TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX608247.1|CX608247 ANR1_37_B07.g1_A002 Anaerobic roots ... 183 6e-058
gb|AW746257.1|AW746257 WS1_40_H02.b1_A002 Water-stressed 1 ... 183 6e-058
gb|CX608159.1|CX608159 ANR1_37_B07.b1_A002 Anaerobic roots ... 183 6e-058
gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 ... 183 6e-058
gb|BI139744.1|BI139744 IP1_48_F03.g1_A002 Immature pannicle... 177 4e-056
gb|AW924253.1|AW924253 WS1_51_B07.b1_A002 Water-stressed 1 ... 183 6e-050
gb|CF071236.1|CF071236 FE1_16_E07.b1_A002 Iron-deficient se... 149 4e-048
gb|BI140000.1|BI140000 IP1_48_F03.b1_A002 Immature pannicle... 182 1e-047
gb|CF480395.1|CF480395 POL1_65_B09.g1_A002 Pollen Sorghum b... 155 6e-037
gb|CF488916.1|CF488916 POL1_53_B08.b1_A002 Pollen Sorghum b... 155 6e-037
gb|BE917644.1|BE917644 OV1_6_C09.g1_A002 Ovary 1 (OV1) Sorg... 151 7e-036
gb|BE917721.1|BE917721 OV1_6_C09.b1_A002 Ovary 1 (OV1) Sorg... 151 7e-036
gb|CF480318.1|CF480318 POL1_65_B09.b1_A002 Pollen Sorghum b... 151 1e-035
>gb|CX608247.1|CX608247 ANR1_37_B07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B07_A002 5', mRNA sequence
Length = 543
Score = 183 bits (394), Expect(4) = 6e-058
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL
Sbjct: 74 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 253
Query: 330 LNYNTLEKTETS*VS 286
LNYNTLEKTETS*VS
Sbjct: 254 LNYNTLEKTETS*VS 298
Score = 103 bits (220), Expect(6) = 9e-045
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1 / -3
Query: 286 AHLTCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFR 420
AHLTCLSLLQC+VVEQ LNEVNMGHEH PAAVAEQFQSIQSIPFR
Sbjct: 298 AHLTCLSLLQCIVVEQFLNEVNMGHEHPPAAVAEQFQSIQSIPFR 164
Score = 103 bits (219), Expect(5) = 7e-042
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -1 / +3
Query: 416 KGMLWMLWNCSATAAGECS*PMLTSLRSCSTTTHWRRLRQVK*A 285
KGMLWMLWNCSATAAG CS*PMLTSLR+CSTT HWRRLRQVK*A
Sbjct: 168 KGMLWMLWNCSATAAGGCS*PMLTSLRNCSTTIHWRRLRQVK*A 299
Score = 98.2 bits (208), Expect(4) = 7e-033
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = +3 / -2
Query: 285 CSLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHPLXXXXXXXXXXXXXTCS 464
CSLNLSQSSPV CS*A SQ*GQHGS*A ACSSSGTIP+HPEHPL TCS
Sbjct: 299 CSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGGGRGRGPTCS 120
Query: 465 Q 467
Q
Sbjct: 119 Q 117
Score = 49.2 bits (101), Expect(5) = 7e-042
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -2 / +1
Query: 511 EDDHTGALLHLRQGDWEQV 455
EDDH GALLHLRQGDWEQV
Sbjct: 73 EDDHPGALLHLRQGDWEQV 129
Score = 48.3 bits (99), Expect(6) = 9e-045
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -1
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 129 HLFPITLPQVKQRTGMIIF 73
Score = 36.3 bits (73), Expect(4) = 7e-033
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 466 NHLAAGEAAHRYDHL 510
NHLAAGEAAHR DHL
Sbjct: 118 NHLAAGEAAHRDDHL 74
Score = 35.0 bits (70), Expect(4) = 6e-058
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +1
Query: 291 VSKHIML*KHYCFVVS 244
+S+HIML KHYCFVVS
Sbjct: 289 LSEHIMLQKHYCFVVS 336
Score = 34.5 bits (69), Expect(4) = 6e-058
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / +2
Query: 139 CMLHLCYDVGDFNRYN 92
CMLHLC+DVG F YN
Sbjct: 431 CMLHLCHDVGYFK*YN 478
Score = 33.6 bits (67), Expect(6) = 9e-045
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +2 / -3
Query: 86 LAVISIKISNIVA*MQHAL 142
+ VIS+KISN++A*MQHA+
Sbjct: 484 VTVISLKISNVMA*MQHAI 428
Score = 33.1 bits (66), Expect(6) = 9e-045
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2 / -2
Query: 242 YDTTKQ*CFQSMIC 283
YDTTKQ*CF SM+C
Sbjct: 338 YDTTKQ*CFWSMMC 297
Score = 31.8 bits (63), Expect(4) = 7e-033
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3 / -1
Query: 93 LYRLKSPTS*HRCNM 137
LY LK PTS HRCNM
Sbjct: 477 LYHLKYPTSWHRCNM 433
Score = 31.3 bits (62), Expect(5) = 7e-042
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +3
Query: 138 ACCIYATMLEILIDIT 91
ACCIYA L+IL DIT
Sbjct: 432 ACCIYAMTLDILSDIT 479
Score = 31.3 bits (62), Expect(5) = 7e-042
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / +2
Query: 299 QVK*ASISCSESTTVS*YH 243
+ * S SCS+STTVS*YH
Sbjct: 281 ETS*VSTSCSKSTTVS*YH 337
Score = 30.9 bits (61), Expect(4) = 7e-033
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 241 I*YYETVVLSEHDML 285
+*YYETVVL EHD+L
Sbjct: 339 L*YYETVVLLEHDVL 295
Score = 29.5 bits (58), Expect(5) = 7e-042
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1 / +1
Query: 224 VVSSLSGFRRGLL*V*TCFCSRAF 153
VV RR +L*V*TCFCS A+
Sbjct: 343 VVCCFLSIRREML*V*TCFCS*AW 414
Score = 29.5 bits (58), Expect(4) = 6e-058
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2 / +2
Query: 226 MLFLLYQDSGEDCCECELAFALE 158
+L+++ SGE C ECE AFA E
Sbjct: 341 VLYVVSYPSGERCFECEHAFAHE 409
Score = 28.1 bits (55), Expect(6) = 9e-045
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1 / -2
Query: 151 LNAREQKQVHTHNNPLLNPDREETTY 228
++A EQK VHT + LL ++ TT+
Sbjct: 416 VHAHEQKHVHTQSISLLMDKKQHTTH 339
Score = 22.6 bits (43), Expect(6) = 9e-045
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / -2
Query: 528 LEPGAGEG 551
LEPGAGEG
Sbjct: 47 LEPGAGEG 24
>gb|AW746257.1|AW746257 WS1_40_H02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 183 bits (394), Expect(4) = 6e-058
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL
Sbjct: 111 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 290
Query: 330 LNYNTLEKTETS*VS 286
LNYNTLEKTETS*VS
Sbjct: 291 LNYNTLEKTETS*VS 335
Score = 103 bits (220), Expect(6) = 6e-045
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1 / -1
Query: 286 AHLTCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFR 420
AHLTCLSLLQC+VVEQ LNEVNMGHEH PAAVAEQFQSIQSIPFR
Sbjct: 335 AHLTCLSLLQCIVVEQFLNEVNMGHEHPPAAVAEQFQSIQSIPFR 201
Score = 103 bits (219), Expect(5) = 6e-042
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -1 / +1
Query: 416 KGMLWMLWNCSATAAGECS*PMLTSLRSCSTTTHWRRLRQVK*A 285
KGMLWMLWNCSATAAG CS*PMLTSLR+CSTT HWRRLRQVK*A
Sbjct: 205 KGMLWMLWNCSATAAGGCS*PMLTSLRNCSTTIHWRRLRQVK*A 336
Score = 98.2 bits (208), Expect(4) = 7e-033
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = +3 / -3
Query: 285 CSLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHPLXXXXXXXXXXXXXTCS 464
CSLNLSQSSPV CS*A SQ*GQHGS*A ACSSSGTIP+HPEHPL TCS
Sbjct: 336 CSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGGGRGRGPTCS 157
Query: 465 Q 467
Q
Sbjct: 156 Q 154
Score = 49.2 bits (101), Expect(5) = 6e-042
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -2 / +2
Query: 511 EDDHTGALLHLRQGDWEQV 455
EDDH GALLHLRQGDWEQV
Sbjct: 110 EDDHPGALLHLRQGDWEQV 166
Score = 48.3 bits (99), Expect(6) = 6e-045
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -2
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 166 HLFPITLPQVKQRTGMIIF 110
Score = 36.3 bits (73), Expect(4) = 7e-033
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 466 NHLAAGEAAHRYDHL 510
NHLAAGEAAHR DHL
Sbjct: 155 NHLAAGEAAHRDDHL 111
Score = 35.0 bits (70), Expect(4) = 6e-058
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +2
Query: 291 VSKHIML*KHYCFVVS 244
+S+HIML KHYCFVVS
Sbjct: 326 LSEHIMLQKHYCFVVS 373
Score = 34.5 bits (69), Expect(4) = 6e-058
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / +3
Query: 139 CMLHLCYDVGDFNRYN 92
CMLHLC+DVG F YN
Sbjct: 468 CMLHLCHDVGYFK*YN 515
Score = 33.6 bits (67), Expect(6) = 6e-045
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +2 / -1
Query: 86 LAVISIKISNIVA*MQHAL 142
+ VIS+KISN++A*MQHA+
Sbjct: 521 VTVISLKISNVMA*MQHAI 465
Score = 33.1 bits (66), Expect(6) = 6e-045
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2 / -3
Query: 242 YDTTKQ*CFQSMIC 283
YDTTKQ*CF SM+C
Sbjct: 375 YDTTKQ*CFWSMMC 334
Score = 31.8 bits (63), Expect(4) = 7e-033
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3 / -2
Query: 93 LYRLKSPTS*HRCNM 137
LY LK PTS HRCNM
Sbjct: 514 LYHLKYPTSWHRCNM 470
Score = 31.3 bits (62), Expect(5) = 6e-042
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 138 ACCIYATMLEILIDIT 91
ACCIYA L+IL DIT
Sbjct: 469 ACCIYAMTLDILSDIT 516
Score = 31.3 bits (62), Expect(5) = 6e-042
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / +3
Query: 299 QVK*ASISCSESTTVS*YH 243
+ * S SCS+STTVS*YH
Sbjct: 318 ETS*VSTSCSKSTTVS*YH 374
Score = 30.9 bits (61), Expect(4) = 7e-033
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 241 I*YYETVVLSEHDML 285
+*YYETVVL EHD+L
Sbjct: 376 L*YYETVVLLEHDVL 332
Score = 29.5 bits (58), Expect(5) = 6e-042
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1 / +2
Query: 224 VVSSLSGFRRGLL*V*TCFCSRAF 153
VV RR +L*V*TCFCS A+
Sbjct: 380 VVCCFLSIRREML*V*TCFCS*AW 451
Score = 29.5 bits (58), Expect(4) = 6e-058
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2 / +3
Query: 226 MLFLLYQDSGEDCCECELAFALE 158
+L+++ SGE C ECE AFA E
Sbjct: 378 VLYVVSYPSGERCFECEHAFAHE 446
Score = 28.1 bits (55), Expect(6) = 6e-045
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1 / -3
Query: 151 LNAREQKQVHTHNNPLLNPDREETTY 228
++A EQK VHT + LL ++ TT+
Sbjct: 453 VHAHEQKHVHTQSISLLMDKKQHTTH 376
Score = 23.1 bits (44), Expect(6) = 6e-045
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3 / -3
Query: 528 LEPGAGEGEGSALLVRSWXXXXRDRA 605
LEPGAGEG L+ ++RA
Sbjct: 84 LEPGAGEGGFGRLVGMEVVNETQERA 7
>gb|CX608159.1|CX608159 ANR1_37_B07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B07_A002 3', mRNA sequence
Length = 532
Score = 183 bits (394), Expect(4) = 6e-058
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL
Sbjct: 76 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 255
Query: 330 LNYNTLEKTETS*VS 286
LNYNTLEKTETS*VS
Sbjct: 256 LNYNTLEKTETS*VS 300
Score = 103 bits (220), Expect(6) = 8e-045
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1 / -2
Query: 286 AHLTCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFR 420
AHLTCLSLLQC+VVEQ LNEVNMGHEH PAAVAEQFQSIQSIPFR
Sbjct: 300 AHLTCLSLLQCIVVEQFLNEVNMGHEHPPAAVAEQFQSIQSIPFR 166
Score = 103 bits (219), Expect(5) = 6e-042
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -1 / +2
Query: 416 KGMLWMLWNCSATAAGECS*PMLTSLRSCSTTTHWRRLRQVK*A 285
KGMLWMLWNCSATAAG CS*PMLTSLR+CSTT HWRRLRQVK*A
Sbjct: 170 KGMLWMLWNCSATAAGGCS*PMLTSLRNCSTTIHWRRLRQVK*A 301
Score = 98.2 bits (208), Expect(4) = 7e-033
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = +3 / -1
Query: 285 CSLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHPLXXXXXXXXXXXXXTCS 464
CSLNLSQSSPV CS*A SQ*GQHGS*A ACSSSGTIP+HPEHPL TCS
Sbjct: 301 CSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGGGRGRGPTCS 122
Query: 465 Q 467
Q
Sbjct: 121 Q 119
Score = 49.2 bits (101), Expect(5) = 6e-042
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -2 / +3
Query: 511 EDDHTGALLHLRQGDWEQV 455
EDDH GALLHLRQGDWEQV
Sbjct: 75 EDDHPGALLHLRQGDWEQV 131
Score = 48.3 bits (99), Expect(6) = 8e-045
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -3
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 131 HLFPITLPQVKQRTGMIIF 75
Score = 36.3 bits (73), Expect(4) = 7e-033
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 466 NHLAAGEAAHRYDHL 510
NHLAAGEAAHR DHL
Sbjct: 120 NHLAAGEAAHRDDHL 76
Score = 35.0 bits (70), Expect(4) = 6e-058
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +3
Query: 291 VSKHIML*KHYCFVVS 244
+S+HIML KHYCFVVS
Sbjct: 291 LSEHIMLQKHYCFVVS 338
Score = 34.5 bits (69), Expect(4) = 6e-058
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / +1
Query: 139 CMLHLCYDVGDFNRYN 92
CMLHLC+DVG F YN
Sbjct: 433 CMLHLCHDVGYFK*YN 480
Score = 33.6 bits (67), Expect(6) = 8e-045
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +2 / -2
Query: 86 LAVISIKISNIVA*MQHAL 142
+ VIS+KISN++A*MQHA+
Sbjct: 486 VTVISLKISNVMA*MQHAI 430
Score = 33.1 bits (66), Expect(6) = 8e-045
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2 / -1
Query: 242 YDTTKQ*CFQSMIC 283
YDTTKQ*CF SM+C
Sbjct: 340 YDTTKQ*CFWSMMC 299
Score = 31.8 bits (63), Expect(4) = 7e-033
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3 / -3
Query: 93 LYRLKSPTS*HRCNM 137
LY LK PTS HRCNM
Sbjct: 479 LYHLKYPTSWHRCNM 435
Score = 31.3 bits (62), Expect(5) = 6e-042
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +2
Query: 138 ACCIYATMLEILIDIT 91
ACCIYA L+IL DIT
Sbjct: 434 ACCIYAMTLDILSDIT 481
Score = 31.3 bits (62), Expect(5) = 6e-042
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / +1
Query: 299 QVK*ASISCSESTTVS*YH 243
+ * S SCS+STTVS*YH
Sbjct: 283 ETS*VSTSCSKSTTVS*YH 339
Score = 30.9 bits (61), Expect(4) = 7e-033
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 241 I*YYETVVLSEHDML 285
+*YYETVVL EHD+L
Sbjct: 341 L*YYETVVLLEHDVL 297
Score = 29.5 bits (58), Expect(5) = 6e-042
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1 / +3
Query: 224 VVSSLSGFRRGLL*V*TCFCSRAF 153
VV RR +L*V*TCFCS A+
Sbjct: 345 VVCCFLSIRREML*V*TCFCS*AW 416
Score = 29.5 bits (58), Expect(4) = 6e-058
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2 / +1
Query: 226 MLFLLYQDSGEDCCECELAFALE 158
+L+++ SGE C ECE AFA E
Sbjct: 343 VLYVVSYPSGERCFECEHAFAHE 411
Score = 28.1 bits (55), Expect(6) = 8e-045
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1 / -1
Query: 151 LNAREQKQVHTHNNPLLNPDREETTY 228
++A EQK VHT + LL ++ TT+
Sbjct: 418 VHAHEQKHVHTQSISLLMDKKQHTTH 341
Score = 22.6 bits (43), Expect(6) = 8e-045
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / -1
Query: 528 LEPGAGEG 551
LEPGAGEG
Sbjct: 49 LEPGAGEG 26
>gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 490
Score = 183 bits (394), Expect(4) = 6e-058
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL
Sbjct: 33 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 212
Query: 330 LNYNTLEKTETS*VS 286
LNYNTLEKTETS*VS
Sbjct: 213 LNYNTLEKTETS*VS 257
Score = 103 bits (220), Expect(5) = 9e-043
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1 / -3
Query: 286 AHLTCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFR 420
AHLTCLSLLQC+VVEQ LNEVNMGHEH PAAVAEQFQSIQSIPFR
Sbjct: 257 AHLTCLSLLQCIVVEQFLNEVNMGHEHPPAAVAEQFQSIQSIPFR 123
Score = 103 bits (219), Expect(5) = 4e-042
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -1 / +1
Query: 416 KGMLWMLWNCSATAAGECS*PMLTSLRSCSTTTHWRRLRQVK*A 285
KGMLWMLWNCSATAAG CS*PMLTSLR+CSTT HWRRLRQVK*A
Sbjct: 127 KGMLWMLWNCSATAAGGCS*PMLTSLRNCSTTIHWRRLRQVK*A 258
Score = 98.2 bits (208), Expect(4) = 7e-033
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = +3 / -2
Query: 285 CSLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHPLXXXXXXXXXXXXXTCS 464
CSLNLSQSSPV CS*A SQ*GQHGS*A ACSSSGTIP+HPEHPL TCS
Sbjct: 258 CSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGGGRGRGPTCS 79
Query: 465 Q 467
Q
Sbjct: 78 Q 76
Score = 49.2 bits (101), Expect(5) = 4e-042
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -2 / +2
Query: 511 EDDHTGALLHLRQGDWEQV 455
EDDH GALLHLRQGDWEQV
Sbjct: 32 EDDHPGALLHLRQGDWEQV 88
Score = 48.3 bits (99), Expect(5) = 9e-043
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -1
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 88 HLFPITLPQVKQRTGMIIF 32
Score = 36.3 bits (73), Expect(4) = 7e-033
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 466 NHLAAGEAAHRYDHL 510
NHLAAGEAAHR DHL
Sbjct: 77 NHLAAGEAAHRDDHL 33
Score = 35.0 bits (70), Expect(4) = 6e-058
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +2
Query: 291 VSKHIML*KHYCFVVS 244
+S+HIML KHYCFVVS
Sbjct: 248 LSEHIMLQKHYCFVVS 295
Score = 34.5 bits (69), Expect(4) = 6e-058
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / +3
Query: 139 CMLHLCYDVGDFNRYN 92
CMLHLC+DVG F YN
Sbjct: 390 CMLHLCHDVGYFK*YN 437
Score = 33.6 bits (67), Expect(5) = 9e-043
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +2 / -3
Query: 86 LAVISIKISNIVA*MQHAL 142
+ VIS+KISN++A*MQHA+
Sbjct: 443 VTVISLKISNVMA*MQHAI 387
Score = 33.1 bits (66), Expect(5) = 9e-043
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2 / -2
Query: 242 YDTTKQ*CFQSMIC 283
YDTTKQ*CF SM+C
Sbjct: 297 YDTTKQ*CFWSMMC 256
Score = 31.8 bits (63), Expect(4) = 7e-033
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3 / -1
Query: 93 LYRLKSPTS*HRCNM 137
LY LK PTS HRCNM
Sbjct: 436 LYHLKYPTSWHRCNM 392
Score = 31.3 bits (62), Expect(5) = 4e-042
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 138 ACCIYATMLEILIDIT 91
ACCIYA L+IL DIT
Sbjct: 391 ACCIYAMTLDILSDIT 438
Score = 31.3 bits (62), Expect(5) = 4e-042
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / +3
Query: 299 QVK*ASISCSESTTVS*YH 243
+ * S SCS+STTVS*YH
Sbjct: 240 ETS*VSTSCSKSTTVS*YH 296
Score = 30.9 bits (61), Expect(4) = 7e-033
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 241 I*YYETVVLSEHDML 285
+*YYETVVL EHD+L
Sbjct: 298 L*YYETVVLLEHDVL 254
Score = 29.5 bits (58), Expect(5) = 4e-042
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1 / +2
Query: 224 VVSSLSGFRRGLL*V*TCFCSRAF 153
VV RR +L*V*TCFCS A+
Sbjct: 302 VVCCFLSIRREML*V*TCFCS*AW 373
Score = 29.5 bits (58), Expect(4) = 6e-058
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2 / +3
Query: 226 MLFLLYQDSGEDCCECELAFALE 158
+L+++ SGE C ECE AFA E
Sbjct: 300 VLYVVSYPSGERCFECEHAFAHE 368
Score = 28.1 bits (55), Expect(5) = 9e-043
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1 / -2
Query: 151 LNAREQKQVHTHNNPLLNPDREETTY 228
++A EQK VHT + LL ++ TT+
Sbjct: 375 VHAHEQKHVHTQSISLLMDKKQHTTH 298
>gb|BI139744.1|BI139744 IP1_48_F03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 450
Score = 177 bits (380), Expect(4) = 4e-056
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = -3 / +2
Query: 501 IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNY 322
IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNY
Sbjct: 2 IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNY 181
Query: 321 NTLEKTETS*VS 286
NTLEKTETS*VS
Sbjct: 182 NTLEKTETS*VS 217
Score = 103 bits (220), Expect(5) = 5e-041
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1 / -3
Query: 286 AHLTCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFR 420
AHLTCLSLLQC+VVEQ LNEVNMGHEH PAAVAEQFQSIQSIPFR
Sbjct: 217 AHLTCLSLLQCIVVEQFLNEVNMGHEHPPAAVAEQFQSIQSIPFR 83
Score = 103 bits (219), Expect(5) = 5e-040
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -1 / +3
Query: 416 KGMLWMLWNCSATAAGECS*PMLTSLRSCSTTTHWRRLRQVK*A 285
KGMLWMLWNCSATAAG CS*PMLTSLR+CSTT HWRRLRQVK*A
Sbjct: 87 KGMLWMLWNCSATAAGGCS*PMLTSLRNCSTTIHWRRLRQVK*A 218
Score = 98.2 bits (208), Expect(4) = 6e-031
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = +3 / -2
Query: 285 CSLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHPLXXXXXXXXXXXXXTCS 464
CSLNLSQSSPV CS*A SQ*GQHGS*A ACSSSGTIP+HPEHPL TCS
Sbjct: 218 CSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGGGRGRGPTCS 39
Query: 465 Q 467
Q
Sbjct: 38 Q 36
Score = 41.8 bits (85), Expect(5) = 5e-041
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2 / -1
Query: 455 HLFPITLPQVKQRTGM 502
HLFPITLPQVKQRTGM
Sbjct: 48 HLFPITLPQVKQRTGM 1
Score = 41.4 bits (84), Expect(5) = 5e-040
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -2 / +1
Query: 502 HTGALLHLRQGDWEQV 455
H GALLHLRQGDWEQV
Sbjct: 1 HPGALLHLRQGDWEQV 48
Score = 35.0 bits (70), Expect(4) = 4e-056
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +1
Query: 291 VSKHIML*KHYCFVVS 244
+S+HIML KHYCFVVS
Sbjct: 208 LSEHIMLQKHYCFVVS 255
Score = 34.5 bits (69), Expect(4) = 4e-056
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / +2
Query: 139 CMLHLCYDVGDFNRYN 92
CMLHLC+DVG F YN
Sbjct: 350 CMLHLCHDVGYFK*YN 397
Score = 33.6 bits (67), Expect(5) = 5e-041
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +2 / -3
Query: 86 LAVISIKISNIVA*MQHAL 142
+ VIS+KISN++A*MQHA+
Sbjct: 403 VTVISLKISNVMA*MQHAI 347
Score = 33.1 bits (66), Expect(5) = 5e-041
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2 / -2
Query: 242 YDTTKQ*CFQSMIC 283
YDTTKQ*CF SM+C
Sbjct: 257 YDTTKQ*CFWSMMC 216
Score = 31.8 bits (63), Expect(4) = 6e-031
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3 / -1
Query: 93 LYRLKSPTS*HRCNM 137
LY LK PTS HRCNM
Sbjct: 396 LYHLKYPTSWHRCNM 352
Score = 31.3 bits (62), Expect(5) = 5e-040
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +3
Query: 138 ACCIYATMLEILIDIT 91
ACCIYA L+IL DIT
Sbjct: 351 ACCIYAMTLDILSDIT 398
Score = 31.3 bits (62), Expect(5) = 5e-040
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / +2
Query: 299 QVK*ASISCSESTTVS*YH 243
+ * S SCS+STTVS*YH
Sbjct: 200 ETS*VSTSCSKSTTVS*YH 256
Score = 30.9 bits (61), Expect(4) = 6e-031
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 241 I*YYETVVLSEHDML 285
+*YYETVVL EHD+L
Sbjct: 258 L*YYETVVLLEHDVL 214
Score = 29.5 bits (58), Expect(4) = 6e-031
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1 / -3
Query: 466 NHLAAGEAAHR 498
NHLAAGEAAHR
Sbjct: 37 NHLAAGEAAHR 5
Score = 29.5 bits (58), Expect(5) = 5e-040
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1 / +1
Query: 224 VVSSLSGFRRGLL*V*TCFCSRAF 153
VV RR +L*V*TCFCS A+
Sbjct: 262 VVCCFLSIRREML*V*TCFCS*AW 333
Score = 29.5 bits (58), Expect(4) = 4e-056
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2 / +2
Query: 226 MLFLLYQDSGEDCCECELAFALE 158
+L+++ SGE C ECE AFA E
Sbjct: 260 VLYVVSYPSGERCFECEHAFAHE 328
Score = 28.1 bits (55), Expect(5) = 5e-041
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1 / -2
Query: 151 LNAREQKQVHTHNNPLLNPDREETTY 228
++A EQK VHT + LL ++ TT+
Sbjct: 335 VHAHEQKHVHTQSISLLMDKKQHTTH 258
>gb|AW924253.1|AW924253 WS1_51_B07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 348
Score = 183 bits (394), Expect(2) = 6e-050
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL
Sbjct: 85 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 264
Query: 330 LNYNTLEKTETS*VS 286
LNYNTLEKTETS*VS
Sbjct: 265 LNYNTLEKTETS*VS 309
Score = 103 bits (220), Expect(4) = 9e-036
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1 / -1
Query: 286 AHLTCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFR 420
AHLTCLSLLQC+VVEQ LNEVNMGHEH PAAVAEQFQSIQSIPFR
Sbjct: 309 AHLTCLSLLQCIVVEQFLNEVNMGHEHPPAAVAEQFQSIQSIPFR 175
Score = 103 bits (219), Expect(3) = 2e-034
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -1 / +2
Query: 416 KGMLWMLWNCSATAAGECS*PMLTSLRSCSTTTHWRRLRQVK*A 285
KGMLWMLWNCSATAAG CS*PMLTSLR+CSTT HWRRLRQVK*A
Sbjct: 179 KGMLWMLWNCSATAAGGCS*PMLTSLRNCSTTIHWRRLRQVK*A 310
Score = 98.2 bits (208), Expect(3) = 1e-028
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = +3 / -3
Query: 285 CSLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHPLXXXXXXXXXXXXXTCS 464
CSLNLSQSSPV CS*A SQ*GQHGS*A ACSSSGTIP+HPEHPL TCS
Sbjct: 310 CSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGGGRGRGPTCS 131
Query: 465 Q 467
Q
Sbjct: 130 Q 128
Score = 49.2 bits (101), Expect(3) = 2e-034
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -2 / +3
Query: 511 EDDHTGALLHLRQGDWEQV 455
EDDH GALLHLRQGDWEQV
Sbjct: 84 EDDHPGALLHLRQGDWEQV 140
Score = 48.3 bits (99), Expect(4) = 9e-036
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -2
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 140 HLFPITLPQVKQRTGMIIF 84
Score = 36.3 bits (73), Expect(3) = 1e-028
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 466 NHLAAGEAAHRYDHL 510
NHLAAGEAAHR DHL
Sbjct: 129 NHLAAGEAAHRDDHL 85
Score = 35.0 bits (70), Expect(2) = 6e-050
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +3
Query: 291 VSKHIML*KHYCFVVS 244
+S+HIML KHYCFVVS
Sbjct: 300 LSEHIMLQKHYCFVVS 347
Score = 31.3 bits (62), Expect(3) = 2e-034
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / +1
Query: 299 QVK*ASISCSESTTVS*YH 243
+ * S SCS+STTVS*YH
Sbjct: 292 ETS*VSTSCSKSTTVS*YH 348
Score = 29.9 bits (59), Expect(3) = 1e-028
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1 / -2
Query: 244 *YYETVVLSEHDML 285
*YYETVVL EHD+L
Sbjct: 347 *YYETVVLLEHDVL 306
Score = 29.9 bits (59), Expect(4) = 9e-036
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / -3
Query: 245 DTTKQ*CFQSMIC 283
DTTKQ*CF SM+C
Sbjct: 346 DTTKQ*CFWSMMC 308
Score = 22.6 bits (43), Expect(4) = 9e-036
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / -3
Query: 528 LEPGAGEG 551
LEPGAGEG
Sbjct: 58 LEPGAGEG 35
>gb|CF071236.1|CF071236 FE1_16_E07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_E07_A002 3', mRNA sequence
Length = 422
Score = 149 bits (320), Expect(4) = 4e-048
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = -3 / +3
Query: 471 VIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
VIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*
Sbjct: 3 VIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 182
Query: 291 VS 286
VS
Sbjct: 183 VS 188
Score = 103 bits (220), Expect(4) = 2e-033
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1 / -1
Query: 286 AHLTCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFR 420
AHLTCLSLLQC+VVEQ LNEVNMGHEH PAAVAEQFQSIQSIPFR
Sbjct: 188 AHLTCLSLLQCIVVEQFLNEVNMGHEHPPAAVAEQFQSIQSIPFR 54
Score = 103 bits (219), Expect(4) = 2e-032
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = -1 / +1
Query: 416 KGMLWMLWNCSATAAGECS*PMLTSLRSCSTTTHWRRLRQVK*A 285
KGMLWMLWNCSATAAG CS*PMLTSLR+CSTT HWRRLRQVK*A
Sbjct: 58 KGMLWMLWNCSATAAGGCS*PMLTSLRNCSTTIHWRRLRQVK*A 189
Score = 98.2 bits (208), Expect(3) = 2e-027
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = +3 / -3
Query: 285 CSLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHPLXXXXXXXXXXXXXTCS 464
CSLNLSQSSPV CS*A SQ*GQHGS*A ACSSSGTIP+HPEHPL TCS
Sbjct: 189 CSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGGGRGRGPTCS 10
Query: 465 Q 467
Q
Sbjct: 9 Q 7
Score = 35.0 bits (70), Expect(4) = 4e-048
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +2
Query: 291 VSKHIML*KHYCFVVS 244
+S+HIML KHYCFVVS
Sbjct: 179 LSEHIMLQKHYCFVVS 226
Score = 34.5 bits (69), Expect(4) = 4e-048
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / +3
Query: 139 CMLHLCYDVGDFNRYN 92
CMLHLC+DVG F YN
Sbjct: 321 CMLHLCHDVGYFK*YN 368
Score = 33.6 bits (67), Expect(4) = 2e-033
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +2 / -1
Query: 86 LAVISIKISNIVA*MQHAL 142
+ VIS+KISN++A*MQHA+
Sbjct: 374 VTVISLKISNVMA*MQHAI 318
Score = 33.1 bits (66), Expect(4) = 2e-033
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2 / -3
Query: 242 YDTTKQ*CFQSMIC 283
YDTTKQ*CF SM+C
Sbjct: 228 YDTTKQ*CFWSMMC 187
Score = 31.8 bits (63), Expect(3) = 2e-027
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3 / -2
Query: 93 LYRLKSPTS*HRCNM 137
LY LK PTS HRCNM
Sbjct: 367 LYHLKYPTSWHRCNM 323
Score = 31.3 bits (62), Expect(4) = 2e-032
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 138 ACCIYATMLEILIDIT 91
ACCIYA L+IL DIT
Sbjct: 322 ACCIYAMTLDILSDIT 369
Score = 31.3 bits (62), Expect(4) = 2e-032
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1 / +3
Query: 299 QVK*ASISCSESTTVS*YH 243
+ * S SCS+STTVS*YH
Sbjct: 171 ETS*VSTSCSKSTTVS*YH 227
Score = 30.9 bits (61), Expect(3) = 2e-027
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 241 I*YYETVVLSEHDML 285
+*YYETVVL EHD+L
Sbjct: 229 L*YYETVVLLEHDVL 185
Score = 29.5 bits (58), Expect(4) = 2e-032
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1 / +2
Query: 224 VVSSLSGFRRGLL*V*TCFCSRAF 153
VV RR +L*V*TCFCS A+
Sbjct: 233 VVCCFLSIRREML*V*TCFCS*AW 304
Score = 29.5 bits (58), Expect(4) = 4e-048
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2 / +3
Query: 226 MLFLLYQDSGEDCCECELAFALE 158
+L+++ SGE C ECE AFA E
Sbjct: 231 VLYVVSYPSGERCFECEHAFAHE 299
Score = 28.1 bits (55), Expect(4) = 2e-033
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1 / -3
Query: 151 LNAREQKQVHTHNNPLLNPDREETTY 228
++A EQK VHT + LL ++ TT+
Sbjct: 306 VHAHEQKHVHTQSISLLMDKKQHTTH 229
>gb|BI140000.1|BI140000 IP1_48_F03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 627
Score = 182 bits (391), Expect(2) = 1e-047
Identities = 74/75 (98%), Positives = 75/75 (100%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE+L
Sbjct: 372 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIERL 551
Query: 330 LNYNTLEKTETS*VS 286
LNYNTLEKTETS*VS
Sbjct: 552 LNYNTLEKTETS*VS 596
Score = 102 bits (218), Expect(3) = 9e-032
Identities = 41/44 (93%), Positives = 41/44 (93%)
Frame = -1 / +1
Query: 416 KGMLWMLWNCSATAAGECS*PMLTSLRSCSTTTHWRRLRQVK*A 285
KGMLWMLWNCSATAAG CS*PMLTSLR CSTT HWRRLRQVK*A
Sbjct: 466 KGMLWMLWNCSATAAGGCS*PMLTSLRDCSTTIHWRRLRQVK*A 597
Score = 102 bits (218), Expect(3) = 9e-032
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1 / -2
Query: 286 AHLTCLSLLQCVVVEQLLNEVNMGHEHSPAAVAEQFQSIQSIPFR 420
AHLTCLSLLQC+VVEQ LNEVNMGHEH PAAVAEQFQSIQSIPFR
Sbjct: 596 AHLTCLSLLQCIVVEQSLNEVNMGHEHPPAAVAEQFQSIQSIPFR 462
Score = 98.2 bits (208), Expect(3) = 2e-026
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = +3 / -1
Query: 285 CSLNLSQSSPVCCS*ATSQ*GQHGS*AFACSSSGTIPEHPEHPLXXXXXXXXXXXXXTCS 464
CSLNLSQSSPV CS*A SQ*GQHGS*A ACSSSGTIP+HPEHPL TCS
Sbjct: 597 CSLNLSQSSPVYCS*AISQ*GQHGS*ASACSSSGTIPKHPEHPLPSSRPGGGRGRGPTCS 418
Query: 465 Q 467
Q
Sbjct: 417 Q 415
Score = 49.2 bits (101), Expect(3) = 9e-032
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -2 / +2
Query: 511 EDDHTGALLHLRQGDWEQV 455
EDDH GALLHLRQGDWEQV
Sbjct: 371 EDDHPGALLHLRQGDWEQV 427
Score = 48.3 bits (99), Expect(3) = 9e-032
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / -3
Query: 455 HLFPITLPQVKQRTGMIIF 511
HLFPITLPQVKQRTGMIIF
Sbjct: 427 HLFPITLPQVKQRTGMIIF 371
Score = 36.3 bits (73), Expect(3) = 2e-026
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 466 NHLAAGEAAHRYDHL 510
NHLAAGEAAHR DHL
Sbjct: 416 NHLAAGEAAHRDDHL 372
Score = 29.5 bits (58), Expect(2) = 1e-047
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3 / +2
Query: 291 VSKHIML*KHYCF 253
+S+HIML KHYCF
Sbjct: 587 LSEHIMLQKHYCF 625
Score = 24.9 bits (48), Expect(3) = 9e-032
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / -1
Query: 251 TKQ*CFQSMIC 283
TKQ*CF SM+C
Sbjct: 627 TKQ*CFWSMMC 595
Score = 24.0 bits (46), Expect(3) = 9e-032
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / +3
Query: 299 QVK*ASISCSESTTVS 252
+ * S SCS+STTVS
Sbjct: 579 ETS*VSTSCSKSTTVS 626
Score = 23.1 bits (44), Expect(3) = 2e-026
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / -3
Query: 253 ETVVLSEHDML 285
ETVVL EHD+L
Sbjct: 625 ETVVLLEHDVL 593
>gb|CF480395.1|CF480395 POL1_65_B09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_B09_A002 5', mRNA sequence
Length = 504
Score = 155 bits (333), Expect = 6e-037
Identities = 65/84 (77%), Positives = 68/84 (80%)
Frame = -3 / +1
Query: 555 LPPPQLRVPXXXXXAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYC 376
LP P P AKMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYC
Sbjct: 67 LPLPATGEPILPAAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYC 246
Query: 375 CRRMLMTHVDLIEKLLNYNTLEKT 304
CRRMLMTHVDLIEKLLNYNTLEKT
Sbjct: 247 CRRMLMTHVDLIEKLLNYNTLEKT 318
>gb|CF488916.1|CF488916 POL1_53_B08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_53_B08_A002 3', mRNA sequence
Length = 462
Score = 155 bits (333), Expect = 6e-037
Identities = 65/84 (77%), Positives = 68/84 (80%)
Frame = -3 / +2
Query: 555 LPPPQLRVPXXXXXAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYC 376
LP P P AKMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYC
Sbjct: 11 LPLPATGEPILPAAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYC 190
Query: 375 CRRMLMTHVDLIEKLLNYNTLEKT 304
CRRMLMTHVDLIEKLLNYNTLEKT
Sbjct: 191 CRRMLMTHVDLIEKLLNYNTLEKT 262
>gb|BE917644.1|BE917644 OV1_6_C09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 396
Score = 151 bits (325), Expect = 7e-036
Identities = 63/81 (77%), Positives = 66/81 (81%)
Frame = -3 / +3
Query: 546 PQLRVPXXXXXAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRR 367
P P AKMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRR
Sbjct: 12 PATGEPILPAAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRR 191
Query: 366 MLMTHVDLIEKLLNYNTLEKT 304
MLMTHVDLIEKLLNYNTLEKT
Sbjct: 192 MLMTHVDLIEKLLNYNTLEKT 254
>gb|BE917721.1|BE917721 OV1_6_C09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 480
Score = 151 bits (325), Expect = 7e-036
Identities = 63/81 (77%), Positives = 66/81 (81%)
Frame = -3 / +3
Query: 546 PQLRVPXXXXXAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRR 367
P P AKMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRR
Sbjct: 12 PATGEPILPAAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRR 191
Query: 366 MLMTHVDLIEKLLNYNTLEKT 304
MLMTHVDLIEKLLNYNTLEKT
Sbjct: 192 MLMTHVDLIEKLLNYNTLEKT 254
>gb|CF480318.1|CF480318 POL1_65_B09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_B09_A002 3', mRNA sequence
Length = 399
Score = 151 bits (324), Expect = 1e-035
Identities = 62/76 (81%), Positives = 65/76 (85%)
Frame = -3 / +1
Query: 531 PXXXXXAKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTH 352
P AKMIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRRMLMTH
Sbjct: 10 PILPAAAKMIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRRMLMTH 189
Query: 351 VDLIEKLLNYNTLEKT 304
VDLIEKLLNYNTLEKT
Sbjct: 190 VDLIEKLLNYNTLEKT 237
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 647,673,931
Number of Sequences: 832831
Number of extensions: 7871302
Number of successful extensions: 66353
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17827330437
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)