TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440419.2.1
(616 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL187506.1|CL187506 104_403_10900934_114_32462_061 Sorgh... 339 2e-092
gb|CW063191.1|CW063191 104_308_10521767_1_30092 Sorghum met... 330 8e-090
gb|CW460548.1|CW460548 fsbb001f207m18k0 Sorghum methylation... 303 2e-081
gb|CX607326.1|CX607326 ANR1_8_A01.b1_A002 Anaerobic roots S... 280 2e-074
gb|CW232856.1|CW232856 104_685_11213043_148_37487_004 Sorgh... 272 4e-072
gb|CX611873.1|CX611873 ANR1_27_E10.b1_A002 Anaerobic roots ... 122 2e-048
gb|CX606134.1|CX606134 ANR1_1_G08.b1_A002 Anaerobic roots S... 122 2e-048
gb|CX607023.1|CX607023 ANR1_6_F05.b1_A002 Anaerobic roots S... 122 2e-048
gb|CW253365.1|CW253365 104_717_11225045_148_35106_031 Sorgh... 122 2e-048
gb|CW464493.1|CW464493 fsbb001f213m05k0 Sorghum methylation... 122 2e-048
gb|CX621095.1|CX621095 GABR1_56_A09.b1_A002 GA- or brassino... 122 2e-048
gb|CW044142.1|CW044142 104_280_10508785_114_30262 Sorghum m... 122 2e-048
gb|CX608555.1|CX608555 ANR1_39_G03.b1_A002 Anaerobic roots ... 122 2e-048
gb|CX619183.1|CX619183 GABR1_44_A10.b1_A002 GA- or brassino... 122 2e-048
gb|CX617875.1|CX617875 GABR1_36_G09.b1_A002 GA- or brassino... 120 1e-047
gb|CX612734.1|CX612734 GABR1_4_D12.b1_A002 GA- or brassinol... 122 2e-047
gb|CF427061.1|CF427061 PH1_3_H06.b1_A002 Phosphorous-defici... 122 2e-047
gb|CW391540.1|CW391540 fsbb001f077l15f0 Sorghum methylation... 121 3e-046
gb|CW340016.1|CW340016 104_840_11485579_148_36143_066 Sorgh... 102 5e-045
gb|CX611336.1|CX611336 ANR1_24_C05.b1_A002 Anaerobic roots ... 91 8e-044
gb|CD231406.1|CD231406 SS1_16_D04.b1_A012 Salt-stressed see... 122 3e-043
gb|AW671797.1|AW671797 LG1_351_B05.g1_A002 Light Grown 1 (L... 122 1e-041
gb|CD427782.1|CD427782 ETH1_34_A07.b1_A002 Ethylene-treated... 120 2e-040
gb|CW403686.1|CW403686 fsbb001f095i11f0 Sorghum methylation... 120 3e-040
gb|CL194588.1|CL194588 104_419_10941741_114_32294_093 Sorgh... 94 6e-040
gb|CW063192.1|CW063192 104_308_10521767_5_30097 Sorghum met... 162 5e-039
gb|CW124814.1|CW124814 104_504_11111989_148_34703_051 Sorgh... 120 1e-035
gb|CW501750.1|CW501750 fsbb001f297l21f0 Sorghum methylation... 115 3e-032
gb|CW462515.1|CW462515 fsbb001f210l06k0 Sorghum methylation... 84 7e-032
gb|CX620500.1|CX620500 GABR1_52_F03.b1_A002 GA- or brassino... 122 5e-027
gb|CW339413.1|CW339413 104_840_11485261_116_36138_061 Sorgh... 107 9e-026
gb|CW339414.1|CW339414 104_840_11485261_148_36139_061 Sorgh... 107 9e-026
>gb|CL187506.1|CL187506 104_403_10900934_114_32462_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900934, DNA
sequence
Length = 473
Score = 339 bits (735), Expect = 2e-092
Identities = 135/156 (86%), Positives = 138/156 (88%)
Frame = -3 / -1
Query: 548 PPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVLXXXXXXXX 369
PPPNPNTT GDNVYVLAHNTTVDV+LQNANALSRNVSEVHPWHLHGHDFWVL
Sbjct: 473 PPPNPNTTVGDNVYVLAHNTTVDVVLQNANALSRNVSEVHPWHLHGHDFWVLGYGDGAYR 294
Query: 368 XXXXXXXRLNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAE 189
RLNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAE
Sbjct: 293 GDAADEARLNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAE 114
Query: 188 AVDLVAKVPNEAVSCGAXATALMAGGHL*LPSNIGG 81
AVDLV KVPNEAVSCGA ATALMAGGH+*LPSN+GG
Sbjct: 113 AVDLVGKVPNEAVSCGATATALMAGGHV*LPSNVGG 6
Score = 164 bits (352), Expect(2) = 3e-069
Identities = 65/83 (78%), Positives = 67/83 (80%)
Frame = +1 / +1
Query: 82 PPIFDGNHRXXXXXXXXXXXXQDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPG 261
PP FDGNH QDTASLGTL TRSTASAKMTPMPMWRCGS+WQW AHTPG
Sbjct: 7 PPTFDGNHTWPPAMSAVAVAPQDTASLGTLPTRSTASAKMTPMPMWRCGSMWQWNAHTPG 186
Query: 262 LSATNRSIVHPYGKMTAVFRSGG 330
LSATNRSIVHPYGK+TAVFRSGG
Sbjct: 187 LSATNRSIVHPYGKITAVFRSGG 255
Score = 134 bits (288), Expect(3) = 5e-054
Identities = 55/69 (79%), Positives = 58/69 (84%)
Frame = +3 / +3
Query: 78 LATNI*WQSQVTAGHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPHA 257
LA+NI*WQS V AGHE GGRGA G+ LVGHL DEV L EDDAHAHVEVRLD+AVE PH
Sbjct: 3 LASNI*WQSHVAAGHECGGRGAAGHGLVGHLADEVHRLGEDDAHAHVEVRLDVAVERPHP 182
Query: 258 RVVRHEPEH 284
RVVRHEPEH
Sbjct: 183 RVVRHEPEH 209
Score = 119 bits (254), Expect(2) = 3e-069
Identities = 45/50 (90%), Positives = 46/50 (92%)
Frame = +1 / +1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGG 546
TQKSWPWRCHGCTSLT RDSALAFWS+TSTVVLCA TYTLSP VV GFGG
Sbjct: 322 TQKSWPWRCHGCTSLTFRDSALAFWSTTSTVVLCASTYTLSPTVVFGFGG 471
Score = 80.8 bits (170), Expect(3) = 5e-054
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = +3 / +3
Query: 393 QHPEVVAVEVPRVHLADVARQRVGVLEQHVDGGVVRQ 503
QHPEVVAVEVPRVHLADV RQRVGVLE HV GGVVRQ
Sbjct: 318 QHPEVVAVEVPRVHLADVPRQRVGVLEHHVHGGVVRQ 428
Score = 68.9 bits (144), Expect(3) = 2e-025
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -2 / -3
Query: 318 EHGGHLSVRVDDAPVRGGQPGRVGLPLPYRAA 223
EHGG L VRVDDAPVRGGQPG VG+PLP+RAA
Sbjct: 243 EHGGDLPVRVDDAPVRGGQPGGVGVPLPHRAA 148
Score = 51.5 bits (106), Expect(3) = 2e-025
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = -2 / -3
Query: 171 QGAQRGCILWRXGHRAHGRRSPVIAIKYW 85
QGAQRG +L R GHR HGRR VIAIK W
Sbjct: 96 QGAQRGRVLRRHGHRTHGRRPRVIAIKCW 10
Score = 35.4 bits (71), Expect(3) = 5e-054
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +2 / +2
Query: 500 PGRTRCPPPSCWGSAA 547
P RTRCP PSC GSAA
Sbjct: 425 PARTRCPRPSCSGSAA 472
Score = 35.0 bits (70), Expect(3) = 2e-025
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 546 AAEPQHDGGGQRVRPG 499
AAEP+HDG GQRVR G
Sbjct: 471 AAEPEHDGRGQRVRAG 424
>gb|CW063191.1|CW063191 104_308_10521767_1_30092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521767, DNA
sequence
Length = 570
Score = 330 bits (716), Expect = 8e-090
Identities = 133/155 (85%), Positives = 135/155 (87%)
Frame = -3 / +2
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDF 402
ETFSR YDV LPPPNPNTT GDNVYVLAHNTTVDV+LQNANALSRNVSEVHPWHLHGHDF
Sbjct: 104 ETFSRGYDVKLPPPNPNTTVGDNVYVLAHNTTVDVVLQNANALSRNVSEVHPWHLHGHDF 283
Query: 401 WVLXXXXXXXXXXXXXXXRLNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPH 222
WVL RLNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPH
Sbjct: 284 WVLGYGDGAYRGDAADEARLNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPH 463
Query: 221 LHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMA 117
LHMGMGVIFAEAVDLV KVPN+AVSCGA ATALMA
Sbjct: 464 LHMGMGVIFAEAVDLVGKVPNKAVSCGATATALMA 568
Score = 146 bits (313), Expect(2) = 5e-071
Identities = 57/62 (91%), Positives = 59/62 (95%)
Frame = +1 / -1
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
QDTA LGTL TRSTASAKMTPMPMWRCGS+WQW AHTPGLSATNRSIVHPYGK+TAVFRS
Sbjct: 540 QDTALLGTLPTRSTASAKMTPMPMWRCGSMWQWNAHTPGLSATNRSIVHPYGKITAVFRS 361
Query: 325 GG 330
GG
Sbjct: 360 GG 355
Score = 143 bits (306), Expect(2) = 5e-071
Identities = 58/67 (86%), Positives = 59/67 (88%)
Frame = +1 / -1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSYSRLN 576
TQKSWPWRCHGCTSLT RDSALAFWS+TSTVVLCA TYTLSP VV GFGGGS TS RLN
Sbjct: 288 TQKSWPWRCHGCTSLTFRDSALAFWSTTSTVVLCASTYTLSPTVVFGFGGGSFTS*PRLN 109
Query: 577 VSAXRAA 597
VSA RAA
Sbjct: 108 VSAGRAA 88
Score = 112 bits (240), Expect(3) = 2e-056
Identities = 45/56 (80%), Positives = 47/56 (83%)
Frame = +3 / -3
Query: 117 GHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPHARVVRHEPEH 284
GHE GGRGA G+ LVGHL DEV L EDDAHAHVEVRLD+AVE PH RVVRHEPEH
Sbjct: 568 GHECGGRGAAGHGLVGHLADEVHRLGEDDAHAHVEVRLDVAVERPHPRVVRHEPEH 401
Score = 80.8 bits (170), Expect(3) = 2e-056
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = +3 / -3
Query: 393 QHPEVVAVEVPRVHLADVARQRVGVLEQHVDGGVVRQ 503
QHPEVVAVEVPRVHLADV RQRVGVLE HV GGVVRQ
Sbjct: 292 QHPEVVAVEVPRVHLADVPRQRVGVLEHHVHGGVVRQ 182
Score = 68.9 bits (144), Expect(3) = 1e-029
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -2 / +1
Query: 318 EHGGHLSVRVDDAPVRGGQPGRVGLPLPYRAA 223
EHGG L VRVDDAPVRGGQPG VG+PLP+RAA
Sbjct: 367 EHGGDLPVRVDDAPVRGGQPGGVGVPLPHRAA 462
Score = 66.1 bits (138), Expect(3) = 1e-029
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -2 / +1
Query: 597 GGAXRGDVQPGIRRDAAAAEPQHDGGGQRVRPG 499
GGA GDVQPG+RR+AAAAEP+HDG GQRVR G
Sbjct: 88 GGAPGGDVQPGLRREAAAAEPEHDGRGQRVRAG 186
Score = 65.2 bits (136), Expect(3) = 2e-056
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2 / -2
Query: 500 PGRTRCPPPSCWGSAAAASRRIPG*TSPRXAPP 598
P RTRCP PSC GSAAAASRR PG*TSP APP
Sbjct: 185 PARTRCPRPSCSGSAAAASRRSPG*TSPPGAPP 87
Score = 35.0 bits (70), Expect(3) = 1e-029
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2 / +1
Query: 171 QGAQRGCILWRXGHRAHGR 115
QGAQ+G +L R GHR HGR
Sbjct: 514 QGAQQGRVLRRHGHRTHGR 570
>gb|CW460548.1|CW460548 fsbb001f207m18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207m18, DNA
sequence
Length = 488
Score = 303 bits (656), Expect = 2e-081
Identities = 122/142 (85%), Positives = 125/142 (88%)
Frame = -3 / -2
Query: 506 VLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVLXXXXXXXXXXXXXXXRLNLRDP 327
VLAHNTTVDV+LQNANALSRNVSEVHPWHLHGHDFWVL RLNLRDP
Sbjct: 487 VLAHNTTVDVVLQNANALSRNVSEVHPWHLHGHDFWVLGYGDGAYRGDAADEARLNLRDP 308
Query: 326 PLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVS 147
PLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLV KVPNEAVS
Sbjct: 307 PLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVGKVPNEAVS 128
Query: 146 CGAXATALMAGGHL*LPSNIGG 81
CGA ATALMAGGH+*LPSN+GG
Sbjct: 127 CGATATALMAGGHV*LPSNVGG 62
Score = 164 bits (352), Expect(2) = 4e-061
Identities = 65/83 (78%), Positives = 67/83 (80%)
Frame = +1 / +3
Query: 82 PPIFDGNHRXXXXXXXXXXXXQDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPG 261
PP FDGNH QDTASLGTL TRSTASAKMTPMPMWRCGS+WQW AHTPG
Sbjct: 63 PPTFDGNHTWPPAMSAVAVAPQDTASLGTLPTRSTASAKMTPMPMWRCGSMWQWNAHTPG 242
Query: 262 LSATNRSIVHPYGKMTAVFRSGG 330
LSATNRSIVHPYGK+TAVFRSGG
Sbjct: 243 LSATNRSIVHPYGKITAVFRSGG 311
Score = 136 bits (292), Expect(2) = 2e-049
Identities = 56/70 (80%), Positives = 59/70 (84%)
Frame = +3 / +2
Query: 75 SLATNI*WQSQVTAGHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPH 254
SLA+NI*WQS V AGHE GGRGA G+ LVGHL DEV L EDDAHAHVEVRLD+AVE PH
Sbjct: 56 SLASNI*WQSHVAAGHECGGRGAAGHGLVGHLADEVHRLGEDDAHAHVEVRLDVAVERPH 235
Query: 255 ARVVRHEPEH 284
RVVRHEPEH
Sbjct: 236 PRVVRHEPEH 265
Score = 92.3 bits (195), Expect(2) = 4e-061
Identities = 34/37 (91%), Positives = 35/37 (94%)
Frame = +1 / +3
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCART 507
TQKSWPWRCHGCTSLT RDSALAFWS+TSTVVLCA T
Sbjct: 378 TQKSWPWRCHGCTSLTFRDSALAFWSTTSTVVLCAST 488
Score = 80.8 bits (170), Expect(2) = 2e-049
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = +3 / +2
Query: 393 QHPEVVAVEVPRVHLADVARQRVGVLEQHVDGGVVRQ 503
QHPEVVAVEVPRVHLADV RQRVGVLE HV GGVVRQ
Sbjct: 374 QHPEVVAVEVPRVHLADVPRQRVGVLEHHVHGGVVRQ 484
>gb|CX607326.1|CX607326 ANR1_8_A01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_8_A01_A002 3', mRNA sequence
Length = 609
Score = 280 bits (605), Expect = 2e-074
Identities = 112/131 (85%), Positives = 114/131 (87%)
Frame = -3 / +2
Query: 473 LQNANALSRNVSEVHPWHLHGHDFWVLXXXXXXXXXXXXXXXRLNLRDPPLRNTAVIFPY 294
LQNANALSRNVSEVHPWHLHGHDFWVL RLNLRDPPLRNTAVIFPY
Sbjct: 2 LQNANALSRNVSEVHPWHLHGHDFWVLGYGDGAYRGDAADEARLNLRDPPLRNTAVIFPY 181
Query: 293 GWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAG 114
GWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLV KVPNEAVSCGA ATALMAG
Sbjct: 182 GWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVGKVPNEAVSCGATATALMAG 361
Query: 113 GHL*LPSNIGG 81
GH+*LPSN+GG
Sbjct: 362 GHV*LPSNVGG 394
Score = 164 bits (352), Expect(2) = 1e-054
Identities = 65/83 (78%), Positives = 67/83 (80%)
Frame = +1 / -1
Query: 82 PPIFDGNHRXXXXXXXXXXXXQDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPG 261
PP FDGNH QDTASLGTL TRSTASAKMTPMPMWRCGS+WQW AHTPG
Sbjct: 393 PPTFDGNHTWPPAMSAVAVAPQDTASLGTLPTRSTASAKMTPMPMWRCGSMWQWNAHTPG 214
Query: 262 LSATNRSIVHPYGKMTAVFRSGG 330
LSATNRSIVHPYGK+TAVFRSGG
Sbjct: 213 LSATNRSIVHPYGKITAVFRSGG 145
Score = 136 bits (292), Expect(2) = 7e-044
Identities = 56/70 (80%), Positives = 59/70 (84%)
Frame = +3 / -3
Query: 75 SLATNI*WQSQVTAGHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPH 254
SLA+NI*WQS V AGHE GGRGA G+ LVGHL DEV L EDDAHAHVEVRLD+AVE PH
Sbjct: 400 SLASNI*WQSHVAAGHECGGRGAAGHGLVGHLADEVHRLGEDDAHAHVEVRLDVAVERPH 221
Query: 255 ARVVRHEPEH 284
RVVRHEPEH
Sbjct: 220 PRVVRHEPEH 191
Score = 70.7 bits (148), Expect(2) = 1e-054
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1 / -1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWS 474
TQKSWPWRCHGCTSLT RD+ALAFWS
Sbjct: 78 TQKSWPWRCHGCTSLTFRDNALAFWS 1
Score = 62.0 bits (129), Expect(2) = 7e-044
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +3 / -3
Query: 393 QHPEVVAVEVPRVHLADVARQRVGVLE 473
QHPEVVAVEVPRVHLADV RQRVGVLE
Sbjct: 82 QHPEVVAVEVPRVHLADVPRQRVGVLE 2
>gb|CW232856.1|CW232856 104_685_11213043_148_37487_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213043, DNA
sequence
Length = 514
Score = 272 bits (588), Expect = 4e-072
Identities = 110/131 (83%), Positives = 112/131 (85%)
Frame = -3 / -2
Query: 473 LQNANALSRNVSEVHPWHLHGHDFWVLXXXXXXXXXXXXXXXRLNLRDPPLRNTAVIFPY 294
LQNA ALSRNVSEVH WHLHGHDFWVL RLNLRDPPLRNTAVIFPY
Sbjct: 513 LQNACALSRNVSEVHTWHLHGHDFWVLGYGDGAYRGDAADEARLNLRDPPLRNTAVIFPY 334
Query: 293 GWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAG 114
GWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLV KVPNEAVSCGA ATALMAG
Sbjct: 333 GWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVGKVPNEAVSCGATATALMAG 154
Query: 113 GHL*LPSNIGG 81
GH+*LPSN+GG
Sbjct: 153 GHV*LPSNVGG 121
Score = 164 bits (352), Expect(2) = 4e-053
Identities = 65/83 (78%), Positives = 67/83 (80%)
Frame = +1 / +2
Query: 82 PPIFDGNHRXXXXXXXXXXXXQDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPG 261
PP FDGNH QDTASLGTL TRSTASAKMTPMPMWRCGS+WQW AHTPG
Sbjct: 122 PPTFDGNHTWPPAMSAVAVAPQDTASLGTLPTRSTASAKMTPMPMWRCGSMWQWNAHTPG 301
Query: 262 LSATNRSIVHPYGKMTAVFRSGG 330
LSATNRSIVHPYGK+TAVFRSGG
Sbjct: 302 LSATNRSIVHPYGKITAVFRSGG 370
Score = 136 bits (292), Expect(2) = 2e-043
Identities = 56/70 (80%), Positives = 59/70 (84%)
Frame = +3 / +1
Query: 75 SLATNI*WQSQVTAGHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPH 254
SLA+NI*WQS V AGHE GGRGA G+ LVGHL DEV L EDDAHAHVEVRLD+AVE PH
Sbjct: 115 SLASNI*WQSHVAAGHECGGRGAAGHGLVGHLADEVHRLGEDDAHAHVEVRLDVAVERPH 294
Query: 255 ARVVRHEPEH 284
RVVRHEPEH
Sbjct: 295 PRVVRHEPEH 324
Score = 65.2 bits (136), Expect(2) = 4e-053
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +1 / +2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWS 474
TQKSWPWRCH CTSLT RDSA AFWS
Sbjct: 437 TQKSWPWRCHVCTSLTFRDSAQAFWS 514
Score = 60.2 bits (125), Expect(2) = 2e-043
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +3 / +1
Query: 393 QHPEVVAVEVPRVHLADVARQRVGVLE 473
QHPEVVAVEVPRVHLADV RQR GVLE
Sbjct: 433 QHPEVVAVEVPRVHLADVPRQRAGVLE 513
>gb|CX611873.1|CX611873 ANR1_27_E10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_E10_A002 3', mRNA sequence
Length = 769
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 394 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 573
Query: 161 NEAVSCG 141
E CG
Sbjct: 574 KEITGCG 594
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / +1
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 175 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 345
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -3
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 578 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 405
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / -3
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 341 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 174
>gb|CX606134.1|CX606134 ANR1_1_G08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_G08_A002 3', mRNA sequence
Length = 750
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 375 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 554
Query: 161 NEAVSCG 141
E CG
Sbjct: 555 KEITGCG 575
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / +3
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 156 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 326
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -3
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 559 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 386
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / -3
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 322 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 155
>gb|CX607023.1|CX607023 ANR1_6_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_F05_A002 3', mRNA sequence
Length = 723
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 314 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 493
Query: 161 NEAVSCG 141
E CG
Sbjct: 494 KEITGCG 514
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / +2
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 95 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 265
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -1
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 498 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 325
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / -1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 261 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 94
>gb|CW253365.1|CW253365 104_717_11225045_148_35106_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225045, DNA
sequence
Length = 719
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 462 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 283
Query: 161 NEAVSCG 141
E CG
Sbjct: 282 KEITGCG 262
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / -3
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 681 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 511
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / +2
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 278 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 451
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / +2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 515 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 682
>gb|CW464493.1|CW464493 fsbb001f213m05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213m05, DNA
sequence
Length = 688
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 464 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 285
Query: 161 NEAVSCG 141
E CG
Sbjct: 284 KEITGCG 264
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / -3
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 683 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 513
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / +1
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 280 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 453
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / +1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 517 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 684
>gb|CX621095.1|CX621095 GABR1_56_A09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_56_A09_A002 3', mRNA sequence
Length = 672
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 309 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 488
Query: 161 NEAVSCG 141
E CG
Sbjct: 489 KEITGCG 509
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / +3
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 90 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 260
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -3
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 493 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 320
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / -3
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 256 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 89
>gb|CW044142.1|CW044142 104_280_10508785_114_30262 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508785, DNA
sequence
Length = 643
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / -2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 300 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 121
Query: 161 NEAVSCG 141
E CG
Sbjct: 120 KEITGCG 100
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / -2
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 519 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 349
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / +2
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 116 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 289
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / +2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 353 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 520
>gb|CX608555.1|CX608555 ANR1_39_G03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_G03_A002 3', mRNA sequence
Length = 630
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 250 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 429
Query: 161 NEAVSCG 141
E CG
Sbjct: 430 KEITGCG 450
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / +1
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 31 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 201
Score = 84.9 bits (179), Expect(2) = 1e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -2
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 434 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 261
Score = 56.1 bits (116), Expect(2) = 1e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / -2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 197 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTAYMSY 30
>gb|CX619183.1|CX619183 GABR1_44_A10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_44_A10_A002 3', mRNA sequence
Length = 627
Score = 122 bits (261), Expect(2) = 2e-048
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 235 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 414
Query: 161 NEAVSCG 141
E CG
Sbjct: 415 KEITGCG 435
Score = 91.3 bits (193), Expect(2) = 2e-048
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / +1
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 16 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 186
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -2
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 419 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 246
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / -2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 182 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 15
>gb|CX617875.1|CX617875 GABR1_36_G09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_36_G09_A002 3', mRNA sequence
Length = 703
Score = 120 bits (256), Expect(2) = 1e-047
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
+L+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 311 SLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 490
Query: 161 NEAVSCG 141
E CG
Sbjct: 491 KEITGCG 511
Score = 91.3 bits (193), Expect(2) = 1e-047
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / +2
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 92 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 262
Score = 84.9 bits (179), Expect(2) = 3e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -2
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 495 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 322
Score = 54.7 bits (113), Expect(2) = 3e-026
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / -2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 258 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 91
>gb|CX612734.1|CX612734 GABR1_4_D12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_D12_A002 3', mRNA sequence
Length = 707
Score = 122 bits (261), Expect(2) = 2e-047
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 311 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 490
Query: 161 NEAVSCG 141
E CG
Sbjct: 491 KEITGCG 511
Score = 87.7 bits (185), Expect(2) = 2e-047
Identities = 33/57 (57%), Positives = 38/57 (66%)
Frame = -3 / +2
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPW LHGHDFWVL
Sbjct: 92 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWRLHGHDFWVL 262
Score = 84.9 bits (179), Expect(3) = 7e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -3
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 495 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 322
Score = 48.7 bits (100), Expect(3) = 7e-026
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3 / -2
Query: 393 QHPEVVAVEVPRVHLADVARQRVGVLEQHVDGG 491
+HPEV+ V+ PRV LA V RQ VGVL+ VD G
Sbjct: 262 EHPEVMPVQAPRVRLALVGRQHVGVLQHDVDDG 164
Score = 22.1 bits (42), Expect(3) = 7e-026
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2 / -1
Query: 503 GRTRCPPPSCWGSAAAASRR 562
GR RC P S AAA+ R
Sbjct: 110 GRRRCRTPGARTSPAAAAGR 51
>gb|CF427061.1|CF427061 PH1_3_H06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_3_H06_A002 3', mRNA sequence
Length = 576
Score = 122 bits (261), Expect(2) = 2e-047
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 202 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 381
Query: 161 NEAVSCG 141
E CG
Sbjct: 382 KEITGCG 402
Score = 87.7 bits (185), Expect(2) = 2e-047
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = -3 / +1
Query: 539 NPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 7 NPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 153
Score = 84.9 bits (179), Expect(2) = 4e-026
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -2
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 386 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 213
Score = 54.2 bits (112), Expect(2) = 4e-026
Identities = 26/48 (54%), Positives = 28/48 (58%)
Frame = +1 / -2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGF 540
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF
Sbjct: 149 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGF 6
>gb|CW391540.1|CW391540 fsbb001f077l15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077l15, DNA
sequence
Length = 467
Score = 121 bits (259), Expect(2) = 3e-046
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = -3 / -1
Query: 344 LNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVD 180
L+ PPLRNT V+FP+GWT+LRFVADNPGVWAFHCHIEPHLH+GMGVIFAE ++
Sbjct: 266 LDTATPPLRNTVVLFPHGWTVLRFVADNPGVWAFHCHIEPHLHLGMGVIFAEGME 102
Score = 102 bits (217), Expect(2) = 6e-034
Identities = 39/50 (78%), Positives = 40/50 (80%)
Frame = +1 / +1
Query: 181 STASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S SAKMTPMP WRCGS+WQW AHTPGLSATNRS V P G T VFRSGG
Sbjct: 103 SIPSAKMTPMPKWRCGSMWQWNAHTPGLSATNRSTVQPCGNSTTVFRSGG 252
Score = 84.9 bits (179), Expect(2) = 3e-046
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = -3 / -1
Query: 542 PNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
P T + D V+ +AH VDV+LQNA+AL +VSE HPWHLHGHDFWVL
Sbjct: 461 PRVPTASSDRVFRIAHGAVVDVVLQNASALEEDVSESHPWHLHGHDFWVL 312
Score = 62.9 bits (131), Expect(2) = 6e-034
Identities = 27/41 (65%), Positives = 28/41 (68%)
Frame = +1 / +1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLS 519
TQKSWP RCHGC SLT SALAF S+TST CA T S
Sbjct: 316 TQKSWPCRCHGCDSLTSSSSALAFCSTTSTTAPCAIRNTRS 438
>gb|CW340016.1|CW340016 104_840_11485579_148_36143_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485579, DNA
sequence
Length = 722
Score = 102 bits (217), Expect(2) = 5e-045
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIF 195
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F
Sbjct: 147 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVF 1
Score = 100 bits (212), Expect(2) = 5e-045
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = -3 / -3
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YDV PPPNP T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 366 YDVYAPPPNPAATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 196
Score = 69.3 bits (145), Expect(2) = 3e-024
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = +1 / +2
Query: 196 KMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 2 KTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 136
Score = 63.4 bits (132), Expect(2) = 3e-024
Identities = 30/56 (53%), Positives = 33/56 (58%)
Frame = +1 / +2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RC GC SL L S LAF S+TST Y+ S V G GGG+ TSY
Sbjct: 200 TQKSCPCRCQGCVSLLLAASMLAFCSTTSTTEPNCSRYSPSLTVAAGLGGGAYTSY 367
>gb|CX611336.1|CX611336 ANR1_24_C05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_C05_A002 3', mRNA sequence
Length = 777
Score = 91.3 bits (193), Expect(3) = 8e-044
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / +1
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 196 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 366
Score = 63.8 bits (133), Expect(3) = 8e-044
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVW 249
NL+DP L+NT + PYGWT LRF ADNPGVW
Sbjct: 415 NLKDPILKNTVAVHPYGWTALRFKADNPGVW 507
Score = 61.6 bits (128), Expect(3) = 8e-044
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -3 / +3
Query: 248 AFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCG 141
AFHCHIE H MGMG++F E V+ VA++P E CG
Sbjct: 507 AFHCHIESHFFMGMGIVFEEGVERVAQLPKEITGCG 614
Score = 54.7 bits (113), Expect(3) = 4e-022
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +1 / -2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P RCHGC SL L S LAF S+TST Y+ S V GF + SY
Sbjct: 362 TQKSCPCRCHGCVSLLLAASMLAFCSTTSTTDPNCSRYSPSLTVAFGFRWTA*MSY 195
Score = 45.1 bits (92), Expect(3) = 4e-022
Identities = 19/27 (70%), Positives = 19/27 (70%)
Frame = +1 / -2
Query: 250 HTPGLSATNRSIVHPYGKMTAVFRSGG 330
HTPGLSA NRS VHPYG VF S G
Sbjct: 506 HTPGLSALNRSAVHPYGCTATVFFSIG 426
Score = 43.2 bits (88), Expect(3) = 4e-022
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1 / -3
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPG 261
S G+ ATRST S+K P+PM + S+WQW A G
Sbjct: 598 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNATRRG 494
>gb|CD231406.1|CD231406 SS1_16_D04.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_16_D04_A012 3', mRNA sequence
Length = 589
Score = 122 bits (261), Expect(2) = 3e-043
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 174 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 353
Query: 161 NEAVSCG 141
E CG
Sbjct: 354 KEITGCG 374
Score = 83.5 bits (176), Expect(2) = 3e-024
Identities = 34/54 (62%), Positives = 39/54 (72%)
Frame = +1 / -1
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVF 318
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF
Sbjct: 358 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVF 197
Score = 73.9 bits (155), Expect(2) = 3e-043
Identities = 27/40 (67%), Positives = 31/40 (77%)
Frame = -3 / +3
Query: 512 VYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
+Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 6 LYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 125
Score = 49.2 bits (101), Expect(2) = 3e-024
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = +1 / -1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTST 486
TQKS P RCHGC SL L S LAF S+TST
Sbjct: 121 TQKSCPCRCHGCVSLLLAASMLAFCSTTST 32
>gb|AW671797.1|AW671797 LG1_351_B05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 122 bits (261), Expect(2) = 1e-041
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 140 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 319
Query: 161 NEAVSCG 141
E CG
Sbjct: 320 KEITGCG 340
Score = 84.9 bits (179), Expect(2) = 6e-024
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = +1 / -1
Query: 157 SLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRSGG 330
S G+ ATRST S+K P+PM + S+WQW AHTPGLSA NRS VHPYG VF S G
Sbjct: 324 SFGS*ATRSTPSSKTMPIPMKK*DSMWQWNAHTPGLSALNRSAVHPYGCTATVFFSIG 151
Score = 68.4 bits (143), Expect(2) = 1e-041
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -3 / +2
Query: 482 DVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
DV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 2 DVVLQNANMLAANKSETHPWHLHGHDFWVL 91
Score = 46.9 bits (96), Expect(2) = 6e-024
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = +1 / -1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTS 483
TQKS P RCHGC SL L S LAF S+TS
Sbjct: 87 TQKSCPCRCHGCVSLLLAASMLAFCSTTS 1
>gb|CD427782.1|CD427782 ETH1_34_A07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_A07_A002 3', mRNA sequence
Length = 665
Score = 120 bits (257), Expect(3) = 2e-040
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NLRDP ++NT + P GWT +RFVADNPGVW FHCHIE H++MGMGV+F E VD V ++P
Sbjct: 233 NLRDPVMKNTVALHPKGWTAVRFVADNPGVWLFHCHIEAHVYMGMGVVFEEGVDKVGRLP 412
Query: 161 NEAVSCGAXAT 129
+ CG T
Sbjct: 413 KSVMGCGRSRT 445
Score = 50.6 bits (104), Expect(3) = 2e-040
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3 / +2
Query: 446 NVSEVHPWHLHGHDFWVL 393
N SE HPWHLHGHDFWVL
Sbjct: 131 NKSETHPWHLHGHDFWVL 184
Score = 34.1 bits (68), Expect(3) = 2e-040
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3 / +2
Query: 545 PPNPNTTAGDNVYVLAHNTTVDVLLQNANALS 450
PP N T VY LA + VDV+LQN AL+
Sbjct: 35 PPAANGTVASAVYRLALGSVVDVVLQNTVALN 130
>gb|CW403686.1|CW403686 fsbb001f095i11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f095i11, DNA
sequence
Length = 635
Score = 120 bits (256), Expect(3) = 3e-040
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NLRDP ++NT + P GWT +RFVADNPGVW FHCHIE H++MGMGV+F E VD V ++P
Sbjct: 384 NLRDPVMKNTVALHPKGWTAVRFVADNPGVWLFHCHIEAHVYMGMGVVFEEGVDKVGRLP 205
Query: 161 NEAVSCGAXAT 129
+ CG T
Sbjct: 204 KSIMGCGRSRT 172
Score = 50.6 bits (104), Expect(3) = 3e-040
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3 / -3
Query: 446 NVSEVHPWHLHGHDFWVL 393
N SE HPWHLHGHDFWVL
Sbjct: 486 NKSETHPWHLHGHDFWVL 433
Score = 34.1 bits (68), Expect(3) = 3e-040
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3 / -3
Query: 545 PPNPNTTAGDNVYVLAHNTTVDVLLQNANALS 450
PP N T VY LA + VDV+LQN AL+
Sbjct: 582 PPAANGTVASAVYRLALGSVVDVVLQNTVALN 487
>gb|CL194588.1|CL194588 104_419_10941741_114_32294_093 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941741, DNA
sequence
Length = 629
Score = 94.1 bits (199), Expect(2) = 6e-040
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGM 207
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGM
Sbjct: 135 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGM 1
Score = 91.3 bits (193), Expect(2) = 6e-040
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3 / -3
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ NPN T D +Y L + VDV+LQNAN L+ N SE HPWHLHGHDFWVL
Sbjct: 354 YDIYAVQRNPNATVSDGLYRLQFGSVVDVVLQNANMLAANKSETHPWHLHGHDFWVL 184
>gb|CW063192.1|CW063192 104_308_10521767_5_30097 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521767, DNA
sequence
Length = 554
Score = 162 bits (348), Expect = 5e-039
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = -3 / -2
Query: 284 MLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAGGHL 105
MLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLV KVPNEAVSCGA ATALMAGGH+
Sbjct: 553 MLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVGKVPNEAVSCGATATALMAGGHV 374
Query: 104 *LPSNIGG 81
*LPSN+GG
Sbjct: 373 *LPSNVGG 350
Score = 136 bits (292), Expect = 3e-031
Identities = 56/70 (80%), Positives = 59/70 (84%)
Frame = +3 / +2
Query: 75 SLATNI*WQSQVTAGHERGGRGATGYSLVGHLGDEVDSLSEDDAHAHVEVRLDMAVEGPH 254
SLA+NI*WQS V AGHE GGRGA G+ LVGHL DEV L EDDAHAHVEVRLD+AVE PH
Sbjct: 344 SLASNI*WQSHVAAGHECGGRGAAGHGLVGHLADEVHRLGEDDAHAHVEVRLDVAVERPH 523
Query: 255 ARVVRHEPEH 284
RVVRHEPEH
Sbjct: 524 PRVVRHEPEH 553
Score = 128 bits (274), Expect = 8e-029
Identities = 51/68 (75%), Positives = 52/68 (76%)
Frame = +1 / +3
Query: 82 PPIFDGNHRXXXXXXXXXXXXQDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPG 261
PP FDGNH QDTASLGTL TRSTASAKMTPMPMWRCGS+WQW AHTPG
Sbjct: 351 PPTFDGNHTWPPAMSAVAVAPQDTASLGTLPTRSTASAKMTPMPMWRCGSMWQWNAHTPG 530
Query: 262 LSATNRSI 285
LSATNRSI
Sbjct: 531 LSATNRSI 554
>gb|CW124814.1|CW124814 104_504_11111989_148_34703_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111989, DNA
sequence
Length = 493
Score = 120 bits (256), Expect(2) = 1e-035
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NLRDP ++NT + P GWT +RFVADNPGVW FHCHIE H++MGMGV+F E VD V ++P
Sbjct: 103 NLRDPVMKNTVALHPKGWTAVRFVADNPGVWLFHCHIEAHVYMGMGVVFEEGVDKVGRLP 282
Query: 161 NEAVSCGAXAT 129
+ CG T
Sbjct: 283 KSIMGCGRSRT 315
Score = 50.6 bits (104), Expect(2) = 1e-035
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3 / +1
Query: 446 NVSEVHPWHLHGHDFWVL 393
N SE HPWHLHGHDFWVL
Sbjct: 1 NKSETHPWHLHGHDFWVL 54
>gb|CW501750.1|CW501750 fsbb001f297l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f297l21, DNA
sequence
Length = 479
Score = 115 bits (245), Expect(2) = 3e-032
Identities = 40/67 (59%), Positives = 50/67 (74%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT +RF ADNPGVWAFHC+IE H MGMG++F E + VA +P
Sbjct: 345 NLQDPILKNTVAVHPYGWTAVRFKADNPGVWAFHCYIEAHFFMGMGIVFEEGIHRVANLP 166
Query: 161 NEAVSCG 141
E + CG
Sbjct: 165 PEIMGCG 145
Score = 44.6 bits (91), Expect(2) = 3e-032
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / -3
Query: 431 HPWHLHGHDFWVL 393
HPWHLHGHDFWVL
Sbjct: 432 HPWHLHGHDFWVL 394
>gb|CW462515.1|CW462515 fsbb001f210l06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f210l06, DNA
sequence
Length = 472
Score = 84.0 bits (177), Expect(2) = 7e-032
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = -3 / +3
Query: 560 DVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
DV PPPNPN T D +Y L + VDV +QNAN + N E HPWHL GHDFW L
Sbjct: 96 DVDAPPPNPNATISDGLYRLEFGSVVDVGVQNANMVGGNKWETHPWHLDGHDFWGL 263
Score = 74.4 bits (156), Expect(2) = 7e-032
Identities = 29/46 (63%), Positives = 31/46 (67%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMG 204
NL+DP L+NT PYGWT RF DNPGV FH HIE H MGMG
Sbjct: 312 NLQDPILKNTGAGHPYGWTAGRFKGDNPGVGGFHWHIEGHFFMGMG 449
>gb|CX620500.1|CX620500 GABR1_52_F03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_52_F03_A002 3', mRNA sequence
Length = 389
Score = 122 bits (261), Expect = 5e-027
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ VA++P
Sbjct: 27 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERVAQLP 206
Query: 161 NEAVSCG 141
E CG
Sbjct: 207 KEITGCG 227
>gb|CW339413.1|CW339413 104_840_11485261_116_36138_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485261, DNA
sequence
Length = 245
Score = 107 bits (229), Expect(2) = 9e-026
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLV 174
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ V
Sbjct: 76 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERV 243
Score = 29.0 bits (57), Expect(2) = 9e-026
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 419 LHGHDFWVL 393
LHGHDFWVL
Sbjct: 1 LHGHDFWVL 27
>gb|CW339414.1|CW339414 104_840_11485261_148_36139_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485261, DNA
sequence
Length = 245
Score = 107 bits (229), Expect(2) = 9e-026
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLV 174
NL+DP L+NT + PYGWT LRF ADNPGVWAFHCHIE H MGMG++F E V+ V
Sbjct: 168 NLKDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIESHFFMGMGIVFEEGVERV 1
Score = 29.0 bits (57), Expect(2) = 9e-026
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / -3
Query: 419 LHGHDFWVL 393
LHGHDFWVL
Sbjct: 243 LHGHDFWVL 217
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 595,088,457
Number of Sequences: 832831
Number of extensions: 8015183
Number of successful extensions: 151004
Number of sequences better than 1.0e-020: 33
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18066623463
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)