TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF489853.1|CF489853 POL1_61_B06.b1_A002 Pollen Sorghum b... 391 e-112
gb|CN135994.1|CN135994 OX1_40_D12.b1_A002 Oxidatively-stres... 271 9e-076
gb|CW407061.1|CW407061 fsbb001f100f21k0 Sorghum methylation... 106 7e-046
gb|CW275770.1|CW275770 104_749_11405136_148_35393_094 Sorgh... 106 1e-043
gb|BZ352082.1|BZ352082 hm82b04.g1 WGS-SbicolorF (JM107 adap... 106 1e-043
gb|CN142308.1|CN142308 WOUND1_9_D10.b1_A002 Wounded leaves ... 166 2e-040
gb|CX621918.1|CX621918 GABR1_61_A04.b2_A002 GA- or brassino... 166 2e-040
gb|CX621919.1|CX621919 GABR1_61_A05.b2_A002 GA- or brassino... 166 2e-040
gb|CN135808.1|CN135808 OX1_39_C06.b1_A002 Oxidatively-stres... 165 8e-040
gb|CF489936.1|CF489936 POL1_61_B06.g1_A002 Pollen Sorghum b... 160 2e-038
gb|CD227433.1|CD227433 CCC1_51_D09.b1_A007 Callus culture/c... 155 5e-037
gb|CN127600.1|CN127600 RHOH1_24_A08.b1_A002 Acid- and alkal... 155 6e-037
gb|BI351339.1|BI351339 IP1_70_C11.b1_A002 Immature pannicle... 154 1e-036
gb|CF486159.1|CF486159 POL1_36_C08.b1_A002 Pollen Sorghum b... 150 2e-035
gb|CW032150.1|CW032150 104_261_10501217_114_30363 Sorghum m... 149 5e-035
gb|CW280756.1|CW280756 104_756_11407799_116_35449_094 Sorgh... 149 5e-035
gb|CN127125.1|CN127125 RHOH1_21_E05.b1_A002 Acid- and alkal... 148 1e-034
gb|CX609713.1|CX609713 ANR1_14_G03.b1_A002 Anaerobic roots ... 144 1e-033
gb|CN135891.1|CN135891 OX1_39_C06.g1_A002 Oxidatively-stres... 143 2e-033
gb|CN142381.1|CN142381 WOUND1_9_D10.g1_A002 Wounded leaves ... 143 3e-033
gb|CN127212.1|CN127212 RHOH1_21_E05.g3_A002 Acid- and alkal... 137 2e-031
gb|BG463532.1|BG463532 EM1_49_F10.g1_A002 Embryo 1 (EM1) So... 136 4e-031
gb|CW087177.1|CW087177 104_431_10947456_116_33023_088 Sorgh... 100 6e-028
gb|BE593911.1|BE593911 WS1_103_H04.g1_A002 Water-stressed 1... 121 1e-026
gb|BM328492.1|BM328492 PIC1_29_H04.g1_A002 Pathogen-infecte... 121 1e-026
gb|BG559753.1|BG559753 RHIZ2_73_C03.g1_A003 Rhizome2 (RHIZ2... 114 2e-024
gb|CD235416.1|CD235416 SS1_29_F07.b1_A012 Salt-stressed see... 114 2e-024
gb|CW087176.1|CW087176 104_431_10947456_114_33027_088 Sorgh... 100 2e-024
gb|CN127681.1|CN127681 RHOH1_24_A08.g3_A002 Acid- and alkal... 109 4e-023
gb|BG464569.1|BG464569 EM1_71_D07.g1_A002 Embryo 1 (EM1) So... 109 5e-023
gb|CW407060.1|CW407060 fsbb001f100f21f0 Sorghum methylation... 106 4e-022
gb|CW342011.1|CW342011 104_843_11486637_116_36161_085 Sorgh... 103 3e-021
gb|CW342013.1|CW342013 104_843_11486638_116_36164_085 Sorgh... 103 3e-021
gb|CW342014.1|CW342014 104_843_11486638_148_36163_085 Sorgh... 103 3e-021
gb|CD226192.1|CD226192 CCC1_44_B06.b1_A007 Callus culture/c... 102 6e-021
gb|CN132247.1|CN132247 OX1_5_B02.b1_A002 Oxidatively-stress... 102 6e-021
>gb|CF489853.1|CF489853 POL1_61_B06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B06_A002 3', mRNA sequence
Length = 653
Score = 391 bits (848), Expect(2) = e-112
Identities = 156/164 (95%), Positives = 157/164 (95%)
Frame = +2 / +1
Query: 8 HEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDF 187
HEFTAPIGFAAPYAHWAEVLILGIPSFVGPAI PGHMITFWLWIILRQVEAIETHSGFDF
Sbjct: 1 HEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIAPGHMITFWLWIILRQVEAIETHSGFDF 180
Query: 188 PFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLKD 367
PFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTD+GYRFHK LAKLKD
Sbjct: 181 PFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDRGYRFHKASLAKLKD 360
Query: 368 LGHNDGEKGDGSGPSYVKLD*IARYSAS*VFLWSSTSLWHFEMG 499
LG NDGEKGDGSG SYVKLD*IARYSAS*VFL STSLWHFEMG
Sbjct: 361 LGQNDGEKGDGSGLSYVKLD*IARYSAS*VFL*PSTSLWHFEMG 492
Score = 357 bits (774), Expect(2) = e-103
Identities = 147/175 (84%), Positives = 158/175 (90%)
Frame = -1 / -3
Query: 532 ENTRDQPNSAISHFEMPQ*SR*P*KHSRCTISCNLIQFHIAGSAAVSFLAIIMPQILQLC 353
+++R P ISHF+MPQ*S *KHSRCT+SCNLIQFHIA S A+SFLAII+PQILQLC
Sbjct: 525 KHSRCSPARYISHFKMPQ*SGWS*KHSRCTVSCNLIQFHIAESTAISFLAIILPQILQLC 346
Query: 352 *VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAA 173
* CFVESVT +S I*VITVSENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKA
Sbjct: 345 *GCFVESVTSISPI*VITVSENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAT 166
Query: 172 MCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSELM 8
MCLDSLHLTEYNPEPECDHVAW+NG PDEGGDA+Y+HLSPVCIWSCES WR ELM
Sbjct: 165 MCLDSLHLTEYNPEPECDHVAWSNGRPDEGGDAKYEHLSPVCIWSCESDWRGELM 1
Score = 346 bits (749), Expect(2) = 6e-097
Identities = 145/164 (88%), Positives = 151/164 (92%)
Frame = -3 / -2
Query: 500 IPFRNATVKSMTIETLKMHYILQSNPVSHSWVRCRLLSRHHYAPDPSALLGMFCGICNLC 321
+PF+NATVK M IETLKMH ILQSNP+SHS V C LLSRHH+APDPSALLGM CGICNL
Sbjct: 493 LPFQNATVKWMVIETLKMHCILQSNPISHS*VHCHLLSRHHFAPDPSALLGMLCGICNLY 314
Query: 320 QCHISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQSRYVSR*PPPDGV 141
Q HISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQS YVSR*PPPDGV
Sbjct: 313 QSHISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQSHYVSR*PPPDGV 134
Query: 140 *SRARM*SCGLEQWLARRRRGCRVSAPQPSVHMELRILLAQ*TH 9
*SRARM*SCGLEQW ARRRRGC+V APQPSVHMELRI LA+*TH
Sbjct: 133 *SRARM*SCGLEQWPARRRRGCQV*APQPSVHMELRIRLAR*TH 2
Score = 335 bits (726), Expect(2) = 5e-095
Identities = 146/169 (86%), Positives = 149/169 (88%)
Frame = +3 / +2
Query: 9 MSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHIAALIS 188
MSS RQ DSQLHMHTGLRC Y ASPPSSG+PL QAT*SHSGSGLYSVRWRLSRHI ALIS
Sbjct: 2 MSSPRQSDSQLHMHTGLRCSYLASPPSSGRPLLQAT*SHSGSGLYSVRWRLSRHIVALIS 181
Query: 189 HSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMALTKVTDSTKHT*QS*RI 368
HSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYM L +VTDSTKH *QS*RI
Sbjct: 182 HSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMGLIEVTDSTKHP*QS*RI 361
Query: 369 WGIMMARKETAADPAM*NWIRLQDIVHLECFYGHRLHCGISKWDIAELG 515
WG MMARKE A D AM*NWIRLQD VHLECFY H LHCGI KW+I G
Sbjct: 362 WGKMMARKEMAVDSAM*NWIRLQDTVHLECFYDHPLHCGILKWEIYRAG 508
Score = 258 bits (557), Expect(2) = 1e-078
Identities = 111/115 (96%), Positives = 112/115 (97%)
Frame = -2 / -1
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
AR LWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP
Sbjct: 347 ARDALWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 168
Query: 174 LCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
LCVSIAST*RSIIQSQNVIMWPG MAGPTKEGMPS+STSAQCAYGAANPIGAVNS
Sbjct: 167 LCVSIAST*RSIIQSQNVIMWPGAMAGPTKEGMPSMSTSAQCAYGAANPIGAVNS 3
Score = 258 bits (557), Expect(2) = 7e-080
Identities = 109/122 (89%), Positives = 110/122 (90%)
Frame = +1 / +3
Query: 10 *VHCANRIRSSICTLG*GADTRHPLLRRASHCSRPHDHILALDYTPSGGGYRDT*RL*FP 189
*VH ANRIRSSICTLG*GA T HPLLRRA HCSRPHDHILALDYTPSGGGYRDT* L*FP
Sbjct: 3 *VHRANRIRSSICTLG*GAHTWHPLLRRAGHCSRPHDHILALDYTPSGGGYRDT*WL*FP 182
Query: 190 IHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFHXXXXXIWH*QRLQIPQNIPSKAEGS 369
IHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFH IW * RLQIPQ+IPSKAEGS
Sbjct: 183 IHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFHLL*LLIWD**RLQIPQSIPSKAEGS 362
Query: 370 GA 375
GA
Sbjct: 363 GA 368
Score = 61.1 bits (127), Expect(2) = 7e-080
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +1 / +3
Query: 406 TQLCETGLDCKI*CILSVSMVIDFTVAFRNG 498
TQLCE GLDCKI CILSVSM I FTVAF NG
Sbjct: 399 TQLCEIGLDCKIQCILSVSMTIHFTVAF*NG 491
Score = 57.0 bits (118), Expect(2) = 1e-078
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = -2 / -1
Query: 498 PISKCHSEVDDHRNTQDALYLAI* 427
PISKCHSEVD HRNTQDALYLAI*
Sbjct: 491 PISKCHSEVDGHRNTQDALYLAI* 420
Score = 40.9 bits (83), Expect(2) = e-103
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = -1 / -3
Query: 649 YS*ELRCYSSAYKFHKIS*TLEKKEK 572
Y *EL CYSSAYKFH IS TL K+ +
Sbjct: 612 YF*ELCCYSSAYKFHGISQTLGKRRQ 535
Score = 34.5 bits (69), Expect(2) = e-112
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3 / +2
Query: 591 VYEILWNLYADE*QRNSHE* 650
V EI WNLYADE*Q NS +*
Sbjct: 554 VCEIPWNLYADE*QHNSQK* 613
Score = 34.1 bits (68), Expect(2) = 5e-095
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2 / +1
Query: 593 L*NFMELVR*RITTQLSRI 649
L*N MELVR*RITTQLS +
Sbjct: 556 L*NSMELVR*RITTQLSEV 612
Score = 29.9 bits (59), Expect(2) = 6e-097
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -1
Query: 642 ESCVVIRQRTSSI 604
ESCVVIRQRTSS+
Sbjct: 605 ESCVVIRQRTSSM 567
>gb|CN135994.1|CN135994 OX1_40_D12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_D12_A002 3', mRNA sequence
Length = 772
Score = 271 bits (587), Expect(2) = 9e-076
Identities = 108/115 (93%), Positives = 110/115 (95%)
Frame = +2 / +1
Query: 155 EAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
EAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVF+YCDYLYGTD+GYR
Sbjct: 1 EAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFSYCDYLYGTDRGYR 180
Query: 335 FHKTYLAKLKDLGHNDGEKGDGSGPSYVKLD*IARYSAS*VFLWSSTSLWHFEMG 499
FHK YLAKLKDLG NDGEKGDGSG SYVKLD*IARYSAS*VFL STSLWHFEMG
Sbjct: 181 FHKAYLAKLKDLGQNDGEKGDGSGLSYVKLD*IARYSAS*VFL*PSTSLWHFEMG 345
Score = 243 bits (525), Expect(2) = 9e-069
Identities = 100/115 (86%), Positives = 104/115 (90%)
Frame = -3 / -1
Query: 500 IPFRNATVKSMTIETLKMHYILQSNPVSHSWVRCRLLSRHHYAPDPSALLGMFCGICNLC 321
+PF+NATVK M IETLKMH ILQSNP+SHS V C LLSRHH+APDPSALLGM CGICNL
Sbjct: 346 LPFQNATVKWMVIETLKMHCILQSNPISHS*VHCHLLSRHHFAPDPSALLGMLCGICNLY 167
Query: 320 QCHISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQSRYVSR*P 156
Q HISNHSK KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQS YVSR*P
Sbjct: 166 QSHISNHSKRKQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGNQSHYVSR*P 2
Score = 239 bits (516), Expect(2) = 9e-066
Identities = 104/120 (86%), Positives = 106/120 (88%)
Frame = +3 / +2
Query: 156 RLSRHIAALISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMALTKVTD 335
RLSRHI ALISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYM L +VTD
Sbjct: 2 RLSRHIVALISHSPRQSIFHSMEEQNTMTIIIM*EARAKAILLLFSLTVITYMGLIEVTD 181
Query: 336 STKHT*QS*RIWGIMMARKETAADPAM*NWIRLQDIVHLECFYGHRLHCGISKWDIAELG 515
STKHT*QS*RIWG MMARKE A D AM*NWIRLQD VHLECFY H LHCGI KW+I G
Sbjct: 182 STKHT*QS*RIWGKMMARKEMAVDSAM*NWIRLQDTVHLECFYDHPLHCGILKWEIYRAG 361
Score = 238 bits (515), Expect(2) = 8e-065
Identities = 104/126 (82%), Positives = 112/126 (88%)
Frame = -1 / -2
Query: 532 ENTRDQPNSAISHFEMPQ*SR*P*KHSRCTISCNLIQFHIAGSAAVSFLAIIMPQILQLC 353
+++R P ISHF+MPQ*S *KHSRCT+SCNLIQFHIA S A+SFLAII+PQILQLC
Sbjct: 378 KHSRCSPARYISHFKMPQ*SGWS*KHSRCTVSCNLIQFHIAESTAISFLAIILPQILQLC 199
Query: 352 *VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAA 173
*VCFVESVT +S I*VITV ENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKA
Sbjct: 198 *VCFVESVTSISPI*VITVRENRSKIALALASYIMMIVMVFCSSIEWNILCRGEWEIKAT 19
Query: 172 MCLDSL 155
MCLDSL
Sbjct: 18 MCLDSL 1
Score = 149 bits (320), Expect(2) = 3e-046
Identities = 64/66 (96%), Positives = 64/66 (96%)
Frame = -2 / -3
Query: 354 ARYVLWNL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 175
ARY LWNL*PLSVPYK*SQ* KTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP
Sbjct: 200 ARYALWNL*PLSVPYK*SQ*EKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKP 21
Query: 174 LCVSIA 157
LCVSIA
Sbjct: 20 LCVSIA 3
Score = 147 bits (315), Expect(2) = 1e-046
Identities = 63/73 (86%), Positives = 64/73 (87%)
Frame = +1 / +3
Query: 157 GYRDT*RL*FPIHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFHXXXXXIWH*QRLQI 336
GYRDT* L*FPIHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCF IW * RLQI
Sbjct: 3 GYRDT*WL*FPIHPDKVYSILWRSRIP*LSSLCRRPEPKQFCFCFLLL*LLIWD**RLQI 182
Query: 337 PQNIPSKAEGSGA 375
PQ+IPSKAEGSGA
Sbjct: 183 PQSIPSKAEGSGA 221
Score = 61.1 bits (127), Expect(2) = 1e-046
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +1 / +3
Query: 406 TQLCETGLDCKI*CILSVSMVIDFTVAFRNG 498
TQLCE GLDCKI CILSVSM I FTVAF NG
Sbjct: 252 TQLCEIGLDCKIQCILSVSMTIHFTVAF*NG 344
Score = 57.0 bits (118), Expect(2) = 3e-046
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = -2 / -3
Query: 498 PISKCHSEVDDHRNTQDALYLAI* 427
PISKCHSEVD HRNTQDALYLAI*
Sbjct: 344 PISKCHSEVDGHRNTQDALYLAI* 273
Score = 38.6 bits (78), Expect(2) = 9e-069
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -1 / -2
Query: 643 *ELRCYSSAYKFHKIS*TLEKKEK 572
*EL CYSSAYKFH IS TL K+ +
Sbjct: 459 *ELCCYSSAYKFHGISQTLGKRRQ 388
Score = 33.6 bits (67), Expect(2) = 9e-076
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3 / +2
Query: 591 VYEILWNLYADE*QRNS 641
V EI WNLYADE*Q NS
Sbjct: 407 VCEIPWNLYADE*QHNS 457
Score = 32.7 bits (65), Expect(2) = 9e-066
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2 / +1
Query: 593 L*NFMELVR*RITTQLS 643
L*N MELVR*RITTQLS
Sbjct: 409 L*NSMELVR*RITTQLS 459
Score = 29.9 bits (59), Expect(2) = 8e-065
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -3
Query: 642 ESCVVIRQRTSSI 604
ESCVVIRQRTSS+
Sbjct: 458 ESCVVIRQRTSSM 420
>gb|CW407061.1|CW407061 fsbb001f100f21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100f21, DNA
sequence
Length = 808
Score = 106 bits (226), Expect(2) = 7e-046
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = +2 / +3
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+ FPF+P++ IPFYGGA YHDYHHY GG+SQSNFA +FTYCDY+Y TDK
Sbjct: 444 YHFPFSPSRLIPFYGGAAYHDYHHYAGGRSQSNFAPLFTYCDYIYRTDK 590
Score = 99.1 bits (210), Expect(2) = 7e-046
Identities = 35/59 (59%), Positives = 43/59 (72%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHHEFTAP GFA Y+HWAE ++L IP+ GP +VP H+ T WLW +R +E I THSG
Sbjct: 156 VHHEFTAPTGFAMSYSHWAENVVLSIPALAGPVLVPCHVTTQWLWFSIRLIEGINTHSG 332
Score = 70.3 bits (147), Expect(2) = 3e-024
Identities = 29/48 (60%), Positives = 36/48 (75%)
Frame = -3 / -2
Query: 326 LCQCHISNHSK*KQKQNCFGSGLLHNDDSHGILLLHRMEYTLSG*MGN 183
LC +I N S+*K++Q+CF GLL +DDSHG+L LHRME G*MGN
Sbjct: 591 LCLSYIYNRSR*KEEQSCFDYGLLRSDDSHGMLPLHRMESAWKG*MGN 448
Score = 62.5 bits (130), Expect(2) = 3e-024
Identities = 28/59 (47%), Positives = 33/59 (55%)
Frame = -2 / -1
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
PLCV + S R S V+ W GT GP K G+ + SAQ Y A P+GAVNSW T
Sbjct: 331 PLCVLMPSIRRMENHSHCVVTWHGTSTGPAKAGIERTTFSAQWLYDMAKPVGAVNSWWT 155
>gb|CW275770.1|CW275770 104_749_11405136_148_35393_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405136, DNA
sequence
Length = 683
Score = 106 bits (226), Expect(2) = 1e-043
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +2 / +2
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
++FPF PTK IP++GGAE+HDYHH VG QS SNF+S+FTYCDY+YGTDK
Sbjct: 419 YNFPFDPTKLIPYHGGAEFHDYHHLVGRQSNSNFSSIFTYCDYIYGTDK 565
Score = 91.8 bits (194), Expect(2) = 1e-043
Identities = 31/59 (52%), Positives = 39/59 (66%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHH+ TAP FA Y+HWAEV + G+P+F GP I P H++T WLW + EAI H G
Sbjct: 162 VHHQVTAPTSFATSYSHWAEVAVFGVPTFAGPTIAPCHVVTHWLWFAVSIFEAISAHCG 338
>gb|BZ352082.1|BZ352082 hm82b04.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hm82b04 5', DNA sequence
Length = 647
Score = 106 bits (226), Expect(2) = 1e-043
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +2 / -1
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
++FPF PTK IP++GGAE+HDYHH VG QS SNF+S+FTYCDY+YGTDK
Sbjct: 188 YNFPFDPTKLIPYHGGAEFHDYHHLVGRQSNSNFSSIFTYCDYIYGTDK 42
Score = 91.8 bits (194), Expect(2) = 1e-043
Identities = 31/59 (52%), Positives = 39/59 (66%)
Frame = +2 / -2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHH+ TAP FA Y+HWAEV + G+P+F GP I P H++T WLW + EAI H G
Sbjct: 445 VHHQVTAPTSFATSYSHWAEVAVFGVPTFAGPTIAPCHVVTHWLWFAVSIFEAISAHCG 269
>gb|CN142308.1|CN142308 WOUND1_9_D10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_9_D10_A002 3', mRNA sequence
Length = 730
Score = 166 bits (358), Expect = 2e-040
Identities = 58/115 (50%), Positives = 80/115 (69%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 125 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGY 304
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++P+ ++P YGG+++HDYHH V N+AS F Y D+L+GTDK YR KT
Sbjct: 305 HFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKT 469
>gb|CX621918.1|CX621918 GABR1_61_A04.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_A04_A002 3', mRNA sequence
Length = 779
Score = 166 bits (358), Expect = 2e-040
Identities = 58/115 (50%), Positives = 80/115 (69%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 187 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGY 366
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++P+ ++P YGG+++HDYHH V N+AS F Y D+L+GTDK YR KT
Sbjct: 367 HFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKT 531
>gb|CX621919.1|CX621919 GABR1_61_A05.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_A05_A002 3', mRNA sequence
Length = 681
Score = 166 bits (358), Expect = 2e-040
Identities = 58/115 (50%), Positives = 80/115 (69%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 80 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGY 259
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++P+ ++P YGG+++HDYHH V N+AS F Y D+L+GTDK YR KT
Sbjct: 260 HFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKT 424
>gb|CN135808.1|CN135808 OX1_39_C06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_C06_A002 3', mRNA sequence
Length = 795
Score = 165 bits (354), Expect = 8e-040
Identities = 57/114 (50%), Positives = 79/114 (69%)
Frame = +2 / +2
Query: 5 HHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFD 184
HHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 2 HHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGYH 181
Query: 185 FPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
FP++P+ ++P YGG+++HDYHH V N+AS F Y D+L+GTDK YR KT
Sbjct: 182 FPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKT 343
>gb|CF489936.1|CF489936 POL1_61_B06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B06_A002 5', mRNA sequence
Length = 741
Score = 160 bits (344), Expect = 2e-038
Identities = 62/63 (98%), Positives = 62/63 (98%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAI PGHMITFWLWIILRQVEAIETHSGF
Sbjct: 553 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIAPGHMITFWLWIILRQVEAIETHSGF 732
Query: 182 DFP 190
DFP
Sbjct: 733 DFP 741
Score = 152 bits (327), Expect = 4e-036
Identities = 55/63 (87%), Positives = 59/63 (93%)
Frame = -1 / -1
Query: 190 WEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSEL 11
WEIKA MCLDSLHLTEYNPEPECDHVAW+NG PDEGGDA+Y+HLSPVCIWSCES WR EL
Sbjct: 741 WEIKATMCLDSLHLTEYNPEPECDHVAWSNGRPDEGGDAKYEHLSPVCIWSCESDWRGEL 562
Query: 10 MVN 2
MV+
Sbjct: 561 MVD 553
Score = 144 bits (309), Expect = 1e-033
Identities = 60/63 (95%), Positives = 61/63 (96%)
Frame = -2 / -2
Query: 189 GKSKPLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNS 10
GKSKPLCVSIAST*RSIIQSQNVIMWPG MAGPTKEGMPS+STSAQCAYGAANPIGAVNS
Sbjct: 740 GKSKPLCVSIAST*RSIIQSQNVIMWPGAMAGPTKEGMPSMSTSAQCAYGAANPIGAVNS 561
Query: 9 W*T 1
W T
Sbjct: 560 WWT 552
Score = 132 bits (283), Expect = 5e-030
Identities = 56/61 (91%), Positives = 56/61 (91%)
Frame = +1 / +3
Query: 7 P*VHCANRIRSSICTLG*GADTRHPLLRRASHCSRPHDHILALDYTPSGGGYRDT*RL*F 186
P*VH ANRIRSSICTLG*GA T HPLLRRA HCSRPHDHILALDYTPSGGGYRDT* L*F
Sbjct: 558 P*VHRANRIRSSICTLG*GAHTWHPLLRRAGHCSRPHDHILALDYTPSGGGYRDT*WL*F 737
Query: 187 P 189
P
Sbjct: 738 P 740
Score = 128 bits (274), Expect = 9e-029
Identities = 55/61 (90%), Positives = 57/61 (93%)
Frame = -3 / -3
Query: 188 GNQSRYVSR*PPPDGV*SRARM*SCGLEQWLARRRRGCRVSAPQPSVHMELRILLAQ*TH 9
GNQS YVSR*PPPDGV*SRARM*SCGLEQW ARRRRGC+V APQPSVHMELRI LA+*TH
Sbjct: 739 GNQSHYVSR*PPPDGV*SRARM*SCGLEQWPARRRRGCQV*APQPSVHMELRIRLAR*TH 560
Query: 8 G 6
G
Sbjct: 559 G 557
Score = 125 bits (267), Expect = 8e-028
Identities = 54/61 (88%), Positives = 55/61 (90%)
Frame = +3 / +2
Query: 6 TMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHIAALI 185
TMSS RQ DSQLHMHTGLRC Y ASPPSSG+PL QAT*SHSGSGLYSVRWRLSRHI ALI
Sbjct: 557 TMSSPRQSDSQLHMHTGLRCSYLASPPSSGRPLLQAT*SHSGSGLYSVRWRLSRHIVALI 736
Query: 186 S 188
S
Sbjct: 737 S 739
>gb|CD227433.1|CD227433 CCC1_51_D09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_51_D09_A007 3', mRNA sequence
Length = 597
Score = 155 bits (334), Expect = 5e-037
Identities = 55/115 (47%), Positives = 77/115 (66%)
Frame = +2 / +3
Query: 14 FTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPF 193
+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+ FP+
Sbjct: 3 YATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGYHFPW 182
Query: 194 TPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAK 358
+P+ ++P YGG+++HDYHH V N+AS F Y D+L+GTDK YR KT K
Sbjct: 183 SPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKTIEGK 347
>gb|CN127600.1|CN127600 RHOH1_24_A08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_A08_A002 3', mRNA sequence
Length = 788
Score = 155 bits (333), Expect = 6e-037
Identities = 54/111 (48%), Positives = 76/111 (68%)
Frame = +2 / +3
Query: 14 FTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPF 193
+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+ FP+
Sbjct: 3 YATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGYHFPW 182
Query: 194 TPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
+P+ ++P YGG+++HDYHH V N+AS F Y D+L+GTDK YR KT
Sbjct: 183 SPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKT 335
>gb|BI351339.1|BI351339 IP1_70_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 526
Score = 154 bits (331), Expect = 1e-036
Identities = 52/106 (49%), Positives = 74/106 (69%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 207 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGY 386
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGT 319
FP++P+ ++P YGG+++HDYHH V N+AS F Y D+L+GT
Sbjct: 387 HFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGT 524
>gb|CF486159.1|CF486159 POL1_36_C08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_C08_A002 3', mRNA sequence
Length = 688
Score = 150 bits (323), Expect = 2e-035
Identities = 53/106 (50%), Positives = 74/106 (69%)
Frame = +2 / +3
Query: 29 GFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPFTPTKY 208
G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+ FP++P+ +
Sbjct: 6 GLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGYHFPWSPSNF 185
Query: 209 IPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
+P YGG+++HDYHH V N+AS F Y D+L+GTDK YR KT
Sbjct: 186 LPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKT 323
>gb|CW032150.1|CW032150 104_261_10501217_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501217, DNA
sequence
Length = 406
Score = 149 bits (319), Expect = 5e-035
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAI PGHMITFWLWIILRQVEAIETHSG
Sbjct: 79 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIAPGHMITFWLWIILRQVEAIETHSG 255
Score = 141 bits (302), Expect = 1e-032
Identities = 51/57 (89%), Positives = 54/57 (94%)
Frame = -1 / -2
Query: 172 MCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
MCLDSLHLTEYNPEPECDHVAW+NG PDEGGDAEY+HLSPVCIWSCES WR ELMV+
Sbjct: 249 MCLDSLHLTEYNPEPECDHVAWSNGRPDEGGDAEYEHLSPVCIWSCESDWRGELMVD 79
Score = 135 bits (289), Expect = 8e-031
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = -2 / -3
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
PLCVSIAST*RSIIQSQNVIMWPG MAGPTKEGMPS+STSAQCAYGAANPIGAVNSW T
Sbjct: 254 PLCVSIAST*RSIIQSQNVIMWPGAMAGPTKEGMPSMSTSAQCAYGAANPIGAVNSWWT 78
Score = 129 bits (276), Expect = 5e-029
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = +1 / +3
Query: 7 P*VHCANRIRSSICTLG*GADTRHPLLRRASHCSRPHDHILALDYTPSGGGYRDT* 174
P*VH ANRIRSSICTLG*GA TRHPLLRRA HCSRPHDHILALDYTPSGGGYRDT*
Sbjct: 84 P*VHRANRIRSSICTLG*GAHTRHPLLRRAGHCSRPHDHILALDYTPSGGGYRDT* 251
Score = 121 bits (258), Expect = 1e-026
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = -3 / -1
Query: 179 SRYVSR*PPPDGV*SRARM*SCGLEQWLARRRRGCRVSAPQPSVHMELRILLAQ*THG 6
+ YVSR*PPPDGV*SRARM*SCGLEQW ARRRRGCRV APQPSVHMELRI LA+*THG
Sbjct: 256 THYVSR*PPPDGV*SRARM*SCGLEQWPARRRRGCRV*APQPSVHMELRIRLAR*THG 83
Score = 120 bits (257), Expect = 2e-026
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +3 / +2
Query: 6 TMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHI 173
TMSS RQ DSQLHMHTGLRC YSASPPSSG+PL QAT*SHSGSGLYSVRWRLSRHI
Sbjct: 83 TMSSPRQSDSQLHMHTGLRCSYSASPPSSGRPLLQAT*SHSGSGLYSVRWRLSRHI 250
>gb|CW280756.1|CW280756 104_756_11407799_116_35449_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407799, DNA
sequence
Length = 350
Score = 149 bits (319), Expect = 5e-035
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +2 / -2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSG 178
VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAI PGHMITFWLWIILRQVEAIETHSG
Sbjct: 283 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIAPGHMITFWLWIILRQVEAIETHSG 107
Score = 141 bits (302), Expect = 1e-032
Identities = 51/57 (89%), Positives = 54/57 (94%)
Frame = -1 / +2
Query: 172 MCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCESYWRSELMVN 2
MCLDSLHLTEYNPEPECDHVAW+NG PDEGGDAEY+HLSPVCIWSCES WR ELMV+
Sbjct: 113 MCLDSLHLTEYNPEPECDHVAWSNGRPDEGGDAEYEHLSPVCIWSCESDWRGELMVD 283
Score = 135 bits (289), Expect = 8e-031
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = -2 / +3
Query: 177 PLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
PLCVSIAST*RSIIQSQNVIMWPG MAGPTKEGMPS+STSAQCAYGAANPIGAVNSW T
Sbjct: 108 PLCVSIAST*RSIIQSQNVIMWPGAMAGPTKEGMPSMSTSAQCAYGAANPIGAVNSWWT 284
Score = 129 bits (276), Expect = 5e-029
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = +1 / -1
Query: 7 P*VHCANRIRSSICTLG*GADTRHPLLRRASHCSRPHDHILALDYTPSGGGYRDT* 174
P*VH ANRIRSSICTLG*GA TRHPLLRRA HCSRPHDHILALDYTPSGGGYRDT*
Sbjct: 278 P*VHRANRIRSSICTLG*GAHTRHPLLRRAGHCSRPHDHILALDYTPSGGGYRDT* 111
Score = 121 bits (258), Expect = 1e-026
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = -3 / +1
Query: 179 SRYVSR*PPPDGV*SRARM*SCGLEQWLARRRRGCRVSAPQPSVHMELRILLAQ*THG 6
+ YVSR*PPPDGV*SRARM*SCGLEQW ARRRRGCRV APQPSVHMELRI LA+*THG
Sbjct: 106 THYVSR*PPPDGV*SRARM*SCGLEQWPARRRRGCRV*APQPSVHMELRIRLAR*THG 279
Score = 120 bits (257), Expect = 2e-026
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +3 / -3
Query: 6 TMSSLRQ*DSQLHMHTGLRC*YSASPPSSGQPLFQAT*SHSGSGLYSVRWRLSRHI 173
TMSS RQ DSQLHMHTGLRC YSASPPSSG+PL QAT*SHSGSGLYSVRWRLSRHI
Sbjct: 279 TMSSPRQSDSQLHMHTGLRCSYSASPPSSGRPLLQAT*SHSGSGLYSVRWRLSRHI 112
>gb|CN127125.1|CN127125 RHOH1_21_E05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_E05_A002 3', mRNA sequence
Length = 779
Score = 148 bits (317), Expect = 1e-034
Identities = 52/101 (51%), Positives = 72/101 (71%)
Frame = +2 / +2
Query: 44 YAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYG 223
YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+ FP++P+ ++P YG
Sbjct: 2 YAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGYHFPWSPSNFLPLYG 181
Query: 224 GAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
G+++HDYHH V N+AS F Y D+L+GTDK YR KT
Sbjct: 182 GSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKT 304
>gb|CX609713.1|CX609713 ANR1_14_G03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_G03_A002 3', mRNA sequence
Length = 776
Score = 144 bits (310), Expect = 1e-033
Identities = 51/100 (51%), Positives = 71/100 (71%)
Frame = +2 / +2
Query: 47 AHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYGG 226
AH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+ FP++P+ ++P YGG
Sbjct: 2 AHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGYHFPWSPSNFLPLYGG 181
Query: 227 AEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKT 346
+++HDYHH V N+AS F Y D+L+GTDK YR KT
Sbjct: 182 SDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRKAKT 301
>gb|CN135891.1|CN135891 OX1_39_C06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_C06_A002 5', mRNA sequence
Length = 831
Score = 143 bits (307), Expect = 2e-033
Identities = 48/99 (48%), Positives = 68/99 (68%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 530 VHHEYATPFGLTSEYAHPAEILFLGFATMVGPALTGPHLFTLWLWMVLRILETVEAHSGY 709
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTY 298
FP++P+ ++P YGG+++HDYHH V N+AS F Y
Sbjct: 710 HFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVY 826
>gb|CN142381.1|CN142381 WOUND1_9_D10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_9_D10_A002 5', mRNA sequence
Length = 731
Score = 143 bits (306), Expect = 3e-033
Identities = 48/99 (48%), Positives = 68/99 (68%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 430 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGY 609
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTY 298
FP++P+ ++P YGG+++HDYHH V N+AS F Y
Sbjct: 610 HFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVY 726
>gb|CN127212.1|CN127212 RHOH1_21_E05.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_E05_A002 5', mRNA sequence
Length = 774
Score = 137 bits (293), Expect = 2e-031
Identities = 46/95 (48%), Positives = 66/95 (69%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 488 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGY 667
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFAS 286
FP++P+ ++P YGG+++HDYHH V N+AS
Sbjct: 668 HFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYAS 772
>gb|BG463532.1|BG463532 EM1_49_F10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 565
Score = 136 bits (291), Expect = 4e-031
Identities = 47/70 (67%), Positives = 60/70 (85%)
Frame = +2 / +3
Query: 155 EAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
EAI H G++FPF PTK IP++GGAE+HDYHH VG QS SNF+S+FTYCDY+YGTDKGY+
Sbjct: 12 EAISAHCGYNFPFDPTKLIPYHGGAEFHDYHHLVGRQSNSNFSSIFTYCDYIYGTDKGYK 191
Query: 335 FHKTYLAKLK 364
++K +AK+K
Sbjct: 192 YYKANVAKVK 221
>gb|CW087177.1|CW087177 104_431_10947456_116_33023_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947456, DNA
sequence
Length = 726
Score = 100 bits (214), Expect(3) = 6e-028
Identities = 33/71 (46%), Positives = 49/71 (69%)
Frame = +2 / -2
Query: 14 FTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPF 193
+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+ FP+
Sbjct: 563 YATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGYHFPW 384
Query: 194 TPTKYIPFYGG 226
+P+ ++P YGG
Sbjct: 383 SPSNFLPLYGG 351
Score = 36.8 bits (74), Expect(3) = 6e-028
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2 / -1
Query: 227 AEYHDYHHYVGGQSQSNFASVFTYCDY 307
+++HDYHH V N+AS F Y D+
Sbjct: 240 SDFHDYHHRVLYTKSGNYASTFVYMDW 160
Score = 25.4 bits (49), Expect(3) = 6e-028
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2 / -3
Query: 299 CDYLYGTDKGYRFHKT 346
C L+GTDK YR KT
Sbjct: 82 CFRLFGTDKDYRKAKT 35
>gb|BE593911.1|BE593911 WS1_103_H04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 637
Score = 121 bits (258), Expect = 1e-026
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +2 / +2
Query: 113 HMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVF 292
H+ T WLW++LR +E +E HSG+ FP++P+ ++P YGG+++HDYHH V N+AS F
Sbjct: 11 HLFTLWLWMVLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTF 190
Query: 293 TYCDYLYGTDKGYRFHKT 346
Y D+L+GTDK YR KT
Sbjct: 191 VYMDWLFGTDKDYRKAKT 244
>gb|BM328492.1|BM328492 PIC1_29_H04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 504
Score = 121 bits (258), Expect = 1e-026
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +2 / +2
Query: 113 HMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVF 292
H+ T WLW++LR +E +E HSG+ FP++P+ ++P YGG+++HDYHH V N+AS F
Sbjct: 8 HLFTLWLWMVLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTF 187
Query: 293 TYCDYLYGTDKGYRFHKT 346
Y D+L+GTDK YR KT
Sbjct: 188 VYMDWLFGTDKDYRKAKT 241
>gb|BG559753.1|BG559753 RHIZ2_73_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 485
Score = 114 bits (243), Expect = 2e-024
Identities = 38/73 (52%), Positives = 54/73 (73%)
Frame = +2 / +2
Query: 128 WLWIILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY 307
WLW++LR +E +E HSG+ FP++P+ ++P YGG+++HDYHH V N+AS F Y D+
Sbjct: 2 WLWMVLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 181
Query: 308 LYGTDKGYRFHKT 346
L+GTDK YR KT
Sbjct: 182 LFGTDKDYRKAKT 220
>gb|CD235416.1|CD235416 SS1_29_F07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_29_F07_A012 3', mRNA sequence
Length = 669
Score = 114 bits (243), Expect = 2e-024
Identities = 38/73 (52%), Positives = 54/73 (73%)
Frame = +2 / +1
Query: 128 WLWIILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDY 307
WLW++LR +E +E HSG+ FP++P+ ++P YGG+++HDYHH V N+AS F Y D+
Sbjct: 1 WLWMVLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 180
Query: 308 LYGTDKGYRFHKT 346
L+GTDK YR KT
Sbjct: 181 LFGTDKDYRKAKT 219
>gb|CW087176.1|CW087176 104_431_10947456_114_33027_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947456, DNA
sequence
Length = 703
Score = 100 bits (214), Expect(2) = 2e-024
Identities = 33/71 (46%), Positives = 49/71 (69%)
Frame = +2 / +1
Query: 14 FTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPF 193
+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+ FP+
Sbjct: 289 YATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGYHFPW 468
Query: 194 TPTKYIPFYGG 226
+P+ ++P YGG
Sbjct: 469 SPSNFLPLYGG 501
Score = 32.7 bits (65), Expect(2) = 2e-024
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2 / +3
Query: 227 AEYHDYHHYVGGQSQSNFASVFTYCDY 307
+++HDYHH V ++AS F Y D+
Sbjct: 612 SDFHDYHHRVLYT*SGDYASTFVYMDW 692
>gb|CN127681.1|CN127681 RHOH1_24_A08.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_A08_A002 5', mRNA sequence
Length = 744
Score = 109 bits (233), Expect = 4e-023
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + VGPA+ H+ T WLW++LR +E +E HSG+
Sbjct: 522 VHHEYATPFGLTSEYAHPAEILFLGFATVVGPALTGPHLFTLWLWMVLRILETVEAHSGY 701
Query: 182 DFPFTPTKYIPFYG 223
FP++P+ ++P YG
Sbjct: 702 HFPWSPSNFLPLYG 743
>gb|BG464569.1|BG464569 EM1_71_D07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 654
Score = 109 bits (232), Expect = 5e-023
Identities = 37/72 (51%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 131 LWIILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYL 310
LW++LR +E +E HSG+ FP++P+ ++P YGG+++HDYHH V N+AS F Y D+L
Sbjct: 2 LWMVLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWL 181
Query: 311 YGTDKGYRFHKT 346
+GTDK YR KT
Sbjct: 182 FGTDKDYRKAKT 217
>gb|CW407060.1|CW407060 fsbb001f100f21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100f21, DNA
sequence
Length = 656
Score = 106 bits (226), Expect = 4e-022
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = +2 / -2
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
+ FPF+P++ IPFYGGA YHDYHHY GG+SQSNFA +FTYCDY+Y TDK
Sbjct: 517 YHFPFSPSRLIPFYGGAAYHDYHHYAGGRSQSNFAPLFTYCDYIYRTDK 371
>gb|CW342011.1|CW342011 104_843_11486637_116_36161_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486637, DNA
sequence
Length = 714
Score = 103 bits (219), Expect = 3e-021
Identities = 38/49 (77%), Positives = 41/49 (83%)
Frame = +2 / +1
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
FDFPF+PTK IPFYGGAE HDYHH G SQSNFA FT+CDY+YGTDK
Sbjct: 208 FDFPFSPTKLIPFYGGAECHDYHHSGGRWSQSNFAPFFTFCDYIYGTDK 354
>gb|CW342013.1|CW342013 104_843_11486638_116_36164_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486638, DNA
sequence
Length = 718
Score = 103 bits (219), Expect = 3e-021
Identities = 38/49 (77%), Positives = 41/49 (83%)
Frame = +2 / +1
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
FDFPF+PTK IPFYGGAE HDYHH G SQSNFA FT+CDY+YGTDK
Sbjct: 208 FDFPFSPTKLIPFYGGAECHDYHHSGGRWSQSNFAPFFTFCDYIYGTDK 354
>gb|CW342014.1|CW342014 104_843_11486638_148_36163_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486638, DNA
sequence
Length = 681
Score = 103 bits (219), Expect = 3e-021
Identities = 38/49 (77%), Positives = 41/49 (83%)
Frame = +2 / -3
Query: 179 FDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDK 325
FDFPF+PTK IPFYGGAE HDYHH G SQSNFA FT+CDY+YGTDK
Sbjct: 592 FDFPFSPTKLIPFYGGAECHDYHHSGGRWSQSNFAPFFTFCDYIYGTDK 446
>gb|CD226192.1|CD226192 CCC1_44_B06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_B06_A007 3', mRNA sequence
Length = 663
Score = 102 bits (217), Expect = 6e-021
Identities = 35/70 (50%), Positives = 51/70 (72%)
Frame = +2 / +2
Query: 137 IILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYG 316
++LR +E +E HSG+ FP++P+ ++P YGG+++HDYHH V N+AS F Y D+L+G
Sbjct: 2 MVLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFG 181
Query: 317 TDKGYRFHKT 346
TDK YR KT
Sbjct: 182 TDKDYRKAKT 211
>gb|CN132247.1|CN132247 OX1_5_B02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_5_B02_A002 3', mRNA sequence
Length = 686
Score = 102 bits (217), Expect = 6e-021
Identities = 35/70 (50%), Positives = 51/70 (72%)
Frame = +2 / +2
Query: 137 IILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYG 316
++LR +E +E HSG+ FP++P+ ++P YGG+++HDYHH V N+AS F Y D+L+G
Sbjct: 2 MVLRILETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFG 181
Query: 317 TDKGYRFHKT 346
TDK YR KT
Sbjct: 182 TDKDYRKAKT 211
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 881,012,941
Number of Sequences: 832831
Number of extensions: 13705995
Number of successful extensions: 95522
Number of sequences better than 1.0e-020: 39
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20435953304
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)