TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG357146.1|BG357146 OV2_10_D07.b1_A002 Ovary 2 (OV2) Sor... 349 2e-095
gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum m... 327 6e-089
gb|BI140071.1|BI140071 IP1_49_F05.b1_A002 Immature pannicle... 222 2e-057
gb|AW745045.1|AW745045 LG1_386_C01.b1_A002 Light Grown 1 (L... 130 9e-037
gb|BI140457.1|BI140457 IP1_49_F05.b2_A002 Immature pannicle... 153 2e-036
gb|CL179386.1|CL179386 104_388_10895272_148_31909_184 Sorgh... 130 1e-029
gb|CW423526.1|CW423526 fsbb001f133g04k0 Sorghum methylation... 98 3e-029
gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum met... 124 1e-027
gb|BZ695088.1|BZ695088 SP__Ba0057N21.r SP__Ba Sorghum propi... 91 2e-026
gb|CW789437.1|CW789437 SP__Ba0057N21.r SP__Ba Sorghum propi... 91 5e-026
gb|BM325126.1|BM325126 PIC1_40_E09.b1_A002 Pathogen-infecte... 116 3e-025
>gb|BG357146.1|BG357146 OV2_10_D07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 349 bits (756), Expect = 2e-095
Identities = 141/147 (95%), Positives = 145/147 (98%)
Frame = -2 / +1
Query: 442 PKGLYCLGVRLTMXWFKSPELQRKFSDRSPAVQSNLRDNSLYHFCVFSDNILAVSVVVNS 263
PKGLYCLGVRLTM WFKSPELQRKFSDRSP+VQSNLRDNSLYHFCVFSDNILAVSVVVNS
Sbjct: 10 PKGLYCLGVRLTMEWFKSPELQRKFSDRSPSVQSNLRDNSLYHFCVFSDNILAVSVVVNS 189
Query: 262 TAINSRHPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKVEDFTWLNASYVPVLKQ 83
TAINSRHPDKVVFHLVTD+LNYAPMKAWF MNDYRGVTV+IQKVEDFTWLNASYVPVLKQ
Sbjct: 190 TAINSRHPDKVVFHLVTDDLNYAPMKAWFAMNDYRGVTVDIQKVEDFTWLNASYVPVLKQ 369
Query: 82 LQNAATQKFYFSGSGSRGTPIKFRNPK 2
LQNAATQKFYFSGSG+RGTPIKFRNPK
Sbjct: 370 LQNAATQKFYFSGSGNRGTPIKFRNPK 450
Score = 313 bits (678), Expect = 1e-084
Identities = 127/147 (86%), Positives = 135/147 (91%)
Frame = -1 / +3
Query: 443 PKGTLLPWCPVNHGXVQESRASEEVFG*EPSSAEQSEG*QPLSFLCLLRQHPCCFSCC*F 264
PKGTLLPWCP+NHG VQ+S ASE+VF EP SAEQS+G*QPLSFLCLLRQHPCCFSCC F
Sbjct: 9 PKGTLLPWCPINHGMVQKS*ASEKVFRQEPISAEQSKG*QPLSFLCLLRQHPCCFSCCQF 188
Query: 263 YGYKLEAP*QGCFSLSD**VELCSDEGMVWHE*LQRGHCGDTKGGGLYLAQCIVCSRS*T 84
YGYKLEAP*QGCFS SD**+ELCSDEG+V HE*LQR HCG TKGGGL+LAQCI+CSRS*T
Sbjct: 189 YGYKLEAP*QGCFSPSD**LELCSDEGVVCHE*LQRSHCGHTKGGGLHLAQCIICSRS*T 368
Query: 83 ATECCYTEVLLLWQW*SWNTN*IQEPK 3
ATE CY EVLLLWQW*SWNTN*IQEPK
Sbjct: 369 ATERCYPEVLLLWQW*SWNTN*IQEPK 449
Score = 290 bits (627), Expect = 1e-077
Identities = 126/147 (85%), Positives = 133/147 (90%)
Frame = +2 / -2
Query: 2 LWVPEFNWCSTTTTAREVELLCSSIL*LFKNGNIRCIEPGKVLHLLYLHSDPSVVIHAKP 181
LWVPEFNWCST TTAREVELL SS+L*LFKNGNI CIEPG+VLHLLY+HSD SVVIH KP
Sbjct: 450 LWVPEFNWCSTITTAREVELLGSSVL*LFKNGNI*CIEPGEVLHLLYVHSDSSVVIHGKP 271
Query: 182 CLHRSIVQLISH*VKNNLVRVPRVYSRRINNN*NSKDVV*EDTKMIEAVIPQIALHCWAP 361
LHRSIVQ+ISH*VKNNLVRVPRVYSRRI+NN*NSKDVV*EDT+MIEAVIP IALH WAP
Sbjct: 270 RLHRSIVQVISH*VKNNLVRVPRVYSRRIDNN*NSKDVV*EDTEMIEAVIP*IALH*WAP 91
Query: 362 IRKLPLKLGTLEPXHG*PDTKAIKSLW 442
+ KL LKL T EP HG* DTKAIKSLW
Sbjct: 90 V*KLSLKLRTFEPFHG*SDTKAIKSLW 10
Score = 230 bits (496), Expect(2) = 3e-063
Identities = 102/107 (95%), Positives = 104/107 (97%)
Frame = +3 / -3
Query: 3 FGFLNLIGVPRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTPL*SFMPNH 182
FGFLNLIGVPRLPLPEK*NF VAAFCSCLRTGTYDALSQVKSSTFC+STVTPL*SFM NH
Sbjct: 449 FGFLNLIGVPRLPLPEK*NFWVAAFCSCLRTGTYDALSQVKSSTFCMSTVTPL*SFMANH 270
Query: 183 AFIGA*FNSSVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 323
AFIGA*F SSVT+*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R
Sbjct: 269 AFIGA*FKSSVTR*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 129
Score = 171 bits (369), Expect(2) = 4e-060
Identities = 71/96 (73%), Positives = 74/96 (77%)
Frame = +1 / -1
Query: 157 LCSHSCQTMPXXXXXXXXXXXXXKQPCQGASSL*P*N*QQLKQQGCCLRRHKNDRGCYPS 336
LCSHS QT P KQPCQGASSL*P*N*QQLKQQGCCLRRH+NDRGCYP
Sbjct: 295 LCSHSWQTTPSSEHSSSHQSLGEKQPCQGASSL*P*N*QQLKQQGCCLRRHRNDRGCYPL 116
Query: 337 DCSALLGSYPKTSSEARDS*TXPWLTGHQGNKVPLG 444
DCSAL+GS KT SEA+D *T PWL GHQGNKVPLG
Sbjct: 115 DCSALMGSCLKTFSEAQDF*TIPWLIGHQGNKVPLG 8
Score = 138 bits (296), Expect(2) = 2e-051
Identities = 60/70 (85%), Positives = 62/70 (88%)
Frame = -3 / +2
Query: 210 MS*TMLR*RHGLA*MTTEGSLWRYKRWRTLPGSMHRMFPFLNSYRMLLHRSSTSLAVVVV 31
M+*TMLR*R GL *MTTE SLW YKRWRT PGSMH MFPFLNSYR LL RSSTSLAVV+V
Sbjct: 242 MT*TMLR*RRGLP*MTTEESLWTYKRWRTSPGSMHHMFPFLNSYRTLLPRSSTSLAVVIV 421
Query: 30 EHQLNSGTQS 1
EHQLNSGTQS
Sbjct: 422 EHQLNSGTQS 451
Score = 85.4 bits (180), Expect(2) = 2e-051
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = -3 / +2
Query: 444 SQRDFIALVSG*PWXGSRVPSFRGSFRIGAQQCRAI*GITASIIFVSSQ 298
+QRDFIALVS *PW GS+V SFR SF+ GA QCRAI*GITASII VSSQ
Sbjct: 8 AQRDFIALVSD*PWNGSKVLSFRESFQTGAHQCRAI*GITASIISVSSQ 154
Score = 80.8 bits (170), Expect(2) = 4e-060
Identities = 37/40 (92%), Positives = 37/40 (92%)
Frame = +1 / -1
Query: 1 TLGS*I*LVFHDYHCQRSRTSV*QHSVAV*EREHTMH*AR 120
TLGS*I*LVFHDYHCQRSRTS *Q SVAV*EREH MH*AR
Sbjct: 451 TLGS*I*LVFHDYHCQRSRTSG*QRSVAV*EREHMMH*AR 332
Score = 33.1 bits (66), Expect(2) = 3e-063
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3 / -3
Query: 405 MVNRTPRQ*SPFG 443
MVNRTPRQ*SPFG
Sbjct: 47 MVNRTPRQ*SPFG 9
>gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500694, DNA
sequence
Length = 776
Score = 327 bits (709), Expect = 6e-089
Identities = 134/141 (95%), Positives = 138/141 (97%)
Frame = -2 / +3
Query: 424 LGVRLTMXWFKSPELQRKFSDRSPAVQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSR 245
L VRLTM WFKSPELQRKFSDRSP+VQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSR
Sbjct: 3 LVVRLTMEWFKSPELQRKFSDRSPSVQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSR 182
Query: 244 HPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAAT 65
HPDKVVFHLVTD+LNYAPMKAWF MNDYRGVTV+IQKVEDFTWLNASYVPVLKQLQNAAT
Sbjct: 183 HPDKVVFHLVTDDLNYAPMKAWFAMNDYRGVTVDIQKVEDFTWLNASYVPVLKQLQNAAT 362
Query: 64 QKFYFSGSGSRGTPIKFRNPK 2
QKFYFSGSG+RGTPIKFRNPK
Sbjct: 363 QKFYFSGSGNRGTPIKFRNPK 425
Score = 295 bits (638), Expect = 4e-079
Identities = 121/141 (85%), Positives = 128/141 (90%)
Frame = -1 / +2
Query: 425 PWCPVNHGXVQESRASEEVFG*EPSSAEQSEG*QPLSFLCLLRQHPCCFSCC*FYGYKLE 246
P CP+NHG VQES ASE+VF EP SAEQS+G*QPLSFLCLLRQHPCCFSCC FYGYKLE
Sbjct: 2 PCCPINHGMVQES*ASEKVFRQEPISAEQSKG*QPLSFLCLLRQHPCCFSCCQFYGYKLE 181
Query: 245 AP*QGCFSLSD**VELCSDEGMVWHE*LQRGHCGDTKGGGLYLAQCIVCSRS*TATECCY 66
AP*QGCFS SD**+ELCSDEG+V HE*LQR HCG TKGGGL+LAQCI+CSRS*TATE CY
Sbjct: 182 AP*QGCFSPSD**LELCSDEGVVCHE*LQRSHCGHTKGGGLHLAQCIICSRS*TATERCY 361
Query: 65 TEVLLLWQW*SWNTN*IQEPK 3
EVLLLWQW*SWNTN*IQEPK
Sbjct: 362 PEVLLLWQW*SWNTN*IQEPK 424
Score = 275 bits (594), Expect = 4e-073
Identities = 120/141 (85%), Positives = 127/141 (90%)
Frame = +2 / -1
Query: 2 LWVPEFNWCSTTTTAREVELLCSSIL*LFKNGNIRCIEPGKVLHLLYLHSDPSVVIHAKP 181
LWVPEFNWCST TTAREVELL SS+L*LFKNGNI CIEPG+VLHLLY+HSD SVVIH KP
Sbjct: 425 LWVPEFNWCSTITTAREVELLGSSVL*LFKNGNI*CIEPGEVLHLLYVHSDSSVVIHGKP 246
Query: 182 CLHRSIVQLISH*VKNNLVRVPRVYSRRINNN*NSKDVV*EDTKMIEAVIPQIALHCWAP 361
LHRSIVQ+ISH*VKNNLVRVPRVYSRRI+NN*NSKDVV*EDT+MIEAVIP IALH WAP
Sbjct: 245 RLHRSIVQVISH*VKNNLVRVPRVYSRRIDNN*NSKDVV*EDTEMIEAVIP*IALH*WAP 66
Query: 362 IRKLPLKLGTLEPXHG*PDTK 424
+ KL LKL TLEP HG* D K
Sbjct: 65 V*KLSLKLRTLEPFHG*SDNK 3
Score = 230 bits (496), Expect = 1e-059
Identities = 102/107 (95%), Positives = 104/107 (97%)
Frame = +3 / -2
Query: 3 FGFLNLIGVPRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTPL*SFMPNH 182
FGFLNLIGVPRLPLPEK*NF VAAFCSCLRTGTYDALSQVKSSTFC+STVTPL*SFM NH
Sbjct: 424 FGFLNLIGVPRLPLPEK*NFWVAAFCSCLRTGTYDALSQVKSSTFCMSTVTPL*SFMANH 245
Query: 183 AFIGA*FNSSVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 323
AFIGA*F SSVT+*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R
Sbjct: 244 AFIGA*FKSSVTR*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 104
Score = 156 bits (335), Expect(2) = 2e-055
Identities = 65/90 (72%), Positives = 68/90 (75%)
Frame = +1 / -3
Query: 157 LCSHSCQTMPXXXXXXXXXXXXXKQPCQGASSL*P*N*QQLKQQGCCLRRHKNDRGCYPS 336
LCSHS QT P KQPCQGASSL*P*N*QQLKQQGCCLRRH+NDRGCYP
Sbjct: 270 LCSHSWQTTPSSEHSSSHQSLGEKQPCQGASSL*P*N*QQLKQQGCCLRRHRNDRGCYPL 91
Query: 337 DCSALLGSYPKTSSEARDS*TXPWLTGHQG 426
DCSAL+GS KT SEA+DS*T PWL G QG
Sbjct: 90 DCSALMGSCLKTFSEAQDS*TIPWLIGQQG 1
Score = 138 bits (296), Expect(2) = 8e-048
Identities = 60/70 (85%), Positives = 62/70 (88%)
Frame = -3 / +1
Query: 210 MS*TMLR*RHGLA*MTTEGSLWRYKRWRTLPGSMHRMFPFLNSYRMLLHRSSTSLAVVVV 31
M+*TMLR*R GL *MTTE SLW YKRWRT PGSMH MFPFLNSYR LL RSSTSLAVV+V
Sbjct: 217 MT*TMLR*RRGLP*MTTEESLWTYKRWRTSPGSMHHMFPFLNSYRTLLPRSSTSLAVVIV 396
Query: 30 EHQLNSGTQS 1
EHQLNSGTQS
Sbjct: 397 EHQLNSGTQS 426
Score = 80.8 bits (170), Expect(2) = 2e-055
Identities = 37/40 (92%), Positives = 37/40 (92%)
Frame = +1 / -3
Query: 1 TLGS*I*LVFHDYHCQRSRTSV*QHSVAV*EREHTMH*AR 120
TLGS*I*LVFHDYHCQRSRTS *Q SVAV*EREH MH*AR
Sbjct: 426 TLGS*I*LVFHDYHCQRSRTSG*QRSVAV*EREHMMH*AR 307
Score = 73.0 bits (153), Expect(2) = 8e-048
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = -3 / +1
Query: 426 ALVSG*PWXGSRVPSFRGSFRIGAQQCRAI*GITASIIFVSSQ 298
AL+S *PW GSRV SFR SF+ GA QCRAI*GITASII VSSQ
Sbjct: 1 ALLSD*PWNGSRVLSFRESFQTGAHQCRAI*GITASIISVSSQ 129
>gb|BI140071.1|BI140071 IP1_49_F05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 627
Score = 222 bits (480), Expect = 2e-057
Identities = 94/107 (87%), Positives = 96/107 (89%)
Frame = -2 / +1
Query: 514 SLXEKSKVXXXKXTXXXXIAAEELPKGLYCLGVRLTMXWFKSPELQRKFSDRSPAVQSNL 335
SL EKSK K T IAAEELPKGLYCLGVRLTM WFKSPELQRKFSDRSP+VQSNL
Sbjct: 307 SLEEKSKAEADKSTKYGQIAAEELPKGLYCLGVRLTMEWFKSPELQRKFSDRSPSVQSNL 486
Query: 334 RDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYA 194
RDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTD+LNYA
Sbjct: 487 RDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDDLNYA 627
Score = 204 bits (439), Expect = 1e-051
Identities = 85/107 (79%), Positives = 91/107 (85%)
Frame = -1 / +3
Query: 515 VPRXEVES*XXEXHXXXXDCC*GAPKGTLLPWCPVNHGXVQESRASEEVFG*EPSSAEQS 336
VPR EVES* + H DC *GAPKGTLLPWCP+NHG VQ+S ASE+VF EP SAEQS
Sbjct: 306 VPRGEVES*GRQEHKIWPDCS*GAPKGTLLPWCPINHGMVQKS*ASEKVFRQEPISAEQS 485
Query: 335 EG*QPLSFLCLLRQHPCCFSCC*FYGYKLEAP*QGCFSLSD**VELC 195
+G*QPLSFLCLLRQHPCCFSCC FYGYKLEAP*QGCFS SD**+ELC
Sbjct: 486 KG*QPLSFLCLLRQHPCCFSCCQFYGYKLEAP*QGCFSPSD**LELC 626
Score = 182 bits (392), Expect = 3e-045
Identities = 84/107 (78%), Positives = 89/107 (83%)
Frame = +2 / -1
Query: 194 SIVQLISH*VKNNLVRVPRVYSRRINNN*NSKDVV*EDTKMIEAVIPQIALHCWAPIRKL 373
SIVQ+ISH*VKNNLVRVPRVYSRRI+NN*NSKDVV*EDT+MIEAVIP IALH WAP+ KL
Sbjct: 627 SIVQVISH*VKNNLVRVPRVYSRRIDNN*NSKDVV*EDTEMIEAVIP*IALH*WAPV*KL 448
Query: 374 PLKLGTLEPXHG*PDTKAIKSLWELLSSNXXXXCAFXXXNFRLLX*G 514
LKL T EP HG* DTKAIKSLWELLS N CA +FRLL *G
Sbjct: 447 SLKLRTFEPFHG*SDTKAIKSLWELLSCNLAIFCALVCLSFRLLL*G 307
Score = 180 bits (387), Expect = 2e-044
Identities = 76/96 (79%), Positives = 79/96 (82%)
Frame = +1 / -3
Query: 226 KQPCQGASSL*P*N*QQLKQQGCCLRRHKNDRGCYPSDCSALLGSYPKTSSEARDS*TXP 405
KQPCQGASSL*P*N*QQLKQQGCCLRRH+NDRGCYP DCSAL+GS KT SEA+D *T P
Sbjct: 595 KQPCQGASSL*P*N*QQLKQQGCCLRRHRNDRGCYPLDCSALMGSCLKTFSEAQDF*TIP 416
Query: 406 WLTGHQGNKVPLGAPQQQSXXXXCXSXXQLSTSXLG 513
WL GHQGNKVPLGAPQ QS C QLSTS LG
Sbjct: 415 WLIGHQGNKVPLGAPQLQSGHILCSCLPQLSTSPLG 308
Score = 105 bits (225), Expect = 3e-022
Identities = 52/72 (72%), Positives = 54/72 (75%)
Frame = -3 / +2
Query: 513 P*XRSRKLXXXXAXXXXXLLLRSSQRDFIALVSG*PWXGSRVPSFRGSFRIGAQQCRAI* 334
P* RSRKL A L LRSSQRDFIALVS *PW GS+V SFR SF+ GA QCRAI*
Sbjct: 308 P*RRSRKLRQTRAQNMARLQLRSSQRDFIALVSD*PWNGSKVLSFRESFQTGAHQCRAI* 487
Query: 333 GITASIIFVSSQ 298
GITASII VSSQ
Sbjct: 488 GITASIISVSSQ 523
Score = 87.2 bits (184), Expect(2) = 2e-024
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +3 / -2
Query: 195 A*FNSSVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 323
A*F SSVT+*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R
Sbjct: 626 A*FKSSVTR*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 498
Score = 46.0 bits (94), Expect(2) = 2e-024
Identities = 22/37 (59%), Positives = 22/37 (59%)
Frame = +3 / -2
Query: 405 MVNRTPRQ*SPFGSSSAAIXXXXVXXXXXXXXXXXRD 515
MVNRTPRQ*SPFGSSSAAI V RD
Sbjct: 416 MVNRTPRQ*SPFGSSSAAIWPYFVLLSASAFDFSSRD 306
>gb|AW745045.1|AW745045 LG1_386_C01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 534
Score = 130 bits (278), Expect(2) = 9e-037
Identities = 45/84 (53%), Positives = 67/84 (79%)
Frame = -2 / +1
Query: 343 SNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMND 164
+ L DN+LYHFC+FSDN+LA SVVVNST N+ HP ++VFH+VTD +++ M WF +ND
Sbjct: 283 TRLVDNNLYHFCIFSDNVLATSVVVNSTVSNANHPQQLVFHVVTDRIHFGAMSTWFLLND 462
Query: 163 YRGVTVEIQKVEDFTWLNASYVPV 92
++G TVE++ +++F+WLN+S P+
Sbjct: 463 FKGCTVEVRCIDEFSWLNSSSSPL 534
Score = 44.1 bits (90), Expect(2) = 9e-037
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -2 / +1
Query: 514 SLXEKSKVXXXKXTXXXXIAAEELPKGLYCLGVRLTMXWFKSPE 383
+L E++K + +AAE PK L+CL V+LT W ++P+
Sbjct: 118 ALEERAKAAIVQSAEFGQLAAESFPKNLHCLTVKLTEEWLRNPK 249
>gb|BI140457.1|BI140457 IP1_49_F05.b2_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 535
Score = 153 bits (328), Expect = 2e-036
Identities = 64/76 (84%), Positives = 65/76 (85%)
Frame = -2 / +1
Query: 514 SLXEKSKVXXXKXTXXXXIAAEELPKGLYCLGVRLTMXWFKSPELQRKFSDRSPAVQSNL 335
SL EKSK K T IAAEELPKGLYCLGVRLTM WFKSPELQRKFSDRSP+VQSNL
Sbjct: 307 SLEEKSKAEADKSTKYGQIAAEELPKGLYCLGVRLTMEWFKSPELQRKFSDRSPSVQSNL 486
Query: 334 RDNSLYHFCVFSDNIL 287
RDNSLYHFCVFSDNIL
Sbjct: 487 RDNSLYHFCVFSDNIL 534
Score = 137 bits (294), Expect = 1e-031
Identities = 56/76 (73%), Positives = 59/76 (77%)
Frame = +1 / -1
Query: 286 QGCCLRRHKNDRGCYPSDCSALLGSYPKTSSEARDS*TXPWLTGHQGNKVPLGAPQQQSX 465
QGCCLRRH+NDRGCYP DCSAL+GS KT SEA+D *T PWL GHQGNKVPLGAPQ QS
Sbjct: 535 QGCCLRRHRNDRGCYPLDCSALMGSCLKTFSEAQDF*TIPWLIGHQGNKVPLGAPQLQSG 356
Query: 466 XXXCXSXXQLSTSXLG 513
C QLSTS LG
Sbjct: 355 HILCSCLPQLSTSPLG 308
Score = 134 bits (287), Expect = 1e-030
Identities = 57/76 (75%), Positives = 62/76 (81%)
Frame = -1 / +3
Query: 515 VPRXEVES*XXEXHXXXXDCC*GAPKGTLLPWCPVNHGXVQESRASEEVFG*EPSSAEQS 336
VPR EVES* + H DC *GAPKGTLLPWCP+NHG VQ+S ASE+VF EP SAEQS
Sbjct: 306 VPRGEVES*GRQEHKIWPDCS*GAPKGTLLPWCPINHGMVQKS*ASEKVFRQEPISAEQS 485
Query: 335 EG*QPLSFLCLLRQHP 288
+G*QPLSFLCLLRQHP
Sbjct: 486 KG*QPLSFLCLLRQHP 533
Score = 119 bits (254), Expect = 3e-026
Identities = 55/76 (72%), Positives = 58/76 (76%)
Frame = +2 / -2
Query: 287 KDVV*EDTKMIEAVIPQIALHCWAPIRKLPLKLGTLEPXHG*PDTKAIKSLWELLSSNXX 466
KDVV*EDT+MIEAVIP IALH WAP+ KL LKL T EP HG* DTKAIKSLWELLS N
Sbjct: 534 KDVV*EDTEMIEAVIP*IALH*WAPV*KLSLKLRTFEPFHG*SDTKAIKSLWELLSCNLA 355
Query: 467 XXCAFXXXNFRLLX*G 514
CA +FRLL *G
Sbjct: 354 IFCALVCLSFRLLL*G 307
Score = 105 bits (225), Expect = 3e-022
Identities = 52/72 (72%), Positives = 54/72 (75%)
Frame = -3 / +2
Query: 513 P*XRSRKLXXXXAXXXXXLLLRSSQRDFIALVSG*PWXGSRVPSFRGSFRIGAQQCRAI* 334
P* RSRKL A L LRSSQRDFIALVS *PW GS+V SFR SF+ GA QCRAI*
Sbjct: 308 P*RRSRKLRQTRAQNMARLQLRSSQRDFIALVSD*PWNGSKVLSFRESFQTGAHQCRAI* 487
Query: 333 GITASIIFVSSQ 298
GITASII VSSQ
Sbjct: 488 GITASIISVSSQ 523
>gb|CL179386.1|CL179386 104_388_10895272_148_31909_184 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10895272, DNA
sequence
Length = 735
Score = 130 bits (279), Expect = 1e-029
Identities = 49/99 (49%), Positives = 71/99 (71%)
Frame = -2 / -3
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMN 167
+ L D SLYH+ +FSDN+LA SVVV ST N+ P+K VFH+VTD LN+A MK WF +
Sbjct: 466 KEKLEDRSLYHYAIFSDNVLAASVVVRSTVTNANEPEKHVFHIVTDRLNFAAMKMWFITH 287
Query: 166 DYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYF 50
+ TV ++ +++F WLN+SY VL+QL++A +++YF
Sbjct: 286 PPQLATVHVENIDNFKWLNSSYCSVLRQLESARLKEYYF 170
>gb|CW423526.1|CW423526 fsbb001f133g04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f133g04, DNA
sequence
Length = 598
Score = 98.2 bits (208), Expect(2) = 3e-029
Identities = 36/70 (51%), Positives = 52/70 (74%)
Frame = -2 / -1
Query: 259 AINSRHPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKVEDFTWLNASYVPVLKQL 80
AIN + P+K VFHLVTD+LN+ M WF +N T+ ++ V+DF WLN+SY PVL+QL
Sbjct: 376 AINFQEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSYCPVLRQL 197
Query: 79 QNAATQKFYF 50
++AA +++YF
Sbjct: 196 ESAAMREYYF 167
Score = 51.0 bits (105), Expect(2) = 3e-029
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = -2 / -3
Query: 340 NLRDNSLYHFCVFSDNILAVSVVVNSTAINSR 245
NL + LYH+ +FSDN+LA SVVVNST +N++
Sbjct: 563 NLENPDLYHYALFSDNVLAASVVVNSTIMNAK 468
>gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525284, DNA
sequence
Length = 432
Score = 124 bits (265), Expect = 1e-027
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = -2 / -2
Query: 157 GVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRGTPIKFRNPK 2
GVTV+IQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSG+RGTPIKFRNPK
Sbjct: 431 GVTVDIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGNRGTPIKFRNPK 276
Score = 121 bits (259), Expect = 7e-027
Identities = 50/52 (96%), Positives = 51/52 (98%)
Frame = +3 / +1
Query: 3 FGFLNLIGVPRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTP 158
FGFLNLIGVPRLPLPEK*NF VAAFCSCLRTGTYDALSQVKSSTFC+STVTP
Sbjct: 277 FGFLNLIGVPRLPLPEK*NFWVAAFCSCLRTGTYDALSQVKSSTFCMSTVTP 432
Score = 118 bits (252), Expect = 7e-026
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = -1 / -1
Query: 158 RGHCGDTKGGGLYLAQCIVCSRS*TATECCYTEVLLLWQW*SWNTN*IQEPK 3
R HCG TKGGGL+LAQCI+CSRS*TATE CY EVLLLWQW*SWNTN*IQEPK
Sbjct: 432 RSHCGHTKGGGLHLAQCIICSRS*TATERCYPEVLLLWQW*SWNTN*IQEPK 277
Score = 112 bits (240), Expect = 3e-024
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +2 / +3
Query: 2 LWVPEFNWCSTTTTAREVELLCSSIL*LFKNGNIRCIEPGKVLHLLYLHSD 154
LWVPEFNWCST TTAREVELL SS+L*LFKNGNI CIEPG+VLHLLY+HSD
Sbjct: 276 LWVPEFNWCSTITTAREVELLGSSVL*LFKNGNI*CIEPGEVLHLLYVHSD 428
Score = 111 bits (236), Expect = 1e-023
Identities = 45/51 (88%), Positives = 46/51 (90%)
Frame = -3 / -3
Query: 153 SLWRYKRWRTLPGSMHRMFPFLNSYRMLLHRSSTSLAVVVVEHQLNSGTQS 1
SLW YKRWRT PGSMH MFPFLNSYR LL RSSTSLAVV+VEHQLNSGTQS
Sbjct: 427 SLWTYKRWRTSPGSMHHMFPFLNSYRTLLPRSSTSLAVVIVEHQLNSGTQS 275
>gb|BZ695088.1|BZ695088 SP__Ba0057N21.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0057N21 3', DNA sequence
Length = 1000
Score = 91.3 bits (193), Expect(2) = 2e-026
Identities = 35/66 (53%), Positives = 46/66 (69%)
Frame = -2 / -3
Query: 247 RHPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAA 68
+HP VFH+VTD+LNYAPM+ WF N T+E+Q + +FTWLN SY PVLKQL + +
Sbjct: 578 QHPSDHVFHIVTDKLNYAPMRMWFLSNPPGKATIEVQHIGEFTWLNDSYSPVLKQLGSPS 399
Query: 67 TQKFYF 50
+YF
Sbjct: 398 MIDYYF 381
Score = 48.3 bits (99), Expect(2) = 2e-026
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = -2 / -2
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSR 245
Q L LYH+ +FSDNILA +VVVNST +N++
Sbjct: 762 QQKLIXPKLYHYALFSDNILATAVVVNSTVLNAK 661
>gb|CW789437.1|CW789437 SP__Ba0057N21.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0057N21 3', DNA sequence
Length = 714
Score = 91.3 bits (193), Expect(2) = 5e-026
Identities = 35/66 (53%), Positives = 46/66 (69%)
Frame = -2 / -2
Query: 247 RHPDKVVFHLVTDELNYAPMKAWFGMNDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAA 68
+HP VFH+VTD+LNYAPM+ WF N T+E+Q + +FTWLN SY PVLKQL + +
Sbjct: 548 QHPSDHVFHIVTDKLNYAPMRMWFLSNPPGKATIEVQHIGEFTWLNDSYSPVLKQLGSPS 369
Query: 67 TQKFYF 50
+YF
Sbjct: 368 MIDYYF 351
Score = 46.9 bits (96), Expect(2) = 5e-026
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = -2 / -1
Query: 322 LYHFCVFSDNILAVSVVVNSTAINSR 245
LYH+ +FSDNILA +VVVNST +N++
Sbjct: 708 LYHYALFSDNILATAVVVNSTVLNAK 631
>gb|BM325126.1|BM325126 PIC1_40_E09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 630
Score = 116 bits (247), Expect = 3e-025
Identities = 44/79 (55%), Positives = 58/79 (73%)
Frame = -2 / +2
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMN 167
Q L + LYH+ +FSDNILA +VVVNST +N++HP VFH+VTD+LNYAPM+ WF N
Sbjct: 392 QQKLINPKLYHYALFSDNILATAVVVNSTVLNAKHPSDHVFHIVTDKLNYAPMRMWFLSN 571
Query: 166 DYRGVTVEIQKVEDFTWLN 110
T+E+Q + +FTWLN
Sbjct: 572 PPGRATIEVQHIGEFTWLN 628
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 575,979,182
Number of Sequences: 832831
Number of extensions: 7488307
Number of successful extensions: 90991
Number of sequences better than 1.0e-020: 13
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 14118288534
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)