TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418885.2.3
(568 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW183646.1|CW183646 104_599_11164724_148_36673_070 Sorgh... 118 5e-026
gb|CL151515.1|CL151515 104_334_10779308_114_31361_092 Sorgh... 108 8e-023
gb|CW070295.1|CW070295 104_321_10526663_5_30098 Sorghum met... 108 8e-023
gb|AW677822.1|AW677822 WS1_11_B01.b1_A002 Water-stressed 1 ... 108 8e-023
gb|AW677829.1|AW677829 WS1_11_B01.g1_A002 Water-stressed 1 ... 108 8e-023
gb|AW677892.1|AW677892 WS1_11_C03.g1_A002 Water-stressed 1 ... 108 8e-023
gb|AW680424.1|AW680424 WS1_52_H06.g1_A002 Water-stressed 1 ... 108 8e-023
gb|AW680582.1|AW680582 WS1_6_A02.b1_A002 Water-stressed 1 (... 108 8e-023
gb|AW680743.1|AW680743 WS1_6_A02.g1_A002 Water-stressed 1 (... 108 8e-023
gb|AW746483.1|AW746483 WS1_53_B06.b1_A002 Water-stressed 1 ... 108 8e-023
gb|AW747613.1|AW747613 WS1_74_B09.g1_A002 Water-stressed 1 ... 108 8e-023
gb|AW747692.1|AW747692 WS1_75_D09.g1_A002 Water-stressed 1 ... 108 8e-023
gb|AW924425.1|AW924425 WS1_69_C03.b1_A002 Water-stressed 1 ... 108 8e-023
gb|AW924687.1|AW924687 WS1_71_B09.b1_A002 Water-stressed 1 ... 108 8e-023
gb|AW924779.1|AW924779 WS1_72_B09.b1_A002 Water-stressed 1 ... 108 8e-023
gb|AW925002.1|AW925002 WS1_74_B09.b1_A002 Water-stressed 1 ... 108 8e-023
gb|BE363712.1|BE363712 WS1_69_C03.g2_A002 Water-stressed 1 ... 108 8e-023
gb|BE363792.1|BE363792 WS1_71_B09.g2_A002 Water-stressed 1 ... 108 8e-023
gb|BE593752.1|BE593752 WS1_101_G05.g1_A002 Water-stressed 1... 108 8e-023
gb|BE594064.1|BE594064 WS1_101_G05.b1_A002 Water-stressed 1... 108 8e-023
gb|CD230418.1|CD230418 SS1_43_A12.g1_A012 Salt-stressed see... 108 8e-023
gb|CD423396.1|CD423396 SA1_23_F06.b1_A002 Salicylic acid-tr... 108 8e-023
gb|CD423506.1|CD423506 SA1_23_F06.g1_A002 Salicylic acid-tr... 108 8e-023
gb|CD424643.1|CD424643 SA1_8_C08.g1_A002 Salicylic acid-tre... 108 8e-023
gb|CD425419.1|CD425419 SA1_12_G10.b1_A002 Salicylic acid-tr... 108 8e-023
gb|CD425487.1|CD425487 SA1_12_G10.g1_A002 Salicylic acid-tr... 108 8e-023
gb|CD426603.1|CD426603 SA1_21_C03.g1_A002 Salicylic acid-tr... 108 8e-023
gb|CD426879.1|CD426879 SA1_25_B01.g1_A002 Salicylic acid-tr... 108 8e-023
gb|CD427661.1|CD427661 SA1_37_F08.g1_A002 Salicylic acid-tr... 108 8e-023
gb|CD461851.1|CD461851 SA1_31_E11.b1_A002 Salicylic acid-tr... 108 8e-023
gb|CN139123.1|CN139123 OX1_16_D03.b1_A002 Oxidatively-stres... 108 8e-023
gb|CN146416.1|CN146416 WOUND1_41_C07.b1_A002 Wounded leaves... 108 8e-023
gb|CN146495.1|CN146495 WOUND1_41_C07.g1_A002 Wounded leaves... 108 8e-023
gb|CN139195.1|CN139195 OX1_16_D03.g1_A002 Oxidatively-stres... 107 1e-022
gb|CD428429.1|CD428429 ETH1_31_A06.g1_A002 Ethylene-treated... 107 2e-022
gb|CD423088.1|CD423088 SA1_27_F02.b1_A002 Salicylic acid-tr... 106 3e-022
gb|CD423201.1|CD423201 SA1_27_F02.g1_A002 Salicylic acid-tr... 106 3e-022
gb|AW924891.1|AW924891 WS1_72_B09.g1_A002 Water-stressed 1 ... 105 4e-022
gb|CD427504.1|CD427504 SA1_37_F08.b1_A002 Salicylic acid-tr... 105 4e-022
gb|CF758170.1|CF758170 DSAF1_28_D01.g1_A011 Drought-stresse... 105 8e-022
gb|AW746539.1|AW746539 WS1_53_B06.g1_A002 Water-stressed 1 ... 103 3e-021
>gb|CW183646.1|CW183646 104_599_11164724_148_36673_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164724, DNA
sequence
Length = 629
Score = 118 bits (253), Expect = 5e-026
Identities = 44/77 (57%), Positives = 55/77 (71%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+P LVVC PA ++G+ P A+CCS LRAQE+C C YA +P F KYI++PN +T TSCG
Sbjct: 25 CNPAQLVVCAPAVINGSPPTASCCSNLRAQESCFCEYAHNPAFRKYIDSPNAGRTLTSCG 204
Query: 450 IAIPKC*ASALRRRFAC 500
I IP C*A+ R R C
Sbjct: 205 IPIPDC*ATGRRSRVVC 255
>gb|CL151515.1|CL151515 104_334_10779308_114_31361_092 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779308, DNA
sequence
Length = 733
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / -2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 276 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 97
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 96 VALPRC*AATSPHHGCC 46
>gb|CW070295.1|CW070295 104_321_10526663_5_30098 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526663, DNA
sequence
Length = 437
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / -1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 365 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 186
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 185 VALPRC*AATSPHHGCC 135
>gb|AW677822.1|AW677822 WS1_11_B01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 484
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 127 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 306
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 307 VALPRC*AATSPHHGCC 357
>gb|AW677829.1|AW677829 WS1_11_B01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 516
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 127 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 306
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 307 VALPRC*AATSPHHGCC 357
>gb|AW677892.1|AW677892 WS1_11_C03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 127 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 306
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 307 VALPRC*AATSPHHGCC 357
>gb|AW680424.1|AW680424 WS1_52_H06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 125 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 304
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 305 VALPRC*AATSPHHGCC 355
>gb|AW680582.1|AW680582 WS1_6_A02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 507
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 146 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 325
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 326 VALPRC*AATSPHHGCC 376
>gb|AW680743.1|AW680743 WS1_6_A02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 558
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 146 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 325
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 326 VALPRC*AATSPHHGCC 376
>gb|AW746483.1|AW746483 WS1_53_B06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 458
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 148 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 327
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 328 VALPRC*AATSPHHGCC 378
>gb|AW747613.1|AW747613 WS1_74_B09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 543
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 139 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 318
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 319 VALPRC*AATSPHHGCC 369
>gb|AW747692.1|AW747692 WS1_75_D09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 469
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 78 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 257
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 258 VALPRC*AATSPHHGCC 308
>gb|AW924425.1|AW924425 WS1_69_C03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 139 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 318
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 319 VALPRC*AATSPHHGCC 369
>gb|AW924687.1|AW924687 WS1_71_B09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 571
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 146 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 325
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 326 VALPRC*AATSPHHGCC 376
>gb|AW924779.1|AW924779 WS1_72_B09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 571
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 146 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 325
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 326 VALPRC*AATSPHHGCC 376
>gb|AW925002.1|AW925002 WS1_74_B09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 404
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 139 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 318
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 319 VALPRC*AATSPHHGCC 369
>gb|BE363712.1|BE363712 WS1_69_C03.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 139 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 318
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 319 VALPRC*AATSPHHGCC 369
>gb|BE363792.1|BE363792 WS1_71_B09.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 491
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 146 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 325
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 326 VALPRC*AATSPHHGCC 376
>gb|BE593752.1|BE593752 WS1_101_G05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 130 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 309
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 310 VALPRC*AATSPHHGCC 360
>gb|BE594064.1|BE594064 WS1_101_G05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 130 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 309
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 310 VALPRC*AATSPHHGCC 360
>gb|CD230418.1|CD230418 SS1_43_A12.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_43_A12_A012 5', mRNA sequence
Length = 555
Score = 108 bits (230), Expect = 8e-023
Identities = 40/90 (44%), Positives = 59/90 (65%)
Frame = +3 / +3
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 165 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 344
Query: 450 IAIPKC*ASALRRRFACSCSCV*HIQLMNK 539
+A+P+C*A+ A + + + + NK
Sbjct: 345 VALPRC*AATSPLITAAASAALSSVSARNK 434
>gb|CD423396.1|CD423396 SA1_23_F06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_23_F06_A002 3', mRNA sequence
Length = 490
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 79 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 258
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 259 VALPRC*AATSPHHGCC 309
>gb|CD423506.1|CD423506 SA1_23_F06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_23_F06_A002 5', mRNA sequence
Length = 583
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 152 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 331
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 332 VALPRC*AATSPHHGCC 382
>gb|CD424643.1|CD424643 SA1_8_C08.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_8_C08_A002 5', mRNA sequence
Length = 564
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 152 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 331
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 332 VALPRC*AATSPHHGCC 382
>gb|CD425419.1|CD425419 SA1_12_G10.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_G10_A002 3', mRNA sequence
Length = 527
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 119 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 298
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 299 VALPRC*AATSPHHGCC 349
>gb|CD425487.1|CD425487 SA1_12_G10.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_G10_A002 5', mRNA sequence
Length = 573
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 159 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 338
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 339 VALPRC*AATSPHHGCC 389
>gb|CD426603.1|CD426603 SA1_21_C03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_C03_A002 5', mRNA sequence
Length = 554
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 152 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 331
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 332 VALPRC*AATSPHHGCC 382
>gb|CD426879.1|CD426879 SA1_25_B01.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_25_B01_A002 5', mRNA sequence
Length = 490
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 152 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 331
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 332 VALPRC*AATSPHHGCC 382
>gb|CD427661.1|CD427661 SA1_37_F08.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_37_F08_A002 5', mRNA sequence
Length = 563
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 145 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 324
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 325 VALPRC*AATSPHHGCC 375
>gb|CD461851.1|CD461851 SA1_31_E11.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_31_E11_A002 3', mRNA sequence
Length = 537
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 147 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 326
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 327 VALPRC*AATSPHHGCC 377
>gb|CN139123.1|CN139123 OX1_16_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_16_D03_A002 3', mRNA sequence
Length = 496
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +3
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 153 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 332
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 333 VALPRC*AATSPHHGCC 383
>gb|CN146416.1|CN146416 WOUND1_41_C07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_41_C07_A002 3', mRNA sequence
Length = 538
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 152 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 331
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 332 VALPRC*AATSPHHGCC 382
>gb|CN146495.1|CN146495 WOUND1_41_C07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_41_C07_A002 5', mRNA sequence
Length = 554
Score = 108 bits (230), Expect = 8e-023
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 140 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 319
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 320 VALPRC*AATSPHHGCC 370
>gb|CN139195.1|CN139195 OX1_16_D03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_16_D03_A002 5', mRNA sequence
Length = 510
Score = 107 bits (229), Expect = 1e-022
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 143 CNAGHLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 322
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 323 VALPRC*AATSPHHGCC 373
>gb|CD428429.1|CD428429 ETH1_31_A06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_31_A06_A002 5', mRNA sequence
Length = 527
Score = 107 bits (228), Expect = 2e-022
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 172 CNAGQLTVCASAMLSGAAPLAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 351
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 352 VALPRC*AATSPHHGCC 402
>gb|CD423088.1|CD423088 SA1_27_F02.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_27_F02_A002 3', mRNA sequence
Length = 541
Score = 106 bits (226), Expect = 3e-022
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +A++P +A+Y+N+PN KT SCG
Sbjct: 152 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAENPAYARYVNSPNARKTVASCG 331
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 332 VALPRC*AATSPHHGCC 382
>gb|CD423201.1|CD423201 SA1_27_F02.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_27_F02_A002 5', mRNA sequence
Length = 562
Score = 106 bits (226), Expect = 3e-022
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +A++P +A+Y+N+PN KT SCG
Sbjct: 152 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAENPAYARYVNSPNARKTVASCG 331
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 332 VALPRC*AATSPHHGCC 382
>gb|AW924891.1|AW924891 WS1_72_B09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 476
Score = 105 bits (225), Expect = 4e-022
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +3 / +3
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCSTL+AQ+ CLC +AK P +A+Y+N+PN K SCG
Sbjct: 72 CNAGQLPVCASAMLSGAAPSAACCSTLKAQQGCLCQFAKTPAYARYVNSPNARKPVASCG 251
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+C*A+ C
Sbjct: 252 VALPRC*AATSPHHGCC 302
>gb|CD427504.1|CD427504 SA1_37_F08.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_37_F08_A002 3', mRNA sequence
Length = 391
Score = 105 bits (225), Expect = 4e-022
Identities = 37/70 (52%), Positives = 51/70 (72%)
Frame = +3 / +1
Query: 291 VCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCGIAIPKC* 470
VC A + GA P+AACCSTL+AQ+ CLC +AK+P +A+Y+N+PN KT SCG+A+P+C*
Sbjct: 1 VCASAMLSGAAPSAACCSTLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCGVALPRC* 180
Query: 471 ASALRRRFAC 500
A+ C
Sbjct: 181 AATSPHHGCC 210
>gb|CF758170.1|CF758170 DSAF1_28_D01.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_28_D01_A011 3', mRNA sequence
Length = 537
Score = 105 bits (223), Expect = 8e-022
Identities = 36/67 (53%), Positives = 50/67 (74%)
Frame = +3 / +1
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 169 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 348
Query: 450 IAIPKC* 470
+A+P+C*
Sbjct: 349 VALPRC* 369
>gb|AW746539.1|AW746539 WS1_53_B06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 407
Score = 103 bits (219), Expect = 3e-021
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L VC A + GA P+AACCS L+AQ+ CLC +AK+P +A+Y+N+PN KT SCG
Sbjct: 11 CNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCG 190
Query: 450 IAIPKC*ASALRRRFAC 500
+A+P+ *A+ C
Sbjct: 191 VALPRX*AATSPHHGCC 241
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 649,326,778
Number of Sequences: 832831
Number of extensions: 8839093
Number of successful extensions: 157391
Number of sequences better than 1.0e-020: 42
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16152279255
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)