_8_D09.b1_A012 Heat-shocked seedl... 105 1e-021
gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum m... 104 1e-021
gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorgh... 104 1e-021
gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorgh... 103 3e-021
gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation... 103 3e-021
gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation... 103 3e-021
gb|CL169524.1|CL169524 104_368_10812693_148_31808_165 Sorgh... 82 5e-021
gb|CD235990.1|CD235990 SS1_25_B04.b1_A012 Salt-stressed see... 82 5e-021
gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum m... 102 7e-021
gb|CW439050.1|CW439050 fsbb001f156p22f0 Sorghum methylation... 102 7e-021
gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation... 102 7e-021
>gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472951, DNA
sequence
Length = 665
Score = 116 bits (248), Expect(3) = 1e-028
Identities = 44/59 (74%), Positives = 49/59 (83%)
Frame = -2 / -1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EVL H AVGGF+THCGWNSTVE+V EGVPM+C P GDQ GNARYV HVW+VG EV G+
Sbjct: 608 EVLRHRAVGGFWTHCGWNSTVESVCEGVPMLCRPYFGDQMGNARYVEHVWRVGLEVGGN 432
Score = 24.4 bits (47), Expect(3) = 1e-028
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2 / -1
Query: 462 EEGEGIRKRMNELKIAADKGIDESAGS 382
EEG+ +R R ELK AA + E S
Sbjct: 377 EEGDKMRVRAGELKKAAGECTGEGGSS 297
Score = 24.4 bits (47), Expect(3) = 1e-028
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / -1
Query: 513 LERGEIKAAIDRLMGGSE 460
L RG+++AAI RLM E
Sbjct: 425 LARGQVEAAIGRLMTDEE 372
>gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506614, DNA
sequence
Length = 710
Score = 94.1 bits (199), Expect(2) = 3e-027
Identities = 35/53 (66%), Positives = 41/53 (77%)
Frame = -2 / -2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVG 535
EVL HPAVG F+THCGWNST+E+V GVP++ P GDQ GNARYV VW+ G
Sbjct: 475 EVLEHPAVGAFWTHCGWNSTLESVCAGVPIMARPCFGDQMGNARYVEDVWRTG 317
Score = 49.2 bits (101), Expect(2) = 3e-027
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = -2 / -2
Query: 534 TEVAGDQLERGEIKAAIDRLMGGSEEGEGIRKRMNELKIAADKGIDESAGS 382
T V G+++ RG+++AA+ +MG E G+G+R+R ELK +A + + E S
Sbjct: 313 TLVDGEEIVRGKVEAAVAAVMGPGESGDGLRRRARELKSSAAECMAEDGSS 161
>gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 707
Score = 111 bits (236), Expect(2) = 5e-027
Identities = 41/59 (69%), Positives = 46/59 (77%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EVL H AVGGF+THCGWNST E + EGVPM+C P GDQ G+ RYV HVW+VG EV GD
Sbjct: 507 EVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGDQMGDTRYVEHVWRVGFEVGGD 331
Score = 31.3 bits (62), Expect(2) = 5e-027
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2 / -3
Query: 522 GDQLERGEIKAAIDRLMGGSEEGE 451
G LERG ++AAI RLM G + E
Sbjct: 339 GGDLERGSVEAAIRRLMTGEDGAE 268
>gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006d02, DNA
sequence
Length = 704
Score = 111 bits (236), Expect(2) = 5e-027
Identities = 41/59 (69%), Positives = 46/59 (77%)
Frame = -2 / -1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EVL H AVGGF+THCGWNST E + EGVPM+C P GDQ G+ RYV HVW+VG EV GD
Sbjct: 527 EVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGDQMGDTRYVEHVWRVGFEVGGD 351
Score = 31.3 bits (62), Expect(2) = 5e-027
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2 / -1
Query: 522 GDQLERGEIKAAIDRLMGGSEEGE 451
G LERG ++AAI RLM G + E
Sbjct: 359 GGDLERGSVEAAIRRLMTGEDGAE 288
>gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 602
Score = 111 bits (236), Expect(2) = 5e-027
Identities = 41/59 (69%), Positives = 46/59 (77%)
Frame = -2 / -1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EVL H AVGGF+THCGWNST E + EGVPM+C P GDQ G+ RYV HVW+VG EV GD
Sbjct: 353 EVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGDQMGDTRYVEHVWRVGFEVGGD 177
Score = 31.3 bits (62), Expect(2) = 5e-027
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2 / -1
Query: 522 GDQLERGEIKAAIDRLMGGSEEGE 451
G LERG ++AAI RLM G + E
Sbjct: 185 GGDLERGSVEAAIRRLMTGEDGAE 114
>gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f081l05, DNA
sequence
Length = 604
Score = 106 bits (226), Expect(3) = 1e-025
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = -2 / -1
Query: 672 VGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
VGGF+THCGWNSTVE+V EGVPM+C P GDQ GNARYV HVW+VG EV G+
Sbjct: 469 VGGFWTHCGWNSTVESVCEGVPMLCRPYFGDQMGNARYVEHVWRVGLEVGGN 314
Score = 24.4 bits (47), Expect(3) = 1e-025
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2 / -1
Query: 462 EEGEGIRKRMNELKIAADKGIDESAGS 382
EEG+ +R R ELK AA + E S
Sbjct: 259 EEGDKMRVRAGELKKAAGECTGEGGSS 179
Score = 24.4 bits (47), Expect(3) = 1e-025
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / -1
Query: 513 LERGEIKAAIDRLMGGSE 460
L RG+++AAI RLM E
Sbjct: 307 LARGQVEAAIGRLMTDEE 254
>gb|CL155907.1|CL155907 104_342_10782487_116_31474_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782487, DNA
sequence
Length = 729
Score = 102 bits (218), Expect(2) = 1e-024
Identities = 38/53 (71%), Positives = 43/53 (81%)
Frame = -2 / -2
Query: 675 AVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
AVGGF+TH GWNST E++ EGVPM+C P GDQ GNARYV HVW+VG EV GD
Sbjct: 728 AVGGFWTHGGWNSTAESICEGVPMLCRPYFGDQMGNARYVEHVWRVGLEVGGD 570
Score = 31.8 bits (63), Expect(2) = 1e-024
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2 / -2
Query: 522 GDQLERGEIKAAIDRLMGGSEEGEGIRKRMNELKIAADKGID 397
G LERG ++AAI RLM G + E + K AA+ ++
Sbjct: 578 GGDLERGSVEAAIRRLMTGDDGAEMRTRAGELKKAAAEGTVE 453
>gb|CW049015.1|CW049015 104_288_10513772_115_30199 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 379
Score = 104 bits (221), Expect(2) = 3e-024
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EV H AVGGF+TH GWNST+E+V EGVPM+C P GDQ GNARYV HVW+VG E G+
Sbjct: 374 EVFRHRAVGGFWTHNGWNSTMESVCEGVPMLCRPYFGDQTGNARYVEHVWRVGFEDGGE 198
Score = 29.0 bits (57), Expect(2) = 3e-024
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2 / -3
Query: 522 GDQLERGEIKAAIDRLMGGSEEGE 451
G +LER ++AAI RLM G++ E
Sbjct: 206 GGELERDTVEAAIRRLMTGTDGAE 135
>gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 577
Score = 111 bits (236), Expect = 2e-023
Identities = 41/59 (69%), Positives = 46/59 (77%)
Frame = -2 / +3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EVL H AVGGF+THCGWNST E + EGVPM+C P GDQ G+ RYV HVW+VG EV GD
Sbjct: 384 EVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGDQMGDTRYVEHVWRVGFEVGGD 560
>gb|CW316764.1|CW316764 104_808_11473063_148_35855_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473063, DNA
sequence
Length = 669
Score = 105 bits (223), Expect = 1e-021
Identities = 37/56 (66%), Positives = 45/56 (80%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVL+HPA+ F TH GWNSTVE++S+GVPM+C P GDQ+G ARYVC WKVG E+
Sbjct: 616 EVLSHPAICAFLTHNGWNSTVESISQGVPMLCRPCFGDQFGTARYVCDFWKVGVEI 449
>gb|CW429209.1|CW429209 fsbb001f142f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142f12, DNA
sequence
Length = 799
Score = 105 bits (223), Expect = 1e-021
Identities = 37/56 (66%), Positives = 45/56 (80%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVL+HPA+ F TH GWNSTVE++S+GVPM+C P GDQ+G ARYVC WKVG E+
Sbjct: 182 EVLSHPAICAFLTHNGWNSTVESISQGVPMLCRPCFGDQFGTARYVCDFWKVGVEI 15
>gb|CD204458.1|CD204458 HS1_8_D09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_8_D09_A012 3', mRNA sequence
Length = 666
Score = 105 bits (223), Expect = 1e-021
Identities = 37/56 (66%), Positives = 45/56 (80%)
Frame = -2 / +2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVL+HPA+ F TH GWNSTVE++S+GVPM+C P GDQ+G ARYVC WKVG E+
Sbjct: 149 EVLSHPAICAFLTHNGWNSTVESISQGVPMLCRPCFGDQFGTARYVCDFWKVGVEI 316
>gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515929, DNA
sequence
Length = 565
Score = 104 bits (222), Expect = 1e-021
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = -2 / -1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EVLAHPAVGGF+TH GWNST+E++SEGVPMIC P+ DQ N RYV + W VG E+ G+
Sbjct: 499 EVLAHPAVGGFWTHNGWNSTLESISEGVPMICRPQFADQMMNTRYVVNTWGVGLELEGE 323
>gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 697
Score = 104 bits (222), Expect = 1e-021
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EVLAHPAVGGF+TH GWNST+E++SEGVPMIC P+ DQ N RYV + W VG E+ G+
Sbjct: 437 EVLAHPAVGGFWTHNGWNSTLESISEGVPMICRPQFADQMMNTRYVVNTWGVGLELEGE 261
>gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224968, DNA
sequence
Length = 561
Score = 103 bits (219), Expect = 3e-021
Identities = 39/98 (39%), Positives = 59/98 (60%)
Frame = -2 / +3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGDQ 514
+VLAHPA+G F THCGWNST+E V GVP++C P DQ+ N Y+C +W+VG +A +
Sbjct: 174 KVLAHPAIGCFLTHCGWNSTLEGVRHGVPLLCWPYFTDQFTNQAYICDIWRVGLRMAPND 353
Query: 513 LERGEIKAAIDRLMGGSEEGEGIRKRMNELKIAADKGI 400
+ K I + G+++R+ LK A++ +
Sbjct: 354 SDSTVTKERIMERLESLMGDSGVKERVKGLKDLAERNM 467
>gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012k24, DNA
sequence
Length = 710
Score = 103 bits (219), Expect = 3e-021
Identities = 39/98 (39%), Positives = 59/98 (60%)
Frame = -2 / +1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGDQ 514
+VLAHPA+G F THCGWNST+E V GVP++C P DQ+ N Y+C +W+VG +A +
Sbjct: 130 KVLAHPAIGCFLTHCGWNSTLEGVRHGVPLLCWPYFTDQFTNQAYICDIWRVGLRMAPND 309
Query: 513 LERGEIKAAIDRLMGGSEEGEGIRKRMNELKIAADKGI 400
+ K I + G+++R+ LK A++ +
Sbjct: 310 SDSTVTKERIMERLESLMGDSGVKERVKGLKDLAERNM 423
>gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012m22, DNA
sequence
Length = 637
Score = 103 bits (219), Expect = 3e-021
Identities = 39/98 (39%), Positives = 59/98 (60%)
Frame = -2 / +1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGDQ 514
+VLAHPA+G F THCGWNST+E V GVP++C P DQ+ N Y+C +W+VG +A +
Sbjct: 130 KVLAHPAIGCFLTHCGWNSTLEGVRHGVPLLCWPYFTDQFTNQAYICDIWRVGLRMAPND 309
Query: 513 LERGEIKAAIDRLMGGSEEGEGIRKRMNELKIAADKGI 400
+ K I + G+++R+ LK A++ +
Sbjct: 310 SDSTVTKERIMERLESLMGDSGVKERVKGLKDLAERNM 423
>gb|CL169524.1|CL169524 104_368_10812693_148_31808_165 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10812693, DNA
sequence
Length = 674
Score = 82.2 bits (173), Expect(2) = 5e-021
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = -2 / -2
Query: 690 VLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
+L H AVGGF THCGWNS +EAVS GVP++ PR+ DQ+ N + V + K+G +V
Sbjct: 346 ILEHSAVGGFVTHCGWNSVLEAVSAGVPLVTLPRYADQFYNEKLVVELLKMGVDV 182
Score = 40.0 bits (81), Expect(2) = 5e-021
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -2 / -2
Query: 531 EVAGDQLERGEIKAAIDRLMGGSEEGEGIRKRMNELKIAADKGIDESAGS 382
EV + + +I IDR+MGG++E E IRK EL+ A D+ S
Sbjct: 154 EVRREVISGEKIAEGIDRVMGGNQEAEAIRKNAMELRRKARSATDKGGTS 5
>gb|CD235990.1|CD235990 SS1_25_B04.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_25_B04_A012 3', mRNA sequence
Length = 644
Score = 82.2 bits (173), Expect(2) = 5e-021
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = -2 / +3
Query: 690 VLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
+L H AVGGF THCGWNS +EAVS GVP++ PR+ DQ+ N + V + K+G +V
Sbjct: 102 ILEHSAVGGFVTHCGWNSVLEAVSAGVPLVTLPRYADQFYNEKLVVELLKMGVDV 266
Score = 40.0 bits (81), Expect(2) = 5e-021
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -2 / +3
Query: 531 EVAGDQLERGEIKAAIDRLMGGSEEGEGIRKRMNELKIAADKGIDESAGS 382
EV + + +I IDR+MGG++E E IRK EL+ A D+ S
Sbjct: 294 EVRREVISGEKIAEGIDRVMGGNQEAEAIRKNAMELRRKARSATDKGGTS 443
>gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 556
Score = 102 bits (217), Expect = 7e-021
Identities = 39/53 (73%), Positives = 44/53 (83%)
Frame = -2 / +2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVG 535
EVL H AVGGF+TH GWNST+E+V EGVPM+C P GDQ GNARYV HVW+VG
Sbjct: 398 EVLRHRAVGGFWTHNGWNSTMESVCEGVPMLCRPYFGDQTGNARYVEHVWRVG 556
>gb|CW439050.1|CW439050 fsbb001f156p22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156p22, DNA
sequence
Length = 466
Score = 102 bits (217), Expect = 7e-021
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = -2 / -1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGD 517
EVLAH AVGGF++HCGWNST+EA+SEGVPMIC P DQ N RYV VW VG E+ G+
Sbjct: 379 EVLAHRAVGGFWSHCGWNSTLEAISEGVPMICRPDAVDQMMNTRYVQDVWGVGLELEGE 203
>gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235j04, DNA
sequence
Length = 541
Score = 102 bits (217), Expect = 7e-021
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = -2 / +2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVG 535
EVL H AVGGF+THCGWNST E + EGVPM+C P GDQ G+ RYV HVW+VG
Sbjct: 380 EVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGDQMGDTRYVEHVWRVG 538
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 655,924,308
Number of Sequences: 832831
Number of extensions: 8340604
Number of successful extensions: 99146
Number of sequences better than 1.0e-020: 22
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20911208032
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)