TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440716.2.1
(774 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorgh... 137 5e-038
gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum m... 137 5e-038
gb|CW429209.1|CW429209 fsbb001f142f12k0 Sorghum methylation... 152 5e-036
gb|CD204458.1|CD204458 HS1_8_D09.b1_A012 Heat-shocked seedl... 152 5e-036
gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum m... 122 7e-036
gb|CW439050.1|CW439050 fsbb001f156p22f0 Sorghum methylation... 124 4e-035
gb|CN145338.1|CN145338 WOUND1_28_G04.b2_A002 Wounded leaves... 147 2e-034
gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorgh... 126 3e-034
gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation... 126 3e-034
gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorgh... 126 3e-034
gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorgh... 125 1e-033
gb|CF433443.1|CF433443 NIT1_27_C07.b1_A002 Nitrogen-deficie... 119 4e-033
gb|CW427183.1|CW427183 fsbb001f139a21f0 Sorghum methylation... 142 8e-033
gb|CW316764.1|CW316764 104_808_11473063_148_35855_026 Sorgh... 141 1e-032
gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation... 88 2e-031
gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum m... 134 2e-030
gb|CW397587.1|CW397587 fsbb001f086k03f0 Sorghum methylation... 130 2e-029
gb|CW494886.1|CW494886 fsbb001f286g11f0 Sorghum methylation... 130 2e-029
gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum m... 130 3e-029
gb|BZ347606.1|BZ347606 hm90c01.b1 WGS-SbicolorF (JM107 adap... 129 6e-029
gb|CW312636.1|CW312636 104_802_11470866_116_35781_069 Sorgh... 128 8e-029
gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorgh... 126 4e-028
gb|CD431780.1|CD431780 ETH1_11_F02.b1_A002 Ethylene-treated... 126 5e-028
gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorgh... 125 7e-028
gb|CW494887.1|CW494887 fsbb001f286g11k0 Sorghum methylation... 122 5e-027
gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation... 122 6e-027
gb|CW486745.1|CW486745 fsbb001f252d07f0 Sorghum methylation... 122 6e-027
gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 122 6e-027
gb|CF073613.1|CF073613 FE1_11_A10.b1_A002 Iron-deficient se... 106 4e-026
gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorgh... 118 1e-025
gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation... 118 1e-025
gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation... 118 1e-025
gb|CL187366.1|CL187366 104_402_10900827_116_32436_002 Sorgh... 116 4e-025
gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation... 116 6e-025
gb|CW472599.1|CW472599 fsbb001f227j19k0 Sorghum methylation... 116 6e-025
gb|CB928358.1|CB928358 ABA1_15_H11.b1_A012 Abscisic acid-tr... 116 6e-025
gb|CD227847.1|CD227847 CCC1_56_A04.b1_A007 Callus culture/c... 116 6e-025
gb|CN144834.1|CN144834 WOUND1_25_E11.b2_A002 Wounded leaves... 116 6e-025
gb|CW056909.1|CW056909 104_298_10517934_114_30156 Sorghum m... 115 8e-025
gb|CW115454.1|CW115454 104_490_11106569_116_34592_069 Sorgh... 115 8e-025
gb|CL155907.1|CL155907 104_342_10782487_116_31474_199 Sorgh... 91 1e-024
gb|CW049015.1|CW049015 104_288_10513772_115_30199 Sorghum m... 100 2e-024
gb|CW087763.1|CW087763 104_432_10947820_114_32553_008 Sorgh... 113 3e-024
gb|CW087764.1|CW087764 104_432_10947820_116_32557_008 Sorgh... 113 3e-024
gb|CW028597.1|CW028597 104_255_10499187_116_30393 Sorghum m... 112 5e-024
gb|CL176130.1|CL176130 104_382_10892918_148_31762_134 Sorgh... 112 7e-024
gb|CW090795.1|CW090795 104_436_10949477_114_32604_017 Sorgh... 112 7e-024
gb|CW222899.1|CW222899 104_658_11202620_116_37184_072 Sorgh... 111 1e-023
gb|CW263776.1|CW263776 104_732_11230904_148_35236_028 Sorgh... 111 1e-023
gb|CW370930.1|CW370930 fsbb001f046c06k0 Sorghum methylation... 111 1e-023
gb|CB927938.1|CB927938 ABA1_35_B08.b1_A012 Abscisic acid-tr... 111 1e-023
gb|CW180651.1|CW180651 104_595_11163067_116_36641_076 Sorgh... 111 1e-023
gb|BE364586.2|BE364586 PI1_15_G08.g1_A002 Pathogen induced ... 111 2e-023
gb|CL189680.1|CL189680 104_407_10905541_116_32481_061 Sorgh... 91 3e-023
gb|CW500380.1|CW500380 fsbb001f295k23k0 Sorghum methylation... 91 3e-023
gb|CW208733.1|CW208733 104_638_11188843_148_36982_074 Sorgh... 108 9e-023
gb|CW239897.1|CW239897 104_698_11217909_148_37505_089 Sorgh... 108 9e-023
gb|CW313572.1|CW313572 104_803_11471355_116_35786_002 Sorgh... 108 9e-023
gb|CW496055.1|CW496055 fsbb001f288b11k0 Sorghum methylation... 108 9e-023
gb|BZ335454.1|BZ335454 hx97g09.b1 WGS-SbicolorF (JM107 adap... 107 2e-022
gb|CW296772.1|CW296772 104_778_11461693_148_35632_051 Sorgh... 107 2e-022
gb|CL188255.1|CL188255 104_404_10901465_116_32448_071 Sorgh... 107 2e-022
gb|CW097799.1|CW097799 104_464_11002660_148_34365_014 Sorgh... 107 2e-022
gb|CX613268.1|CX613268 GABR1_7_E10.b1_A002 GA- or brassinol... 107 2e-022
gb|CX614929.1|CX614929 GABR1_17_D12.b1_A002 GA- or brassino... 107 2e-022
gb|CX614147.1|CX614147 GABR1_12_H01.b1_A002 GA- or brassino... 104 2e-022
gb|CW193215.1|CW193215 104_616_11179448_148_36779_032 Sorgh... 106 3e-022
gb|CW351772.1|CW351772 fsbb001f013k19k0 Sorghum methylation... 106 3e-022
gb|CW381313.1|CW381313 fsbb001f062k12k0 Sorghum methylation... 106 3e-022
gb|CW437963.1|CW437963 fsbb001f155f12f0 Sorghum methylation... 106 3e-022
gb|CL159896.1|CL159896 104_350_10804594_114_31822_034 Sorgh... 106 4e-022
gb|CW239896.1|CW239896 104_698_11217909_116_37504_089 Sorgh... 106 4e-022
gb|CB926451.1|CB926451 ABA1_9_A08.b1_A012 Abscisic acid-tre... 106 4e-022
gb|CW173419.1|CW173419 104_585_11156835_148_36550_014 Sorgh... 105 6e-022
gb|CW467955.1|CW467955 fsbb001f219n18f0 Sorghum methylation... 105 1e-021
gb|AW923519.1|AW923519 DG1_52_C12.g1_A002 Dark Grown 1 (DG1... 104 2e-021
gb|CL149321.1|CL149321 104_330_10777748_114_31353_068 Sorgh... 103 3e-021
gb|CW084020.1|CW084020 104_426_10945525_116_32440_055 Sorgh... 103 3e-021
gb|CW265350.1|CW265350 104_734_11231825_148_35261_069 Sorgh... 103 3e-021
gb|CW278981.1|CW278981 104_753_11406838_116_35426_085 Sorgh... 103 3e-021
gb|CX609667.1|CX609667 ANR1_14_B08.b1_A002 Anaerobic roots ... 103 3e-021
gb|CW378268.1|CW378268 fsbb001f056p09k0 Sorghum methylation... 102 4e-021
gb|BE355032.1|BE355032 DG1_10_A04.g1_A002 Dark Grown 1 (DG1... 94 4e-021
gb|CW785094.1|CW785094 SP__Ba0007P10.f SP__Ba Sorghum propi... 103 4e-021
gb|CD212039.1|CD212039 HS1_68_G01.b1_A012 Heat-shocked seed... 103 4e-021
gb|CN133765.1|CN133765 OX1_18_E06.b1_A002 Oxidatively-stres... 103 4e-021
gb|BZ691445.1|BZ691445 SP__Ba0008J08.f SP__Ba Sorghum propi... 102 4e-021
gb|CL164885.1|CL164885 104_359_10808216_116_31817_200 Sorgh... 102 4e-021
gb|BE597326.1|BE597326 PI1_72_B01.g1_A002 Pathogen induced ... 102 4e-021
gb|CW391999.1|CW391999 fsbb001f078g16k0 Sorghum methylation... 102 4e-021
gb|CW785134.1|CW785134 SP__Ba0008J08.f SP__Ba Sorghum propi... 102 5e-021
gb|CW412590.1|CW412590 fsbb001f108e18k0 Sorghum methylation... 102 6e-021
gb|CD223127.1|CD223127 CCC1_26_D11.b1_A007 Callus culture/c... 102 6e-021
gb|BG323036.1|BG323036 EM1_14_B07.g1_A002 Embryo 1 (EM1) So... 93 7e-021
>gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 697
Score = 137 bits (293), Expect(2) = 5e-038
Identities = 54/80 (67%), Positives = 61/80 (76%)
Frame = -2 / -3
Query: 716 PDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQ 537
P+G E V GRG V+ WAPQ EVLAHPAVGGF THNGWNST+E+ISEGVPM+C P+ DQ
Sbjct: 500 PNGFEAAVHGRGKVIRWAPQLEVLAHPAVGGFWTHNGWNSTLESISEGVPMICRPQFADQ 321
Query: 536 FGNMRYVCDVWKVGTELVGE 477
N RYV + W VG EL GE
Sbjct: 320 MMNTRYVVNTWGVGLELEGE 261
Score = 42.3 bits (86), Expect(2) = 5e-038
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -2 / -3
Query: 476 QLERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKGIGIG 354
+LERG+++ A+ +L KEGEE+++R KE K A + G
Sbjct: 263 ELERGKIEEAVRKLMKEKEGEEMRDRAKELKKTVADCLETG 141
>gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515929, DNA
sequence
Length = 565
Score = 137 bits (293), Expect(2) = 5e-038
Identities = 54/80 (67%), Positives = 61/80 (76%)
Frame = -2 / -1
Query: 716 PDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQ 537
P+G E V GRG V+ WAPQ EVLAHPAVGGF THNGWNST+E+ISEGVPM+C P+ DQ
Sbjct: 562 PNGFEAAVHGRGKVIRWAPQLEVLAHPAVGGFWTHNGWNSTLESISEGVPMICRPQFADQ 383
Query: 536 FGNMRYVCDVWKVGTELVGE 477
N RYV + W VG EL GE
Sbjct: 382 MMNTRYVVNTWGVGLELEGE 323
Score = 42.3 bits (86), Expect(2) = 5e-038
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -2 / -1
Query: 476 QLERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKGIGIG 354
+LERG+++ A+ +L KEGEE+++R KE K A + G
Sbjct: 325 ELERGKIEEAVRKLMKEKEGEEMRDRAKELKKTVADCLETG 203
>gb|CW429209.1|CW429209 fsbb001f142f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142f12, DNA
sequence
Length = 799
Score = 152 bits (327), Expect = 5e-036
Identities = 56/78 (71%), Positives = 66/78 (84%)
Frame = -2 / -3
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LPDG+E+E+ GRG +V WAPQEEVL+HPA+ FLTHNGWNSTVE+IS+GVPM+C P GD
Sbjct: 248 LPDGLEEEIHGRGKIVYWAPQEEVLSHPAICAFLTHNGWNSTVESISQGVPMLCRPCFGD 69
Query: 539 QFGNMRYVCDVWKVGTEL 486
QFG RYVCD WKVG E+
Sbjct: 68 QFGTARYVCDFWKVGVEI 15
>gb|CD204458.1|CD204458 HS1_8_D09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_8_D09_A012 3', mRNA sequence
Length = 666
Score = 152 bits (327), Expect = 5e-036
Identities = 56/78 (71%), Positives = 66/78 (84%)
Frame = -2 / +2
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LPDG+E+E+ GRG +V WAPQEEVL+HPA+ FLTHNGWNSTVE+IS+GVPM+C P GD
Sbjct: 83 LPDGLEEEIHGRGKIVYWAPQEEVLSHPAICAFLTHNGWNSTVESISQGVPMLCRPCFGD 262
Query: 539 QFGNMRYVCDVWKVGTEL 486
QFG RYVCD WKVG E+
Sbjct: 263 QFGTARYVCDFWKVGVEI 316
>gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522696, DNA
sequence
Length = 605
Score = 122 bits (261), Expect(4) = 7e-036
Identities = 50/71 (70%), Positives = 55/71 (77%)
Frame = -2 / -2
Query: 689 GRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCD 510
GRG+VV WAPQ+EVL H AVGGF +H GWNST+EAISEGVPM+C P DQ N RYV D
Sbjct: 391 GRGMVVRWAPQQEVLGHRAVGGFWSHCGWNSTLEAISEGVPMICRPDAVDQMMNTRYVQD 212
Query: 509 VWKVGTELVGE 477
VW VG EL GE
Sbjct: 211 VWGVGLELEGE 179
Score = 38.6 bits (78), Expect(4) = 7e-036
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -2 / -2
Query: 476 QLERGQVKAAIDRLFGTKEGEEIKERMKEFK 384
+LERG++K AI +L +EG E++ER +E +
Sbjct: 181 ELERGKIKDAISKLMSEREGGEMRERAQELR 89
Score = 24.0 bits (46), Expect(4) = 7e-036
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2 / -2
Query: 773 PLRVVVRPNLIRGFESG 723
P VVRPN +RG + G
Sbjct: 493 PFLWVVRPNQVRGCDGG 443
Score = 22.6 bits (43), Expect(4) = 7e-036
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -2
Query: 719 LPDGVEDEVR 690
LPDGVED V+
Sbjct: 424 LPDGVEDAVK 395
>gb|CW439050.1|CW439050 fsbb001f156p22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156p22, DNA
sequence
Length = 466
Score = 124 bits (265), Expect(3) = 4e-035
Identities = 51/71 (71%), Positives = 56/71 (78%)
Frame = -2 / -1
Query: 689 GRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCD 510
GRG+VV WAPQ+EVLAH AVGGF +H GWNST+EAISEGVPM+C P DQ N RYV D
Sbjct: 415 GRGMVVRWAPQQEVLAHRAVGGFWSHCGWNSTLEAISEGVPMICRPDAVDQMMNTRYVQD 236
Query: 509 VWKVGTELVGE 477
VW VG EL GE
Sbjct: 235 VWGVGLELEGE 203
Score = 38.6 bits (78), Expect(3) = 4e-035
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -2 / -1
Query: 476 QLERGQVKAAIDRLFGTKEGEEIKERMKEFK 384
+LERG++K AI +L +EG E++ER +E +
Sbjct: 205 ELERGKIKDAISKLMSEREGGEMRERAQELR 113
Score = 24.9 bits (48), Expect(3) = 4e-035
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -3
Query: 719 LPDGVEDEVRGR 684
LPDGVED V+ R
Sbjct: 449 LPDGVEDAVKAR 414
>gb|CN145338.1|CN145338 WOUND1_28_G04.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_G04_A002 3', mRNA sequence
Length = 771
Score = 147 bits (316), Expect = 2e-034
Identities = 56/99 (56%), Positives = 72/99 (72%)
Frame = -2 / +3
Query: 773 PLRVVVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNST 594
P V+R NL++ +LPDG ++ GRG+VV W PQ+EVL H A+GGF THNGWNST
Sbjct: 153 PFLWVIRHNLVKSSNDVSLPDGFKEATHGRGMVVPWVPQQEVLRHHAIGGFWTHNGWNST 332
Query: 593 VEAISEGVPMVCCPRHGDQFGNMRYVCDVWKVGTELVGE 477
+E+I EGVPM+C P+ DQ NMRYV +VWK+G EL G+
Sbjct: 333 LESICEGVPMICRPQFADQMINMRYVQEVWKIGFELDGD 449
>gb|CW249524.1|CW249524 104_711_11222896_148_35046_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222896, DNA
sequence
Length = 707
Score = 126 bits (270), Expect(2) = 3e-034
Identities = 52/81 (64%), Positives = 58/81 (71%)
Frame = -2 / -3
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LP+G E R RG VV WAPQEEVL H AVGGF TH GWNST E I EGVPM+C P GD
Sbjct: 573 LPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGD 394
Query: 539 QFGNMRYVCDVWKVGTELVGE 477
Q G+ RYV VW+VG E+ G+
Sbjct: 393 QMGDTRYVEHVWRVGFEVGGD 331
Score = 40.0 bits (81), Expect(2) = 3e-034
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = -2 / -3
Query: 485 VGEQLERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKGIG 360
VG LERG V+AAI RL ++G E++ R E K AA G
Sbjct: 342 VGGDLERGSVEAAIRRLMTGEDGAEMRARAGELKKAAVDCTG 217
>gb|CW346601.1|CW346601 fsbb001f006d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006d02, DNA
sequence
Length = 704
Score = 126 bits (270), Expect(2) = 3e-034
Identities = 52/81 (64%), Positives = 58/81 (71%)
Frame = -2 / -1
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LP+G E R RG VV WAPQEEVL H AVGGF TH GWNST E I EGVPM+C P GD
Sbjct: 593 LPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGD 414
Query: 539 QFGNMRYVCDVWKVGTELVGE 477
Q G+ RYV VW+VG E+ G+
Sbjct: 413 QMGDTRYVEHVWRVGFEVGGD 351
Score = 40.0 bits (81), Expect(2) = 3e-034
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = -2 / -1
Query: 485 VGEQLERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKGIG 360
VG LERG V+AAI RL ++G E++ R E K AA G
Sbjct: 362 VGGDLERGSVEAAIRRLMTGEDGAEMRARAGELKKAAVDCTG 237
>gb|CW091182.1|CW091182 104_453_10998407_114_33028_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 602
Score = 126 bits (270), Expect(2) = 3e-034
Identities = 52/81 (64%), Positives = 58/81 (71%)
Frame = -2 / -1
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LP+G E R RG VV WAPQEEVL H AVGGF TH GWNST E I EGVPM+C P GD
Sbjct: 419 LPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGD 240
Query: 539 QFGNMRYVCDVWKVGTELVGE 477
Q G+ RYV VW+VG E+ G+
Sbjct: 239 QMGDTRYVEHVWRVGFEVGGD 177
Score = 40.0 bits (81), Expect(2) = 3e-034
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = -2 / -1
Query: 485 VGEQLERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKGIG 360
VG LERG V+AAI RL ++G E++ R E K AA G
Sbjct: 188 VGGDLERGSVEAAIRRLMTGEDGAEMRARAGELKKAAVDCTG 63
>gb|CW316549.1|CW316549 104_808_11472951_116_35853_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472951, DNA
sequence
Length = 665
Score = 125 bits (267), Expect(2) = 1e-033
Identities = 51/77 (66%), Positives = 56/77 (72%)
Frame = -2 / -1
Query: 710 GVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFG 531
G E R RG VV WAPQEEVL H AVGGF TH GWNSTVE++ EGVPM+C P GDQ G
Sbjct: 665 GFEASTRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTVESVCEGVPMLCRPYFGDQMG 486
Query: 530 NMRYVCDVWKVGTELVG 480
N RYV VW+VG E+ G
Sbjct: 485 NARYVEHVWRVGLEVGG 435
Score = 39.6 bits (80), Expect(2) = 1e-033
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -2 / -1
Query: 473 LERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKGIGIG 354
L RGQV+AAI RL +EG++++ R E K AA + G G
Sbjct: 425 LARGQVEAAIGRLMTDEEGDKMRVRAGELKKAAGECTGEG 306
>gb|CF433443.1|CF433443 NIT1_27_C07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_27_C07_A002 3', mRNA sequence
Length = 542
Score = 119 bits (255), Expect(3) = 4e-033
Identities = 49/71 (69%), Positives = 55/71 (77%)
Frame = -2 / +2
Query: 689 GRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCD 510
GRG+VV WAPQ+EVL H AVGGF +H GWNST+EAISEGVPM+C P DQ + RYV D
Sbjct: 86 GRGMVVRWAPQQEVLGHRAVGGFWSHCGWNSTLEAISEGVPMICRPDAVDQMMSPRYVQD 265
Query: 509 VWKVGTELVGE 477
VW VG EL GE
Sbjct: 266 VWGVGLELEGE 298
Score = 38.6 bits (78), Expect(3) = 4e-033
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -2 / +2
Query: 476 QLERGQVKAAIDRLFGTKEGEEIKERMKEFK 384
+LERG++K AI +L +EG E++ER +E +
Sbjct: 296 ELERGKIKDAISKLMSEREGGEMRERAQELR 388
Score = 22.6 bits (43), Expect(3) = 4e-033
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +2
Query: 719 LPDGVEDEVR 690
LPDGVED V+
Sbjct: 53 LPDGVEDAVK 82
>gb|CW427183.1|CW427183 fsbb001f139a21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f139a21, DNA
sequence
Length = 616
Score = 142 bits (304), Expect = 8e-033
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = -2 / -3
Query: 773 PLRVVVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNST 594
P V+R NL++ +LPDG ++ GRG+VV W PQ+EVL H A+GGF THNGWNST
Sbjct: 290 PFLWVIRHNLVKSSNDVSLPDGFKEATHGRGMVVPWVPQQEVLRHHAIGGFWTHNGWNST 111
Query: 593 VEAISEGVPMVCCPRHGDQFGNMRYVCDVWKVG 495
+E+I EGVPM+C P+ DQ NMRYV +VWK+G
Sbjct: 110 LESICEGVPMICRPQFADQMINMRYVQEVWKIG 12
>gb|CW316764.1|CW316764 104_808_11473063_148_35855_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473063, DNA
sequence
Length = 669
Score = 141 bits (303), Expect = 1e-032
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = -2 / -3
Query: 704 EDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNM 525
E+E+ GRG +V WAPQEEVL+HPA+ FLTHNGWNSTVE+IS+GVPM+C P GDQFG
Sbjct: 667 EEEIHGRGKIVYWAPQEEVLSHPAICAFLTHNGWNSTVESISQGVPMLCRPCFGDQFGTA 488
Query: 524 RYVCDVWKVGTEL 486
RYVCD WKVG E+
Sbjct: 487 RYVCDFWKVGVEI 449
>gb|CW394220.1|CW394220 fsbb001f081l05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f081l05, DNA
sequence
Length = 604
Score = 88.1 bits (186), Expect(3) = 2e-031
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = -2 / -1
Query: 632 VGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCDVWKVGTELVG 480
VGGF TH GWNSTVE++ EGVPM+C P GDQ GN RYV VW+VG E+ G
Sbjct: 469 VGGFWTHCGWNSTVESVCEGVPMLCRPYFGDQMGNARYVEHVWRVGLEVGG 317
Score = 47.8 bits (98), Expect(3) = 2e-031
Identities = 21/34 (61%), Positives = 22/34 (64%)
Frame = -2 / -3
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFL 618
LP+G E R RG VV WAPQEEVL H A G L
Sbjct: 557 LPEGFEASTRERGKVVAWAPQEEVLRHRARGRVL 456
Score = 39.6 bits (80), Expect(3) = 2e-031
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -2 / -1
Query: 473 LERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKGIGIG 354
L RGQV+AAI RL +EG++++ R E K AA + G G
Sbjct: 307 LARGQVEAAIGRLMTDEEGDKMRVRAGELKKAAGECTGEG 188
>gb|CW049014.1|CW049014 104_288_10513772_114_30200 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 556
Score = 134 bits (287), Expect = 2e-030
Identities = 52/75 (69%), Positives = 59/75 (78%)
Frame = -2 / +2
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LP+G E RGRG+VV WAPQEEVL H AVGGF THNGWNST+E++ EGVPM+C P GD
Sbjct: 332 LPEGFEAATRGRGMVVAWAPQEEVLRHRAVGGFWTHNGWNSTMESVCEGVPMLCRPYFGD 511
Query: 539 QFGNMRYVCDVWKVG 495
Q GN RYV VW+VG
Sbjct: 512 QTGNARYVEHVWRVG 556
>gb|CW397587.1|CW397587 fsbb001f086k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086k03, DNA
sequence
Length = 705
Score = 130 bits (279), Expect = 2e-029
Identities = 57/97 (58%), Positives = 66/97 (68%)
Frame = -2 / +1
Query: 770 LRVVVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTV 591
L VV R ++ + G LPDG V GRG V+ WAPQ EVLAHPAVGGF THNGWNST+
Sbjct: 118 LWVVRRGLVLLVDKHGELPDGFMPAVEGRGKVIEWAPQLEVLAHPAVGGFWTHNGWNSTL 297
Query: 590 EAISEGVPMVCCPRHGDQFGNMRYVCDVWKVGTELVG 480
E+I EGVPM+ P GDQ RYV D+WK+G L G
Sbjct: 298 ESIYEGVPMLSRPIFGDQLPTARYVRDIWKIGILLDG 408
>gb|CW494886.1|CW494886 fsbb001f286g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286g11, DNA
sequence
Length = 862
Score = 130 bits (279), Expect = 2e-029
Identities = 57/97 (58%), Positives = 66/97 (68%)
Frame = -2 / -3
Query: 770 LRVVVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTV 591
L VV R ++ + G LPDG V GRG V+ WAPQ EVLAHPAVGGF THNGWNST+
Sbjct: 614 LWVVRRGLVLLVDKHGELPDGFMPAVEGRGKVIEWAPQLEVLAHPAVGGFWTHNGWNSTL 435
Query: 590 EAISEGVPMVCCPRHGDQFGNMRYVCDVWKVGTELVG 480
E+I EGVPM+ P GDQ RYV D+WK+G L G
Sbjct: 434 ESIYEGVPMLSRPIFGDQLPTARYVRDIWKIGILLDG 324
>gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506614, DNA
sequence
Length = 710
Score = 130 bits (278), Expect = 3e-029
Identities = 51/80 (63%), Positives = 59/80 (73%)
Frame = -2 / -2
Query: 722 ALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHG 543
ALPDG + RGRG+VV WAPQEEVL HPAVG F TH GWNST+E++ GVP++ P G
Sbjct: 544 ALPDGFDAATRGRGVVVRWAPQEEVLEHPAVGAFWTHCGWNSTLESVCAGVPIMARPCFG 365
Query: 542 DQFGNMRYVCDVWKVGTELV 483
DQ GN RYV DVW+ G LV
Sbjct: 364 DQMGNARYVEDVWRTGLTLV 305
>gb|BZ347606.1|BZ347606 hm90c01.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hm90c01 5', DNA sequence
Length = 584
Score = 129 bits (276), Expect = 6e-029
Identities = 49/86 (56%), Positives = 62/86 (72%)
Frame = -2 / -2
Query: 773 PLRVVVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNST 594
P V+R NL++ +LPDG ++ GRG+VV W PQ+EVL H A+GGF THNGWNST
Sbjct: 265 PFLWVIRHNLVKSSNDVSLPDGFKEATHGRGMVVPWVPQQEVLRHHAIGGFWTHNGWNST 86
Query: 593 VEAISEGVPMVCCPRHGDQFGNMRYV 516
+E+I EGVPM+C P+ DQ NMRYV
Sbjct: 85 LESICEGVPMICRPQFADQMINMRYV 8
>gb|CW312636.1|CW312636 104_802_11470866_116_35781_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470866, DNA
sequence
Length = 660
Score = 128 bits (275), Expect = 8e-029
Identities = 57/140 (40%), Positives = 75/140 (53%)
Frame = -2 / -2
Query: 773 PLRVVVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNST 594
P VVRP+ +R ALP+G + V GRG+ V W QE VL H A GGFL+H GWNST
Sbjct: 482 PFLWVVRPDTVRDAGGWALPEGFAEAVAGRGLTVGWCDQEAVLEHRATGGFLSHCGWNST 303
Query: 593 VEAISEGVPMVCCPRHGDQFGNMRYVCDVWKVGTELVGEQLERGQVKAAIDRLFGTKEGE 414
+E++ GVP++C P +Q N RY CD W VG E+ E R A + + G
Sbjct: 302 LESLRAGVPLLCWPFFSEQVTNCRYACDEWGVGLEMPREAGRREVEAAVRELMDAQGRGA 123
Query: 413 EIKERMKEFKIAAAKGIGIG 354
+ R E+K A + G
Sbjct: 122 AARRRAAEWKEKARAAVAPG 63
>gb|CW091183.1|CW091183 104_453_10998407_116_33032_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998407, DNA
sequence
Length = 577
Score = 126 bits (270), Expect = 4e-028
Identities = 52/81 (64%), Positives = 58/81 (71%)
Frame = -2 / +3
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LP+G E R RG VV WAPQEEVL H AVGGF TH GWNST E I EGVPM+C P GD
Sbjct: 318 LPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGD 497
Query: 539 QFGNMRYVCDVWKVGTELVGE 477
Q G+ RYV VW+VG E+ G+
Sbjct: 498 QMGDTRYVEHVWRVGFEVGGD 560
>gb|CD431780.1|CD431780 ETH1_11_F02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_11_F02_A002 3', mRNA sequence
Length = 528
Score = 126 bits (269), Expect = 5e-028
Identities = 47/71 (66%), Positives = 57/71 (80%)
Frame = -2 / +3
Query: 689 GRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCD 510
GRG+VV W PQ+EVL H A+GGF THNGWNST+E+I EGVPM+C P+ DQ NMRYV +
Sbjct: 3 GRGMVVPWVPQQEVLRHHAIGGFWTHNGWNSTLESICEGVPMICRPQFADQMINMRYVQE 182
Query: 509 VWKVGTELVGE 477
VWK+G EL G+
Sbjct: 183 VWKIGFELDGD 215
>gb|CW289493.1|CW289493 104_768_11412507_148_35551_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 704
Score = 125 bits (268), Expect = 7e-028
Identities = 48/71 (67%), Positives = 55/71 (77%)
Frame = -2 / +3
Query: 716 PDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQ 537
P+G E V GRG V+ WAPQ EVLAHPAVGGF THNGWNST+E+ISEGVPM+C P+ DQ
Sbjct: 489 PNGFEAAVHGRGKVIRWAPQLEVLAHPAVGGFWTHNGWNSTLESISEGVPMICRPQFADQ 668
Query: 536 FGNMRYVCDVW 504
N RYV + W
Sbjct: 669 MMNTRYVVNTW 701
>gb|CW494887.1|CW494887 fsbb001f286g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286g11, DNA
sequence
Length = 769
Score = 122 bits (262), Expect = 5e-027
Identities = 53/89 (59%), Positives = 61/89 (68%)
Frame = -2 / +1
Query: 770 LRVVVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTV 591
L VV R ++ + G LPDG V GRG V+ WAPQ EVLAHPAVGGF THNGWNST+
Sbjct: 502 LWVVRRGLVLLVDKHGELPDGFMPAVEGRGKVIEWAPQLEVLAHPAVGGFWTHNGWNSTL 681
Query: 590 EAISEGVPMVCCPRHGDQFGNMRYVCDVW 504
E+I EGVPM+ P GDQ RYV D+W
Sbjct: 682 ESIYEGVPMLSRPIFGDQLPTARYVRDIW 768
>gb|CW477959.1|CW477959 fsbb001f235j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235j04, DNA
sequence
Length = 541
Score = 122 bits (261), Expect = 6e-027
Identities = 50/75 (66%), Positives = 54/75 (72%)
Frame = -2 / +2
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LP+G E R RG VV WAPQEEVL H AVGGF TH GWNST E I EGVPM+C P GD
Sbjct: 314 LPEGFEAATRERGKVVAWAPQEEVLRHRAVGGFWTHCGWNSTTEGICEGVPMLCRPCFGD 493
Query: 539 QFGNMRYVCDVWKVG 495
Q G+ RYV VW+VG
Sbjct: 494 QMGDTRYVEHVWRVG 538
>gb|CW486745.1|CW486745 fsbb001f252d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252d07, DNA
sequence
Length = 558
Score = 122 bits (261), Expect = 6e-027
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = -2 / +1
Query: 704 EDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNM 525
+ V G+G++VTWAPQ+ VL+HP+V F+TH GWNST+EA+ GVP +CCP DQF N
Sbjct: 79 QQSVNGKGLIVTWAPQQRVLSHPSVACFMTHCGWNSTMEAVLHGVPFLCCPYFADQFCNQ 258
Query: 524 RYVCDVWKVGTELVGEQ 474
YVC+VWK G +L +
Sbjct: 259 SYVCNVWKTGLKLYSNE 309
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
Length = 142376
Score = 122 bits (261), Expect = 6e-027
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = -2 / +1
Query: 704 EDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNM 525
+ V G+G++VTWAPQ+ VL+HP+V F+TH GWNST+EA+ GVP +CCP DQF N
Sbjct: 133201 QQSVNGKGLIVTWAPQQRVLSHPSVACFMTHCGWNSTMEAVLHGVPFLCCPYFADQFCNQ 133380
Query: 524 RYVCDVWKVGTELVGEQ 474
YVC+VWK G +L +
Sbjct: 133381 SYVCNVWKTGLKLYSNE 133431
Score = 115 bits (246), Expect = 8e-025
Identities = 40/79 (50%), Positives = 56/79 (70%)
Frame = -2 / +3
Query: 713 DGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQF 534
DG V G+G++V WAPQ+ VL+HP+V F+TH GWNST+EA+ GVP++C P DQF
Sbjct: 127986 DGFRRRVAGKGLIVGWAPQQRVLSHPSVACFVTHCGWNSTMEAVRHGVPLLCWPYFADQF 128165
Query: 533 GNMRYVCDVWKVGTELVGE 477
N Y+CD+W VG ++ +
Sbjct: 128166 FNQTYICDLWGVGLKVCAD 128222
Score = 108 bits (230), Expect = 1e-022
Identities = 40/67 (59%), Positives = 49/67 (73%)
Frame = -2 / +2
Query: 686 RGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCDV 507
RG VV+W PQ+ VLAHPAV FLTH GWNST+EA+ GVP++C P DQF N Y+CDV
Sbjct: 123377 RGRVVSWCPQQSVLAHPAVACFLTHCGWNSTMEAVRSGVPLLCWPYFTDQFLNQSYICDV 123556
Query: 506 WKVGTEL 486
W G ++
Sbjct: 123557 WGTGLKV 123577
Score = 102 bits (218), Expect = 6e-021
Identities = 36/80 (45%), Positives = 50/80 (62%)
Frame = -2 / +1
Query: 713 DGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQF 534
D V +G+VV WAPQ+ VL+HP+V F++H GWNST+E + GVP +C P DQF
Sbjct: 130489 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 130668
Query: 533 GNMRYVCDVWKVGTELVGEQ 474
N Y+CD W G + ++
Sbjct: 130669 MNQNYICDAWGTGLRIDADE 130728
>gb|CF073613.1|CF073613 FE1_11_A10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_11_A10_A002 3', mRNA sequence
Length = 556
Score = 106 bits (226), Expect(2) = 4e-026
Identities = 38/61 (62%), Positives = 48/61 (78%)
Frame = -2 / +1
Query: 722 ALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHG 543
+LPDG ++ GRG+VV W PQ+EVL H A+GGF THNGWNST+E+I EGVPM+C P+
Sbjct: 10 SLPDGFKEATHGRGMVVPWVPQQEVLRHHAIGGFWTHNGWNSTLESICEGVPMICRPQFA 189
Query: 542 D 540
D
Sbjct: 190 D 192
Score = 33.1 bits (66), Expect(2) = 4e-026
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 539 QFGNMRYVCDVWKVGTELVGE 477
Q NMRYV +VWK+G E+ G+
Sbjct: 194 QMINMRYVQEVWKIGFEIDGD 256
>gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224968, DNA
sequence
Length = 561
Score = 118 bits (252), Expect = 1e-025
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = -2 / +3
Query: 689 GRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCD 510
GRG VV WAPQE+VLAHPA+G FLTH GWNST+E + GVP++C P DQF N Y+CD
Sbjct: 138 GRGKVVEWAPQEKVLAHPAIGCFLTHCGWNSTLEGVRHGVPLLCWPYFTDQFTNQAYICD 317
Query: 509 VWKVGTEL 486
+W+VG +
Sbjct: 318 IWRVGLRM 341
>gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012k24, DNA
sequence
Length = 710
Score = 118 bits (252), Expect = 1e-025
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = -2 / +1
Query: 689 GRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCD 510
GRG VV WAPQE+VLAHPA+G FLTH GWNST+E + GVP++C P DQF N Y+CD
Sbjct: 94 GRGKVVEWAPQEKVLAHPAIGCFLTHCGWNSTLEGVRHGVPLLCWPYFTDQFTNQAYICD 273
Query: 509 VWKVGTEL 486
+W+VG +
Sbjct: 274 IWRVGLRM 297
>gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012m22, DNA
sequence
Length = 637
Score = 118 bits (252), Expect = 1e-025
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = -2 / +1
Query: 689 GRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCD 510
GRG VV WAPQE+VLAHPA+G FLTH GWNST+E + GVP++C P DQF N Y+CD
Sbjct: 94 GRGKVVEWAPQEKVLAHPAIGCFLTHCGWNSTLEGVRHGVPLLCWPYFTDQFTNQAYICD 273
Query: 509 VWKVGTEL 486
+W+VG +
Sbjct: 274 IWRVGLRM 297
>gb|CL187366.1|CL187366 104_402_10900827_116_32436_002 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900827, DNA
sequence
Length = 722
Score = 116 bits (248), Expect = 4e-025
Identities = 44/82 (53%), Positives = 58/82 (70%)
Frame = -2 / -2
Query: 731 ESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCP 552
E+ LP+G + + RGI+ +W PQE VL+HP+VG FLTH GWNST+E+I GVPM+C P
Sbjct: 544 ENAMLPEGFVTDTKERGILASWCPQELVLSHPSVGLFLTHCGWNSTLESICAGVPMLCWP 365
Query: 551 RHGDQFGNMRYVCDVWKVGTEL 486
+Q N RYVCD W +G E+
Sbjct: 364 FFAEQPTNCRYVCDKWGIGMEI 299
>gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097a06, DNA
sequence
Length = 690
Score = 116 bits (247), Expect = 6e-025
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = -2 / -2
Query: 746 LIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVP 567
++R E+ +PD D+ RG+V TW+ Q EVLAHPAVG F+TH GWNST E +S GVP
Sbjct: 539 VVRASETSKIPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVP 360
Query: 566 MVCCPRHGDQFGNMRYVCDVWKVGTEL 486
MV P+ DQ N +Y+ DVW+VG +
Sbjct: 359 MVAMPQWSDQPVNAKYIEDVWRVGVRV 279
>gb|CW472599.1|CW472599 fsbb001f227j19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227j19, DNA
sequence
Length = 436
Score = 116 bits (247), Expect = 6e-025
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = -2 / +3
Query: 746 LIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVP 567
++R E+ +PD D+ RG+V TW+ Q EVLAHPAVG F+TH GWNST E +S GVP
Sbjct: 102 VVRASETSKIPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVP 281
Query: 566 MVCCPRHGDQFGNMRYVCDVWKVGTEL 486
MV P+ DQ N +Y+ DVW+VG +
Sbjct: 282 MVAMPQWSDQPVNAKYIEDVWRVGVRV 362
>gb|CB928358.1|CB928358 ABA1_15_H11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_H11_A012 3', mRNA sequence
Length = 679
Score = 116 bits (247), Expect = 6e-025
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = -2 / +3
Query: 746 LIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVP 567
++R E+ +PD D+ RG+V TW+ Q EVLAHPAVG F+TH GWNST E +S GVP
Sbjct: 66 VVRASETSKIPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVP 245
Query: 566 MVCCPRHGDQFGNMRYVCDVWKVGTEL 486
MV P+ DQ N +Y+ DVW+VG +
Sbjct: 246 MVAMPQWSDQPVNAKYIEDVWRVGVRV 326
>gb|CD227847.1|CD227847 CCC1_56_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_A04_A007 3', mRNA sequence
Length = 630
Score = 116 bits (247), Expect = 6e-025
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = -2 / +1
Query: 746 LIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVP 567
++R E+ +PD D+ RG+V TW+ Q EVLAHPAVG F+TH GWNST E +S GVP
Sbjct: 19 VVRASETSKIPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVP 198
Query: 566 MVCCPRHGDQFGNMRYVCDVWKVGTEL 486
MV P+ DQ N +Y+ DVW+VG +
Sbjct: 199 MVAMPQWSDQPVNAKYIEDVWRVGVRV 279
>gb|CN144834.1|CN144834 WOUND1_25_E11.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_E11_A002 3', mRNA sequence
Length = 631
Score = 116 bits (247), Expect = 6e-025
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = -2 / +1
Query: 746 LIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVP 567
++R E+ +PD D+ RG+V TW+ Q EVLAHPAVG F+TH GWNST E +S GVP
Sbjct: 70 VVRASETSKIPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVP 249
Query: 566 MVCCPRHGDQFGNMRYVCDVWKVGTEL 486
MV P+ DQ N +Y+ DVW+VG +
Sbjct: 250 MVAMPQWSDQPVNAKYIEDVWRVGVRV 330
>gb|CW056909.1|CW056909 104_298_10517934_114_30156 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517934, DNA
sequence
Length = 520
Score = 115 bits (246), Expect = 8e-025
Identities = 44/80 (55%), Positives = 56/80 (70%)
Frame = -2 / -3
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
LP+G D V GRG +V WAPQ++VL H AVG +LTH GWNST+EA+ GV ++C P GD
Sbjct: 467 LPEGFADRVAGRGKLVDWAPQQDVLRHAAVGCYLTHCGWNSTLEAVQHGVRLLCYPVSGD 288
Query: 539 QFGNMRYVCDVWKVGTELVG 480
QF N Y+ VW++G L G
Sbjct: 287 QFINCAYITGVWRIGLRLGG 228
>gb|CW115454.1|CW115454 104_490_11106569_116_34592_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106569, DNA
sequence
Length = 603
Score = 115 bits (246), Expect = 8e-025
Identities = 40/79 (50%), Positives = 56/79 (70%)
Frame = -2 / +2
Query: 713 DGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQF 534
DG V G+G++V WAPQ+ VL+HP+V F+TH GWNST+EA+ GVP++C P DQF
Sbjct: 113 DGFRRRVAGKGLIVGWAPQQRVLSHPSVACFVTHCGWNSTMEAVRHGVPLLCWPYFADQF 292
Query: 533 GNMRYVCDVWKVGTELVGE 477
N Y+CD+W VG ++ +
Sbjct: 293 FNQTYICDLWGVGLKVCAD 349
>gb|CL155907.1|CL155907 104_342_10782487_116_31474_199 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782487, DNA
sequence
Length = 729
Score = 90.9 bits (192), Expect(2) = 1e-024
Identities = 35/53 (66%), Positives = 40/53 (75%)
Frame = -2 / -2
Query: 635 AVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCDVWKVGTELVGE 477
AVGGF TH GWNST E+I EGVPM+C P GDQ GN RYV VW+VG E+ G+
Sbjct: 728 AVGGFWTHGGWNSTAESICEGVPMLCRPYFGDQMGNARYVEHVWRVGLEVGGD 570
Score = 43.7 bits (89), Expect(2) = 1e-024
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = -2 / -2
Query: 485 VGEQLERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKG 366
VG LERG V+AAI RL +G E++ R E K AAA+G
Sbjct: 581 VGGDLERGSVEAAIRRLMTGDDGAEMRTRAGELKKAAAEG 462
>gb|CW049015.1|CW049015 104_288_10513772_115_30199 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513772, DNA
sequence
Length = 379
Score = 100 bits (212), Expect(2) = 2e-024
Identities = 40/60 (66%), Positives = 45/60 (75%)
Frame = -2 / -3
Query: 656 EEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCDVWKVGTELVGE 477
EEV H AVGGF THNGWNST+E++ EGVPM+C P GDQ GN RYV VW+VG E GE
Sbjct: 377 EEVFRHRAVGGFWTHNGWNSTMESVCEGVPMLCRPYFGDQTGNARYVEHVWRVGFEDGGE 198
Score = 34.1 bits (68), Expect(2) = 2e-024
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2 / -3
Query: 482 GEQLERGQVKAAIDRLFGTKEGEEIKERMKEFKIAAAKGIGIG 354
G +LER V+AAI RL +G E++ R E AAA+ I G
Sbjct: 206 GGELERDTVEAAIRRLMTGTDGAEMRARAGELGKAAAECIEKG 78
>gb|CW087763.1|CW087763 104_432_10947820_114_32553_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947820, DNA
sequence
Length = 735
Score = 113 bits (242), Expect = 3e-024
Identities = 47/84 (55%), Positives = 55/84 (65%)
Frame = -2 / +1
Query: 737 GFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVC 558
G E LPDG +EVR RG +VTWAPQ EVLAH A+G F TH GWNS +E++ GVPM+
Sbjct: 433 GEEVPPLPDGFNEEVRNRGKIVTWAPQREVLAHAAIGAFWTHCGWNSILESVCGGVPMLV 612
Query: 557 CPRHGDQFGNMRYVCDVWKVGTEL 486
P DQ N RYV W VG E+
Sbjct: 613 QPCFADQMVNARYVTREWGVGMEV 684
>gb|CW087764.1|CW087764 104_432_10947820_116_32557_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947820, DNA
sequence
Length = 726
Score = 113 bits (242), Expect = 3e-024
Identities = 47/84 (55%), Positives = 55/84 (65%)
Frame = -2 / -2
Query: 737 GFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVC 558
G E LPDG +EVR RG +VTWAPQ EVLAH A+G F TH GWNS +E++ GVPM+
Sbjct: 398 GEEVPPLPDGFNEEVRNRGKIVTWAPQREVLAHAAIGAFWTHCGWNSILESVCGGVPMLV 219
Query: 557 CPRHGDQFGNMRYVCDVWKVGTEL 486
P DQ N RYV W VG E+
Sbjct: 218 QPCFADQMVNARYVTREWGVGMEV 147
>gb|CW028597.1|CW028597 104_255_10499187_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499187, DNA
sequence
Length = 836
Score = 112 bits (240), Expect = 5e-024
Identities = 46/78 (58%), Positives = 55/78 (70%)
Frame = -2 / -3
Query: 719 LPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGD 540
+P+ + + VR RG +V WAPQ EVLAHPAVGGF TH GWNS VEAI+EGVPM+ P +
Sbjct: 678 VPEELRETVRHRGKIVAWAPQREVLAHPAVGGFWTHCGWNSMVEAIAEGVPMLVQPFFAE 499
Query: 539 QFGNMRYVCDVWKVGTEL 486
Q N RYV W VG E+
Sbjct: 498 QIVNARYVTHQWGVGFEV 445
>gb|CL176130.1|CL176130 104_382_10892918_148_31762_134 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892918, DNA
sequence
Length = 744
Score = 112 bits (239), Expect = 7e-024
Identities = 43/79 (54%), Positives = 52/79 (65%)
Frame = -2 / -1
Query: 722 ALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHG 543
ALP+ E RGR + W QE+VL H AVGGFLTH+GWNST E+I GVPM+C P
Sbjct: 696 ALPEDFLAETRGRCFIAEWCAQEQVLRHRAVGGFLTHSGWNSTTESIWSGVPMLCWPGFA 517
Query: 542 DQFGNMRYVCDVWKVGTEL 486
DQ+ N RY C+ W +G L
Sbjct: 516 DQYINCRYACEEWGIGLRL 460
>gb|CW090795.1|CW090795 104_436_10949477_114_32604_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949477, DNA
sequence
Length = 648
Score = 112 bits (239), Expect = 7e-024
Identities = 43/79 (54%), Positives = 52/79 (65%)
Frame = -2 / +3
Query: 722 ALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHG 543
ALP+ E RGR + W QE+VL H AVGGFLTH+GWNST E+I GVPM+C P
Sbjct: 183 ALPEDFLAETRGRCFIAEWCAQEQVLRHRAVGGFLTHSGWNSTTESIWSGVPMLCWPGFA 362
Query: 542 DQFGNMRYVCDVWKVGTEL 486
DQ+ N RY C+ W +G L
Sbjct: 363 DQYINCRYACEEWGIGLRL 419
>gb|CW222899.1|CW222899 104_658_11202620_116_37184_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202620, DNA
sequence
Length = 676
Score = 111 bits (238), Expect = 1e-023
Identities = 48/96 (50%), Positives = 61/96 (63%)
Frame = -2 / -1
Query: 773 PLRVVVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNST 594
P V+RP+++ + AL + V GR VV WAPQ +VL H AVG FLTH+GWNST
Sbjct: 553 PFLWVLRPDMLGASQDAALQEAVAAVGSGRARVVPWAPQRDVLRHRAVGCFLTHSGWNST 374
Query: 593 VEAISEGVPMVCCPRHGDQFGNMRYVCDVWKVGTEL 486
+E I EGVPMVC P DQ N R+V VW+ G ++
Sbjct: 373 LEGIVEGVPMVCWPFFADQQINSRFVGAVWRNGLDM 266
>gb|CW263776.1|CW263776 104_732_11230904_148_35236_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230904, DNA
sequence
Length = 637
Score = 111 bits (238), Expect = 1e-023
Identities = 44/92 (47%), Positives = 58/92 (63%)
Frame = -2 / +1
Query: 761 VVRPNLIRGFESGALPDGVEDEVRGRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAI 582
V+RP+++ + LP+G D GRG+VV W Q EVL+H AVGGFLTH GWNS +E++
Sbjct: 316 VMRPDIVSSDDPDPLPEGFADAAAGRGLVVQWCCQVEVLSHAAVGGFLTHCGWNSILESV 495
Query: 581 SEGVPMVCCPRHGDQFGNMRYVCDVWKVGTEL 486
GVPM+C P DQ N R V W+ G +
Sbjct: 496 WAGVPMLCFPLLTDQITNRRLVAREWRAGVSI 591
>gb|CW370930.1|CW370930 fsbb001f046c06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f046c06, DNA
sequence
Length = 534
Score = 111 bits (238), Expect = 1e-023
Identities = 42/71 (59%), Positives = 50/71 (70%)
Frame = -2 / +1
Query: 689 GRGIVVTWAPQEEVLAHPAVGGFLTHNGWNSTVEAISEGVPMVCCPRHGDQFGNMRYVCD 510
GR V W PQE+VL HPAVG FLTH+GWNST E+++ GVPMVC P DQ+ N +Y C+
Sbjct: 235 GRCHVTAWCPQEQVLRHPAVGCFLTHSGWNSTCESVAAGVPMVCWPGFSDQYTNCKYACE 414
Query: 509 VWKVGTELVGE 477
VW VG L E
Sbjct: 415 VWGVGVRLEPE 447
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 786,941,403
Number of Sequences: 832831
Number of extensions: 9958527
Number of successful extensions: 102900
Number of sequences better than 1.0e-020: 99
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 24119177446
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)