TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.1
(614 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots ... 323 2e-087
gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassino... 301 8e-081
gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle... 286 1e-076
gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum b... 188 9e-071
gb|CN146201.1|CN146201 WOUND1_38_C11.g1_A002 Wounded leaves... 173 2e-042
gb|BG052086.1|BG052086 RHIZ2_5_H11.b1_A003 Rhizome2 (RHIZ2)... 171 1e-041
gb|CW386868.1|CW386868 fsbb001f070p13f0 Sorghum methylation... 79 1e-036
gb|CW391887.1|CW391887 fsbb001f078d24k0 Sorghum methylation... 68 2e-031
gb|CW246584.1|CW246584 104_707_11221402_148_35087_039 Sorgh... 123 3e-030
gb|BF586447.1|BF586447 FM1_28_C05.b1_A003 Floral-Induced Me... 122 6e-030
gb|BG158394.1|BG158394 FM1_60_A03.b1_A003 Floral-Induced Me... 122 4e-027
gb|CD229329.1|CD229329 CCC1_14_C10.g1_A007 Callus culture/c... 122 4e-027
gb|CN126844.1|CN126844 RHOH1_19_B08.g1_A002 Acid- and alkal... 122 4e-027
gb|CN134316.1|CN134316 OX1_25_D02.g1_A002 Oxidatively-stres... 122 4e-027
gb|CN135394.1|CN135394 OX1_32_C02.g1_A002 Oxidatively-stres... 122 4e-027
gb|CD213702.1|CD213702 HS1_52_F08.g1_A012 Heat-shocked seed... 122 7e-027
gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sor... 118 8e-026
gb|BE360249.1|BE360249 DG1_62_F05.b1_A002 Dark Grown 1 (DG1... 116 4e-025
gb|CD228893.1|CD228893 CCC1_10_C10.g1_A007 Callus culture/c... 110 3e-023
gb|CX609750.1|CX609750 ANR1_14_B09.g1_A002 Anaerobic roots ... 104 2e-021
gb|CW125776.1|CW125776 104_506_11112522_148_34727_077 Sorgh... 102 4e-021
>gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 5', mRNA sequence
Length = 804
Score = 323 bits (699), Expect = 2e-087
Identities = 129/130 (99%), Positives = 130/130 (100%)
Frame = +3 / +1
Query: 225 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG 404
ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG
Sbjct: 286 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG 465
Query: 405 MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGISGTCDFVKADFMK 584
MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAG+SGTCDFVKADFMK
Sbjct: 466 MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGVSGTCDFVKADFMK 645
Query: 585 MPFDDNTFDA 614
MPFDDNTFDA
Sbjct: 646 MPFDDNTFDA 675
Score = 287 bits (622), Expect = 8e-077
Identities = 126/130 (96%), Positives = 126/130 (96%)
Frame = -2 / -2
Query: 613 ASKVLSSNGIFMKSALTKSHVPLIPAKRLSSFPLVIWYSLLFNPVTEVELNLAISLSGPP 434
ASKVLSSNGIFMKSALTKS VPL PA RLSSFPLVIWYSLLFNPVTEVELNLAISLSGPP
Sbjct: 674 ASKVLSSNGIFMKSALTKSQVPLTPANRLSSFPLVIWYSLLFNPVTEVELNLAISLSGPP 495
Query: 433 IPQPTSKTFIPGFKPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLL 254
IPQPTSKTFIPGFKPSCRARKCS RLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLL
Sbjct: 494 IPQPTSKTFIPGFKPSCRARKCS*RLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLL 315
Query: 253 TISV*LDFLA 224
TISV*LDFLA
Sbjct: 314 TISV*LDFLA 285
Score = 286 bits (619), Expect = 2e-076
Identities = 120/145 (82%), Positives = 125/145 (86%)
Frame = -3 / -3
Query: 612 HQKCCHRTASS*SPP*QNHMFH*FLLNG*APFPWLSGIRCYSIR*LKLS*ILQFLSVVHL 433
HQKC H+ ASS*S P*QNH FH* L *APFPWLSGI CYSI+*LKLS*I Q LS VHL
Sbjct: 673 HQKCYHQMASS*SLP*QNHRFH*LLPTD*APFPWLSGIHCYSIQ*LKLS*ISQSLSAVHL 494
Query: 432 FHSPHLKPSFLVSNQVAGQENAHVA*CFHVRILHSICEQSGRIHPNHTHRS*WQDHSIY* 253
F SPH KPSFLVS+Q AGQENAH A*CFH RILHSICEQSGRIHPNHTHRS*WQDH+I *
Sbjct: 493 FRSPHPKPSFLVSSQAAGQENAHDA*CFHARILHSICEQSGRIHPNHTHRS*WQDHNIC* 314
Query: 252 PYQYSWTSLLPPSLHSIHDISHTHR 178
PYQ SWT LLPPSLH+IHDISHTHR
Sbjct: 313 PYQCSWTFLLPPSLHNIHDISHTHR 239
Score = 279 bits (604), Expect = 2e-074
Identities = 123/146 (84%), Positives = 132/146 (90%)
Frame = -1 / -1
Query: 614 SIKSVVIERHLHEVRLDKITCSTNSC*TVELLSPGYLVFVVIQSGN*S*AKSCNFSQWST 435
SIKSV+I+ HLHEV LDKIT STNSC +ELLSPGYLVF+VIQS N*S*AKS N SQ ST
Sbjct: 675 SIKSVIIKWHLHEVCLDKITGSTNSCQPIELLSPGYLVFIVIQSSN*S*AKSRNLSQRST 496
Query: 434 YSTAHI*NLHSWFQTKLQGKKMLMSLDAFT*GFSIPSVSKVEGFTPTILIEASGKIIVFI 255
YS AHI NLHSWFQ KLQGKKMLM+LDAFT GFSIPSVSKVEGFTPTILIEASGKII+F+
Sbjct: 495 YSAAHIQNLHSWFQAKLQGKKMLMTLDAFTQGFSIPSVSKVEGFTPTILIEASGKIIIFV 316
Query: 254 NHISIVGLPCFLLPSIVSMIFLILID 177
NHIS+VGL CFLLPSI+SMIFLILID
Sbjct: 315 NHISVVGLSCFLLPSIISMIFLILID 238
Score = 209 bits (451), Expect = 3e-053
Identities = 100/128 (78%), Positives = 102/128 (79%)
Frame = +1 / +2
Query: 178 SMSMRNIMDTMEGRRKQGSPTILIWLINTMILPLASMSMVGVNPSTLLTDGMENPYVKAS 357
SMSMRNIMD MEGRRKQ SPT LIWL N MILPLASMSMVGVNPSTLLTDGMENP VKAS
Sbjct: 239 SMSMRNIMDIMEGRRKQESPTTLIWLTNIMILPLASMSMVGVNPSTLLTDGMENPCVKAS 418
Query: 358 SDMSIFLPCNLV*NQE*RF*MWAVE*VDH*EKXXXXXXXXXPD*ITTNTR*PGERSSTV* 537
S MSIFLPC+L *NQE*RF MWA E*VD *E+ D*IT NTR*PGERSS
Sbjct: 419 SVMSIFLPCSLA*NQE*RFWMWAAE*VDR*ERLRDLAQLQLLD*ITMNTR*PGERSSIGW 598
Query: 538 QELVEHVI 561
QELVE VI
Sbjct: 599 QELVEPVI 622
Score = 191 bits (412), Expect(2) = 3e-062
Identities = 79/99 (79%), Positives = 85/99 (85%)
Frame = +2 / +3
Query: 317 CSQMEWRILT*KHQAT*AFSCPATWFETRNEGFRCGLWNRWTTERNCKI*LNFSYRIE*Q 496
CSQMEWRIL *KHQA+*AFSCPA W ETRNEGF CGL NRWT ER+C+I*LNFSY IE*Q
Sbjct: 378 CSQMEWRILA*KHQAS*AFSCPAAWLETRNEGFGCGLRNRWTAERDCEI*LNFSYWIE*Q 557
Query: 497 RIPDNQGKGAQPFSRN*WNM*FCQGGLHEDAVR*QHF*C 613
IPDNQGKGAQ R+*WN+*FCQG LHEDA+ * HF*C
Sbjct: 558 *IPDNQGKGAQSVGRS*WNL*FCQGRLHEDAI***HF*C 674
Score = 68.4 bits (143), Expect(2) = 3e-062
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +2 / +3
Query: 179 R*V*EISWILWREGGSKEVQLY*YG**IL*SCH* 280
R*V*EISWILWREGGSK+VQL+*YG* IL*SCH*
Sbjct: 240 R*V*EISWILWREGGSKKVQLH*YG*QIL*SCH* 341
>gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_C02_A002 5', mRNA sequence
Length = 777
Score = 301 bits (651), Expect = 8e-081
Identities = 121/122 (99%), Positives = 122/122 (100%)
Frame = +3 / +1
Query: 225 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG 404
ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG
Sbjct: 412 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG 591
Query: 405 MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGISGTCDFVKADFMK 584
MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGISGTCDFV+ADFMK
Sbjct: 592 MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGISGTCDFVQADFMK 771
Query: 585 MP 590
MP
Sbjct: 772 MP 777
Score = 297 bits (642), Expect = 1e-079
Identities = 125/138 (90%), Positives = 125/138 (90%)
Frame = -3 / -3
Query: 588 ASS*SPP*QNHMFH*FLLNG*APFPWLSGIRCYSIR*LKLS*ILQFLSVVHLFHSPHLKP 409
A S*S P QNH FH*FL N *APFPWLSG CYSIR*LKLS*ILQFLSVVHLFHSPHLKP
Sbjct: 775 AFS*SLPGQNHRFH*FLPND*APFPWLSGTHCYSIR*LKLS*ILQFLSVVHLFHSPHLKP 596
Query: 408 SFLVSNQVAGQENAHVA*CFHVRILHSICEQSGRIHPNHTHRS*WQDHSIY*PYQYSWTS 229
SFL SNQVAGQENAHVA*CF VRILHSICEQSGRIHPNHTHRS*W DHSIY*PYQYSWT
Sbjct: 595 SFLASNQVAGQENAHVA*CFRVRILHSICEQSGRIHPNHTHRS*WLDHSIY*PYQYSWTF 416
Query: 228 LLPPSLHSIHDISHTHRR 175
LLPPSLHS HDISHTHRR
Sbjct: 415 LLPPSLHSNHDISHTHRR 362
Score = 290 bits (627), Expect = 2e-077
Identities = 127/139 (91%), Positives = 130/139 (93%)
Frame = -1 / -1
Query: 590 RHLHEVRLDKITCSTNSC*TVELLSPGYLVFVVIQSGN*S*AKSCNFSQWSTYSTAHI*N 411
RH HEV LDKIT STNSC T+ELLSPGYLV +VIQSGN*S*AKSCNFSQWSTYSTAHI*N
Sbjct: 777 RHFHEVCLDKITGSTNSCQTIELLSPGYLVLIVIQSGN*S*AKSCNFSQWSTYSTAHI*N 598
Query: 410 LHSWFQTKLQGKKMLMSLDAFT*GFSIPSVSKVEGFTPTILIEASGKIIVFINHISIVGL 231
LHSW QTKLQGKKMLMSLDAF *GFSIPSVSKVEGFTPTILIEASG IIVFINHISIVGL
Sbjct: 597 LHSWLQTKLQGKKMLMSLDAFA*GFSIPSVSKVEGFTPTILIEASG*IIVFINHISIVGL 418
Query: 230 PCFLLPSIVSMIFLILIDG 174
CFLLPSIV+MIFLILIDG
Sbjct: 417 SCFLLPSIVTMIFLILIDG 361
Score = 279 bits (604), Expect = 2e-074
Identities = 120/122 (98%), Positives = 120/122 (98%)
Frame = -2 / -2
Query: 589 GIFMKSALTKSHVPLIPAKRLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKT 410
GIFMKSA TKS VPLIPAKRLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKT
Sbjct: 776 GIFMKSAWTKSQVPLIPAKRLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKT 597
Query: 409 FIPGFKPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDF 230
FIPGFKPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDF
Sbjct: 596 FIPGFKPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDF 417
Query: 229 LA 224
LA
Sbjct: 416 LA 411
Score = 237 bits (513), Expect = 8e-062
Identities = 110/129 (85%), Positives = 112/129 (86%)
Frame = +1 / +2
Query: 175 PSMSMRNIMDTMEGRRKQGSPTILIWLINTMILPLASMSMVGVNPSTLLTDGMENPYVKA 354
PSMSMRNIM TMEGRRKQ SPTILIWLINTMI PLASMSMVGVNPSTLLTDGMENPY KA
Sbjct: 362 PSMSMRNIMVTMEGRRKQESPTILIWLINTMI*PLASMSMVGVNPSTLLTDGMENPYAKA 541
Query: 355 SSDMSIFLPCNLV*NQE*RF*MWAVE*VDH*EKXXXXXXXXXPD*ITTNTR*PGERSSTV 534
SSDMSIFLPCNLV*+QE*RF*MWAVE*VDH*EK PD*IT +TR*PGERSS V
Sbjct: 542 SSDMSIFLPCNLV*SQE*RF*MWAVE*VDH*EKLQDLAQLQLPD*ITMSTR*PGERSSIV 721
Query: 535 *QELVEHVI 561
QELVE VI
Sbjct: 722 WQELVEPVI 748
Score = 206 bits (445), Expect(2) = 3e-067
Identities = 81/91 (89%), Positives = 84/91 (92%)
Frame = +2 / +3
Query: 317 CSQMEWRILT*KHQAT*AFSCPATWFETRNEGFRCGLWNRWTTERNCKI*LNFSYRIE*Q 496
CSQMEWRILT KHQAT*AFSCPATWFE RNEGFRCGLWNRWTTERNCKI*LNFSYRIE*Q
Sbjct: 504 CSQMEWRILTRKHQAT*AFSCPATWFEARNEGFRCGLWNRWTTERNCKI*LNFSYRIE*Q 683
Query: 497 RIPDNQGKGAQPFSRN*WNM*FCQGGLHEDA 589
+PDNQGKGAQ F RN*WN+*FC G LHE+A
Sbjct: 684 *VPDNQGKGAQSFGRN*WNL*FCPGRLHENA 776
Score = 69.8 bits (146), Expect(2) = 3e-067
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2 / +3
Query: 176 RR*V*EISWILWREGGSKEVQLY*YG**IL*SCH* 280
RR*V*EISW+LWREGGSK+VQLY*YG**IL*S H*
Sbjct: 363 RR*V*EISWLLWREGGSKKVQLY*YG**IL*SSH* 467
>gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 286 bits (620), Expect = 1e-076
Identities = 115/116 (99%), Positives = 116/116 (100%)
Frame = +3 / +1
Query: 225 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG 404
ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG
Sbjct: 166 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPG 345
Query: 405 MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGISGTCDFVKA 572
MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAG+SGTCDFVKA
Sbjct: 346 MKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGVSGTCDFVKA 513
Score = 267 bits (578), Expect = 9e-071
Identities = 111/131 (84%), Positives = 115/131 (87%)
Frame = -3 / -2
Query: 570 P*QNHMFH*FLLNG*APFPWLSGIRCYSIR*LKLS*ILQFLSVVHLFHSPHLKPSFLVSN 391
P*QNH FH* L *APFPWLSGI CYSI+*LKLS*ILQ LS VHLF SPH KPSFLVS+
Sbjct: 511 P*QNHRFH*LLPTD*APFPWLSGIHCYSIQ*LKLS*ILQSLSAVHLFRSPHPKPSFLVSS 332
Query: 390 QVAGQENAHVA*CFHVRILHSICEQSGRIHPNHTHRS*WQDHSIY*PYQYSWTSLLPPSL 211
Q AGQENAH A*CFH RILHSICEQSGRIHPNHTHRS*WQDH+I *PYQ SWT LLPPSL
Sbjct: 331 QAAGQENAHDA*CFHARILHSICEQSGRIHPNHTHRS*WQDHNIC*PYQCSWTFLLPPSL 152
Query: 210 HSIHDISHTHR 178
H+IHDISHTHR
Sbjct: 151 HNIHDISHTHR 119
Score = 261 bits (564), Expect = 8e-069
Identities = 113/131 (86%), Positives = 120/131 (91%)
Frame = -1 / -3
Query: 569 LDKITCSTNSC*TVELLSPGYLVFVVIQSGN*S*AKSCNFSQWSTYSTAHI*NLHSWFQT 390
LDKIT STNSC +ELLSPGYLVF+VIQS N*S*AKSCN SQ STYS AHI NLHSWFQ
Sbjct: 510 LDKITGSTNSCQPIELLSPGYLVFIVIQSSN*S*AKSCNLSQRSTYSAAHIQNLHSWFQA 331
Query: 389 KLQGKKMLMSLDAFT*GFSIPSVSKVEGFTPTILIEASGKIIVFINHISIVGLPCFLLPS 210
KLQGKKMLM+LDAFT GFSIPSVSKVEGFTPTILIEASGKII+F+NHIS+VGL CFLLPS
Sbjct: 330 KLQGKKMLMTLDAFTQGFSIPSVSKVEGFTPTILIEASGKIIIFVNHISVVGLSCFLLPS 151
Query: 209 IVSMIFLILID 177
I+SMIFLILID
Sbjct: 150 IISMIFLILID 118
Score = 259 bits (561), Expect = 2e-068
Identities = 113/117 (96%), Positives = 113/117 (96%)
Frame = -2 / -1
Query: 574 SALTKSHVPLIPAKRLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGF 395
SALTKS VPL PA RLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGF
Sbjct: 515 SALTKSQVPLTPANRLSSFPLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGF 336
Query: 394 KPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDFLA 224
KPSCRARKCS RLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDFLA
Sbjct: 335 KPSCRARKCS*RLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDFLA 165
Score = 209 bits (451), Expect = 3e-053
Identities = 100/128 (78%), Positives = 102/128 (79%)
Frame = +1 / +2
Query: 178 SMSMRNIMDTMEGRRKQGSPTILIWLINTMILPLASMSMVGVNPSTLLTDGMENPYVKAS 357
SMSMRNIMD MEGRRKQ SPT LIWL N MILPLASMSMVGVNPSTLLTDGMENP VKAS
Sbjct: 119 SMSMRNIMDIMEGRRKQESPTTLIWLTNIMILPLASMSMVGVNPSTLLTDGMENPCVKAS 298
Query: 358 SDMSIFLPCNLV*NQE*RF*MWAVE*VDH*EKXXXXXXXXXPD*ITTNTR*PGERSSTV* 537
S MSIFLPC+L *NQE*RF MWA E*VD *E+ D*IT NTR*PGERSS
Sbjct: 299 SVMSIFLPCSLA*NQE*RFWMWAAE*VDR*ERLQDLAQLQLLD*ITMNTR*PGERSSIGW 478
Query: 538 QELVEHVI 561
QELVE VI
Sbjct: 479 QELVEPVI 502
Score = 172 bits (371), Expect(2) = 1e-056
Identities = 70/85 (82%), Positives = 74/85 (87%)
Frame = +2 / +3
Query: 317 CSQMEWRILT*KHQAT*AFSCPATWFETRNEGFRCGLWNRWTTERNCKI*LNFSYRIE*Q 496
CSQMEWRIL *KHQA+*AFSCPA W ETRNEGF CGL NRWT ER+CKI*LNFSY IE*Q
Sbjct: 258 CSQMEWRILA*KHQAS*AFSCPAAWLETRNEGFGCGLRNRWTAERDCKI*LNFSYWIE*Q 437
Query: 497 RIPDNQGKGAQPFSRN*WNM*FCQG 571
IPDNQGKGAQ R+*WN+*FCQG
Sbjct: 438 *IPDNQGKGAQSVGRS*WNL*FCQG 512
Score = 68.4 bits (143), Expect(2) = 1e-056
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +2 / +3
Query: 179 R*V*EISWILWREGGSKEVQLY*YG**IL*SCH* 280
R*V*EISWILWREGGSK+VQL+*YG* IL*SCH*
Sbjct: 120 R*V*EISWILWREGGSKKVQLH*YG*QIL*SCH* 221
>gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 5', mRNA sequence
Length = 738
Score = 188 bits (405), Expect(2) = 6e-066
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +3 / +1
Query: 294 GWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCGIGGPLREIARFSST 473
GWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCGIGGPLREIARFSST
Sbjct: 514 GWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCGIGGPLREIARFSST 693
Query: 474 SVTGLNNNEYQITRG 518
SVTGLNNNEYQITRG
Sbjct: 694 SVTGLNNNEYQITRG 738
Score = 188 bits (404), Expect(2) = 9e-071
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = -2 / -2
Query: 517 PLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGFKPSCRARKCSCRLMLSRKD 338
PLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGFKPSCRARKCSCRLMLSRKD
Sbjct: 737 PLVIWYSLLFNPVTEVELNLAISLSGPPIPQPTSKTFIPGFKPSCRARKCSCRLMLSRKD 558
Query: 337 SPFHL*AKWKDSPQP 293
SPFHL*AKWKDSPQP
Sbjct: 557 SPFHL*AKWKDSPQP 513
Score = 168 bits (362), Expect(2) = 1e-059
Identities = 70/74 (94%), Positives = 70/74 (94%)
Frame = -3 / -3
Query: 516 PWLSGIRCYSIR*LKLS*ILQFLSVVHLFHSPHLKPSFLVSNQVAGQENAHVA*CFHVRI 337
PWLSG CYSIR*LKLS*ILQFLSVVHLFHSPHLKPSFL SNQVAGQENAHVA*CF VRI
Sbjct: 736 PWLSGTHCYSIR*LKLS*ILQFLSVVHLFHSPHLKPSFLASNQVAGQENAHVA*CFRVRI 557
Query: 336 LHSICEQSGRIHPN 295
LHSICEQSGRIHPN
Sbjct: 556 LHSICEQSGRIHPN 515
Score = 167 bits (360), Expect(2) = 1e-050
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = -1 / -1
Query: 518 SPGYLVFVVIQSGN*S*AKSCNFSQWSTYSTAHI*NLHSWFQTKLQGKKMLMSLDAFT*G 339
SPGYLV +VIQSGN*S*AKSCNFSQWSTYSTAHI*NLHSW QTKLQGKKMLMSLDAF *G
Sbjct: 738 SPGYLVLIVIQSGN*S*AKSCNFSQWSTYSTAHI*NLHSWLQTKLQGKKMLMSLDAFA*G 559
Query: 338 FSIPSVSKVEGFTPT 294
FSIPSVSKVEGFTPT
Sbjct: 558 FSIPSVSKVEGFTPT 514
Score = 162 bits (348), Expect(2) = 7e-054
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2 / +3
Query: 317 CSQMEWRILT*KHQAT*AFSCPATWFETRNEGFRCGLWNRWTTERNCKI*LNFSYRIE*Q 496
CSQMEWRILT KHQAT*AFSCPATWFE RNEGFRCGLWNRWTTERNCKI*LNFSYRIE*Q
Sbjct: 537 CSQMEWRILTRKHQAT*AFSCPATWFEARNEGFRCGLWNRWTTERNCKI*LNFSYRIE*Q 716
Query: 497 RIPDNQG 517
+PDNQG
Sbjct: 717 *VPDNQG 737
Score = 135 bits (290), Expect(2) = 3e-044
Identities = 61/74 (82%), Positives = 63/74 (85%)
Frame = +1 / +2
Query: 295 VGVNPSTLLTDGMENPYVKASSDMSIFLPCNLV*NQE*RF*MWAVE*VDH*EKXXXXXXX 474
VGVNPSTLLTDGMENPY KASSDMSIFLPCNLV*+QE*RF*MWAVE*VDH*EK
Sbjct: 515 VGVNPSTLLTDGMENPYAKASSDMSIFLPCNLV*SQE*RF*MWAVE*VDH*EKLQDLAQL 694
Query: 475 XXPD*ITTNTR*PG 516
PD*IT +TR*PG
Sbjct: 695 QLPD*ITMSTR*PG 736
Score = 100 bits (213), Expect(2) = 9e-071
Identities = 38/42 (90%), Positives = 38/42 (90%)
Frame = -3 / -1
Query: 300 PNHTHRS*WQDHSIY*PYQYSWTSLLPPSLHSIHDISHTHRR 175
P HTHRS*W DHSIY*PYQYSWT LLPPSLHS HDISHTHRR
Sbjct: 519 PTHTHRS*WLDHSIY*PYQYSWTFLLPPSLHSNHDISHTHRR 394
Score = 84.0 bits (177), Expect(2) = 6e-066
Identities = 37/40 (92%), Positives = 37/40 (92%)
Frame = +1 / +1
Query: 175 PSMSMRNIMDTMEGRRKQGSPTILIWLINTMILPLASMSM 294
PSMSMRNIM TMEGRRKQ SPTILIWLINTMI PLASMSM
Sbjct: 394 PSMSMRNIMVTMEGRRKQESPTILIWLINTMI*PLASMSM 513
Score = 82.6 bits (174), Expect(2) = 1e-059
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -1 / -2
Query: 293 ILIEASGKIIVFINHISIVGLPCFLLPSIVSMIFLILIDG 174
ILIEASG IIVFINHISIVGL CFLLPSIV+MIFLILIDG
Sbjct: 512 ILIEASG*IIVFINHISIVGLSCFLLPSIVTMIFLILIDG 393
Score = 69.8 bits (146), Expect(2) = 7e-054
Identities = 32/35 (91%), Positives = 34/35 (97%)
Frame = +2 / +2
Query: 176 RR*V*EISWILWREGGSKEVQLY*YG**IL*SCH* 280
RR*V*EISW+LWREGGSK+VQLY*YG**IL*S H*
Sbjct: 395 RR*V*EISWLLWREGGSKKVQLY*YG**IL*SSH* 499
Score = 64.3 bits (134), Expect(2) = 3e-044
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = +3 / +3
Query: 225 ARKSNYTDMVNKYYDLATSFYEYGWG 302
ARKSNYTDMVNKYYDLATSFYEYG G
Sbjct: 444 ARKSNYTDMVNKYYDLATSFYEYGLG 521
Score = 53.3 bits (110), Expect(2) = 1e-050
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -2 / -3
Query: 301 PQPYS*KLVARS*YLLTISV*LDFLA 224
P PYS*KLVARS*YLLTISV*LDFLA
Sbjct: 520 PNPYS*KLVARS*YLLTISV*LDFLA 443
>gb|CN146201.1|CN146201 WOUND1_38_C11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_38_C11_A002 5', mRNA sequence
Length = 607
Score = 173 bits (372), Expect = 2e-042
Identities = 69/74 (93%), Positives = 69/74 (93%)
Frame = -3 / -1
Query: 396 SNQVAGQENAHVA*CFHVRILHSICEQSGRIHPNHTHRS*WQDHSIY*PYQYSWTSLLPP 217
SNQVAGQENAHVA*CF VRILHSICEQSGRIHPNHTHRS*W DHSIY*PY YSWT LLPP
Sbjct: 604 SNQVAGQENAHVA*CFRVRILHSICEQSGRIHPNHTHRS*WLDHSIY*PYLYSWTFLLPP 425
Query: 216 SLHSIHDISHTHRR 175
SLHS HDISHTHRR
Sbjct: 424 SLHSNHDISHTHRR 383
Score = 158 bits (340), Expect = 6e-038
Identities = 69/75 (92%), Positives = 70/75 (93%)
Frame = +1 / +2
Query: 175 PSMSMRNIMDTMEGRRKQGSPTILIWLINTMILPLASMSMVGVNPSTLLTDGMENPYVKA 354
PSMSMRNIM TMEGRRKQ SPTI IWLINTMI PLASMSMVGVNPSTLLTDGMENPY KA
Sbjct: 383 PSMSMRNIMVTMEGRRKQESPTIQIWLINTMI*PLASMSMVGVNPSTLLTDGMENPYAKA 562
Query: 355 SSDMSIFLPCNLV*N 399
SSDMSIFLPCNLV*+
Sbjct: 563 SSDMSIFLPCNLV*S 607
Score = 154 bits (330), Expect = 1e-036
Identities = 69/74 (93%), Positives = 70/74 (94%)
Frame = -1 / -2
Query: 395 QTKLQGKKMLMSLDAFT*GFSIPSVSKVEGFTPTILIEASGKIIVFINHISIVGLPCFLL 216
QTKLQGKKMLMSLDAF *GFSIPSVSKVEGFTPTILIEASG IIVFINHI IVGL CFLL
Sbjct: 603 QTKLQGKKMLMSLDAFA*GFSIPSVSKVEGFTPTILIEASG*IIVFINHICIVGLSCFLL 424
Query: 215 PSIVSMIFLILIDG 174
PSIV+MIFLILIDG
Sbjct: 423 PSIVTMIFLILIDG 382
Score = 147 bits (316), Expect = 1e-034
Identities = 57/58 (98%), Positives = 57/58 (98%)
Frame = +3 / +1
Query: 225 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLK 398
ARKSNYTDMVNKYYDL TSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLK
Sbjct: 433 ARKSNYTDMVNKYYDLTTSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLK 606
Score = 133 bits (286), Expect = 2e-030
Identities = 57/58 (98%), Positives = 57/58 (98%)
Frame = -2 / -3
Query: 397 FKPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDFLA 224
FKPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLV RS*YLLTISV*LDFLA
Sbjct: 605 FKPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVVRS*YLLTISV*LDFLA 432
Score = 68.0 bits (142), Expect(2) = 8e-025
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +2 / +3
Query: 317 CSQMEWRILT*KHQAT*AFSCPATWFE 397
CSQMEWRILT KHQAT*AFSCPATWFE
Sbjct: 525 CSQMEWRILTRKHQAT*AFSCPATWFE 605
Score = 66.6 bits (139), Expect(2) = 8e-025
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2 / +3
Query: 176 RR*V*EISWILWREGGSKEVQLY*YG**IL*SCH* 280
RR*V*EISW+LWREGGSK+VQLY YG**IL*S H*
Sbjct: 384 RR*V*EISWLLWREGGSKKVQLYRYG**IL*SNH* 488
>gb|BG052086.1|BG052086 RHIZ2_5_H11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 517
Score = 171 bits (367), Expect = 1e-041
Identities = 69/75 (92%), Positives = 69/75 (92%)
Frame = -3 / -1
Query: 399 VSNQVAGQENAHVA*CFHVRILHSICEQSGRIHPNHTHRS*WQDHSIY*PYQYSWTSLLP 220
VS QVAGQENAHVA*CF VRILHSICEQSGRIHPNHTHRS*W DHSIY*PYQYSWT LLP
Sbjct: 517 VSIQVAGQENAHVA*CFRVRILHSICEQSGRIHPNHTHRS*WLDHSIY*PYQYSWTFLLP 338
Query: 219 PSLHSIHDISHTHRR 175
PSLHS HDISHTH R
Sbjct: 337 PSLHSNHDISHTHGR 293
Score = 160 bits (344), Expect = 2e-038
Identities = 70/75 (93%), Positives = 70/75 (93%)
Frame = +1 / +2
Query: 175 PSMSMRNIMDTMEGRRKQGSPTILIWLINTMILPLASMSMVGVNPSTLLTDGMENPYVKA 354
PSMSMRNIM TMEGRRKQ SPTILIWLINTMI PLASMSMVGVNPSTLLTDGMENPY KA
Sbjct: 293 PSMSMRNIMVTMEGRRKQESPTILIWLINTMI*PLASMSMVGVNPSTLLTDGMENPYAKA 472
Query: 355 SSDMSIFLPCNLV*N 399
SSDMSIFLPCNL *N
Sbjct: 473 SSDMSIFLPCNLD*N 517
Score = 155 bits (334), Expect = 4e-037
Identities = 69/75 (92%), Positives = 72/75 (96%)
Frame = -1 / -2
Query: 398 FQTKLQGKKMLMSLDAFT*GFSIPSVSKVEGFTPTILIEASGKIIVFINHISIVGLPCFL 219
FQ+KLQGKKMLMSLDAF *GFSIPSVSKVEGFTPTILIEASG IIVFINHISIVGL CFL
Sbjct: 516 FQSKLQGKKMLMSLDAFA*GFSIPSVSKVEGFTPTILIEASG*IIVFINHISIVGLSCFL 337
Query: 218 LPSIVSMIFLILIDG 174
LPSIV+MIFLIL+DG
Sbjct: 336 LPSIVTMIFLILMDG 292
Score = 149 bits (320), Expect = 4e-035
Identities = 58/58 (100%), Positives = 58/58 (100%)
Frame = +3 / +1
Query: 225 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLK 398
ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLK
Sbjct: 343 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLK 516
Score = 133 bits (285), Expect = 2e-030
Identities = 57/58 (98%), Positives = 57/58 (98%)
Frame = -2 / -3
Query: 397 FKPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDFLA 224
F PSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDFLA
Sbjct: 515 FNPSCRARKCSCRLMLSRKDSPFHL*AKWKDSPQPYS*KLVARS*YLLTISV*LDFLA 342
Score = 66.6 bits (139), Expect(2) = 6e-024
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2 / +3
Query: 176 RR*V*EISWILWREGGSKEVQLY*YG**IL*SCH* 280
R *V*EISW+LWREGGSK+VQLY*YG**IL*S H*
Sbjct: 294 RP*V*EISWLLWREGGSKKVQLY*YG**IL*SSH* 398
Score = 65.2 bits (136), Expect(2) = 6e-024
Identities = 25/27 (92%), Positives = 25/27 (92%)
Frame = +2 / +3
Query: 317 CSQMEWRILT*KHQAT*AFSCPATWFE 397
CSQMEWRILT KHQAT*AFSCPATW E
Sbjct: 435 CSQMEWRILTRKHQAT*AFSCPATWIE 515
>gb|CW386868.1|CW386868 fsbb001f070p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070p13, DNA
sequence
Length = 695
Score = 79.4 bits (167), Expect(3) = 1e-036
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -2 / -3
Query: 412 TFIPGFKPSCRARKCSCRLMLSRKDSPFHL 323
TFIPGFKPSCRARKCSCRLMLSRKDSPFHL
Sbjct: 435 TFIPGFKPSCRARKCSCRLMLSRKDSPFHL 346
Score = 69.8 bits (146), Expect(3) = 5e-036
Identities = 27/29 (93%), Positives = 27/29 (93%)
Frame = +2 / +1
Query: 326 MEWRILT*KHQAT*AFSCPATWFETRNEG 412
MEWRILT KHQAT*AFSCPATWFE RNEG
Sbjct: 349 MEWRILTRKHQAT*AFSCPATWFEARNEG 435
Score = 69.8 bits (146), Expect(3) = 5e-036
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3 / +3
Query: 252 VNKYYDLATSFYEYGWGESFHFAHR 326
VNKYYDLATSFYEYGWGESFHFAHR
Sbjct: 108 VNKYYDLATSFYEYGWGESFHFAHR 182
Score = 66.6 bits (139), Expect(3) = 4e-027
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +1 / +3
Query: 316 LLTDGMENPYVKASSDMSIFLPCNLV*NQE*R 411
++ DGMENPY KASSDMSIFLPCNLV*+QE*R
Sbjct: 339 IMLDGMENPYAKASSDMSIFLPCNLV*SQE*R 434
Score = 66.1 bits (138), Expect(3) = 2e-030
Identities = 27/30 (90%), Positives = 28/30 (93%)
Frame = -1 / -2
Query: 413 NLHSWFQTKLQGKKMLMSLDAFT*GFSIPS 324
+LHSW QTKLQGKKMLMSLDAF *GFSIPS
Sbjct: 436 DLHSWLQTKLQGKKMLMSLDAFA*GFSIPS 347
Score = 65.7 bits (137), Expect(3) = 1e-036
Identities = 26/34 (76%), Positives = 27/34 (79%)
Frame = -3 / -3
Query: 324 CEQSGRIHPNHTHRS*WQDHSIY*PYQYSWTSLL 223
CEQSGRIHPNHTHRS*W DHSIY*P + LL
Sbjct: 180 CEQSGRIHPNHTHRS*WLDHSIY*PEKSGKCQLL 79
Score = 64.8 bits (135), Expect(3) = 1e-026
Identities = 27/29 (93%), Positives = 27/29 (93%)
Frame = -3 / -1
Query: 411 PSFLVSNQVAGQENAHVA*CFHVRILHSI 325
PSFL SNQVAGQENAHVA*CF VRILHSI
Sbjct: 434 PSFLASNQVAGQENAHVA*CFRVRILHSI 348
Score = 60.6 bits (126), Expect(3) = 2e-030
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = -2 / -2
Query: 328 HL*AKWKDSPQPYS*KLVARS*YLLT 251
HL*AKWKDSPQPYS*KLVARS*YLLT
Sbjct: 184 HL*AKWKDSPQPYS*KLVARS*YLLT 107
Score = 52.8 bits (109), Expect(3) = 5e-036
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = +2 / +1
Query: 392 FETRNEGFRCGLWNRWTTERNCKI 463
F GFRCGLWN WTTERNCKI
Sbjct: 502 FHLSTVGFRCGLWNTWTTERNCKI 573
Score = 51.5 bits (106), Expect(3) = 1e-026
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = -1 / -1
Query: 323 VSKVEGFTPTILIEASGKIIVFIN 252
VSKVEGFTPTILIEASG IIVFIN
Sbjct: 179 VSKVEGFTPTILIEASG*IIVFIN 108
Score = 51.5 bits (106), Expect(3) = 4e-027
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1 / +1
Query: 253 LINTMILPLASMSMVGVNPSTLLT 324
LINTMI PLASMSMVGVNPSTLLT
Sbjct: 109 LINTMI*PLASMSMVGVNPSTLLT 180
Score = 49.6 bits (102), Expect(3) = 1e-036
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -1 / -2
Query: 464 KSCNFSQWSTYSTAHI*NL 408
KSCNFSQWSTYSTAHI*NL
Sbjct: 574 KSCNFSQWSTYSTAHI*NL 518
Score = 46.9 bits (96), Expect(3) = 2e-030
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = -3 / -1
Query: 468 S*ILQFLSVVHLFHSPHLKPS 406
+*ILQFLSVVH+FHSPHLKP+
Sbjct: 578 T*ILQFLSVVHVFHSPHLKPT 516
Score = 44.1 bits (90), Expect(3) = 4e-027
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3 / +2
Query: 411 VLDVGCGIGGPLREIARFSSTSV 479
VLDVGCGI GPLREIARF+ S+
Sbjct: 521 VLDVGCGIRGPLREIARFTFDSL 589
Score = 44.1 bits (90), Expect(3) = 1e-026
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -2 / -3
Query: 475 EVELNLAISLSGPPIPQPTSKTF 407
E +NLAISLSGP IPQPTSKT+
Sbjct: 585 ESNVNLAISLSGPRIPQPTSKTY 517
>gb|CW391887.1|CW391887 fsbb001f078d24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 725
Score = 68.0 bits (142), Expect(3) = 2e-031
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = -2 / -2
Query: 412 TFIPGFKPSCRARKCSCRLMLSRKDSPFHL 323
TFIPGFKPSCRARKCS RLMLSRKD FHL
Sbjct: 370 TFIPGFKPSCRARKCS*RLMLSRKDKTFHL 281
Score = 68.0 bits (142), Expect(3) = 1e-029
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +3 / +3
Query: 255 NKYYDLATSFYEYGWGESFHFAHR 326
NKYYDLATSFYEYGWGESFHFAHR
Sbjct: 57 NKYYDLATSFYEYGWGESFHFAHR 128
Score = 60.2 bits (125), Expect(3) = 2e-031
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / -3
Query: 324 CEQSGRIHPNHTHRS*WQDHSI 259
CEQSGRIHPNHTHRS*WQDH+I
Sbjct: 126 CEQSGRIHPNHTHRS*WQDHNI 61
Score = 59.3 bits (123), Expect(3) = 2e-024
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -1 / -1
Query: 413 NLHSWFQTKLQGKKMLMSLDAFT*GFSIPS 324
+LHSWFQ KLQGKKMLM+LDAFT G +IPS
Sbjct: 371 DLHSWFQAKLQGKKMLMTLDAFTQG*NIPS 282
Score = 58.3 bits (121), Expect(3) = 2e-024
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -2 / -2
Query: 328 HL*AKWKDSPQPYS*KLVARS*YLL 254
HL*AKWKDSPQPYS*KLVARS*YLL
Sbjct: 130 HL*AKWKDSPQPYS*KLVARS*YLL 56
Score = 58.3 bits (121), Expect(3) = 2e-022
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / -3
Query: 411 PSFLVSNQVAGQENAHVA*CFHVRILHSI 325
PSFLVS+Q AGQENAH A*CFH RI HSI
Sbjct: 369 PSFLVSSQAAGQENAHDA*CFHARIKHSI 283
Score = 55.6 bits (115), Expect(3) = 1e-029
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +2 / +2
Query: 326 MEWRILT*KHQAT*AFSCPATWFETRNEG 412
ME IL *KHQA+*AFSCPA W ETRNEG
Sbjct: 284 MECFILA*KHQAS*AFSCPAAWLETRNEG 370
Score = 52.8 bits (109), Expect(3) = 4e-022
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +1 / +1
Query: 241 ILIWLINTMILPLASMSMVGVNPSTLLT 324
++ +L N MILPLASMSMVGVNPSTLLT
Sbjct: 43 LIFYLTNIMILPLASMSMVGVNPSTLLT 126
Score = 51.9 bits (107), Expect(3) = 2e-022
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = -1 / -1
Query: 323 VSKVEGFTPTILIEASGKIIVFI 255
VSKVEGFTPTILIEASGKII+F+
Sbjct: 125 VSKVEGFTPTILIEASGKIIIFV 57
Score = 51.0 bits (105), Expect(3) = 4e-022
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +1 / +1
Query: 316 LLTDGMENPYVKASSDMSIFLPCNLV*NQE*R 411
++ DGM P VKASS MSIFLPC+L *NQE*R
Sbjct: 274 IMLDGMFYPCVKASSVMSIFLPCSLA*NQE*R 369
Score = 49.2 bits (101), Expect(3) = 2e-031
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = -2 / -3
Query: 469 ELNLAISLSGPPIPQPTSKTF 407
+LNLAISLSGPPIPQPTSKT+
Sbjct: 516 DLNLAISLSGPPIPQPTSKTY 454
Score = 47.8 bits (98), Expect(3) = 1e-029
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3 / +2
Query: 411 VLDVGCGIGGPLREIARFSS 470
VLDVGCGIGGPLREIARF S
Sbjct: 458 VLDVGCGIGGPLREIARFRS 517
Score = 41.4 bits (84), Expect(3) = 4e-022
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2 / +1
Query: 410 GFRCGLWNRWTTERNCKI*L 469
GF CGL NRWT ER+CKI*+
Sbjct: 457 GFGCGLRNRWTAERDCKI*V 516
Score = 35.9 bits (72), Expect(3) = 2e-022
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = -1 / -2
Query: 464 KSCNFSQWSTYSTAHI*NL 408
KSCN SQ STYS AHI NL
Sbjct: 511 KSCNLSQRSTYSAAHIQNL 455
Score = 35.9 bits (72), Expect(3) = 2e-024
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -3 / -1
Query: 468 S*ILQFLSVVHLFHSPHLKPS 406
+*ILQ LS VHLF SPH KP+
Sbjct: 515 T*ILQSLSAVHLFRSPHPKPT 453
>gb|CW246584.1|CW246584 104_707_11221402_148_35087_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221402, DNA
sequence
Length = 634
Score = 123 bits (264), Expect(2) = 3e-030
Identities = 47/98 (47%), Positives = 68/98 (69%)
Frame = +3 / -2
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 591 VDTFYNLVTDIYEWGWGQSFHFSPSLTGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 412
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGI 545
+GGP+R IA S ++V G+ NEYQ+ R + NR AG+
Sbjct: 411 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGL 298
Score = 29.0 bits (57), Expect(2) = 3e-030
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3 / -2
Query: 546 SGTCDFVKADFMKMPFDDNTFD 611
S C+ V +F+ MPF D +FD
Sbjct: 294 SPRCEVVCGNFLSMPFPDGSFD 229
>gb|BF586447.1|BF586447 FM1_28_C05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 425
Score = 122 bits (262), Expect(2) = 6e-030
Identities = 47/98 (47%), Positives = 68/98 (69%)
Frame = +3 / +3
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 39 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 218
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGI 545
+GGP+R IA S ++V G+ NEYQ+ R + NR AG+
Sbjct: 219 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGL 332
Score = 29.0 bits (57), Expect(2) = 6e-030
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3 / +3
Query: 546 SGTCDFVKADFMKMPFDDNTFD 611
S C+ V +F+ MPF D +FD
Sbjct: 336 SPRCEVVCGNFLSMPFPDGSFD 401
>gb|BG158394.1|BG158394 FM1_60_A03.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 364
Score = 122 bits (262), Expect = 4e-027
Identities = 47/98 (47%), Positives = 68/98 (69%)
Frame = +3 / +3
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 39 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 218
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGI 545
+GGP+R IA S ++V G+ NEYQ+ R + NR AG+
Sbjct: 219 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGL 332
>gb|CD229329.1|CD229329 CCC1_14_C10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_14_C10_A007 5', mRNA sequence
Length = 663
Score = 122 bits (262), Expect = 4e-027
Identities = 47/98 (47%), Positives = 68/98 (69%)
Frame = +3 / +2
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 332 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 511
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGI 545
+GGP+R IA S ++V G+ NEYQ+ R + NR AG+
Sbjct: 512 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGL 625
>gb|CN126844.1|CN126844 RHOH1_19_B08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_B08_A002 5', mRNA sequence
Length = 745
Score = 122 bits (262), Expect = 4e-027
Identities = 47/98 (47%), Positives = 68/98 (69%)
Frame = +3 / +3
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 321 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 500
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGI 545
+GGP+R IA S ++V G+ NEYQ+ R + NR AG+
Sbjct: 501 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGL 614
>gb|CN134316.1|CN134316 OX1_25_D02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_25_D02_A002 5', mRNA sequence
Length = 685
Score = 122 bits (262), Expect = 4e-027
Identities = 47/98 (47%), Positives = 68/98 (69%)
Frame = +3 / +2
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 326 VDTFYNLVTDLYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 505
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGI 545
+GGP+R IA S ++V G+ NEYQ+ R + NR AG+
Sbjct: 506 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGL 619
>gb|CN135394.1|CN135394 OX1_32_C02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_32_C02_A002 5', mRNA sequence
Length = 685
Score = 122 bits (262), Expect = 4e-027
Identities = 47/98 (47%), Positives = 68/98 (69%)
Frame = +3 / +2
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 338 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 517
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAGI 545
+GGP+R IA S ++V G+ NEYQ+ R + NR AG+
Sbjct: 518 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGL 631
>gb|CD213702.1|CD213702 HS1_52_F08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_F08_A012 5', mRNA sequence
Length = 659
Score = 122 bits (260), Expect = 7e-027
Identities = 47/97 (48%), Positives = 67/97 (69%)
Frame = +3 / +3
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 369 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 548
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELNRLAG 542
+GGP+R IA S ++V G+ NEYQ+ R + NR AG
Sbjct: 549 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAG 659
>gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 118 bits (252), Expect = 8e-026
Identities = 44/56 (78%), Positives = 51/56 (91%)
Frame = +3 / +3
Query: 225 ARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLG 392
+RKSNYTD+VNKYYDLAT FYEYGWG+SFHFA R+ GE+ RE+IKRHEH +ALQLG
Sbjct: 459 SRKSNYTDLVNKYYDLATGFYEYGWGDSFHFAGRYPGETFREAIKRHEHXIALQLG 626
>gb|BE360249.1|BE360249 DG1_62_F05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 584
Score = 116 bits (247), Expect = 4e-025
Identities = 44/93 (47%), Positives = 64/93 (68%)
Frame = +3 / +2
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 305 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 484
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITRGKELN 530
+GGP+R IA S ++V G+ NEYQ+ R + N
Sbjct: 485 VGGPMRAIAAHSGSNVVGITINEYQVNRARAHN 583
>gb|CD228893.1|CD228893 CCC1_10_C10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_C10_A007 5', mRNA sequence
Length = 589
Score = 110 bits (234), Expect = 3e-023
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = +3 / +3
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 321 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 500
Query: 432 IGGPLREIARFSSTSVTGLNNNEYQITR 515
+ GP+R IA S ++V G+ NEYQ+ R
Sbjct: 501 VCGPMRAIAAHSGSNVVGITINEYQVNR 584
>gb|CX609750.1|CX609750 ANR1_14_B09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_B09_A002 5', mRNA sequence
Length = 508
Score = 104 bits (221), Expect = 2e-021
Identities = 39/43 (90%), Positives = 39/43 (90%)
Frame = -3 / -1
Query: 303 HPNHTHRS*WQDHSIY*PYQYSWTSLLPPSLHSIHDISHTHRR 175
HPNHTHRS*W DHSIY*PYQYSWT LPPSLHS HDISHTHRR
Sbjct: 508 HPNHTHRS*WLDHSIY*PYQYSWTFSLPPSLHSNHDISHTHRR 380
>gb|CW125776.1|CW125776 104_506_11112522_148_34727_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112522, DNA
sequence
Length = 511
Score = 102 bits (218), Expect = 4e-021
Identities = 39/82 (47%), Positives = 57/82 (69%)
Frame = +3 / -2
Query: 252 VNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGLKPGMKVLDVGCG 431
V+ +Y+L T YE+GWG+SFHF+ G S R++ + HE +A LG +PG ++LDVGCG
Sbjct: 246 VDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHRDATRVHEERVADLLGARPGHRLLDVGCG 67
Query: 432 IGGPLREIARFSSTSVTGLNNN 497
+GGP+R IA S ++V G+ N
Sbjct: 66 VGGPMRAIAAHSGSNVVGITIN 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 627,553,680
Number of Sequences: 832831
Number of extensions: 8612689
Number of successful extensions: 86064
Number of sequences better than 1.0e-020: 22
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18066623463
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)