TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.4
(591 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW287288.1|CW287288 104_765_11411337_116_35521_041 Sorgh... 125 7e-033
gb|CW215971.1|CW215971 104_648_11194859_116_37113_038 Sorgh... 125 7e-033
gb|CW378467.1|CW378467 fsbb001f057e01f0 Sorghum methylation... 125 7e-033
gb|BI211391.1|BI211391 IP1_60_B08.b1_A002 Immature pannicle... 125 7e-033
gb|BI211648.1|BI211648 IP1_60_B08.g1_A002 Immature pannicle... 125 7e-033
gb|BE917809.1|BE917809 OV1_7_D06.g1_A002 Ovary 1 (OV1) Sorg... 125 7e-028
>gb|CW287288.1|CW287288 104_765_11411337_116_35521_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411337, DNA
sequence
Length = 682
Score = 125 bits (267), Expect(2) = 7e-033
Identities = 49/54 (90%), Positives = 50/54 (92%)
Frame = -2 / -3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCPVD LKLGVCAN+LNGLIN LGTPPRTPCCTLIQGLADLEAAVCLCT LRA
Sbjct: 263 RCPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRA 102
Score = 113 bits (242), Expect(2) = 7e-027
Identities = 48/57 (84%), Positives = 49/57 (85%)
Frame = +1 / +1
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQRPLV 411
A VQRHTAASRSASPWISVQHGVLGGVPR LISPFS LAHTP+FS STGQRP V
Sbjct: 103 ARSAVQRHTAASRSASPWISVQHGVLGGVPRFTLISPFSTLAHTPNFSVSTGQRPRV 273
Score = 36.3 bits (73), Expect(2) = 7e-033
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -2 / -3
Query: 185 YCGRRVPSGFQC 150
YCGRRVPSGFQC
Sbjct: 47 YCGRRVPSGFQC 12
Score = 27.6 bits (54), Expect(2) = 7e-027
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2 / +2
Query: 146 RSTGSPMGRACXXXXXXXXX*WAG* 220
RSTG P GRAC *W G*
Sbjct: 8 RSTGIPRGRACRSS*RGG*G*WGG* 82
>gb|CW215971.1|CW215971 104_648_11194859_116_37113_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194859, DNA
sequence
Length = 604
Score = 125 bits (267), Expect(2) = 7e-033
Identities = 49/54 (90%), Positives = 50/54 (92%)
Frame = -2 / -2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCPVD LKLGVCAN+LNGLIN LGTPPRTPCCTLIQGLADLEAAVCLCT LRA
Sbjct: 558 RCPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRA 397
Score = 113 bits (242), Expect(2) = 7e-027
Identities = 48/57 (84%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQRPLV 411
A VQRHTAASRSASPWISVQHGVLGGVPR LISPFS LAHTP+FS STGQRP V
Sbjct: 398 ARSAVQRHTAASRSASPWISVQHGVLGGVPRFTLISPFSTLAHTPNFSVSTGQRPRV 568
Score = 36.3 bits (73), Expect(2) = 7e-033
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -2 / -2
Query: 185 YCGRRVPSGFQC 150
YCGRRVPSGFQC
Sbjct: 342 YCGRRVPSGFQC 307
Score = 27.6 bits (54), Expect(2) = 7e-027
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2 / +3
Query: 146 RSTGSPMGRACXXXXXXXXX*WAG* 220
RSTG P GRAC *W G*
Sbjct: 303 RSTGIPRGRACRSS*RGG*G*WGG* 377
>gb|CW378467.1|CW378467 fsbb001f057e01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f057e01, DNA
sequence
Length = 603
Score = 125 bits (267), Expect(2) = 7e-033
Identities = 49/54 (90%), Positives = 50/54 (92%)
Frame = -2 / -1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCPVD LKLGVCAN+LNGLIN LGTPPRTPCCTLIQGLADLEAAVCLCT LRA
Sbjct: 432 RCPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRA 271
Score = 113 bits (242), Expect(2) = 7e-027
Identities = 48/57 (84%), Positives = 49/57 (85%)
Frame = +1 / +2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQRPLV 411
A VQRHTAASRSASPWISVQHGVLGGVPR LISPFS LAHTP+FS STGQRP V
Sbjct: 272 ARSAVQRHTAASRSASPWISVQHGVLGGVPRFTLISPFSTLAHTPNFSVSTGQRPRV 442
Score = 36.3 bits (73), Expect(2) = 7e-033
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -2 / -1
Query: 185 YCGRRVPSGFQC 150
YCGRRVPSGFQC
Sbjct: 216 YCGRRVPSGFQC 181
Score = 27.6 bits (54), Expect(2) = 7e-027
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2 / +3
Query: 146 RSTGSPMGRACXXXXXXXXX*WAG* 220
RSTG P GRAC *W G*
Sbjct: 177 RSTGIPRGRACRSS*RGG*G*WGG* 251
>gb|BI211391.1|BI211391 IP1_60_B08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 509
Score = 125 bits (267), Expect(2) = 7e-033
Identities = 49/54 (90%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCPVD LKLGVCAN+LNGLIN LGTPPRTPCCTLIQGLADLEAAVCLCT LRA
Sbjct: 36 RCPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRA 197
Score = 113 bits (242), Expect(2) = 7e-027
Identities = 48/57 (84%), Positives = 49/57 (85%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQRPLV 411
A VQRHTAASRSASPWISVQHGVLGGVPR LISPFS LAHTP+FS STGQRP V
Sbjct: 196 ARSAVQRHTAASRSASPWISVQHGVLGGVPRFTLISPFSTLAHTPNFSVSTGQRPRV 26
Score = 36.3 bits (73), Expect(2) = 7e-033
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCGRRVPSGFQC
Sbjct: 252 YCGRRVPSGFQC 287
Score = 27.6 bits (54), Expect(2) = 7e-027
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2 / -3
Query: 146 RSTGSPMGRACXXXXXXXXX*WAG* 220
RSTG P GRAC *W G*
Sbjct: 291 RSTGIPRGRACRSS*RGG*G*WGG* 217
>gb|BI211648.1|BI211648 IP1_60_B08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 125 bits (267), Expect(2) = 7e-033
Identities = 49/54 (90%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCPVD LKLGVCAN+LNGLIN LGTPPRTPCCTLIQGLADLEAAVCLCT LRA
Sbjct: 36 RCPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRA 197
Score = 113 bits (242), Expect(2) = 7e-027
Identities = 48/57 (84%), Positives = 49/57 (85%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQRPLV 411
A VQRHTAASRSASPWISVQHGVLGGVPR LISPFS LAHTP+FS STGQRP V
Sbjct: 196 ARSAVQRHTAASRSASPWISVQHGVLGGVPRFTLISPFSTLAHTPNFSVSTGQRPRV 26
Score = 36.3 bits (73), Expect(2) = 7e-033
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQC 150
YCGRRVPSGFQC
Sbjct: 252 YCGRRVPSGFQC 287
Score = 27.6 bits (54), Expect(2) = 7e-027
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2 / -3
Query: 146 RSTGSPMGRACXXXXXXXXX*WAG* 220
RSTG P GRAC *W G*
Sbjct: 291 RSTGIPRGRACRSS*RGG*G*WGG* 217
>gb|BE917809.1|BE917809 OV1_7_D06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 355
Score = 125 bits (267), Expect = 7e-028
Identities = 49/54 (90%), Positives = 50/54 (92%)
Frame = -2 / +2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCPVD LKLGVCAN+LNGLIN LGTPPRTPCCTLIQGLADLEAAVCLCT LRA
Sbjct: 167 RCPVDTLKLGVCANVLNGLINVNLGTPPRTPCCTLIQGLADLEAAVCLCTALRA 328
Score = 113 bits (242), Expect = 2e-024
Identities = 48/57 (84%), Positives = 49/57 (85%)
Frame = +1 / -2
Query: 241 ALRTVQRHTAASRSASPWISVQHGVLGGVPRVALISPFSKLAHTPSFSASTGQRPLV 411
A VQRHTAASRSASPWISVQHGVLGGVPR LISPFS LAHTP+FS STGQRP V
Sbjct: 327 ARSAVQRHTAASRSASPWISVQHGVLGGVPRFTLISPFSTLAHTPNFSVSTGQRPRV 157
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 311,830,326
Number of Sequences: 832831
Number of extensions: 3153501
Number of successful extensions: 63988
Number of sequences better than 1.0e-020: 6
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17109451359
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)