TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW249841.1|CW249841 104_711_11223062_116_35044_051 Sorgh... 187 6e-052
gb|CN146262.1|CN146262 WOUND1_39_D11.b1_A002 Wounded leaves... 188 5e-051
gb|CW318949.1|CW318949 104_811_11474228_148_35883_074 Sorgh... 188 5e-051
gb|BZ628759.1|BZ628759 ih62b02.g1 WGS-SbicolorF (DH5a methy... 188 5e-051
gb|BZ628758.1|BZ628758 ih62b02.b1 WGS-SbicolorF (DH5a methy... 188 5e-051
gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorgh... 182 9e-051
gb|CX612764.1|CX612764 GABR1_4_G09.b1_A002 GA- or brassinol... 188 2e-050
gb|BG241494.1|BG241494 RHIZ2_50_A05.g1_A003 Rhizome2 (RHIZ2... 187 1e-049
gb|CD236128.1|CD236128 SS1_32_B09.b1_A012 Salt-stressed see... 188 9e-047
gb|CL177459.1|CL177459 104_384_10893845_116_31916_293 Sorgh... 182 3e-045
gb|BG101966.1|BG101966 RHIZ2_22_A05.g1_A003 Rhizome2 (RHIZ2... 178 5e-044
gb|BE363001.2|BE363001 DG1_92_G01.g1_A002 Dark Grown 1 (DG1... 174 1e-042
gb|CW180237.1|CW180237 104_594_11160530_148_36631_003 Sorgh... 155 8e-037
gb|BE356814.1|BE356814 DG1_12_D07.g1_A002 Dark Grown 1 (DG1... 155 8e-037
gb|CN137489.1|CN137489 OX1_57_D04.g1_A002 Oxidatively-stres... 138 2e-036
gb|CW184571.1|CW184571 104_600_11165220_116_36688_034 Sorgh... 148 9e-035
gb|CW247562.1|CW247562 104_708_11221843_116_35017_070 Sorgh... 128 7e-032
gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2... 122 2e-031
gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum b... 121 5e-031
gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stres... 121 6e-031
gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated... 121 6e-031
gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sor... 121 6e-031
gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkal... 118 4e-030
gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkal... 116 1e-029
gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorgh... 116 1e-029
gb|BG103195.1|BG103195 RHIZ2_19_D03.g1_A003 Rhizome2 (RHIZ2... 128 8e-029
gb|BG103368.1|BG103368 RHIZ2_19_D03.b1_A003 Rhizome2 (RHIZ2... 128 8e-029
gb|BG557655.1|BG557655 EM1_54_G11.g1_A002 Embryo 1 (EM1) So... 128 8e-029
gb|BG559614.1|BG559614 RHIZ2_71_B07.g1_A003 Rhizome2 (RHIZ2... 124 1e-027
gb|CN137417.1|CN137417 OX1_57_D04.b1_A002 Oxidatively-stres... 123 2e-027
gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1... 121 1e-026
gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-defici... 121 1e-026
gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1... 120 2e-026
gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/c... 120 2e-026
gb|AW923175.1|AW923175 DG1_49_A09.g1_A002 Dark Grown 1 (DG1... 119 3e-026
gb|CD462503.1|CD462503 ETH1_38_E02.b1_A002 Ethylene-treated... 119 3e-026
gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficie... 78 7e-026
gb|CN146340.1|CN146340 WOUND1_39_D11.g1_A002 Wounded leaves... 96 1e-023
gb|CX612853.1|CX612853 GABR1_4_G09.g1_A002 GA- or brassinol... 92 2e-022
gb|BG465826.1|BG465826 RHIZ2_45_A09.g1_A003 Rhizome2 (RHIZ2... 105 8e-022
gb|BE361254.1|BE361254 DG1_70_D12.g1_A002 Dark Grown 1 (DG1... 85 1e-021
gb|BE363151.1|BE363151 DG1_9_E08.g1_A002 Dark Grown 1 (DG1)... 101 8e-021
>gb|CW249841.1|CW249841 104_711_11223062_116_35044_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223062, DNA
sequence
Length = 683
Score = 187 bits (402), Expect(2) = 6e-052
Identities = 80/103 (77%), Positives = 84/103 (81%)
Frame = -3 / -2
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLW GTVALPPDAP+
Sbjct: 532 ALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGAVVYDNTLWDGTVALPPDAPM 353
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
SD DRR SAA+R+LN RLS DPRVEVCQLAIADGVTICRRVV*
Sbjct: 352 SDHDRRISAAVRDLNARLSADPRVEVCQLAIADGVTICRRVV* 224
Score = 138 bits (297), Expect = 5e-032
Identities = 70/132 (53%), Positives = 75/132 (56%)
Frame = +2 / +3
Query: 212 YMILVVGSSSHQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXX 391
++IL V TTRRQMVTPSAMASWQTSTRGS E R L S AAE
Sbjct: 192 HVILYVHVIDDHTTRRQMVTPSAMASWQTSTRGSAERRALRSRTAAEMRRSWSDMGASGG 371
Query: 392 XXTVPAHSVLSYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSARKLVQLFQG 571
TVP+HSVLSY SSCSWYRT*LGLSASTKAKS AP LA SA +
Sbjct: 372 SATVPSHSVLSYTTAPPTRTRRSSCSWYRT*LGLSASTKAKSNAPWLASSASSASRCSSA 551
Query: 572 GALPEGHLARHP 607
G + L P
Sbjct: 552 GPSRKSTLCATP 587
Score = 38.6 bits (78), Expect(2) = 6e-052
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3 / -3
Query: 609 PGWRARWPSGRAPPWNSWT 553
P WR RW SGRA W++WT
Sbjct: 588 PVWRTRWTSGRALRWSTWT 532
>gb|CN146262.1|CN146262 WOUND1_39_D11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D11_A002 3', mRNA sequence
Length = 713
Score = 188 bits (404), Expect(2) = 5e-051
Identities = 79/110 (71%), Positives = 89/110 (80%)
Frame = -3 / +1
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVA
Sbjct: 151 PALDGLDALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 330
Query: 393 LPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 331 LPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 480
Score = 137 bits (294), Expect(2) = 1e-034
Identities = 65/101 (64%), Positives = 67/101 (66%)
Frame = +2 / -1
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 482 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 303
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSA 544
SY SSCSWYRT*LGLSAST AKS AP LA SA
Sbjct: 302 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAPWLASSA 180
Score = 34.5 bits (69), Expect(2) = 5e-051
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E AGVA KV FREGP L+ LD
Sbjct: 109 ESAGVAHKVDFREGPALDGLD 171
Score = 29.9 bits (59), Expect(2) = 1e-034
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3 / -1
Query: 564 SRGGPSRKATLPATPARS 617
S GPSRK+TL ATPA S
Sbjct: 161 SSAGPSRKSTLCATPALS 108
>gb|CW318949.1|CW318949 104_811_11474228_148_35883_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474228, DNA
sequence
Length = 708
Score = 188 bits (404), Expect(2) = 5e-051
Identities = 79/110 (71%), Positives = 89/110 (80%)
Frame = -3 / -2
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVA
Sbjct: 503 PALDGLDALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 324
Query: 393 LPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 323 LPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 174
Score = 137 bits (294), Expect(2) = 1e-034
Identities = 65/101 (64%), Positives = 67/101 (66%)
Frame = +2 / +1
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 172 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 351
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSA 544
SY SSCSWYRT*LGLSAST AKS AP LA SA
Sbjct: 352 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAPWLASSA 474
Score = 34.5 bits (69), Expect(2) = 5e-051
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / -2
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E AGVA KV FREGP L+ LD
Sbjct: 545 ESAGVAHKVDFREGPALDGLD 483
Score = 29.9 bits (59), Expect(2) = 1e-034
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3 / +1
Query: 564 SRGGPSRKATLPATPARS 617
S GPSRK+TL ATPA S
Sbjct: 493 SSAGPSRKSTLCATPALS 546
>gb|BZ628759.1|BZ628759 ih62b02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih62b02 5', DNA sequence
Length = 645
Score = 188 bits (404), Expect(2) = 5e-051
Identities = 79/110 (71%), Positives = 89/110 (80%)
Frame = -3 / +1
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVA
Sbjct: 298 PALDGLDALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 477
Query: 393 LPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 478 LPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 627
Score = 137 bits (294), Expect(2) = 1e-034
Identities = 65/101 (64%), Positives = 67/101 (66%)
Frame = +2 / -2
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 629 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 450
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSA 544
SY SSCSWYRT*LGLSAST AKS AP LA SA
Sbjct: 449 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAPWLASSA 327
Score = 34.5 bits (69), Expect(2) = 5e-051
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E AGVA KV FREGP L+ LD
Sbjct: 256 ESAGVAHKVDFREGPALDGLD 318
Score = 29.9 bits (59), Expect(2) = 1e-034
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3 / -2
Query: 564 SRGGPSRKATLPATPARS 617
S GPSRK+TL ATPA S
Sbjct: 308 SSAGPSRKSTLCATPALS 255
>gb|BZ628758.1|BZ628758 ih62b02.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih62b02 5', DNA sequence
Length = 564
Score = 188 bits (404), Expect(2) = 5e-051
Identities = 79/110 (71%), Positives = 89/110 (80%)
Frame = -3 / -1
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVA
Sbjct: 444 PALDGLDALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 265
Query: 393 LPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 264 LPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 115
Score = 137 bits (294), Expect(2) = 1e-034
Identities = 65/101 (64%), Positives = 67/101 (66%)
Frame = +2 / +2
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 113 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 292
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSA 544
SY SSCSWYRT*LGLSAST AKS AP LA SA
Sbjct: 293 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAPWLASSA 415
Score = 34.5 bits (69), Expect(2) = 5e-051
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E AGVA KV FREGP L+ LD
Sbjct: 486 ESAGVAHKVDFREGPALDGLD 424
Score = 29.9 bits (59), Expect(2) = 1e-034
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3 / +2
Query: 564 SRGGPSRKATLPATPARS 617
S GPSRK+TL ATPA S
Sbjct: 434 SSAGPSRKSTLCATPALS 487
>gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111651, DNA
sequence
Length = 594
Score = 182 bits (393), Expect(2) = 9e-051
Identities = 77/100 (77%), Positives = 81/100 (81%)
Frame = -3 / -3
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLW GTVALPPDAP+
Sbjct: 301 ALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGAVVYDNTLWDGTVALPPDAPM 122
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRR 253
SD DRR SAA+R+LN RLS DPRVEVCQLAIADGVTICRR
Sbjct: 121 SDHDRRISAAVRDLNARLSADPRVEVCQLAIADGVTICRR 2
Score = 131 bits (280), Expect = 1e-029
Identities = 65/118 (55%), Positives = 68/118 (57%)
Frame = +2 / +3
Query: 254 RRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVLSYXX 433
RRQMVTPSAMASWQTSTRGS E R L S AAE TVP+HSVLSY
Sbjct: 3 RRQMVTPSAMASWQTSTRGSAERRALRSRTAAEMRRSWSDMGASGGSATVPSHSVLSYTT 182
Query: 434 XXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSARKLVQLFQGGALPEGHLARHP 607
SSCSWYRT*LGLSASTKAKS AP LA SA + G + L P
Sbjct: 183 APPTRTRRSSCSWYRT*LGLSASTKAKSNAPWLASSASSASRCSSAGPSRKSTLCATP 356
Score = 38.6 bits (78), Expect(2) = 9e-051
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3 / -1
Query: 609 PGWRARWPSGRAPPWNSWT 553
P WR RW SGRA W++WT
Sbjct: 357 PVWRTRWTSGRALRWSTWT 301
>gb|CX612764.1|CX612764 GABR1_4_G09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_G09_A002 3', mRNA sequence
Length = 661
Score = 188 bits (404), Expect(2) = 2e-050
Identities = 79/110 (71%), Positives = 89/110 (80%)
Frame = -3 / +2
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVA
Sbjct: 41 PALDGLDALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 220
Query: 393 LPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 221 LPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 370
Score = 137 bits (294), Expect(2) = 2e-034
Identities = 65/101 (64%), Positives = 67/101 (66%)
Frame = +2 / -2
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 372 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 193
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSA 544
SY SSCSWYRT*LGLSAST AKS AP LA SA
Sbjct: 192 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAPWLASSA 70
Score = 32.7 bits (65), Expect(2) = 2e-050
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2 / +2
Query: 610 AGVAGKVAFREGPPLEQLD 554
AGVA KV FREGP L+ LD
Sbjct: 5 AGVAHKVDFREGPALDGLD 61
Score = 29.0 bits (57), Expect(2) = 2e-034
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +3 / -2
Query: 564 SRGGPSRKATLPATPA 611
S GPSRK+TL ATPA
Sbjct: 51 SSAGPSRKSTLCATPA 4
>gb|BG241494.1|BG241494 RHIZ2_50_A05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 526
Score = 187 bits (402), Expect(2) = 1e-049
Identities = 78/103 (75%), Positives = 87/103 (84%)
Frame = -3 / +2
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVALPP+ P+
Sbjct: 62 ALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVALPPETPM 241
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 242 NDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 370
Score = 139 bits (299), Expect = 3e-032
Identities = 68/122 (55%), Positives = 73/122 (59%)
Frame = +2 / -2
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 372 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 193
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSARKLVQLFQGGALPEGHLAR 601
SY SSCSWYRT*LGLSAST AKS AP LA SA + + G + L
Sbjct: 192 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAPWLASSASSASRPYSAGPSRKSTLCA 13
Query: 602 HP 607
P
Sbjct: 12 TP 7
Score = 30.9 bits (61), Expect(2) = 1e-049
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 610 AGVAGKVAFREGPPLEQLD 554
AGVA KV FREGP L LD
Sbjct: 5 AGVAHKVDFREGPALYGLD 61
>gb|CD236128.1|CD236128 SS1_32_B09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_32_B09_A012 3', mRNA sequence
Length = 591
Score = 188 bits (404), Expect = 9e-047
Identities = 79/110 (71%), Positives = 89/110 (80%)
Frame = -3 / +3
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVA
Sbjct: 33 PALDGLDALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 212
Query: 393 LPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
LPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 213 LPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 362
Score = 137 bits (294), Expect(2) = 8e-033
Identities = 65/101 (64%), Positives = 67/101 (66%)
Frame = +2 / -3
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 364 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 185
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGSA 544
SY SSCSWYRT*LGLSAST AKS AP LA SA
Sbjct: 184 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAPWLASSA 62
Score = 24.0 bits (46), Expect(2) = 8e-033
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / -3
Query: 564 SRGGPSRKATLPAT 605
S GPSRK+TL AT
Sbjct: 43 SSAGPSRKSTLCAT 2
>gb|CL177459.1|CL177459 104_384_10893845_116_31916_293 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893845, DNA
sequence
Length = 545
Score = 182 bits (393), Expect = 3e-045
Identities = 76/99 (76%), Positives = 84/99 (84%)
Frame = -3 / +3
Query: 540 DPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLD 361
D AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVALPP+ P++DLD
Sbjct: 3 DEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVALPPETPMNDLD 182
Query: 360 RRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
RRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 183 RRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 299
Score = 135 bits (290), Expect = 5e-031
Identities = 64/100 (64%), Positives = 66/100 (66%)
Frame = +2 / -2
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 301 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 122
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAPGLAGS 541
SY SSCSWYRT*LGLSAST AKS AP LA S
Sbjct: 121 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAPWLASS 2
>gb|BG101966.1|BG101966 RHIZ2_22_A05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 546
Score = 178 bits (384), Expect = 5e-044
Identities = 74/96 (77%), Positives = 82/96 (85%)
Frame = -3 / +1
Query: 531 NPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRF 352
N GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVALPP+ P++DLDRRF
Sbjct: 1 NHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVALPPETPMNDLDRRF 180
Query: 351 SAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
SAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 181 SAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV* 288
Score = 131 bits (280), Expect = 1e-029
Identities = 61/95 (64%), Positives = 63/95 (66%)
Frame = +2 / -2
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 290 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 111
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKSKAP 526
SY SSCSWYRT*LGLSAST AKS AP
Sbjct: 110 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKSNAP 6
>gb|BE363001.2|BE363001 DG1_92_G01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 519
Score = 174 bits (374), Expect = 1e-042
Identities = 72/93 (77%), Positives = 80/93 (86%)
Frame = -3 / +1
Query: 522 AFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAA 343
AFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVALPP+ P++DLDRRFSAA
Sbjct: 1 AFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVALPPETPMNDLDRRFSAA 180
Query: 342 IRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
I++LNVRLS+D RVEVCQLAIADG+TICRR+V*
Sbjct: 181 IKDLNVRLSKDERVEVCQLAIADGITICRRLV* 279
Score = 126 bits (269), Expect = 4e-028
Identities = 59/92 (64%), Positives = 61/92 (66%)
Frame = +2 / -2
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 281 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 102
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSASTKAKS 517
SY SSCSWYRT*LGLSAST AKS
Sbjct: 101 SYTMLPPTLTRRSSCSWYRT*LGLSASTNAKS 6
>gb|CW180237.1|CW180237 104_594_11160530_148_36631_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160530, DNA
sequence
Length = 742
Score = 155 bits (332), Expect = 8e-037
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = -3 / -3
Query: 498 ADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRL 319
ADKPNYVRYHEQ VYDNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRL
Sbjct: 740 ADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRL 561
Query: 318 SQDPRVEVCQLAIADGVTICRRVV* 244
S+D RVEVCQLAIADG+TICRR+V*
Sbjct: 560 SKDERVEVCQLAIADGITICRRLV* 486
Score = 116 bits (247), Expect = 4e-025
Identities = 54/86 (62%), Positives = 56/86 (65%)
Frame = +2 / +1
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 484 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 663
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSA 499
SY SSCSWYRT*LGLSA
Sbjct: 664 SYTMLPPTLTRRSSCSWYRT*LGLSA 741
>gb|BE356814.1|BE356814 DG1_12_D07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 155 bits (332), Expect = 8e-037
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = -3 / +3
Query: 498 ADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRL 319
ADKPNYVRYHEQ VYDNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRL
Sbjct: 3 ADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRL 182
Query: 318 SQDPRVEVCQLAIADGVTICRRVV* 244
S+D RVEVCQLAIADG+TICRR+V*
Sbjct: 183 SKDERVEVCQLAIADGITICRRLV* 257
Score = 116 bits (247), Expect = 4e-025
Identities = 54/86 (62%), Positives = 56/86 (65%)
Frame = +2 / -1
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 259 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 80
Query: 422 SYXXXXXXXXXXSSCSWYRT*LGLSA 499
SY SSCSWYRT*LGLSA
Sbjct: 79 SYTMLPPTLTRRSSCSWYRT*LGLSA 2
>gb|CN137489.1|CN137489 OX1_57_D04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_D04_A002 5', mRNA sequence
Length = 786
Score = 138 bits (297), Expect(2) = 2e-036
Identities = 58/85 (68%), Positives = 65/85 (76%)
Frame = -3 / +2
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVA
Sbjct: 530 PALDGLDALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 709
Query: 393 LPPDAPLSDLDRRFSAAIRELNVRL 319
LPP+ P++DLDRRFSAAI++LNVRL
Sbjct: 710 LPPETPMNDLDRRFSAAIKDLNVRL 784
Score = 34.5 bits (69), Expect(2) = 2e-036
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E AGVA KV FREGP L+ LD
Sbjct: 488 ESAGVAHKVDFREGPALDGLD 550
>gb|CW184571.1|CW184571 104_600_11165220_116_36688_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165220, DNA
sequence
Length = 640
Score = 148 bits (317), Expect = 9e-035
Identities = 61/82 (74%), Positives = 69/82 (84%)
Frame = -3 / -2
Query: 489 PNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQD 310
PNYVRYHEQ VYDNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRLS+D
Sbjct: 639 PNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRLSKD 460
Query: 309 PRVEVCQLAIADGVTICRRVV* 244
RVEVCQLAIADG+TICRR+V*
Sbjct: 459 ERVEVCQLAIADGITICRRLV* 394
Score = 110 bits (235), Expect = 2e-023
Identities = 51/83 (61%), Positives = 53/83 (63%)
Frame = +2 / +2
Query: 242 HQTTRRQMVTPSAMASWQTSTRGS*ESRTLSSLMAAENXXXXXXXXXXXXXXTVPAHSVL 421
HQT RRQMV PSAMASWQTSTR S +S TL SL+AAEN TVPAHSVL
Sbjct: 392 HQTRRRQMVMPSAMASWQTSTRSSLDSLTLRSLIAAENLRSRSFMGVSGGNATVPAHSVL 571
Query: 422 SYXXXXXXXXXXSSCSWYRT*LG 490
SY SSCSWYRT*LG
Sbjct: 572 SYTMLPPTLTRRSSCSWYRT*LG 640
>gb|CW247562.1|CW247562 104_708_11221843_116_35017_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221843, DNA
sequence
Length = 570
Score = 128 bits (274), Expect(2) = 7e-032
Identities = 56/103 (54%), Positives = 67/103 (65%)
Frame = -3 / -2
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPL 373
+ LA +N GAFDFAFVDADK +Y YHE+ YDNTLW G+VA P DAPL
Sbjct: 401 ALLAAESNLGAFDFAFVDADKESYGGYHERLLRLVLVGGVLAYDNTLWGGSVAFPDDAPL 222
Query: 372 SDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
+D DR IR N ++ D RVEV QL +ADG+T+CRRVV*
Sbjct: 221 TDDDREVRDHIRAFNAVIAADARVEVVQLPVADGITLCRRVV* 93
Score = 29.9 bits (59), Expect(2) = 7e-032
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = -2 / -2
Query: 613 RAGVAGKVAFREGPPLEQLD 554
RAGVA KV FREG E LD
Sbjct: 461 RAGVAHKVDFREGLASEHLD 402
>gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 449
Score = 122 bits (261), Expect(2) = 2e-031
Identities = 50/99 (50%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YHE+ YDNTLW G+V LP DAP+
Sbjct: 148 IADEKNHGSFDFVFVDADKDNYLNYHERLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRK 327
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 328 YIRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 444
Score = 34.1 bits (68), Expect(2) = 2e-031
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 79 EKAGVAHKIDFREGPALPVLD 141
>gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_F12_A002 5', mRNA sequence
Length = 649
Score = 121 bits (259), Expect(2) = 5e-031
Identities = 49/99 (49%), Positives = 62/99 (62%)
Frame = -3 / -3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 527 IADEKNHGSFDFVFVDADKDNYLNYHDRLLKLAKLGGLIGYDNTLWNGSVVLPDDAPMRK 348
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 347 YIRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 231
Score = 34.1 bits (68), Expect(2) = 5e-031
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / -3
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 596 EKAGVAHKIDFREGPALPVLD 534
>gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_C04_A002 3', mRNA sequence
Length = 716
Score = 121 bits (258), Expect(2) = 6e-031
Identities = 49/99 (49%), Positives = 62/99 (62%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 120 IADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRK 299
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 300 YIRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 416
Score = 34.1 bits (68), Expect(2) = 6e-031
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 51 EKAGVAHKIDFREGPALPVLD 113
>gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_C02_A002 3', mRNA sequence
Length = 604
Score = 121 bits (258), Expect(2) = 6e-031
Identities = 49/99 (49%), Positives = 62/99 (62%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 78 IADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRK 257
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 258 YVRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 374
Score = 34.1 bits (68), Expect(2) = 6e-031
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 9 EKAGVAHKIDFREGPALPVLD 71
>gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 121 bits (258), Expect(2) = 6e-031
Identities = 49/99 (49%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 112 IADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRK 291
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 292 YIRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 408
Score = 34.1 bits (68), Expect(2) = 6e-031
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 43 EKAGVAHKIDFREGPALPVLD 105
>gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_C05_A002 5', mRNA sequence
Length = 826
Score = 118 bits (252), Expect(2) = 4e-030
Identities = 48/99 (48%), Positives = 61/99 (61%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 473 IADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRK 652
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + D VT+CRRV
Sbjct: 653 YIRFYRDFVLVLNKALAADERVEICQLPVGDSVTLCRRV 769
Score = 34.1 bits (68), Expect(2) = 4e-030
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 404 EKAGVAHKIDFREGPALPVLD 466
>gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_C05_A002 3', mRNA sequence
Length = 752
Score = 116 bits (248), Expect(2) = 1e-029
Identities = 48/99 (48%), Positives = 61/99 (61%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 227 IADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRK 406
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+ QL + DGVT+CRRV
Sbjct: 407 YIRFYRDFVLVLNKALAADERVEISQLPVGDGVTLCRRV 523
Score = 34.1 bits (68), Expect(2) = 1e-029
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 158 EKAGVAHKIDFREGPALPVLD 220
>gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231851, DNA
sequence
Length = 649
Score = 116 bits (248), Expect(2) = 1e-029
Identities = 47/94 (50%), Positives = 59/94 (62%)
Frame = -3 / -1
Query: 531 NPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRF 352
N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+ R +
Sbjct: 439 NHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRKYIRFY 260
Query: 351 SAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
+ LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 259 RDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 158
Score = 34.1 bits (68), Expect(2) = 1e-029
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 604 EKAGVAHKIDFREGPALPVLD 542
>gb|BG103195.1|BG103195 RHIZ2_19_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 359
Score = 128 bits (274), Expect = 8e-029
Identities = 51/61 (83%), Positives = 59/61 (96%)
Frame = -3 / +2
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V
Sbjct: 44 YDNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV 223
Query: 246 * 244
*
Sbjct: 224 * 226
>gb|BG103368.1|BG103368 RHIZ2_19_D03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 411
Score = 128 bits (274), Expect = 8e-029
Identities = 51/61 (83%), Positives = 59/61 (96%)
Frame = -3 / +2
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V
Sbjct: 44 YDNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV 223
Query: 246 * 244
*
Sbjct: 224 * 226
>gb|BG557655.1|BG557655 EM1_54_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 528
Score = 128 bits (274), Expect = 8e-029
Identities = 51/61 (83%), Positives = 59/61 (96%)
Frame = -3 / +1
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V
Sbjct: 25 YDNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV 204
Query: 246 * 244
*
Sbjct: 205 * 207
>gb|BG559614.1|BG559614 RHIZ2_71_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 294
Score = 124 bits (266), Expect = 1e-027
Identities = 49/59 (83%), Positives = 57/59 (96%)
Frame = -3 / +2
Query: 423 DNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
DNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRLS+D RVEVCQLAIADG+TICRR+V
Sbjct: 20 DNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVCQLAIADGITICRRLV 196
>gb|CN137417.1|CN137417 OX1_57_D04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_D04_A002 3', mRNA sequence
Length = 531
Score = 123 bits (264), Expect = 2e-027
Identities = 49/61 (80%), Positives = 58/61 (95%)
Frame = -3 / +2
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRL +D RVEVCQLAIA+G+TICRR+V
Sbjct: 14 YDNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRLFKDERVEVCQLAIAEGITICRRLV 193
Query: 246 * 244
*
Sbjct: 194 * 196
>gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 121 bits (258), Expect = 1e-026
Identities = 49/99 (49%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 46 IADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRK 225
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 226 YIRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 342
>gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_H04_A002 3', mRNA sequence
Length = 573
Score = 121 bits (258), Expect = 1e-026
Identities = 49/99 (49%), Positives = 62/99 (62%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 53 IADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRK 232
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 233 YIRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 349
>gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 120 bits (256), Expect = 2e-026
Identities = 49/98 (50%), Positives = 61/98 (62%)
Frame = -3 / +1
Query: 543 ADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDL 364
AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 79 ADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRKY 258
Query: 363 DRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 259 IRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 372
>gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_F11_A007 3', mRNA sequence
Length = 542
Score = 120 bits (256), Expect = 2e-026
Identities = 49/98 (50%), Positives = 61/98 (62%)
Frame = -3 / +2
Query: 543 ADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDL 364
AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 2 ADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRKY 181
Query: 363 DRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 182 IRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 295
>gb|AW923175.1|AW923175 DG1_49_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 119 bits (255), Expect = 3e-026
Identities = 48/59 (81%), Positives = 56/59 (94%)
Frame = -3 / +1
Query: 420 NTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV* 244
NTLWAGTVALPP+ P++DLDRRFSAAI++LNVRL +D RVEVCQLAIADG+TICRR+V*
Sbjct: 1 NTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRLFKDERVEVCQLAIADGITICRRLV* 177
>gb|CD462503.1|CD462503 ETH1_38_E02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_E02_A002 3', mRNA sequence
Length = 552
Score = 119 bits (255), Expect = 3e-026
Identities = 49/61 (80%), Positives = 57/61 (93%)
Frame = -3 / +2
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNTLWAGTVALPP+ P++DLDRRFSAAI++LNVRLS+D RVEV QLAIAD +TICRR+V
Sbjct: 26 YDNTLWAGTVALPPETPMNDLDRRFSAAIKDLNVRLSKDERVEVFQLAIADRITICRRLV 205
Query: 246 * 244
*
Sbjct: 206 * 208
>gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_G06_A002 3', mRNA sequence
Length = 610
Score = 77.6 bits (163), Expect(3) = 7e-026
Identities = 31/59 (52%), Positives = 39/59 (66%)
Frame = -3 / +2
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
YDN LW G+V LP DAP+ R + + LN L+ D RVE+CQL + DGVT+CRRV
Sbjct: 203 YDNMLWNGSVVLPDDAPMRKYIRFYRDFVLVLNKALAADERVEICQLPVGDGVTLCRRV 379
Score = 44.1 bits (90), Expect(3) = 7e-026
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRY 472
+AD N G+FDF FVDADK NY+ Y
Sbjct: 82 IADEKNHGSFDFVFVDADKDNYLNY 156
Score = 34.1 bits (68), Expect(3) = 7e-026
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E+AGVA K+ FREGP L LD
Sbjct: 13 EKAGVAHKIDFREGPALPVLD 75
>gb|CN146340.1|CN146340 WOUND1_39_D11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D11_A002 5', mRNA sequence
Length = 719
Score = 95.9 bits (203), Expect(2) = 1e-023
Identities = 41/62 (66%), Positives = 43/62 (69%)
Frame = -3 / +1
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLWAGTVA
Sbjct: 532 PALDGLDALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 711
Query: 393 LP 388
LP
Sbjct: 712 LP 717
Score = 34.5 bits (69), Expect(2) = 1e-023
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E AGVA KV FREGP L+ LD
Sbjct: 490 ESAGVAHKVDFREGPALDGLD 552
>gb|CX612853.1|CX612853 GABR1_4_G09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_G09_A002 5', mRNA sequence
Length = 732
Score = 91.8 bits (194), Expect(2) = 2e-022
Identities = 40/62 (64%), Positives = 42/62 (67%)
Frame = -3 / +3
Query: 573 PPWNSWTSFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVA 394
P + + LAD AN GAFDFAFVDAD PNYVRYHEQ VYDNTLWAGTVA
Sbjct: 546 PALDGLDALLADEANHGAFDFAFVDAD*PNYVRYHEQLLRLVRVGGSIVYDNTLWAGTVA 725
Query: 393 LP 388
LP
Sbjct: 726 LP 731
Score = 34.5 bits (69), Expect(2) = 2e-022
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLD 554
E AGVA KV FREGP L+ LD
Sbjct: 504 ESAGVAHKVDFREGPALDGLD 566
>gb|BG465826.1|BG465826 RHIZ2_45_A09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 166
Score = 105 bits (223), Expect = 8e-022
Identities = 40/54 (74%), Positives = 49/54 (90%)
Frame = -3 / +1
Query: 420 NTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTIC 259
NTLWAGTVA PP+ P++DLDRRFSAAI++LNVRL +D RV+VCQ AIA+G+TIC
Sbjct: 1 NTLWAGTVAFPPETPMNDLDRRFSAAIKDLNVRLFKDERVKVCQFAIAEGITIC 162
>gb|BE361254.1|BE361254 DG1_70_D12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 408
Score = 85.4 bits (180), Expect(2) = 1e-021
Identities = 36/52 (69%), Positives = 37/52 (71%)
Frame = -3 / +2
Query: 552 SFLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTV 397
+ LAD AN GAFDFAFVDADKPNYVRYHEQ VYDNTLW GTV
Sbjct: 251 ALLADEANHGAFDFAFVDADKPNYVRYHEQLLRLVRVGGAVVYDNTLWDGTV 406
Score = 38.6 bits (78), Expect(2) = 1e-021
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3 / +3
Query: 609 PGWRARWPSGRAPPWNSWT 553
P WR RW SGRA W++WT
Sbjct: 195 PVWRTRWTSGRALRWSTWT 251
>gb|BE363151.1|BE363151 DG1_9_E08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 440
Score = 101 bits (216), Expect = 8e-021
Identities = 42/90 (46%), Positives = 53/90 (58%)
Frame = -3 / +2
Query: 543 ADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDL 364
AD N G+FDF FVDADK NY+ YH++ YDNTLW G+V LP DAP+
Sbjct: 170 ADEKNHGSFDFVFVDADKDNYLNYHDRLLKLVKLGGLIGYDNTLWNGSVVLPDDAPMRKY 349
Query: 363 DRRFSAAIRELNVRLSQDPRVEVCQLAIAD 274
R + + LN L+ D RVE+CQL + D
Sbjct: 350 IRFYRDFVLVLNKALAADERVEICQLPVGD 439
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 599,612,732
Number of Sequences: 832831
Number of extensions: 6894166
Number of successful extensions: 165464
Number of sequences better than 1.0e-020: 44
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18186269976
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)