TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405117.2.2
(800 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL157536.1|CL157536 104_345_10783651_114_31477_211 Sorgh... 145 7e-066
gb|CN139453.1|CN139453 OX1_22_E01.b1_A002 Oxidatively-stres... 145 7e-066
gb|AW672235.1|AW672235 LG1_358_E01.b1_A002 Light Grown 1 (L... 133 3e-062
gb|CW118138.1|CW118138 104_494_11108040_148_34621_088 Sorgh... 119 1e-045
gb|CN131344.1|CN131344 RHOH1_47_H10.b1_A002 Acid- and alkal... 120 7e-045
gb|BE355488.1|BE355488 DG1_114_G02.g1_A002 Dark Grown 1 (DG... 120 7e-045
gb|BE361712.1|BE361712 DG1_81_C11.g1_A002 Dark Grown 1 (DG1... 120 7e-045
gb|BE356504.1|BE356504 DG1_125_G03.g1_A002 Dark Grown 1 (DG... 120 7e-045
gb|BE356481.1|BE356481 DG1_125_C07.g1_A002 Dark Grown 1 (DG... 120 7e-045
gb|CD224909.1|CD224909 CCC1_37_A05.b1_A007 Callus culture/c... 118 3e-044
gb|BE363177.1|BE363177 DG1_9_H02.g1_A002 Dark Grown 1 (DG1)... 120 3e-044
gb|CL181053.1|CL181053 104_391_10896478_148_31927_238 Sorgh... 117 7e-044
gb|AW678398.1|AW678398 WS1_15_E05.g1_A002 Water-stressed 1 ... 105 2e-040
gb|BG605888.1|BG605888 RHIZ2_82_G10.g1_A003 Rhizome2 (RHIZ2... 100 3e-040
gb|BE918392.1|BE918392 OV1_3_A07.g1_A002 Ovary 1 (OV1) Sorg... 106 6e-040
gb|BG103002.1|BG103002 RHIZ2_35_H06.b1_A003 Rhizome2 (RHIZ2... 120 6e-039
gb|BE356646.1|BE356646 DG1_126_C05.g1_A002 Dark Grown 1 (DG... 119 4e-038
gb|BE355170.1|BE355170 DG1_10_F05.g1_A002 Dark Grown 1 (DG1... 120 9e-038
gb|BE356553.1|BE356553 DG1_126_C05.b1_A002 Dark Grown 1 (DG... 145 1e-035
gb|DN552493.1|DN552493 pSHR-RT-A-H1_C07_C085 pSHR Sorghum h... 88 5e-035
gb|CL177480.1|CL177480 104_384_10893857_148_31915_305 Sorgh... 99 2e-034
gb|AW680192.1|AW680192 WS1_4_C09.g1_A002 Water-stressed 1 (... 85 2e-034
gb|BE357851.1|BE357851 DG1_22_E09.g1_A002 Dark Grown 1 (DG1... 119 3e-034
gb|CN139539.1|CN139539 OX1_22_E01.g1_A002 Oxidatively-stres... 141 1e-032
gb|CW218469.1|CW218469 104_652_11196207_116_37528_062 Sorgh... 97 2e-032
gb|CN146426.1|CN146426 WOUND1_41_D07.b1_A002 Wounded leaves... 97 2e-032
gb|BG605826.1|BG605826 RHIZ2_81_H11.g1_A003 Rhizome2 (RHIZ2... 97 2e-032
gb|CX618502.1|CX618502 GABR1_40_B04.b1_A002 GA- or brassino... 97 2e-032
gb|CW111253.1|CW111253 104_484_11104205_148_34527_023 Sorgh... 97 2e-032
gb|BE356755.1|BE356755 DG1_12_C08.g1_A002 Dark Grown 1 (DG1... 97 2e-032
gb|CW368566.1|CW368566 fsbb001f042j11k0 Sorghum methylation... 97 2e-032
gb|AW285132.1|AW285132 LG1_206_E11.g1_A002 Light Grown 1 (L... 97 2e-032
gb|CD235852.1|CD235852 SS1_24_D08.b1_A012 Salt-stressed see... 97 2e-032
gb|AW282975.1|AW282975 LG1_206_D03.g1_A002 Light Grown 1 (L... 97 2e-032
gb|CD236573.1|CD236573 SS1_35_F07.b1_A012 Salt-stressed see... 97 2e-032
gb|CW275098.1|CW275098 104_748_11404780_148_35385_012 Sorgh... 95 3e-031
gb|CW323273.1|CW323273 104_817_11476543_148_35960_026 Sorgh... 95 5e-031
gb|BG947040.1|BG947040 IP1_2_G11.g1_A002 Immature pannicle ... 119 8e-031
gb|BE357653.1|BE357653 DG1_21_E10.g1_A002 Dark Grown 1 (DG1... 119 8e-031
gb|BE359733.1|BE359733 DG1_56_H08.g2_A002 Dark Grown 1 (DG1... 82 2e-030
gb|CD225604.1|CD225604 CCC1_40_G02.b1_A007 Callus culture/c... 82 3e-030
gb|BE352863.1|BE352863 LG1_267_G09.g1_A002 Light Grown 1 (L... 88 1e-029
gb|BE352864.1|BE352864 LG1_267_G10.g1_A002 Light Grown 1 (L... 88 1e-029
gb|CX621250.1|CX621250 GABR1_57_A12.b1_A002 GA- or brassino... 87 5e-029
gb|CW037357.1|CW037357 104_269_10504294_114_30383 Sorghum m... 95 5e-028
gb|AW676674.1|AW676674 DG1_13_H08.g1_A002 Dark Grown 1 (DG1... 82 6e-028
gb|CL177479.1|CL177479 104_384_10893857_116_31916_305 Sorgh... 99 3e-027
gb|CD227391.1|CD227391 CCC1_51_H09.b1_A007 Callus culture/c... 82 1e-026
gb|BG052635.1|BG052635 RHIZ2_27_D08.g1_A003 Rhizome2 (RHIZ2... 119 1e-026
gb|CN131440.1|CN131440 RHOH1_48_D01.b1_A002 Acid- and alkal... 82 1e-026
gb|AW922582.1|AW922582 DG1_45_E11.g1_A002 Dark Grown 1 (DG1... 119 5e-026
gb|BI211637.1|BI211637 IP1_60_A09.g1_A002 Immature pannicle... 119 5e-026
gb|CD213475.1|CD213475 HS1_41_D06.b1_A012 Heat-shocked seed... 119 5e-026
gb|CW205284.1|CW205284 104_633_11186988_148_36927_038 Sorgh... 100 5e-026
gb|BE362164.1|BE362164 DG1_84_F03.g1_A002 Dark Grown 1 (DG1... 100 5e-026
gb|CW143823.1|CW143823 104_535_11137619_116_34954_036 Sorgh... 100 5e-026
gb|CW143824.1|CW143824 104_535_11137619_148_34958_036 Sorgh... 100 5e-026
gb|CW030005.1|CW030005 104_257_10499999_116_30402 Sorghum m... 97 3e-025
gb|BG355958.2|BG355958 EM1_18_F11.g1_A002 Embryo 1 (EM1) So... 84 4e-024
gb|BG487912.1|BG487912 RHIZ2_60_H06.g1_A003 Rhizome2 (RHIZ2... 82 6e-024
gb|CW360174.1|CW360174 fsbb001f028c08k0 Sorghum methylation... 91 9e-024
gb|CW370182.1|CW370182 fsbb001f044p12f0 Sorghum methylation... 91 1e-023
gb|BE361720.1|BE361720 DG1_81_C01.g1_A002 Dark Grown 1 (DG1... 70 7e-023
gb|BG465900.1|BG465900 RHIZ2_46_A05.g1_A003 Rhizome2 (RHIZ2... 70 7e-023
gb|BG559972.1|BG559972 RHIZ2_75_H09.g1_A003 Rhizome2 (RHIZ2... 70 7e-023
gb|AW286181.1|AW286181 LG1_328_E01.g1_A002 Light Grown 1 (L... 70 7e-023
gb|CW171234.1|CW171234 104_581_11155631_148_36522_082 Sorgh... 84 9e-023
gb|CL154550.1|CL154550 104_339_10781491_114_31371_355 Sorgh... 84 9e-023
gb|CL190998.1|CL190998 104_409_10906473_116_32496_037 Sorgh... 84 9e-023
gb|CL190997.1|CL190997 104_409_10906473_114_32488_037 Sorgh... 84 9e-023
gb|CF771208.1|CF771208 DSBF1_15_F05.g1_A010 Drought-stresse... 70 9e-023
gb|CW458296.1|CW458296 fsbb001f204i05f0 Sorghum methylation... 67 1e-022
gb|AW924499.1|AW924499 WS1_70_C10.b1_A002 Water-stressed 1 ... 69 2e-022
gb|CX609326.1|CX609326 ANR1_12_B05.b1_A002 Anaerobic roots ... 71 2e-022
gb|CX609201.1|CX609201 ANR1_11_F09.b1_A002 Anaerobic roots ... 71 2e-022
gb|CW299073.1|CW299073 104_781_11462920_148_35657_050 Sorgh... 71 2e-022
gb|BE355210.1|BE355210 DG1_10_F11.g1_A002 Dark Grown 1 (DG1... 71 2e-022
gb|CF427951.1|CF427951 PH1_11_F08.g1_A002 Phosphorous-defic... 71 2e-022
gb|CF429943.1|CF429943 PH1_25_F09.b1_A002 Phosphorous-defic... 71 2e-022
gb|CN151725.1|CN151725 WOUND1_77_E10.b1_A002 Wounded leaves... 71 2e-022
gb|CW289115.1|CW289115 104_767_11412305_148_35537_065 Sorgh... 71 2e-022
gb|BE359944.1|BE359944 DG1_58_G02.g2_A002 Dark Grown 1 (DG1... 71 2e-022
gb|CD428029.1|CD428029 ETH1_32_H05.b1_A002 Ethylene-treated... 71 4e-022
gb|CL190655.1|CL190655 104_409_10906227_116_32496_016 Sorgh... 91 6e-022
gb|CW436489.1|CW436489 fsbb001f153b24f0 Sorghum methylation... 91 6e-022
gb|CW497689.1|CW497689 fsbb001f290j02k0 Sorghum methylation... 91 6e-022
gb|BF422100.1|BF422100 FM1_12_H05.g1_A003 Floral-Induced Me... 85 1e-021
gb|CX616461.1|CX616461 GABR1_28_C04.b1_A002 GA- or brassino... 65 2e-021
gb|CN143916.1|CN143916 WOUND1_19_D07.b1_A002 Wounded leaves... 71 2e-021
gb|CN131128.1|CN131128 RHOH1_46_C04.b1_A002 Acid- and alkal... 68 2e-021
gb|CD236019.1|CD236019 SS1_25_C10.b1_A012 Salt-stressed see... 71 2e-021
gb|BG102496.1|BG102496 RHIZ2_33_G06.g1_A003 Rhizome2 (RHIZ2... 66 2e-021
gb|BZ779779.1|BZ779779 ii34e07.g1 WGS-SbicolorF (DH5a methy... 65 4e-021
gb|CW063398.1|CW063398 104_309_10521981_114_30134 Sorghum m... 65 4e-021
gb|CW301137.1|CW301137 104_784_11464043_116_36253_034 Sorgh... 65 4e-021
gb|CN139961.1|CN139961 OX1_33_E06.b1_A002 Oxidatively-stres... 65 4e-021
gb|CW169285.1|CW169285 104_579_11154593_148_36500_075 Sorgh... 88 4e-021
gb|AW922831.1|AW922831 DG1_46_D12.g1_A002 Dark Grown 1 (DG1... 65 4e-021
gb|BG557261.1|BG557261 EM1_44_F08.g1_A002 Embryo 1 (EM1) So... 65 4e-021
>gb|CL157536.1|CL157536 104_345_10783651_114_31477_211 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783651, DNA
sequence
Length = 783
Score = 145 bits (311), Expect(3) = 7e-066
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +2 / -2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDFRNLESKGVAFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGF+ADAC
Sbjct: 731 IRDFRNLESKGVAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFRADAC 552
Score = 130 bits (279), Expect(4) = 4e-056
Identities = 56/60 (93%), Positives = 57/60 (95%)
Frame = -3 / +1
Query: 180 QASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
QASALNPR EAEKGAWDQSVLTRPPCVAQSSAF+RLE*SRIGW LGNATPLLSR RKSLI
Sbjct: 553 QASALNPRYEAEKGAWDQSVLTRPPCVAQSSAFHRLE*SRIGWFLGNATPLLSRFRKSLI 732
Score = 119 bits (255), Expect(3) = 7e-066
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / -2
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 458 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 315
Score = 105 bits (224), Expect(4) = 4e-056
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 316 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 456
Score = 66.1 bits (138), Expect(3) = 5e-028
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3 / -1
Query: 327 QVHDLQLLHRPQALPAGPPRRVLHAV 404
QVHDLQLLHRPQALPAGPPRRVLHAV
Sbjct: 399 QVHDLQLLHRPQALPAGPPRRVLHAV 322
Score = 53.8 bits (111), Expect(3) = 5e-028
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -3
Query: 3 SGTSATWRARGWRSPRASRCG 65
SGTS TWRARGWRSPR SRCG
Sbjct: 730 SGTSGTWRARGWRSPRTSRCG 668
Score = 47.3 bits (97), Expect(3) = 5e-028
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1 / -1
Query: 55 ADAALLQPVERGRLGDAGRARQD 123
ADAALLQPVER RLGD GR RQD
Sbjct: 678 ADAALLQPVERRRLGDTGRPRQD 610
Score = 26.3 bits (51), Expect(3) = 7e-066
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / -2
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 548 AVAGGKTRCG 519
Score = 22.1 bits (42), Expect(4) = 4e-056
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2 / +2
Query: 583 TSYCVTNRQVL 551
T YC+T RQ+L
Sbjct: 125 TPYCITIRQIL 157
Score = 22.1 bits (42), Expect(4) = 4e-056
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = -2 / +2
Query: 685 QTTYTVHVPTGWARTRRLQEHRQQKNF 605
+T +HV TGW R NF
Sbjct: 32 RTVDYIHVRTGWRRREDSGLQNSHNNF 112
>gb|CN139453.1|CN139453 OX1_22_E01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_22_E01_A002 3', mRNA sequence
Length = 731
Score = 145 bits (311), Expect(3) = 7e-066
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDFRNLESKGVAFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGF+ADAC
Sbjct: 6 IRDFRNLESKGVAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFRADAC 185
Score = 130 bits (279), Expect(4) = 3e-056
Identities = 56/60 (93%), Positives = 57/60 (95%)
Frame = -3 / -2
Query: 180 QASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
QASALNPR EAEKGAWDQSVLTRPPCVAQSSAF+RLE*SRIGW LGNATPLLSR RKSLI
Sbjct: 184 QASALNPRYEAEKGAWDQSVLTRPPCVAQSSAFHRLE*SRIGWFLGNATPLLSRFRKSLI 5
Score = 119 bits (255), Expect(3) = 7e-066
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / +3
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 279 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 422
Score = 105 bits (224), Expect(4) = 3e-056
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / -2
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 421 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 281
Score = 66.1 bits (138), Expect(3) = 1e-028
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3 / +2
Query: 327 QVHDLQLLHRPQALPAGPPRRVLHAV 404
QVHDLQLLHRPQALPAGPPRRVLHAV
Sbjct: 338 QVHDLQLLHRPQALPAGPPRRVLHAV 415
Score = 55.6 bits (115), Expect(3) = 1e-028
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +3 / +1
Query: 3 SGTSATWRARGWRSPRASRCGS 68
SGTS TWRARGWRSPR SRCGS
Sbjct: 7 SGTSGTWRARGWRSPRTSRCGS 72
Score = 47.3 bits (97), Expect(3) = 1e-028
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1 / +2
Query: 55 ADAALLQPVERGRLGDAGRARQD 123
ADAALLQPVER RLGD GR RQD
Sbjct: 59 ADAALLQPVERRRLGDTGRPRQD 127
Score = 26.3 bits (51), Expect(3) = 7e-066
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 189 AVAGGKTRCG 218
Score = 22.1 bits (42), Expect(4) = 3e-056
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2 / -3
Query: 583 TSYCVTNRQVL 551
T YC+T RQ+L
Sbjct: 612 TPYCITIRQIL 580
Score = 22.1 bits (42), Expect(4) = 3e-056
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = -2 / -3
Query: 685 QTTYTVHVPTGWARTRRLQEHRQQKNF 605
+T +HV TGW R NF
Sbjct: 705 RTVDYIHVRTGWRRREDSGLQNSHNNF 625
>gb|AW672235.1|AW672235 LG1_358_E01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 549
Score = 133 bits (285), Expect(3) = 3e-062
Identities = 52/55 (94%), Positives = 54/55 (98%)
Frame = +2 / +2
Query: 17 NLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
NLESKGVAFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGF+ADAC
Sbjct: 11 NLESKGVAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFRADAC 175
Score = 120 bits (257), Expect(2) = 6e-052
Identities = 51/54 (94%), Positives = 52/54 (96%)
Frame = -3 / -1
Query: 180 QASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSR 19
QASALNPR EAEKGAWDQSVLTRPPCVAQSSAF+RLE*SRIGW LGNATPLLSR
Sbjct: 174 QASALNPRYEAEKGAWDQSVLTRPPCVAQSSAFHRLE*SRIGWFLGNATPLLSR 13
Score = 119 bits (255), Expect(3) = 3e-062
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / +2
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 269 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 412
Score = 105 bits (224), Expect(2) = 6e-052
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / -1
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 411 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 271
Score = 66.1 bits (138), Expect(3) = 7e-027
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3 / +1
Query: 327 QVHDLQLLHRPQALPAGPPRRVLHAV 404
QVHDLQLLHRPQALPAGPPRRVLHAV
Sbjct: 328 QVHDLQLLHRPQALPAGPPRRVLHAV 405
Score = 48.7 bits (100), Expect(3) = 7e-027
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = +3 / +3
Query: 9 TSATWRARGWRSPRASRCGS 68
T TWRARGWRSPR SRCGS
Sbjct: 3 TRGTWRARGWRSPRTSRCGS 62
Score = 47.3 bits (97), Expect(3) = 7e-027
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1 / +1
Query: 55 ADAALLQPVERGRLGDAGRARQD 123
ADAALLQPVER RLGD GR RQD
Sbjct: 49 ADAALLQPVERRRLGDTGRPRQD 117
Score = 26.3 bits (51), Expect(3) = 3e-062
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 179 AVAGGKTRCG 208
>gb|CW118138.1|CW118138 104_494_11108040_148_34621_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108040, DNA
sequence
Length = 442
Score = 119 bits (255), Expect(3) = 1e-045
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / -3
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 260 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 117
Score = 105 bits (224), Expect(2) = 2e-036
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / +1
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 118 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 258
Score = 77.6 bits (163), Expect(3) = 1e-045
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +2 / -3
Query: 95 WATQGGRVKTDWSHAPFSASYRGFKADAC 181
WATQGGRVKTDWSHAPFSASYRGF+ADAC
Sbjct: 440 WATQGGRVKTDWSHAPFSASYRGFRADAC 354
Score = 68.9 bits (144), Expect(2) = 2e-036
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = -3 / +1
Query: 180 QASALNPR*EAEKGAWDQSVLTRPPCVAQ 94
QASALNPR EAEKGAWDQSVLTRPPCVAQ
Sbjct: 355 QASALNPRYEAEKGAWDQSVLTRPPCVAQ 441
Score = 26.3 bits (51), Expect(3) = 1e-045
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 350 AVAGGKTRCG 321
>gb|CN131344.1|CN131344 RHOH1_47_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_47_H10_A002 3', mRNA sequence
Length = 735
Score = 120 bits (257), Expect(2) = 7e-045
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 68 IRDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 247
Score = 81.7 bits (172), Expect(2) = 7e-045
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 332 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 466
Score = 79.4 bits (167), Expect(2) = 3e-023
Identities = 39/59 (66%), Positives = 41/59 (69%)
Frame = -3 / -1
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP S KS I
Sbjct: 243 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTPRASWFLKSRI 67
Score = 50.6 bits (104), Expect(2) = 3e-023
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -1
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 453 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 331
>gb|BE355488.1|BE355488 DG1_114_G02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 120 bits (257), Expect(2) = 7e-045
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 15 IRDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 194
Score = 81.7 bits (172), Expect(2) = 7e-045
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 279 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 413
Score = 79.4 bits (167), Expect(2) = 3e-023
Identities = 39/59 (66%), Positives = 41/59 (69%)
Frame = -3 / -3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP S KS I
Sbjct: 190 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTPRASWFLKSRI 14
Score = 50.6 bits (104), Expect(2) = 3e-023
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -3
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 400 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 278
>gb|BE361712.1|BE361712 DG1_81_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 638
Score = 120 bits (257), Expect(2) = 7e-045
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 15 IRDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 194
Score = 81.7 bits (172), Expect(2) = 7e-045
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 279 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 413
Score = 79.4 bits (167), Expect(2) = 3e-023
Identities = 39/59 (66%), Positives = 41/59 (69%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP S KS I
Sbjct: 190 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTPRASWFLKSRI 14
Score = 50.6 bits (104), Expect(2) = 3e-023
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -2
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 400 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 278
>gb|BE356504.1|BE356504 DG1_125_G03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 120 bits (257), Expect(2) = 7e-045
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 5 IRDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 184
Score = 81.7 bits (172), Expect(2) = 7e-045
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 269 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 403
Score = 79.4 bits (167), Expect(2) = 3e-023
Identities = 39/59 (66%), Positives = 41/59 (69%)
Frame = -3 / -3
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP S KS I
Sbjct: 180 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTPRASWFLKSRI 4
Score = 50.6 bits (104), Expect(2) = 3e-023
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -3
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 390 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 268
>gb|BE356481.1|BE356481 DG1_125_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 120 bits (257), Expect(2) = 7e-045
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 7 IRDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 186
Score = 81.7 bits (172), Expect(2) = 7e-045
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 271 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 405
Score = 79.4 bits (167), Expect(2) = 3e-023
Identities = 39/59 (66%), Positives = 41/59 (69%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP S KS I
Sbjct: 182 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTPRASWFLKSRI 6
Score = 50.6 bits (104), Expect(2) = 3e-023
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -2
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 392 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 270
>gb|CD224909.1|CD224909 CCC1_37_A05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_A05_A007 3', mRNA sequence
Length = 667
Score = 118 bits (253), Expect(2) = 3e-044
Identities = 44/59 (74%), Positives = 52/59 (88%)
Frame = +2 / +2
Query: 5 RDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
RDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 2 RDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 178
Score = 81.7 bits (172), Expect(2) = 3e-044
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 263 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 397
Score = 78.5 bits (165), Expect(2) = 5e-023
Identities = 38/57 (66%), Positives = 40/57 (70%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKS 7
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP S KS
Sbjct: 174 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTPRASWFLKS 4
Score = 50.6 bits (104), Expect(2) = 5e-023
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -2
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 384 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 262
>gb|BE363177.1|BE363177 DG1_9_H02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 397
Score = 120 bits (257), Expect(2) = 3e-044
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 11 IRDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 190
Score = 79.9 bits (168), Expect(2) = 3e-044
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC
Sbjct: 275 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAEC 397
Score = 79.4 bits (167), Expect(2) = 3e-023
Identities = 39/59 (66%), Positives = 41/59 (69%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP S KS I
Sbjct: 186 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTPRASWFLKSRI 10
Score = 50.6 bits (104), Expect(2) = 3e-023
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -2
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 396 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 274
>gb|CL181053.1|CL181053 104_391_10896478_148_31927_238 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896478, DNA
sequence
Length = 580
Score = 117 bits (250), Expect(2) = 7e-044
Identities = 44/60 (73%), Positives = 52/60 (86%)
Frame = +2 / -2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV P++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 570 IRDFKNHEARGVGVPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 391
Score = 81.7 bits (172), Expect(2) = 7e-044
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / -2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 306 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 172
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 38/59 (64%), Positives = 40/59 (67%)
Frame = -3 / +2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + G TP S KS I
Sbjct: 395 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGTPTPRASWFLKSRI 571
Score = 50.6 bits (104), Expect(2) = 2e-022
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / +2
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 185 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 307
>gb|AW678398.1|AW678398 WS1_15_E05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 105 bits (225), Expect(2) = 2e-040
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2 / +2
Query: 29 KGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
+GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 2 RGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 154
Score = 81.7 bits (172), Expect(2) = 2e-040
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 239 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 373
Score = 76.2 bits (160), Expect(2) = 2e-022
Identities = 35/49 (71%), Positives = 37/49 (75%)
Frame = -3 / -1
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATP 31
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP
Sbjct: 150 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTP 4
Score = 50.6 bits (104), Expect(2) = 2e-022
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -1
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 360 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 238
>gb|BG605888.1|BG605888 RHIZ2_82_G10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 100 bits (213), Expect(3) = 3e-040
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +2 / +1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 46 FPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 186
Score = 81.7 bits (172), Expect(3) = 3e-040
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 271 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 405
Score = 71.2 bits (149), Expect(2) = 7e-021
Identities = 33/46 (71%), Positives = 35/46 (76%)
Frame = -3 / -1
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGN 40
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN
Sbjct: 182 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGN 45
Score = 50.6 bits (104), Expect(2) = 7e-021
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -1
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ*L*IM CTQR+R + S W +Q
Sbjct: 392 HSAGTPCGNRLASVQ*L*IMNFLCTQRMRR*LMSLSCWFHQ 270
Score = 23.1 bits (44), Expect(3) = 3e-040
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGV 37
IRDF+N E++GV
Sbjct: 8 IRDFKNHEARGV 43
>gb|BE918392.1|BE918392 OV1_3_A07.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 566
Score = 106 bits (226), Expect(2) = 6e-040
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +2 / +3
Query: 26 SKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 3 ARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 158
Score = 79.4 bits (167), Expect(2) = 6e-040
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYN+CTD KR+ QG+PAEC ++*
Sbjct: 243 WWNQQLSDMSYRRMRWVQRKFMIYNHCTDAKRFPQGVPAECKLR* 377
Score = 76.2 bits (160), Expect(2) = 1e-021
Identities = 35/49 (71%), Positives = 37/49 (75%)
Frame = -3 / -2
Query: 177 ASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATP 31
ASALNPR +A GA QS LTRPPCVAQSSAF RL SRIG + GN TP
Sbjct: 154 ASALNPRNDATNGACVQSALTRPPCVAQSSAFQRLAYSRIGCVRGNPTP 8
Score = 48.3 bits (99), Expect(2) = 1e-021
Identities = 23/41 (56%), Positives = 26/41 (63%)
Frame = -1 / -2
Query: 392 HSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
HSAG PC RL SVQ L*IM CTQR+R + S W +Q
Sbjct: 364 HSAGTPCGNRLASVQWL*IMNFLCTQRMRR*LMSLSCWFHQ 242
>gb|BG103002.1|BG103002 RHIZ2_35_H06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 561
Score = 120 bits (257), Expect(2) = 6e-039
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 202 IRDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 381
Score = 62.0 bits (129), Expect(2) = 6e-039
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKR 366
W+NQ+L +RMRWVQRK+MIYNYCTD KR
Sbjct: 466 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKR 561
>gb|BE356646.1|BE356646 DG1_126_C05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 119 bits (255), Expect(3) = 4e-038
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / +3
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 153 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 296
Score = 105 bits (224), Expect(3) = 1e-029
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / -3
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 295 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 155
Score = 51.9 bits (107), Expect(3) = 4e-038
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +2 / +3
Query: 125 DWSHAPFSASYRGFKADAC 181
DWSHAPFSASYRGF+ADAC
Sbjct: 3 DWSHAPFSASYRGFRADAC 59
Score = 44.1 bits (90), Expect(3) = 1e-029
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = -3 / -3
Query: 180 QASALNPR*EAEKGAWDQS 124
QASALNPR EAEKGAWDQS
Sbjct: 58 QASALNPRYEAEKGAWDQS 2
Score = 26.3 bits (51), Expect(3) = 4e-038
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 63 AVAGGKTRCG 92
Score = 22.1 bits (42), Expect(3) = 1e-029
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2 / -1
Query: 583 TSYCVTNRQVL 551
T YC+T RQ+L
Sbjct: 486 TPYCITIRQIL 454
>gb|BE355170.1|BE355170 DG1_10_F05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 383
Score = 120 bits (257), Expect(2) = 9e-038
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDF+N E++GV FP++QPMRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 13 IRDFKNHEARGVGFPRTQPMRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 192
Score = 57.9 bits (120), Expect(2) = 9e-038
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTD 357
W+NQ+L +RMRWVQRK+MIYNYCTD
Sbjct: 277 WWNQQLSDMSYRRMRWVQRKFMIYNYCTD 363
>gb|BE356553.1|BE356553 DG1_126_C05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 454
Score = 145 bits (311), Expect(2) = 1e-035
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IRDFRNLESKGVAFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGF+ADAC
Sbjct: 212 IRDFRNLESKGVAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFRADAC 391
Score = 130 bits (279), Expect = 2e-029
Identities = 56/60 (93%), Positives = 57/60 (95%)
Frame = -3 / -2
Query: 180 QASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
QASALNPR EAEKGAWDQSVLTRPPCVAQSSAF+RLE*SRIGW LGNATPLLSR RKSLI
Sbjct: 390 QASALNPRYEAEKGAWDQSVLTRPPCVAQSSAFHRLE*SRIGWFLGNATPLLSRFRKSLI 211
Score = 26.3 bits (51), Expect(2) = 1e-035
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 395 AVAGGKTRCG 424
>gb|DN552493.1|DN552493 pSHR-RT-A-H1_C07_C085 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 655
Score = 87.7 bits (185), Expect(2) = 5e-035
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = +2 / -3
Query: 59 MRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
MRLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 653 MRLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 531
Score = 81.7 bits (172), Expect(2) = 5e-035
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / -3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 446 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 312
>gb|CL177480.1|CL177480 104_384_10893857_148_31915_305 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893857, DNA
sequence
Length = 716
Score = 98.7 bits (209), Expect(2) = 2e-034
Identities = 39/59 (66%), Positives = 45/59 (76%)
Frame = +2 / -1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADA 178
IR+F+N +GV +P SQ MRLY SL +A+DWATQGGRVKTDWS APF A YR F A A
Sbjct: 479 IREFKNHADRGVPYPSSQRMRLYGSLWDAEDWATQGGRVKTDWSQAPFVAQYRSFTATA 303
Score = 68.4 bits (143), Expect(2) = 2e-034
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +1 / -1
Query: 274 YNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSM 399
Y Q++D QQ M+W + YM+Y+YC D KR+ QG+P ECSM
Sbjct: 272 YGQQMDAAAQQSMKWARDNYMVYDYCADTKRFPQGVPPECSM 147
>gb|AW680192.1|AW680192 WS1_4_C09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 613
Score = 85.4 bits (180), Expect(2) = 2e-034
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +2 / +3
Query: 62 RLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
RLY+SL NADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 3 RLYASLWNADDWATQGGRVKADWTQAPFVASFRGFSADAC 122
Score = 81.7 bits (172), Expect(2) = 2e-034
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 207 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 341
>gb|BE357851.1|BE357851 DG1_22_E09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 569
Score = 119 bits (255), Expect(3) = 3e-034
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / +1
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 139 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 282
Score = 105 bits (224), Expect(4) = 4e-027
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / -1
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 281 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 141
Score = 38.6 bits (78), Expect(3) = 3e-034
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2 / +1
Query: 137 APFSASYRGFKADAC 181
APFSASYRGF+ADAC
Sbjct: 1 APFSASYRGFRADAC 45
Score = 30.4 bits (60), Expect(4) = 4e-027
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3 / -1
Query: 180 QASALNPR*EAEKG 139
QASALNPR EAEKG
Sbjct: 44 QASALNPRYEAEKG 3
Score = 26.3 bits (51), Expect(3) = 3e-034
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 49 AVAGGKTRCG 78
Score = 22.1 bits (42), Expect(4) = 4e-027
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2 / -2
Query: 583 TSYCVTNRQVL 551
T YC+T RQ+L
Sbjct: 472 TPYCITIRQIL 440
Score = 22.1 bits (42), Expect(4) = 4e-027
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = -2 / -2
Query: 685 QTTYTVHVPTGWARTRRLQEHRQQKNF 605
+T +HV TGW R NF
Sbjct: 565 RTVDYIHVRTGWRRREDSGLQNSHNNF 485
>gb|CN139539.1|CN139539 OX1_22_E01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_22_E01_A002 5', mRNA sequence
Length = 705
Score = 141 bits (302), Expect = 1e-032
Identities = 56/59 (94%), Positives = 58/59 (98%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADA 178
IRDFRNLESKGVAFPK+QPMRLYSSL NADDWATQGGRVKTDWSHAPFSASYRGF+ADA
Sbjct: 527 IRDFRNLESKGVAFPKNQPMRLYSSLWNADDWATQGGRVKTDWSHAPFSASYRGFRADA 703
Score = 130 bits (279), Expect = 2e-029
Identities = 56/60 (93%), Positives = 57/60 (95%)
Frame = -3 / -1
Query: 180 QASALNPR*EAEKGAWDQSVLTRPPCVAQSSAFNRLE*SRIGWLLGNATPLLSRLRKSLI 1
QASALNPR EAEKGAWDQSVLTRPPCVAQSSAF+RLE*SRIGW LGNATPLLSR RKSLI
Sbjct: 705 QASALNPRYEAEKGAWDQSVLTRPPCVAQSSAFHRLE*SRIGWFLGNATPLLSRFRKSLI 526
>gb|CW218469.1|CW218469 104_652_11196207_116_37528_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196207, DNA
sequence
Length = 718
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 43 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 222
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 265 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 390
>gb|CN146426.1|CN146426 WOUND1_41_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_41_D07_A002 3', mRNA sequence
Length = 707
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 145 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 324
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 367 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 492
>gb|BG605826.1|BG605826 RHIZ2_81_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 700
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 175 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 354
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 397 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 522
>gb|CX618502.1|CX618502 GABR1_40_B04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_40_B04_A002 3', mRNA sequence
Length = 687
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 147 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 326
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 369 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 494
>gb|CW111253.1|CW111253 104_484_11104205_148_34527_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104205, DNA
sequence
Length = 660
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / -2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 353 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 174
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / -2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 131 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 6
>gb|BE356755.1|BE356755 DG1_12_C08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 98 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 277
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 320 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 445
>gb|CW368566.1|CW368566 fsbb001f042j11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f042j11, DNA
sequence
Length = 594
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / -2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 449 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 270
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / -3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 226 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 101
>gb|AW285132.1|AW285132 LG1_206_E11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 27 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 206
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 249 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 374
>gb|CD235852.1|CD235852 SS1_24_D08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_24_D08_A012 3', mRNA sequence
Length = 567
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 6 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 185
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 228 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 353
>gb|AW282975.1|AW282975 LG1_206_D03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 13 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 192
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 235 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 360
>gb|CD236573.1|CD236573 SS1_35_F07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_35_F07_A012 3', mRNA sequence
Length = 551
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/60 (61%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR+FR V FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 6 IREFRRRNDGAVPFPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 185
Score = 63.4 bits (132), Expect(2) = 2e-032
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 228 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 353
>gb|CW275098.1|CW275098 104_748_11404780_148_35385_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404780, DNA
sequence
Length = 687
Score = 95.5 bits (202), Expect(2) = 3e-031
Identities = 36/60 (60%), Positives = 45/60 (75%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR RN FP QPMRLY+S+ +AD+WATQGGR+KTDWSHAPF+A +R + A+AC
Sbjct: 282 IRRMRNQMRDDTPFPLYQPMRLYASIWDADEWATQGGRIKTDWSHAPFTAFFRNYTANAC 461
Score = 61.1 bits (127), Expect(2) = 3e-031
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RPV 414
W+NQELD QQ++ V K IY+YCTD +R+ G P EC Q*+ +
Sbjct: 513 WFNQELDEEGQQKLNDVNAKNKIYDYCTDSRRFPNGYPPECGSQ*KVI 656
>gb|CW323273.1|CW323273 104_817_11476543_148_35960_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476543, DNA
sequence
Length = 734
Score = 95.5 bits (202), Expect(2) = 5e-031
Identities = 36/60 (60%), Positives = 45/60 (75%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR RN FP QPMRLY+S+ +AD+WATQGGR+KTDWSHAPF+A +R + A+AC
Sbjct: 278 IRRMRNQMRDDTPFPLYQPMRLYASIWDADEWATQGGRIKTDWSHAPFTAFFRNYTANAC 457
Score = 60.6 bits (126), Expect(2) = 5e-031
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*R 408
W+NQELD QQ++ V K IY+YCTD +R+ G P EC Q*+
Sbjct: 509 WFNQELDEEGQQKLNDVNAKNKIYDYCTDSRRFPNGYPPECGSQ*K 646
>gb|BG947040.1|BG947040 IP1_2_G11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 588
Score = 119 bits (255), Expect(3) = 8e-031
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / +1
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 124 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 267
Score = 105 bits (224), Expect(3) = 3e-023
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / -2
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 266 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 126
Score = 27.2 bits (53), Expect(3) = 8e-031
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / +1
Query: 152 SYRGFKADAC 181
SYRGF+ADAC
Sbjct: 1 SYRGFRADAC 30
Score = 26.3 bits (51), Expect(3) = 8e-031
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 34 AVAGGKTRCG 63
Score = 22.1 bits (42), Expect(3) = 3e-023
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2 / -3
Query: 583 TSYCVTNRQVL 551
T YC+T RQ+L
Sbjct: 457 TPYCITIRQIL 425
Score = 22.1 bits (42), Expect(3) = 3e-023
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = -2 / -3
Query: 685 QTTYTVHVPTGWARTRRLQEHRQQKNF 605
+T +HV TGW R NF
Sbjct: 550 RTVDYIHVRTGWRRREDSGLQNSHNNF 470
>gb|BE357653.1|BE357653 DG1_21_E10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 119 bits (255), Expect(3) = 8e-031
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / +2
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 125 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 268
Score = 105 bits (224), Expect(3) = 3e-023
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / -3
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 267 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 127
Score = 27.2 bits (53), Expect(3) = 8e-031
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / +2
Query: 152 SYRGFKADAC 181
SYRGF+ADAC
Sbjct: 2 SYRGFRADAC 31
Score = 26.3 bits (51), Expect(3) = 8e-031
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 184 AVAGGRTRCG 213
AVAGG+TRCG
Sbjct: 35 AVAGGKTRCG 64
Score = 22.1 bits (42), Expect(3) = 3e-023
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2 / -1
Query: 583 TSYCVTNRQVL 551
T YC+T RQ+L
Sbjct: 458 TPYCITIRQIL 426
Score = 22.1 bits (42), Expect(3) = 3e-023
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = -2 / -1
Query: 685 QTTYTVHVPTGWARTRRLQEHRQQKNF 605
+T +HV TGW R NF
Sbjct: 551 RTVDYIHVRTGWRRREDSGLQNSHNNF 471
>gb|BE359733.1|BE359733 DG1_56_H08.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 427
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 181 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 315
Score = 72.1 bits (151), Expect(2) = 2e-030
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2 / +1
Query: 86 ADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
ADDWATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 1 ADDWATQGGRVKADWTQAPFVASFRGFSADAC 96
>gb|CD225604.1|CD225604 CCC1_40_G02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_40_G02_A007 3', mRNA sequence
Length = 589
Score = 81.7 bits (172), Expect(2) = 3e-030
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 185 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 319
Score = 71.6 bits (150), Expect(2) = 3e-030
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2 / +2
Query: 83 NADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
NAD WATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 2 NADXWATQGGRVKADWTQAPFVASFRGFSADAC 100
>gb|BE352863.1|BE352863 LG1_267_G09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 479
Score = 87.7 bits (185), Expect(2) = 1e-029
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +2 / -1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 449 FPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 309
Score = 63.4 bits (132), Expect(2) = 1e-029
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / -1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 266 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 141
>gb|BE352864.1|BE352864 LG1_267_G10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 476
Score = 87.7 bits (185), Expect(2) = 1e-029
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +2 / -2
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
FP SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 451 FPTSQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 311
Score = 63.4 bits (132), Expect(2) = 1e-029
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / -2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 268 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 143
>gb|CX621250.1|CX621250 GABR1_57_A12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_A12_A002 3', mRNA sequence
Length = 507
Score = 86.8 bits (183), Expect(2) = 5e-029
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = +2 / +1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
FP SQPMR Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 1 FPTSQPMRAYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 141
Score = 62.5 bits (130), Expect(2) = 5e-029
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = +1 / +1
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q + R Q YMIYNYCTD R+ QG P ECS
Sbjct: 184 WMSQELDSAAQGQFRRAQASYMIYNYCTDKYRFPQGPPPECS 309
>gb|CW037357.1|CW037357 104_269_10504294_114_30383 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504294, DNA
sequence
Length = 792
Score = 94.5 bits (200), Expect(2) = 5e-028
Identities = 36/60 (60%), Positives = 44/60 (73%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR RN FP QPMRLY+S+ +AD+WATQGGR+KTDWSHAPF+A +R + A AC
Sbjct: 443 IRRMRNQMRDDTPFPLYQPMRLYASIWDADEWATQGGRIKTDWSHAPFTAFFRNYTAXAC 622
Score = 51.5 bits (106), Expect(2) = 5e-028
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
W+NQELD QQ++ V K IY+YCTD +R+ G P
Sbjct: 674 WFNQELDEEGQQKLNDVNAKNKIYDYCTDSRRFPNGYP 787
>gb|AW676674.1|AW676674 DG1_13_H08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 82.2 bits (173), Expect(2) = 6e-028
Identities = 30/44 (68%), Positives = 38/44 (86%)
Frame = +2 / +3
Query: 50 SQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
SQPMR+Y+S+ +A++WATQGGRVKTDWS APF ASY+G+ A C
Sbjct: 3 SQPMRVYASVWDAEEWATQGGRVKTDWSKAPFVASYQGYAAAGC 134
Score = 63.4 bits (132), Expect(2) = 6e-028
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECS 396
W +QELD Q ++R Q YMIYNYCTD R+ QG P ECS
Sbjct: 177 WMSQELDSAAQGQLRRAQASYMIYNYCTDKYRFPQGPPPECS 302
>gb|CL177479.1|CL177479 104_384_10893857_116_31916_305 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893857, DNA
sequence
Length = 703
Score = 98.7 bits (209), Expect(2) = 3e-027
Identities = 39/59 (66%), Positives = 45/59 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADA 178
IR+F+N +GV +P SQ MRLY SL +A+DWATQGGRVKTDWS APF A YR F A A
Sbjct: 408 IREFKNHADRGVPYPSSQRMRLYGSLWDAEDWATQGGRVKTDWSQAPFVAQYRSFTATA 584
Score = 44.6 bits (91), Expect(2) = 3e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +3
Query: 274 YNQELDLTLQQRMRWVQRKYMIYNYCTD 357
Y Q++D QQ M+W + YM+Y+YC D
Sbjct: 615 YGQQMDAAAQQSMKWARDNYMVYDYCAD 698
>gb|CD227391.1|CD227391 CCC1_51_H09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_51_H09_A007 3', mRNA sequence
Length = 571
Score = 81.7 bits (172), Expect(2) = 1e-026
Identities = 29/45 (64%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ* 405
W+NQ+L +RMRWVQRK+MIYNYCTD KR+ QG+PAEC ++*
Sbjct: 171 WWNQQLSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGVPAECKLR* 305
Score = 59.7 bits (124), Expect(2) = 1e-026
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +2 / +3
Query: 98 ATQGGRVKTDWSHAPFSASYRGFKADAC 181
ATQGGRVK DW+ APF AS+RGF ADAC
Sbjct: 3 ATQGGRVKADWTQAPFVASFRGFSADAC 86
>gb|BG052635.1|BG052635 RHIZ2_27_D08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 491
Score = 119 bits (255), Expect(2) = 1e-026
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1 / +3
Query: 268 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RP 411
DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRY QGLPAECSMQ* P
Sbjct: 57 DWYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYPQGLPAECSMQ**P 200
Score = 105 bits (224), Expect(2) = 2e-022
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / -2
Query: 410 GRYCMEHSAGRPCW*RLGSVQ*L*IMYLRCTQRIRCCRVRSSSWLYQ 270
G YCMEHSAGRPC *RLGSVQ*L*IMYLRCT RIRCC VRSSSWLYQ
Sbjct: 199 GYYCMEHSAGRPCG*RLGSVQ*L*IMYLRCTHRIRCCSVRSSSWLYQ 59
Score = 23.5 bits (45), Expect(2) = 2e-022
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2 / -3
Query: 589 ARTSYCVTNRQVL 551
A T YC+T RQ+L
Sbjct: 396 AATPYCITIRQIL 358
Score = 23.1 bits (44), Expect(2) = 1e-026
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2 / +1
Query: 551 KDLTICNAVAGAC 589
KDL CNAV +C
Sbjct: 358 KDLANCNAVRSSC 396
>gb|CN131440.1|CN131440 RHOH1_48_D01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_48_D01_A002 3', mRNA sequence
Length = 592
Score = 82.2 bits (173), Expect(2) = 1e-026
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = +2 / +3
Query: 5 RDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
R +N + G +P PMR+Y+++ NADD ATQGGRVKTDW+ APF+A +R ++A +C
Sbjct: 129 RQIKNTQIYGAPYPYYYPMRVYATIWNADDRATQGGRVKTDWAQAPFTAYFRNYRAISC 305
Score = 58.8 bits (122), Expect(2) = 1e-026
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ*RPVI 417
W++Q+LD++ +Q++ V+ IY+YC D KRY+ G P EC + * V+
Sbjct: 348 WFDQQLDVSRKQQLAQVESSNKIYDYCNDSKRYKNGAPKECGVN*LEVV 494
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 715,194,264
Number of Sequences: 832831
Number of extensions: 9958371
Number of successful extensions: 104169
Number of sequences better than 1.0e-020: 104
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 25188500584
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)