TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.9
(1195 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum b... 359 4e-098
gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorgh... 244 1e-085
gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation... 291 3e-081
gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum met... 209 5e-080
gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum b... 183 3e-077
gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum m... 255 8e-067
gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation... 237 2e-061
gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorgh... 232 6e-061
gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum b... 184 5e-058
gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sor... 206 1e-054
gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum b... 201 1e-050
gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum b... 168 2e-050
gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sor... 178 3e-046
gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Me... 186 7e-046
gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Mer... 182 9e-045
gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Me... 182 9e-045
gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkal... 182 9e-045
gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots ... 181 2e-044
gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation... 171 2e-044
gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum b... 166 1e-042
gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) So... 175 1e-042
gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots S... 165 1e-039
gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) So... 108 1e-031
gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum b... 136 6e-031
gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorgh... 132 1e-029
gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation... 132 1e-029
gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation... 132 1e-029
gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum b... 132 1e-029
gb|CW297869.1|CW297869 104_780_11462273_116_35646_075 Sorgh... 62 6e-029
gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sor... 129 7e-029
gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bi... 128 2e-028
gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation... 105 5e-028
gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum b... 122 1e-026
gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation... 75 2e-026
gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Me... 120 5e-026
gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2... 120 5e-026
gb|CW343076.1|CW343076 104_845_11487223_116_36181_028 Sorgh... 61 6e-026
gb|CW358545.1|CW358545 fsbb001f025l20k0 Sorghum methylation... 118 1e-025
gb|CX607178.1|CX607178 ANR1_7_D05.b1_A002 Anaerobic roots S... 116 9e-025
gb|CN143330.1|CN143330 WOUND1_15_C09.g1_A002 Wounded leaves... 61 2e-023
gb|CW298477.1|CW298477 104_781_11462600_148_35655_030 Sorgh... 62 3e-023
gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sor... 110 6e-023
gb|CW227956.1|CW227956 104_667_11206095_116_37239_054 Sorgh... 94 3e-022
gb|BF420999.1|BF420999 FM1_5_A06.b1_A003 Floral-Induced Mer... 106 5e-022
gb|BF586175.1|BF586175 FM1_26_F08.b1_A003 Floral-Induced Me... 106 5e-022
gb|BG240385.1|BG240385 OV1_29_D04.b1_A002 Ovary 1 (OV1) Sor... 106 5e-022
gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum b... 106 5e-022
gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorgh... 105 1e-021
gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorgh... 105 1e-021
gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorgh... 105 1e-021
gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum m... 105 1e-021
>gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 5', mRNA sequence
Length = 727
Score = 359 bits (779), Expect = 4e-098
Identities = 143/159 (89%), Positives = 152/159 (95%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RSFRWNLTASAARPNPQGSYHYGQINITRTI+L +GRGKVDGKERF NGVSHVDPE
Sbjct: 249 NQARSFRWNLTASAARPNPQGSYHYGQINITRTIRLGIGRGKVDGKERFGINGVSHVDPE 428
Query: 185 TPVKLAEYFNASDGVFKYNLIGDVPPSNTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDT 364
TPVKLAEYFNA+DGVF+Y+LIGDVPP+ +APTKMAPNV+RAEFRTFIEVVFENPEKSIDT
Sbjct: 429 TPVKLAEYFNATDGVFQYDLIGDVPPAKSAPTKMAPNVLRAEFRTFIEVVFENPEKSIDT 608
Query: 365 IHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQV 481
HIDGYAFFAVGMGPGKWTPA RSTYNLLDTVSRHT+QV
Sbjct: 609 FHIDGYAFFAVGMGPGKWTPACRSTYNLLDTVSRHTVQV 725
Score = 331 bits (717), Expect = 1e-089
Identities = 142/160 (88%), Positives = 143/160 (89%)
Frame = -2 / -1
Query: 483 YTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSA 304
YTW VCRLTVSRRLYVLR AGVHLPGPMPTAK A*PSMW VSMLFSGFS TTSMKVRNSA
Sbjct: 727 YTWTVCRLTVSRRLYVLRHAGVHLPGPMPTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSA 548
Query: 303 RMTLGAILVGAVLEGGTSPMRLYLNTPSLALKYSASLTGVSGSTCDTPLKANLSLPSTLP 124
R TLGAILVGA L GGTSPMR Y NTPS+ALKYSAS TGVSGSTCDTPL N SLPSTLP
Sbjct: 547 RRTLGAILVGADLAGGTSPMRSYWNTPSVALKYSASFTGVSGSTCDTPLMPNRSLPSTLP 368
Query: 123 RPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQRKDLHWL 4
RPM SLMVRVMLI P*WYDPCGLGRAALAVRFQRKDL WL
Sbjct: 367 RPMPSLMVRVMLICP*WYDPCGLGRAALAVRFQRKDLAWL 248
Score = 125 bits (267), Expect(3) = 1e-043
Identities = 51/62 (82%), Positives = 53/62 (85%)
Frame = +1 / +2
Query: 4 QPVQVLPLEPDGQRGAAQPAGVVPLRPDQHHPHHQARHGPRQGRRQGEVRLQRRVARGPG 183
QP QVLPLEPDG+RGAAQPAGVVPLR DQHH HHQARH QG RQG VR QRRVARGPG
Sbjct: 248 QPGQVLPLEPDGERGAAQPAGVVPLRADQHHTHHQARHRAGQGGRQGAVRHQRRVARGPG 427
Query: 184 NP 189
+P
Sbjct: 428 DP 433
Score = 81.7 bits (172), Expect(3) = 2e-039
Identities = 36/48 (75%), Positives = 37/48 (77%)
Frame = -1 / -3
Query: 253 VPDEVVLEHAVAGVEVLGELDGGFRVHVRHAVEGEPLLAVDLAAAHGE 110
V DEVVLEH V GVEVLGEL GG RVHVRHAV+ EPLLAV LA E
Sbjct: 497 VADEVVLEHPVGGVEVLGELHGGLRVHVRHAVDAEPLLAVHLAPPDAE 354
Score = 74.4 bits (156), Expect(3) = 2e-039
Identities = 31/36 (86%), Positives = 31/36 (86%)
Frame = -3 / -2
Query: 113 RA*WCG*C*SGRSGTTPAGWAAPRWPSGSSGRTCTG 6
RA*WC *C*S RSGTTPAGWAAPR PSGSSGRT G
Sbjct: 357 RA*WCV*C*SARSGTTPAGWAAPRSPSGSSGRTWPG 250
Score = 55.6 bits (115), Expect(3) = 1e-043
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +1 / +2
Query: 409 GQMDASVPEHVQPPGHGEPAH 471
GQMDASVPE+VQPPGHGEPAH
Sbjct: 653 GQMDASVPEYVQPPGHGEPAH 715
Score = 51.5 bits (106), Expect(3) = 2e-039
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -1 / -3
Query: 463 AHRVQEVVRAPGRWRPFARAH 401
AHRVQEVVR P RWRPFARAH
Sbjct: 707 AHRVQEVVRTPARWRPFARAH 645
Score = 36.3 bits (73), Expect(3) = 1e-043
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +1 / +2
Query: 256 AALQHGPHQDGPQRHPRRVPH 318
AA Q HQDG QR PRRVPH
Sbjct: 500 AASQIRAHQDGSQRPPRRVPH 562
>gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 600
Score = 244 bits (527), Expect(3) = 1e-085
Identities = 97/106 (91%), Positives = 101/106 (95%)
Frame = +2 / +1
Query: 392 AVGMGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYL 571
A MGPGKWTPA RSTYNLLDTVSRHT+QVYPRSWTAVMMTFDNAGMWSIRSNIWER YL
Sbjct: 205 ACSMGPGKWTPACRSTYNLLDTVSRHTVQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYL 384
Query: 572 GEQLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYLSV*SM 709
GEQLY+SV SPERSLRDEYNMPETSLRCGKVVGLP+PPSYLSV*S+
Sbjct: 385 GEQLYISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSYLSV*SI 522
Score = 218 bits (471), Expect(3) = 8e-075
Identities = 94/103 (91%), Positives = 96/103 (93%)
Frame = -2 / -2
Query: 708 ML*TER*DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHM 529
ML*TER*DGG G PTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQMLDR+LHM
Sbjct: 521 ML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHM 342
Query: 528 PALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPM 400
PALSNVIITAVHDLGYTW VCRLTVSRRLYVLR AGVHLPGPM
Sbjct: 341 PALSNVIITAVHDLGYTWTVCRLTVSRRLYVLRHAGVHLPGPM 213
Score = 117 bits (250), Expect(2) = 1e-034
Identities = 50/60 (83%), Positives = 52/60 (86%)
Frame = -1 / -1
Query: 718 RCVHALDGEVGRRHWQSDDLAAAEASLRHVVLVPERPLRRDDAHVQLLAEVLPLPDVGPD 539
R ALDGEVGRR WQ+DDLAAAEA L HVVLVPERPLRR DA VQLLAEV+PLPDVGPD
Sbjct: 531 RPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPD 352
Score = 108 bits (230), Expect(3) = 4e-043
Identities = 47/64 (73%), Positives = 48/64 (75%)
Frame = +1 / +3
Query: 517 RQRGHVEHPVQHLGXXXXXXXXXXXXHLAGAVAQGRVQHAGD*PPLRQGRRTANAAVLPL 696
RQRGHVE+PVQHLG HLAGAVAQGRVQHA D PPLRQGRR A AAVLPL
Sbjct: 330 RQRGHVEYPVQHLGEELPRRAAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVLPL 509
Query: 697 RLEH 708
RLEH
Sbjct: 510 RLEH 521
Score = 90.0 bits (190), Expect(3) = 1e-085
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +2 / +2
Query: 287 APNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVG 400
APNV+RAEFRTFIEVVFENPEKSIDT HIDGYAFFAVG
Sbjct: 2 APNVLRAEFRTFIEVVFENPEKSIDTFHIDGYAFFAVG 115
Score = 85.8 bits (181), Expect(3) = 4e-043
Identities = 37/40 (92%), Positives = 37/40 (92%)
Frame = +3 / +2
Query: 414 NGRQRPGARTTSWTR*AGTRSRCTLGRGRR***RSTTRAC 533
NGRQR G RTTSWTR*AGTRSRCT GRGRR***RSTTRAC
Sbjct: 227 NGRQRAGVRTTSWTR*AGTRSRCTRGRGRR***RSTTRAC 346
Score = 78.5 bits (165), Expect(3) = 8e-075
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -2 / -1
Query: 399 PTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARMTLGA 286
PTAK A*PSMW VSMLFSGFS TTSMKVRNSAR TLGA
Sbjct: 114 PTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSARRTLGA 1
Score = 51.5 bits (106), Expect(2) = 1e-034
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -1 / -1
Query: 463 AHRVQEVVRAPGRWRPFARAH 401
AHRVQEVVR P RWRPFARAH
Sbjct: 276 AHRVQEVVRTPARWRPFARAH 214
Score = 25.4 bits (49), Expect(3) = 4e-043
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / +1
Query: 286 GPQRHPRRVPH 318
G QR PRRVPH
Sbjct: 1 GSQRPPRRVPH 33
Score = 24.9 bits (48), Expect(3) = 8e-075
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1 / -2
Query: 778 SFKLCIQHRAHVMEGRGNRAR 716
SF +C+QHRA RG R
Sbjct: 587 SFLICVQHRARPSW*RGTGGR 525
Score = 24.4 bits (47), Expect(3) = 1e-085
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2 / +3
Query: 710 HASRSVSPSFHHVRTVLYTQFKG 778
H + SPS RTVLYT KG
Sbjct: 519 HRPAAGSPSPRWPRTVLYTN*KG 587
>gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 523
Score = 291 bits (629), Expect(2) = 3e-081
Identities = 116/129 (89%), Positives = 124/129 (96%)
Frame = +2 / +1
Query: 14 RSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPV 193
RSFRWNLTASAARPNPQGSYHYGQINITRTI+L +GRGKVDGKERF NGVSHVDPETPV
Sbjct: 1 RSFRWNLTASAARPNPQGSYHYGQINITRTIRLGIGRGKVDGKERFGINGVSHVDPETPV 180
Query: 194 KLAEYFNASDGVFKYNLIGDVPPSNTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHI 373
KLAEYFNA+DGVF+Y+LIGDVPP+ +APTKMAPNV+RAEFRTFIEVVFENPEKSIDT HI
Sbjct: 181 KLAEYFNATDGVFQYDLIGDVPPAKSAPTKMAPNVLRAEFRTFIEVVFENPEKSIDTFHI 360
Query: 374 DGYAFFAVG 400
DGYAFFAVG
Sbjct: 361 DGYAFFAVG 387
Score = 259 bits (559), Expect(2) = 4e-071
Identities = 113/128 (88%), Positives = 114/128 (89%)
Frame = -2 / -3
Query: 399 PTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARMTLGAILVGAVLEGGTSPMRLYLNTPS 220
PTAK A*PSMW VSMLFSGFS TTSMKVRNSAR TLGAILVGA L GGTSPMR Y NTPS
Sbjct: 386 PTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSARRTLGAILVGADLAGGTSPMRSYWNTPS 207
Query: 219 LALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAAL 40
+ALKYSAS TGVSGSTCDTPL N SLPSTLPRPM SLMVRVMLI P*WYDPCGLGRAAL
Sbjct: 206 VALKYSASFTGVSGSTCDTPLMPNRSLPSTLPRPMPSLMVRVMLICP*WYDPCGLGRAAL 27
Query: 39 AVRFQRKD 16
AVRFQRKD
Sbjct: 26 AVRFQRKD 3
Score = 118 bits (253), Expect(3) = 7e-031
Identities = 48/58 (82%), Positives = 50/58 (86%)
Frame = +1 / +3
Query: 16 VLPLEPDGQRGAAQPAGVVPLRPDQHHPHHQARHGPRQGRRQGEVRLQRRVARGPGNP 189
VLPLEPDG+RGAAQPAGVVPLR DQHH HHQARH QG RQG VR QRRVARGPG+P
Sbjct: 3 VLPLEPDGERGAAQPAGVVPLRADQHHTHHQARHRAGQGGRQGAVRHQRRVARGPGDP 176
Score = 81.7 bits (172), Expect(3) = 2e-032
Identities = 36/48 (75%), Positives = 37/48 (77%)
Frame = -1 / -2
Query: 253 VPDEVVLEHAVAGVEVLGELDGGFRVHVRHAVEGEPLLAVDLAAAHGE 110
V DEVVLEH V GVEVLGEL GG RVHVRHAV+ EPLLAV LA E
Sbjct: 240 VADEVVLEHPVGGVEVLGELHGGLRVHVRHAVDAEPLLAVHLAPPDAE 97
Score = 73.0 bits (153), Expect(3) = 2e-032
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = -3 / -1
Query: 113 RA*WCG*C*SGRSGTTPAGWAAPRWPSGSSGRT 15
RA*WC *C*S RSGTTPAGWAAPR PSGSSGRT
Sbjct: 100 RA*WCV*C*SARSGTTPAGWAAPRSPSGSSGRT 2
Score = 36.3 bits (73), Expect(3) = 7e-031
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +1 / +3
Query: 256 AALQHGPHQDGPQRHPRRVPH 318
AA Q HQDG QR PRRVPH
Sbjct: 243 AASQIRAHQDGSQRPPRRVPH 305
Score = 33.6 bits (67), Expect(2) = 3e-081
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 392 AVGMGPGKWTPASRS 436
A MGPGKWTPA RS
Sbjct: 477 ACSMGPGKWTPACRS 521
Score = 31.8 bits (63), Expect(2) = 4e-071
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -2 / -1
Query: 438 VLRDAGVHLPGPM 400
VLR AGVHLPGPM
Sbjct: 523 VLRHAGVHLPGPM 485
Score = 28.1 bits (55), Expect(3) = 2e-032
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -3
Query: 433 PGRWRPFARAH 401
P RW PFARAH
Sbjct: 518 PARWGPFARAH 486
Score = 22.6 bits (43), Expect(3) = 7e-031
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 409 GQMDASVPEH 438
GQMD SVPE+
Sbjct: 494 GQMDPSVPEY 523
>gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526807, DNA
sequence
Length = 622
Score = 209 bits (451), Expect(3) = 5e-080
Identities = 79/97 (81%), Positives = 88/97 (90%)
Frame = +2 / -3
Query: 401 MGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQ 580
MGPG+W+P +R TYNLLD VSRHTIQVYPRSWTA+M+TFDNAGMWS+RSNIWER YLGEQ
Sbjct: 350 MGPGQWSPEARVTYNLLDAVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQ 171
Query: 581 LYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSY 691
Y+SVISPE SLRDEYNMP+ LR GKVVGLP+PPSY
Sbjct: 170 FYISVISPEHSLRDEYNMPDNDLRRGKVVGLPLPPSY 60
Score = 163 bits (351), Expect(2) = 4e-058
Identities = 72/97 (74%), Positives = 78/97 (80%)
Frame = -2 / +1
Query: 690 *DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNV 511
*DGG GSPTTLP+RR +SGMLYSS S+ SGEMTL +CSPR SQMLDR LHMPALSNV
Sbjct: 61 *DGGSGSPTTLPRRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALSNV 240
Query: 510 IITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPM 400
I AVHDLGYTWIVCRLT S RLYV +G H PGP+
Sbjct: 241 SIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCPGPI 351
Score = 100 bits (214), Expect(3) = 5e-080
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +2 / -3
Query: 227 VFKYNLIGDVPPSNTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVG 400
VF YN +GDVPP+ P + PNVI AEF TFIE+V ENPEKS+D+IH+DGYAFF VG
Sbjct: 620 VFSYNQMGDVPPAVNGPLHVVPNVITAEFGTFIEMVLENPEKSLDSIHLDGYAFFGVG 447
Score = 83.5 bits (176), Expect(2) = 4e-058
Identities = 40/58 (68%), Positives = 41/58 (70%)
Frame = -2 / +1
Query: 399 PTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARMTLGAILVGAVLEGGTSPMRLYLNT 226
PT KKA*PS WM S LFSGFSKT SMKV NSA MTLG G GGTSP+ L LNT
Sbjct: 448 PTPKKA*PSRWMESKLFSGFSKTISMKVPNSAVMTLGTTWRGPFTAGGTSPIWL*LNT 621
Score = 78.5 bits (165), Expect(2) = 1e-028
Identities = 36/58 (62%), Positives = 37/58 (63%)
Frame = +1 / -2
Query: 517 RQRGHVEHPVQHLGXXXXXXXXXXXXHLAGAVAQGRVQHAGD*PPLRQGRRTANAAVL 690
RQRGHVE PVQHLG HLAGA+A RVQHAG PP RQGR A AAVL
Sbjct: 234 RQRGHVERPVQHLGALLPRGAVLHQRHLAGALAARRVQHAGQRPPPRQGRGAAAAAVL 61
Score = 70.3 bits (147), Expect(2) = 1e-028
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = +3 / -1
Query: 414 NGRQRPGARTTSWTR*AGTRSRCTLGRGRR***RSTTRAC 533
+GR+R G RTT WTR*AGTRSRCT G GRR *RSTTRAC
Sbjct: 337 SGRRRRG*RTTCWTR*AGTRSRCTRGHGRRLC*RSTTRAC 218
Score = 29.0 bits (57), Expect(3) = 5e-080
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3 / -1
Query: 672 CQCRRPTSPSRACTHLARFPLPSITC 749
C+CRRPT P T A P S +C
Sbjct: 79 CRCRRPTPPRAKMTKQAPGPSCSDSC 2
>gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 5', mRNA sequence
Length = 545
Score = 183 bits (394), Expect(2) = 3e-077
Identities = 69/88 (78%), Positives = 79/88 (89%)
Frame = +2 / +3
Query: 275 PTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLD 454
P + PNVI AEFRTFIE+VFENPEKS+D+IH+DGYAFF VGMGPG+W+P +R TYNLLD
Sbjct: 282 PLHVVPNVITAEFRTFIEIVFENPEKSLDSIHLDGYAFFGVGMGPGQWSPEARVTYNLLD 461
Query: 455 TVSRHTIQVYPRSWTAVMMTFDNAGMWS 538
VSRHTIQVYPRSWTA+M+TF NAGMWS
Sbjct: 462 AVSRHTIQVYPRSWTAIMLTFYNAGMWS 545
Score = 149 bits (321), Expect(2) = 2e-059
Identities = 65/83 (78%), Positives = 67/83 (80%)
Frame = -2 / -2
Query: 537 LHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVS 358
LHMPAL NV I AVHDLGYTWIVCRLT S RLYV +G H PGP+PT KKA*PS WM S
Sbjct: 544 LHMPAL*NVSIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCPGPIPTPKKA*PSRWMES 365
Query: 357 MLFSGFSKTTSMKVRNSARMTLG 289
LFSGFSKT SMKVRNSA MTLG
Sbjct: 364 KLFSGFSKTISMKVRNSAVMTLG 296
Score = 127 bits (273), Expect(2) = 3e-077
Identities = 49/63 (77%), Positives = 55/63 (87%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLT+SAARPNPQGSYHYGQINITRTI++ + RG +DGK R+ FNGVSH DPE
Sbjct: 87 NQARSIRWNLTSSAARPNPQGSYHYGQINITRTIRVMVSRGHIDGKLRYGFNGVSHRDPE 266
Query: 185 TPV 193
TPV
Sbjct: 267 TPV 275
Score = 101 bits (216), Expect(2) = 2e-059
Identities = 45/73 (61%), Positives = 50/73 (68%)
Frame = -2 / -2
Query: 222 SLALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAA 43
+L + TGVSGS +TPLK SLPS P +LMVRVMLIWP*W +PCGLGRAA
Sbjct: 304 TLGTTWRGPFTGVSGSLWETPLKPYRSLPSMWPLETMTLMVRVMLIWP*W*EPCGLGRAA 125
Query: 42 LAVRFQRKDLHWL 4
L VRF R DL WL
Sbjct: 124 LDVRFHRIDLAWL 86
Score = 91.8 bits (194), Expect(3) = 4e-034
Identities = 38/62 (61%), Positives = 45/62 (72%)
Frame = +1 / +2
Query: 4 QPVQVLPLEPDGQRGAAQPAGVVPLRPDQHHPHHQARHGPRQGRRQGEVRLQRRVARGPG 183
QP +V P+EPD QRGAAQPAG++PLRPDQHH HHQ RRQ VRLQ R+ +GP
Sbjct: 86 QPGEVDPVEPDVQRGAAQPAGLLPLRPDQHHTHHQGHGLQGPHRRQAPVRLQWRLPQGPR 265
Query: 184 NP 189
+P
Sbjct: 266 DP 271
Score = 70.3 bits (147), Expect(3) = 4e-034
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = +3 / +1
Query: 414 NGRQRPGARTTSWTR*AGTRSRCTLGRGRR***RSTTRAC 533
+GR+R G RTT WTR*AGTRSRCT G GRR *RSTTRAC
Sbjct: 421 SGRRRRG*RTTCWTR*AGTRSRCTRGHGRRLC*RSTTRAC 540
Score = 23.1 bits (44), Expect(3) = 4e-034
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1 / +2
Query: 289 PQRHPRRVPH 318
PQ H RRVPH
Sbjct: 296 PQCHHRRVPH 325
>gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509838, DNA
sequence
Length = 625
Score = 255 bits (552), Expect = 8e-067
Identities = 99/132 (75%), Positives = 113/132 (85%)
Frame = +2 / -1
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLT+SAARPNPQGSYHYGQINITRTI++ + RG +DGK R+ FNGVSH DPE
Sbjct: 412 NQARSIRWNLTSSAARPNPQGSYHYGQINITRTIRVMVSRGHIDGKLRYGFNGVSHRDPE 233
Query: 185 TPVKLAEYFNASDGVFKYNLIGDVPPSNTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDT 364
TPVKLAEYFN +DGVF YN +GDVPP+ P + PNVI AEFRTFIE+VFENPEKS+D+
Sbjct: 232 TPVKLAEYFNVTDGVFSYNQMGDVPPAVNGPLHVVPNVITAEFRTFIEIVFENPEKSLDS 53
Query: 365 IHIDGYAFFAVG 400
IH+DGYAFF VG
Sbjct: 52 IHLDGYAFFGVG 17
Score = 202 bits (436), Expect = 8e-051
Identities = 93/132 (70%), Positives = 98/132 (74%)
Frame = -2 / +3
Query: 399 PTAKKA*PSMWMVSMLFSGFSKTTSMKVRNSARMTLGAILVGAVLEGGTSPMRLYLNTPS 220
PT KKA*PS WM S LFSGFSKT SMKVRNSA MTLG G GGTSP+ L LNTPS
Sbjct: 18 PTPKKA*PSRWMESKLFSGFSKTISMKVRNSAVMTLGTTWRGPFTAGGTSPIWL*LNTPS 197
Query: 219 LALKYSASLTGVSGSTCDTPLKANLSLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAAL 40
+ LKYSAS TGVSGS +TPLK SLPS P +LMVRVMLIWP*W +PCGLGRAAL
Sbjct: 198 VTLKYSASFTGVSGSLWETPLKPYRSLPSMWPLETMTLMVRVMLIWP*W*EPCGLGRAAL 377
Query: 39 AVRFQRKDLHWL 4
VRF R DL WL
Sbjct: 378 DVRFHRIDLAWL 413
>gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236g18, DNA
sequence
Length = 593
Score = 237 bits (513), Expect = 2e-061
Identities = 94/107 (87%), Positives = 102/107 (95%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RSFRWNLTASAARPNPQGSYHYGQINITRTI+L +GRGKVDGKERF NGVSHVDPE
Sbjct: 273 NQARSFRWNLTASAARPNPQGSYHYGQINITRTIRLGIGRGKVDGKERFGINGVSHVDPE 452
Query: 185 TPVKLAEYFNASDGVFKYNLIGDVPPSNTAPTKMAPNVIRAEFRTFI 325
TPVKLAEYFNA+DGVF+Y+LIGDVPP+ +APTKMAPNV+RAEFRTFI
Sbjct: 453 TPVKLAEYFNATDGVFQYDLIGDVPPAKSAPTKMAPNVLRAEFRTFI 593
Score = 216 bits (467), Expect = 4e-055
Identities = 94/107 (87%), Positives = 95/107 (88%)
Frame = -2 / -2
Query: 324 MKVRNSARMTLGAILVGAVLEGGTSPMRLYLNTPSLALKYSASLTGVSGSTCDTPLKANL 145
MKVRNSAR TLGAILVGA L GGTSPMR Y NTPS+ALKYSAS TGVSGSTCDTPL N
Sbjct: 592 MKVRNSARRTLGAILVGADLAGGTSPMRSYWNTPSVALKYSASFTGVSGSTCDTPLMPNR 413
Query: 144 SLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQRKDLHWL 4
SLPSTLPRPM SLMVRVMLI P*WYDPCGLGRAALAVRFQRKDL WL
Sbjct: 412 SLPSTLPRPMPSLMVRVMLICP*WYDPCGLGRAALAVRFQRKDLAWL 272
Score = 125 bits (267), Expect(2) = 2e-032
Identities = 51/62 (82%), Positives = 53/62 (85%)
Frame = +1 / +2
Query: 4 QPVQVLPLEPDGQRGAAQPAGVVPLRPDQHHPHHQARHGPRQGRRQGEVRLQRRVARGPG 183
QP QVLPLEPDG+RGAAQPAGVVPLR DQHH HHQARH QG RQG VR QRRVARGPG
Sbjct: 272 QPGQVLPLEPDGERGAAQPAGVVPLRADQHHTHHQARHRAGQGGRQGAVRHQRRVARGPG 451
Query: 184 NP 189
+P
Sbjct: 452 DP 457
Score = 81.7 bits (172), Expect(2) = 7e-031
Identities = 36/48 (75%), Positives = 37/48 (77%)
Frame = -1 / -1
Query: 253 VPDEVVLEHAVAGVEVLGELDGGFRVHVRHAVEGEPLLAVDLAAAHGE 110
V DEVVLEH V GVEVLGEL GG RVHVRHAV+ EPLLAV LA E
Sbjct: 521 VADEVVLEHPVGGVEVLGELHGGLRVHVRHAVDAEPLLAVHLAPPDAE 378
Score = 74.4 bits (156), Expect(2) = 7e-031
Identities = 31/36 (86%), Positives = 31/36 (86%)
Frame = -3 / -3
Query: 113 RA*WCG*C*SGRSGTTPAGWAAPRWPSGSSGRTCTG 6
RA*WC *C*S RSGTTPAGWAAPR PSGSSGRT G
Sbjct: 381 RA*WCV*C*SARSGTTPAGWAAPRSPSGSSGRTWPG 274
Score = 36.3 bits (73), Expect(2) = 2e-032
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +1 / +2
Query: 256 AALQHGPHQDGPQRHPRRVPH 318
AA Q HQDG QR PRRVPH
Sbjct: 524 AASQIRAHQDGSQRPPRRVPH 586
>gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 661
Score = 232 bits (501), Expect(2) = 6e-061
Identities = 93/102 (91%), Positives = 98/102 (96%)
Frame = +2 / -3
Query: 404 GPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQL 583
GPGK TPA RSTYNLLDT+SRHT+QVYPRSWTAVMMTFDNAGMWSIRSNIWER YLGEQL
Sbjct: 647 GPGK*TPACRSTYNLLDTLSRHTVQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQL 468
Query: 584 YVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYLSV*SM 709
Y+SV SPERSLRDEYNMPETSLRCGKVVGLP+PPSYLSV*S+
Sbjct: 467 YISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSYLSV*SI 342
Score = 214 bits (461), Expect(3) = 6e-057
Identities = 92/102 (90%), Positives = 94/102 (92%)
Frame = -2 / +1
Query: 708 ML*TER*DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHM 529
ML*TER*DGG G PTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQMLDR+LHM
Sbjct: 343 ML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHM 522
Query: 528 PALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGP 403
PALSNVIITAVHDLGYTW VCRL VSRRLYVLR AGVHLPGP
Sbjct: 523 PALSNVIITAVHDLGYTWTVCRLNVSRRLYVLRHAGVHLPGP 648
Score = 117 bits (250), Expect(2) = 2e-031
Identities = 50/60 (83%), Positives = 52/60 (86%)
Frame = -1 / +3
Query: 718 RCVHALDGEVGRRHWQSDDLAAAEASLRHVVLVPERPLRRDDAHVQLLAEVLPLPDVGPD 539
R ALDGEVGRR WQ+DDLAAAEA L HVVLVPERPLRR DA VQLLAEV+PLPDVGPD
Sbjct: 333 RPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPD 512
Score = 108 bits (230), Expect(3) = 3e-041
Identities = 47/64 (73%), Positives = 48/64 (75%)
Frame = +1 / -2
Query: 517 RQRGHVEHPVQHLGXXXXXXXXXXXXHLAGAVAQGRVQHAGD*PPLRQGRRTANAAVLPL 696
RQRGHVE+PVQHLG HLAGAVAQGRVQHA D PPLRQGRR A AAVLPL
Sbjct: 534 RQRGHVEYPVQHLGEELPRRAAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVLPL 355
Query: 697 RLEH 708
RLEH
Sbjct: 354 RLEH 343
Score = 82.2 bits (173), Expect(3) = 3e-041
Identities = 36/40 (90%), Positives = 36/40 (90%)
Frame = +3 / -1
Query: 414 NGRQRPGARTTSWTR*AGTRSRCTLGRGRR***RSTTRAC 533
N RQR G RTTSWTR*AGTRSRCT GRGRR***RSTTRAC
Sbjct: 637 NERQRAGVRTTSWTR*AGTRSRCTRGRGRR***RSTTRAC 518
Score = 40.5 bits (82), Expect(2) = 2e-031
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = -1 / +3
Query: 463 AHRVQEVVRAPGRWRPFARA 404
A RVQEVVR P RWR FARA
Sbjct: 588 AQRVQEVVRTPARWRSFARA 647
Score = 24.9 bits (48), Expect(3) = 6e-057
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1 / +1
Query: 778 SFKLCIQHRAHVMEGRGNRAR 716
SF +C+QHRA RG R
Sbjct: 277 SFLICVQHRARPSW*RGTGGR 339
Score = 24.4 bits (47), Expect(2) = 6e-061
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2 / -2
Query: 710 HASRSVSPSFHHVRTVLYTQFKG 778
H + SPS RTVLYT KG
Sbjct: 345 HRPAAGSPSPRWPRTVLYTN*KG 277
Score = 23.1 bits (44), Expect(3) = 3e-041
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1 / -1
Query: 952 HA*THRDAVSNHCRS 996
H R VSNHCRS
Sbjct: 58 HLEIRRRLVSNHCRS 14
Score = 23.1 bits (44), Expect(3) = 6e-057
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / +3
Query: 859 RRDDERTNELG 827
RR DER NELG
Sbjct: 228 RRRDERINELG 260
>gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E06_A002 3', mRNA sequence
Length = 691
Score = 184 bits (397), Expect(4) = 5e-058
Identities = 73/79 (92%), Positives = 77/79 (97%)
Frame = +2 / +2
Query: 473 IQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 652
+QVYPRSWTAVMMTFDNAGMWSIRSNIWER YLGEQLY+SV SPERSLRDEYNMPETSLR
Sbjct: 2 VQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQLYISVTSPERSLRDEYNMPETSLR 181
Query: 653 CGKVVGLPMPPSYLSV*SM 709
CGKVVGLP+PPSYLSV*S+
Sbjct: 182 CGKVVGLPLPPSYLSV*SI 238
Score = 164 bits (353), Expect(4) = 3e-052
Identities = 71/78 (91%), Positives = 73/78 (93%)
Frame = -2 / -2
Query: 708 ML*TER*DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHM 529
ML*TER*DGG G PTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQMLDR+LHM
Sbjct: 237 ML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHM 58
Query: 528 PALSNVIITAVHDLGYTW 475
PALSNVIITAVHDLGYTW
Sbjct: 57 PALSNVIITAVHDLGYTW 4
Score = 117 bits (250), Expect(2) = 8e-034
Identities = 50/60 (83%), Positives = 52/60 (86%)
Frame = -1 / -1
Query: 718 RCVHALDGEVGRRHWQSDDLAAAEASLRHVVLVPERPLRRDDAHVQLLAEVLPLPDVGPD 539
R ALDGEVGRR WQ+DDLAAAEA L HVVLVPERPLRR DA VQLLAEV+PLPDVGPD
Sbjct: 247 RPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLPDVGPD 68
Score = 108 bits (230), Expect(3) = 2e-037
Identities = 47/64 (73%), Positives = 48/64 (75%)
Frame = +1 / +1
Query: 517 RQRGHVEHPVQHLGXXXXXXXXXXXXHLAGAVAQGRVQHAGD*PPLRQGRRTANAAVLPL 696
RQRGHVE+PVQHLG HLAGAVAQGRVQHA D PPLRQGRR A AAVLPL
Sbjct: 46 RQRGHVEYPVQHLGEELPRRAAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVLPL 225
Query: 697 RLEH 708
RLEH
Sbjct: 226 RLEH 237
Score = 57.4 bits (119), Expect(4) = 3e-052
Identities = 25/35 (71%), Positives = 25/35 (71%)
Frame = -3 / -2
Query: 1106 TSKLNQETCMYIYINIKNNFWLRDLLDRQDYISSY 1002
TSKLNQET Y K FWLRDLLDRQ YISSY
Sbjct: 690 TSKLNQETYACTYT*YKEQFWLRDLLDRQAYISSY 586
Score = 57.0 bits (118), Expect(4) = 5e-058
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +1 / +2
Query: 1003 YDDI*SCLSNKSLSQKLFFIFMYMYMHVS*FNFDV 1107
YDDI*+CLSNKSLSQ ++Y++ +VS*FNFDV
Sbjct: 587 YDDI*ACLSNKSLSQNCSLYYVYVHAYVS*FNFDV 691
Score = 51.5 bits (106), Expect(2) = 8e-034
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = -1 / -3
Query: 1105 HQS*IRRHACTYT*I*RTIFG*GTY*IDRIIYHHI 1001
HQS*IRRH + + FG*GTY*IDR+IYHHI
Sbjct: 689 HQS*IRRHMHVHIHNIKNSFG*GTY*IDRLIYHHI 585
Score = 49.2 bits (101), Expect(3) = 2e-037
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2 / +3
Query: 1004 MMIYNPVYLISPSAKNCSLYLCICTCMSPDSTLM 1105
MMIY PVYLISPSAK + + MSPDSTLM
Sbjct: 588 MMIYKPVYLISPSAKTVLYIMYMYMHMSPDSTLM 689
Score = 43.2 bits (88), Expect(3) = 2e-037
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3 / +3
Query: 474 SRCTLGRGRR***RSTTRAC 533
SRCT GRGRR***RSTTRAC
Sbjct: 3 SRCTRGRGRR***RSTTRAC 62
Score = 24.9 bits (48), Expect(4) = 3e-052
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1 / -2
Query: 778 SFKLCIQHRAHVMEGRGNRAR 716
SF +C+QHRA RG R
Sbjct: 303 SFLICVQHRARPSW*RGTGGR 241
Score = 24.4 bits (47), Expect(4) = 5e-058
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2 / +1
Query: 710 HASRSVSPSFHHVRTVLYTQFKG 778
H + SPS RTVLYT KG
Sbjct: 235 HRPAAGSPSPRWPRTVLYTN*KG 303
Score = 23.1 bits (44), Expect(4) = 5e-058
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1 / +1
Query: 952 HA*THRDAVSNHCRS 996
H R VSNHCRS
Sbjct: 523 HLEIRRRLVSNHCRS 567
Score = 22.6 bits (43), Expect(4) = 3e-052
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1 / -3
Query: 859 RRDDERTNELGG 824
RR DER NEL G
Sbjct: 353 RRRDERINELXG 318
>gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 437
Score = 206 bits (445), Expect(2) = 1e-054
Identities = 77/94 (81%), Positives = 86/94 (91%)
Frame = +2 / +3
Query: 410 GKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYV 589
G+W+P +R TYNLLD VSRHTIQVYPRSWTA+M+TFDNAGMWS+RSNIWER YLGEQ Y+
Sbjct: 3 GQWSPEARVTYNLLDAVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYI 182
Query: 590 SVISPERSLRDEYNMPETSLRCGKVVGLPMPPSY 691
SVISPE SLRDEYNMP+ LRCGKVVGLP+PPSY
Sbjct: 183 SVISPEHSLRDEYNMPDNDLRCGKVVGLPLPPSY 284
Score = 159 bits (341), Expect = 1e-037
Identities = 71/94 (75%), Positives = 75/94 (79%)
Frame = -2 / -2
Query: 690 *DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNV 511
*DGG GSPTTLPQRR +SGMLYSS S+ SGEMTL +CSPR SQMLDR LHMPALSNV
Sbjct: 283 *DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALSNV 104
Query: 510 IITAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLP 409
I AVHDLGYTWIVCRLT S RLYV +G H P
Sbjct: 103 SIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCP 2
Score = 81.7 bits (172), Expect(2) = 1e-029
Identities = 37/58 (63%), Positives = 38/58 (65%)
Frame = +1 / +2
Query: 517 RQRGHVEHPVQHLGXXXXXXXXXXXXHLAGAVAQGRVQHAGD*PPLRQGRRTANAAVL 690
RQRGHVE PVQHLG HLAGA+A RVQHAG PPLRQGR A AAVL
Sbjct: 110 RQRGHVERPVQHLGALLPRGAVLHQRHLAGALAARRVQHAGQRPPLRQGRGAAAAAVL 283
Score = 70.3 bits (147), Expect(2) = 1e-029
Identities = 31/40 (77%), Positives = 33/40 (82%)
Frame = +3 / +1
Query: 414 NGRQRPGARTTSWTR*AGTRSRCTLGRGRR***RSTTRAC 533
+GR+R G RTT WTR*AGTRSRCT G GRR *RSTTRAC
Sbjct: 7 SGRRRRG*RTTCWTR*AGTRSRCTRGHGRRLC*RSTTRAC 126
Score = 29.0 bits (57), Expect(2) = 1e-054
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3 / +1
Query: 672 CQCRRPTSPSRACTHLARFPLPSITC 749
C+CRRPT P T A P S +C
Sbjct: 265 CRCRRPTPPRAKMTKQAPGPSCSDSC 342
>gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_A11_A002 5', mRNA sequence
Length = 565
Score = 201 bits (434), Expect = 1e-050
Identities = 79/107 (73%), Positives = 89/107 (83%)
Frame = +2 / +1
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLT+SAARPNPQGSYHYGQINITRTI++ + RG +DGK R+ FNGVSH DPE
Sbjct: 244 NQARSIRWNLTSSAARPNPQGSYHYGQINITRTIRVMVSRGHIDGKLRYGFNGVSHRDPE 423
Query: 185 TPVKLAEYFNASDGVFKYNLIGDVPPSNTAPTKMAPNVIRAEFRTFI 325
TPVKLAEYFN +DGVF YN +GDVPP+ P + PNVI AEFRTFI
Sbjct: 424 TPVKLAEYFNVTDGVFSYNQMGDVPPAVNGPLHVVPNVITAEFRTFI 564
Score = 158 bits (340), Expect = 1e-037
Identities = 73/107 (68%), Positives = 78/107 (72%)
Frame = -2 / -3
Query: 324 MKVRNSARMTLGAILVGAVLEGGTSPMRLYLNTPSLALKYSASLTGVSGSTCDTPLKANL 145
MKVRNSA MTLG G GGTSP+ L LNTPS+ LKYSAS TGVSGS +TPLK
Sbjct: 563 MKVRNSAVMTLGTTWRGPFTAGGTSPIWL*LNTPSVTLKYSASFTGVSGSLWETPLKPYR 384
Query: 144 SLPSTLPRPMASLMVRVMLIWP*WYDPCGLGRAALAVRFQRKDLHWL 4
SLPS P +LMVRVMLIWP*W +PCGLGRAAL VRF R DL WL
Sbjct: 383 SLPSMWPLETMTLMVRVMLIWP*W*EPCGLGRAALDVRFHRIDLAWL 243
>gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F09_A002 3', mRNA sequence
Length = 658
Score = 168 bits (362), Expect(4) = 2e-050
Identities = 67/72 (93%), Positives = 70/72 (97%)
Frame = +2 / +3
Query: 494 WTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVGL 673
WTAVMMTFDNAGMWSIRSNIWER YLGEQLY+SV SPERSLRDEYNMPETSLRCGKVVGL
Sbjct: 3 WTAVMMTFDNAGMWSIRSNIWERNYLGEQLYISVTSPERSLRDEYNMPETSLRCGKVVGL 182
Query: 674 PMPPSYLSV*SM 709
P+PPSYLSV*S+
Sbjct: 183 PLPPSYLSV*SI 218
Score = 146 bits (314), Expect(4) = 9e-045
Identities = 65/72 (90%), Positives = 67/72 (93%)
Frame = -2 / -1
Query: 708 ML*TER*DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHM 529
ML*TER*DGG G PTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQMLDR+LHM
Sbjct: 217 ML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRILHM 38
Query: 528 PALSNVIITAVH 493
PALSNVIITAVH
Sbjct: 37 PALSNVIITAVH 2
Score = 115 bits (246), Expect(2) = 7e-031
Identities = 49/60 (81%), Positives = 51/60 (85%)
Frame = -1 / -3
Query: 718 RCVHALDGEVGRRHWQSDDLAAAEASLRHVVLVPERPLRRDDAHVQLLAEVLPLPDVGPD 539
R ALDGEVGRR WQ+DDLAAAEA L HVVLVPERPLRR DA VQL AEV+PLPDVGPD
Sbjct: 227 RPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLFAEVIPLPDVGPD 48
Score = 108 bits (230), Expect(3) = 2e-031
Identities = 47/64 (73%), Positives = 48/64 (75%)
Frame = +1 / +2
Query: 517 RQRGHVEHPVQHLGXXXXXXXXXXXXHLAGAVAQGRVQHAGD*PPLRQGRRTANAAVLPL 696
RQRGHVE+PVQHLG HLAGAVAQGRVQHA D PPLRQGRR A AAVLPL
Sbjct: 26 RQRGHVEYPVQHLGEELPRRTAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVLPL 205
Query: 697 RLEH 708
RLEH
Sbjct: 206 RLEH 217
Score = 49.2 bits (101), Expect(4) = 9e-045
Identities = 21/31 (67%), Positives = 21/31 (67%)
Frame = -3 / -2
Query: 1094 NQETCMYIYINIKNNFWLRDLLDRQDYISSY 1002
NQET Y K FWLRDLLDRQ YISSY
Sbjct: 657 NQETYACTYT*YKEQFWLRDLLDRQAYISSY 565
Score = 46.9 bits (96), Expect(4) = 2e-050
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1 / +2
Query: 1003 YDDI*SCLSNKSLSQKLFFIFMYMYMHVS*F 1095
YDDI*+CLSNKSLSQ ++Y++ +VS*F
Sbjct: 566 YDDI*ACLSNKSLSQNCSLYYVYVHAYVS*F 658
Score = 43.2 bits (88), Expect(2) = 7e-031
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = -1 / -3
Query: 1093 IRRHACTYT*I*RTIFG*GTY*IDRIIYHHI 1001
IRRH + + FG*GTY*IDR+IYHHI
Sbjct: 656 IRRHMHVHIHNIKNSFG*GTY*IDRLIYHHI 564
Score = 40.9 bits (83), Expect(3) = 2e-031
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / +3
Query: 1004 MMIYNPVYLISPSAKNCSLYLCICTCMSPD 1093
MMIY PVYLISPSAK + + MSPD
Sbjct: 567 MMIYKPVYLISPSAKTVLYIMYMYMHMSPD 656
Score = 30.9 bits (61), Expect(3) = 2e-031
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3 / +1
Query: 492 RGRR***RSTTRAC 533
RGRR***RSTTRAC
Sbjct: 1 RGRR***RSTTRAC 42
Score = 24.9 bits (48), Expect(4) = 9e-045
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1 / -1
Query: 778 SFKLCIQHRAHVMEGRGNRAR 716
SF +C+QHRA RG R
Sbjct: 283 SFLICVQHRARPSW*RGTGGR 221
Score = 24.4 bits (47), Expect(4) = 2e-050
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2 / +2
Query: 710 HASRSVSPSFHHVRTVLYTQFKG 778
H + SPS RTVLYT KG
Sbjct: 215 HRPAAGSPSPRWPRTVLYTN*KG 283
Score = 23.1 bits (44), Expect(4) = 2e-050
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1 / +1
Query: 952 HA*THRDAVSNHCRS 996
H R VSNHCRS
Sbjct: 502 HLEIRRRLVSNHCRS 546
Score = 23.1 bits (44), Expect(4) = 9e-045
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -3
Query: 859 RRDDERTNELG 827
RR DER NELG
Sbjct: 332 RRRDERINELG 300
>gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 178 bits (384), Expect(2) = 3e-046
Identities = 67/78 (85%), Positives = 73/78 (93%)
Frame = +2 / +3
Query: 458 VSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMP 637
VSRHTIQVYPRSWTA+M+TFDNAGMWS+RSNIWER YLGEQ Y+SVISPE SLRDEYNMP
Sbjct: 3 VSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYISVISPEHSLRDEYNMP 182
Query: 638 ETSLRCGKVVGLPMPPSY 691
+ LRCGKVVGLP+PPSY
Sbjct: 183 DNDLRCGKVVGLPLPPSY 236
Score = 142 bits (305), Expect = 9e-033
Identities = 63/78 (80%), Positives = 66/78 (84%)
Frame = -2 / -2
Query: 690 *DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNV 511
*DGG GSPTTLPQRR +SGMLYSS S+ SGEMTL +CSPR SQMLDR LHMPALSNV
Sbjct: 235 *DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALSNV 56
Query: 510 IITAVHDLGYTWIVCRLT 457
I AVHDLGYTWIVCRLT
Sbjct: 55 SIIAVHDLGYTWIVCRLT 2
Score = 81.7 bits (172), Expect(2) = 4e-023
Identities = 37/58 (63%), Positives = 38/58 (65%)
Frame = +1 / +2
Query: 517 RQRGHVEHPVQHLGXXXXXXXXXXXXHLAGAVAQGRVQHAGD*PPLRQGRRTANAAVL 690
RQRGHVE PVQHLG HLAGA+A RVQHAG PPLRQGR A AAVL
Sbjct: 62 RQRGHVERPVQHLGALLPRGAVLHQRHLAGALAARRVQHAGQRPPLRQGRGAAAAAVL 235
Score = 48.3 bits (99), Expect(2) = 4e-023
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = +3 / +1
Query: 456 R*AGTRSRCTLGRGRR***RSTTRAC 533
R*AGTRSRCT G GRR *RSTTRAC
Sbjct: 1 R*AGTRSRCTRGHGRRLC*RSTTRAC 78
Score = 29.0 bits (57), Expect(2) = 3e-046
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3 / +1
Query: 672 CQCRRPTSPSRACTHLARFPLPSITC 749
C+CRRPT P T A P S +C
Sbjct: 217 CRCRRPTPPRAKMTKQAPGPSCSDSC 294
>gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 661
Score = 186 bits (400), Expect = 7e-046
Identities = 68/126 (53%), Positives = 92/126 (73%)
Frame = +2 / +3
Query: 293 NVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHT 472
+V+ A R ++E+VF+NPE + + HIDGYAF+ VGM G+WTPASR YNL D ++R+T
Sbjct: 66 SVMAANMRDYVEIVFQNPENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 245
Query: 473 IQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 652
+QVYP+SWTA+ M DN GMW++RS W RQYLG+Q Y+ V SP S RDE +P+ +L
Sbjct: 246 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 425
Query: 653 CGKVVG 670
CG+ G
Sbjct: 426 CGRASG 443
Score = 108 bits (230), Expect = 2e-022
Identities = 59/130 (45%), Positives = 72/130 (55%)
Frame = -2 / -1
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G + P PQ G+ +SS + +GE T +C PRYCL+Q+ D H+P LS+ +
Sbjct: 457 GLVRRPEARPQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM* 278
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVHD GYT V R S RLY R AGVH P +PT + A*PSM FSGF KT S
Sbjct: 277 IAVHD*GYTCNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSGF*KTIS 98
Query: 324 MKVRNSARMT 295
R A MT
Sbjct: 97 T*SRMLAAMT 68
>gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 674
Score = 182 bits (392), Expect = 9e-045
Identities = 67/126 (53%), Positives = 91/126 (72%)
Frame = +2 / +1
Query: 293 NVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHT 472
+V+ A R ++E+VF+N E + + HIDGYAF+ VGM G+WTPASR YNL D ++R+T
Sbjct: 37 SVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 216
Query: 473 IQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 652
+QVYP+SWTA+ M DN GMW++RS W RQYLG+Q Y+ V SP S RDE +P+ +L
Sbjct: 217 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 396
Query: 653 CGKVVG 670
CG+ G
Sbjct: 397 CGRASG 414
Score = 104 bits (221), Expect = 4e-021
Identities = 58/130 (44%), Positives = 71/130 (54%)
Frame = -2 / -1
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G + P PQ G+ +SS + +GE T +C PRYCL+Q+ D H+P LS+ +
Sbjct: 428 GLVRRPEARPQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM* 249
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVHD GYT V R S RLY R AGVH P +PT + A*PSM FS F KT S
Sbjct: 248 IAVHD*GYTCNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSVF*KTIS 69
Query: 324 MKVRNSARMT 295
R A MT
Sbjct: 68 T*SRMLAAMT 39
>gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 646
Score = 182 bits (392), Expect = 9e-045
Identities = 67/126 (53%), Positives = 91/126 (72%)
Frame = +2 / +3
Query: 293 NVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHT 472
+V+ A R ++E+VF+N E + + HIDGYAF+ VGM G+WTPASR YNL D ++R+T
Sbjct: 9 SVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 188
Query: 473 IQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 652
+QVYP+SWTA+ M DN GMW++RS W RQYLG+Q Y+ V SP S RDE +P+ +L
Sbjct: 189 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 368
Query: 653 CGKVVG 670
CG+ G
Sbjct: 369 CGRASG 386
Score = 104 bits (221), Expect = 4e-021
Identities = 58/130 (44%), Positives = 71/130 (54%)
Frame = -2 / -1
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G + P PQ G+ +SS + +GE T +C PRYCL+Q+ D H+P LS+ +
Sbjct: 400 GLVRRPEARPQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM* 221
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVHD GYT V R S RLY R AGVH P +PT + A*PSM FS F KT S
Sbjct: 220 IAVHD*GYTCNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSVF*KTIS 41
Query: 324 MKVRNSARMT 295
R A MT
Sbjct: 40 T*SRMLAAMT 11
>gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_H07_A002 3', mRNA sequence
Length = 742
Score = 182 bits (392), Expect = 9e-045
Identities = 67/126 (53%), Positives = 91/126 (72%)
Frame = +2 / +1
Query: 293 NVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHT 472
+V+ A R ++E+VF+N E + + HIDGYAF+ VGM G+WTPASR YNL D ++R+T
Sbjct: 82 SVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 261
Query: 473 IQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 652
+QVYP+SWTA+ M DN GMW++RS W RQYLG+Q Y+ V SP S RDE +P+ +L
Sbjct: 262 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 441
Query: 653 CGKVVG 670
CG+ G
Sbjct: 442 CGRASG 459
Score = 104 bits (221), Expect = 4e-021
Identities = 58/130 (44%), Positives = 71/130 (54%)
Frame = -2 / -3
Query: 684 GGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNVII 505
G + P PQ G+ +SS + +GE T +C PRYCL+Q+ D H+P LS+ +
Sbjct: 473 GLVRRPEARPQSSAFLGIGFSSRHEFAGE*TRR*NCWPRYCLAQLSDLTFHIPTLSSGM* 294
Query: 504 TAVHDLGYTWIVCRLTVSRRLYVLRDAGVHLPGPMPTAKKA*PSMWMVSMLFSGFSKTTS 325
AVHD GYT V R S RLY R AGVH P +PT + A*PSM FS F KT S
Sbjct: 293 IAVHD*GYTCNVYRAMASLRLYP*RLAGVHCPPSIPTTQNA*PSMCHDCTKFSVF*KTIS 114
Query: 324 MKVRNSARMT 295
R A MT
Sbjct: 113 T*SRMLAAMT 84
>gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_G11_A002 3', mRNA sequence
Length = 725
Score = 181 bits (390), Expect = 2e-044
Identities = 64/127 (50%), Positives = 91/127 (71%)
Frame = +2 / +3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTI 475
V+R F+EVVF+N E + H+DGY F+ VG G G+W R TYNL+D +RHT+
Sbjct: 36 VLRLGLHEFVEVVFQNTESELQAWHLDGYDFWVVGYGDGQWNETQRQTYNLVDAQARHTV 215
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYP W+A++++ DN GMW++RS IW+RQYLG+QLY+ V +P++S +EY +P ++ C
Sbjct: 216 QVYPNGWSAILVSLDNQGMWNLRSAIWDRQYLGQQLYLRVWTPQQSFSNEYAIPTDAILC 395
Query: 656 GKVVGLP 676
GK VGLP
Sbjct: 396 GKAVGLP 416
>gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 558
Score = 171 bits (369), Expect(3) = 2e-044
Identities = 69/75 (92%), Positives = 72/75 (96%)
Frame = +2 / -1
Query: 485 PRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKV 664
PRSWTAVMMTFDNAGMWSIRSNIWER LGEQLY+SV SPERSLRDEYNMPETSLRCGKV
Sbjct: 501 PRSWTAVMMTFDNAGMWSIRSNIWERNSLGEQLYISVTSPERSLRDEYNMPETSLRCGKV 322
Query: 665 VGLPMPPSYLSV*SM 709
VGLP+PPSYLSV*S+
Sbjct: 321 VGLPLPPSYLSV*SI 277
Score = 150 bits (322), Expect(4) = 6e-040
Identities = 66/75 (88%), Positives = 68/75 (90%)
Frame = -2 / +2
Query: 708 ML*TER*DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHM 529
ML TER DGG G PTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQMLDR+LHM
Sbjct: 278 MLXTERXDGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPREFLSQMLDRILHM 457
Query: 528 PALSNVIITAVHDLG 484
PALSNVIITAVHDLG
Sbjct: 458 PALSNVIITAVHDLG 502
Score = 107 bits (229), Expect = 3e-022
Identities = 47/60 (78%), Positives = 49/60 (81%)
Frame = -1 / +1
Query: 718 RCVHALDGEVGRRHWQSDDLAAAEASLRHVVLVPERPLRRDDAHVQLLAEVLPLPDVGPD 539
R AL GEV RR WQ+DDLAAAEA L HVVLVPERPLRR DA VQLLAE +PLPDVGPD
Sbjct: 268 RPADALXGEVXRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEGIPLPDVGPD 447
Score = 103 bits (220), Expect(3) = 7e-027
Identities = 45/64 (70%), Positives = 46/64 (71%)
Frame = +1 / -3
Query: 517 RQRGHVEHPVQHLGXXXXXXXXXXXXHLAGAVAQGRVQHAGD*PPLRQGRRTANAAVLPL 696
RQRGHVE+PVQHLG HLAGAVAQGRVQHA D PPLRQGRR A AAV PL
Sbjct: 469 RQRGHVEYPVQHLGEEFPRRAAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVXPL 290
Query: 697 RLEH 708
R EH
Sbjct: 289 RXEH 278
Score = 33.6 bits (67), Expect(3) = 7e-027
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3 / -2
Query: 489 GRGRR***RSTTRAC 533
GRGRR***RSTTRAC
Sbjct: 497 GRGRR***RSTTRAC 453
Score = 24.9 bits (48), Expect(4) = 6e-040
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1 / +2
Query: 778 SFKLCIQHRAHVMEGRGNRAR 716
SF +C+QHRA RG R
Sbjct: 212 SFLICVQHRARPSW*RGTGGR 274
Score = 24.4 bits (47), Expect(3) = 2e-044
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2 / -3
Query: 710 HASRSVSPSFHHVRTVLYTQFKG 778
H + SPS RTVLYT KG
Sbjct: 280 HRPAAGSPSPRWPRTVLYTN*KG 212
Score = 24.0 bits (46), Expect(4) = 6e-040
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +3
Query: 486 GYTWIVCR 463
GYTW VCR
Sbjct: 501 GYTWTVCR 524
Score = 23.5 bits (45), Expect(3) = 2e-044
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +2 / -3
Query: 461 SRHTIQVYP 487
+RHT+QVYP
Sbjct: 526 ARHTVQVYP 500
Score = 23.1 bits (44), Expect(3) = 7e-027
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / -2
Query: 727 FPFLPSRAHGAVYTI 771
FPF AHGAV+ +
Sbjct: 263 FPFTTMAAHGAVHKL 219
Score = 23.1 bits (44), Expect(4) = 6e-040
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / +1
Query: 859 RRDDERTNELG 827
RR DER NELG
Sbjct: 163 RRRDERINELG 195
>gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 3', mRNA sequence
Length = 564
Score = 166 bits (358), Expect(2) = 1e-042
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = +2 / +1
Query: 473 IQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 652
IQVYPRSWTA+M+TFDNAGMWS+RSNIWER YLGEQ Y+SVISPE SLRDEYNMP+ LR
Sbjct: 1 IQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYISVISPEHSLRDEYNMPDNDLR 180
Query: 653 CGKVVGLPMPPSY 691
CGKVVGLP+PPSY
Sbjct: 181 CGKVVGLPLPPSY 219
Score = 128 bits (274), Expect = 2e-028
Identities = 57/72 (79%), Positives = 60/72 (83%)
Frame = -2 / -2
Query: 690 *DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLDRMLHMPALSNV 511
*DGG GSPTTLPQRR +SGMLYSS S+ SGEMTL +CSPR SQMLDR LHMPALSNV
Sbjct: 218 *DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALSNV 39
Query: 510 IITAVHDLGYTW 475
I AVHDLGYTW
Sbjct: 38 SIIAVHDLGYTW 3
Score = 29.0 bits (57), Expect(2) = 1e-042
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3 / +2
Query: 672 CQCRRPTSPSRACTHLARFPLPSITC 749
C+CRRPT P T A P S +C
Sbjct: 200 CRCRRPTPPRAKMTKQAPGPSCSDSC 277
>gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 175 bits (376), Expect = 1e-042
Identities = 64/116 (55%), Positives = 85/116 (73%)
Frame = +2 / +1
Query: 323 IEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTA 502
+E+VF+N E + + HIDGYAF+ VGM G+WTPASR YNL D ++R+T+QVYP+SWTA
Sbjct: 1 VEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTA 180
Query: 503 VMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVG 670
+ M DN GMW++RS W RQYLG+Q Y+ V SP S RDE +P+ +L CG+ G
Sbjct: 181 IYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRASG 348
>gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_A12_A002 3', mRNA sequence
Length = 623
Score = 165 bits (355), Expect = 1e-039
Identities = 61/111 (54%), Positives = 80/111 (72%)
Frame = +2 / +3
Query: 338 ENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTF 517
+N E + + HIDGYAF+ VGM G+WTPASR YNL D ++R+T+QVYP+SWTA+ M
Sbjct: 3 QNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTAIYMPL 182
Query: 518 DNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVG 670
DN GMW++RS W RQYLG+Q Y+ V SP S RDE +P+ +L CG+ G
Sbjct: 183 DNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRASG 335
>gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 108 bits (231), Expect(5) = 1e-031
Identities = 44/48 (91%), Positives = 47/48 (97%)
Frame = +2 / +2
Query: 566 YLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYLSV*SM 709
YLGEQLY+SV SPERSLRDEYNMPETSLRCGKVVGLP+PPSYLSV*S+
Sbjct: 2 YLGEQLYISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSYLSV*SI 145
Score = 99.6 bits (211), Expect(5) = 3e-030
Identities = 43/47 (91%), Positives = 44/47 (93%)
Frame = -2 / -2
Query: 708 ML*TER*DGGIGSPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPR 568
ML*TER*DGG G PTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR
Sbjct: 144 ML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR 4
Score = 95.0 bits (201), Expect(2) = 2e-023
Identities = 42/51 (82%), Positives = 43/51 (84%)
Frame = -1 / -1
Query: 718 RCVHALDGEVGRRHWQSDDLAAAEASLRHVVLVPERPLRRDDAHVQLLAEV 566
R ALDGEVGRR WQ+DDLAAAEA L HVVLVPERPLRR DA VQLLAEV
Sbjct: 154 RPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEV 2
Score = 40.0 bits (81), Expect(5) = 3e-030
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -1 / -1
Query: 1057 RTIFG*GTY*IDRIIYHHI 1001
+ IFG*GTY IDR+IYHHI
Sbjct: 547 KNIFG*GTYYIDRLIYHHI 491
Score = 38.6 bits (78), Expect(2) = 2e-023
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -3 / -3
Query: 1070 YINIKNNFWLRDLLDRQDYISSY 1002
Y K +FWLRDLL RQ YISSY
Sbjct: 560 YT*YKEHFWLRDLLYRQAYISSY 492
Score = 37.3 bits (75), Expect(5) = 1e-031
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2 / +2
Query: 1004 MMIYNPVYLISPSAKN 1051
MMIY PVY+ISPSAKN
Sbjct: 494 MMIYKPVYIISPSAKN 541
Score = 24.9 bits (48), Expect(5) = 3e-030
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1 / -2
Query: 778 SFKLCIQHRAHVMEGRGNRAR 716
SF +C+QHRA RG R
Sbjct: 210 SFLICVQHRARPSW*RGTGGR 148
Score = 24.4 bits (47), Expect(5) = 1e-031
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2 / +1
Query: 710 HASRSVSPSFHHVRTVLYTQFKG 778
H + SPS RTVLYT KG
Sbjct: 142 HRPAAGSPSPRWPRTVLYTN*KG 210
Score = 23.1 bits (44), Expect(5) = 1e-031
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1 / +3
Query: 952 HA*THRDAVSNHCRS 996
H R VSNHCRS
Sbjct: 429 HLEIRRRLVSNHCRS 473
Score = 23.1 bits (44), Expect(5) = 3e-030
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / -1
Query: 859 RRDDERTNELG 827
RR DER NELG
Sbjct: 259 RRRDERINELG 227
Score = 23.1 bits (44), Expect(5) = 3e-030
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 1083 MHVHIHKYKEQF 1048
MHVHIH K F
Sbjct: 571 MHVHIHNIKNIF 536
Score = 22.1 bits (42), Expect(5) = 1e-031
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1 / +2
Query: 1036 SLSQKLFFIFMYMYMHV 1086
S S K MYMYMH+
Sbjct: 524 SPSAKNVLYIMYMYMHM 574
>gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B07_A002 3', mRNA sequence
Length = 523
Score = 136 bits (292), Expect = 6e-031
Identities = 50/89 (56%), Positives = 65/89 (73%)
Frame = +2 / +1
Query: 395 VGMGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLG 574
VGM G W+ SR YNL+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG
Sbjct: 1 VGMDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLG 180
Query: 575 EQLYVSVISPERSLRDEYNMPETSLRCGK 661
+Q Y+ V +P RS RDE MP+ +L CG+
Sbjct: 181 QQFYLRVYTPSRSFRDELPMPDNALLCGR 267
>gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232344, DNA
sequence
Length = 649
Score = 132 bits (282), Expect = 1e-029
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2 / +2
Query: 401 MGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQ 580
M G W+ SR YNL+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+Q
Sbjct: 44 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 223
Query: 581 LYVSVISPERSLRDEYNMPETSLRCGK 661
Y+ V +P RS RDE MP+ +L CG+
Sbjct: 224 FYLRVYTPSRSFRDELPMPDNALLCGR 304
>gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 645
Score = 132 bits (282), Expect = 1e-029
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2 / -2
Query: 401 MGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQ 580
M G W+ SR YNL+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+Q
Sbjct: 518 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 339
Query: 581 LYVSVISPERSLRDEYNMPETSLRCGK 661
Y+ V +P RS RDE MP+ +L CG+
Sbjct: 338 FYLRVYTPSRSFRDELPMPDNALLCGR 258
>gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228i05, DNA
sequence
Length = 620
Score = 132 bits (282), Expect = 1e-029
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2 / -1
Query: 401 MGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQ 580
M G W+ SR YNL+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+Q
Sbjct: 479 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 300
Query: 581 LYVSVISPERSLRDEYNMPETSLRCGK 661
Y+ V +P RS RDE MP+ +L CG+
Sbjct: 299 FYLRVYTPSRSFRDELPMPDNALLCGR 219
>gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_E06_A002 3', mRNA sequence
Length = 521
Score = 132 bits (282), Expect = 1e-029
Identities = 48/88 (54%), Positives = 63/88 (71%)
Frame = +2 / +2
Query: 398 GMGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGE 577
GM G W+ SR Y L+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+
Sbjct: 2 GMDVGTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQ 181
Query: 578 QLYVSVISPERSLRDEYNMPETSLRCGK 661
Q Y+ V +P RS RDE MP+ +L CG+
Sbjct: 182 QFYLRVYTPSRSFRDELPMPDNALLCGR 265
>gb|CW297869.1|CW297869 104_780_11462273_116_35646_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462273, DNA
sequence
Length = 604
Score = 61.6 bits (128), Expect(4) = 6e-029
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +2 / -1
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKL 112
NQ RS RWNL+A AARPNPQGS+ Y IN+T+ L
Sbjct: 574 NQARSVRWNLSAGAARPNPQGSFRYSSINVTQAYLL 467
Score = 53.3 bits (110), Expect(4) = 6e-029
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2 / -1
Query: 260 PSNTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVG 400
P N ++A +VI +R F+E++F+N + + + H+DGYAFF VG
Sbjct: 325 PLNKGAPRIARSVINGTYRGFMELIFQNNDTRMQSYHMDGYAFFVVG 185
Score = 37.7 bits (76), Expect(4) = 6e-029
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2 / -1
Query: 131 VDGKERFAFNGVSHVDPETPVKLAEYF 211
+DG+ R NG+S+ PETP++LA+ +
Sbjct: 445 IDGRRRATLNGLSYAPPETPLRLADAY 365
Score = 32.2 bits (64), Expect(4) = 6e-029
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2 / -2
Query: 401 MGPGKWTPASRSTYNLLDTVSRHTI 475
M G+WT SR TYN D V+R TI
Sbjct: 75 MDYGEWTEDSRGTYNKGDGVARSTI 1
>gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 129 bits (277), Expect = 7e-029
Identities = 48/110 (43%), Positives = 74/110 (67%)
Frame = +2 / +1
Query: 275 PTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLD 454
P + +VI + ++ F+E+VF+N + ++ T HIDGYAF+ VGM G+WT R TYN D
Sbjct: 10 PPVIRTSVINSTYKNFLEIVFQNNDTTVQTYHIDGYAFWVVGMDYGEWTENIRGTYNKWD 189
Query: 455 TVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISP 604
VSR T QV+P +WTAVM++ D+ G W++R+ + YLG++ + V+ P
Sbjct: 190 GVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETSIRVVDP 339
>gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_D05_A002 3', mRNA sequence
Length = 524
Score = 128 bits (274), Expect = 2e-028
Identities = 47/88 (53%), Positives = 62/88 (70%)
Frame = +2 / +2
Query: 398 GMGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGE 577
GM W+ SR Y L+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+
Sbjct: 2 GMDVRTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQ 181
Query: 578 QLYVSVISPERSLRDEYNMPETSLRCGK 661
Q Y+ V +P RS RDE MP+ +L CG+
Sbjct: 182 QFYLRVYTPSRSFRDELPMPDNALLCGR 265
>gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 618
Score = 105 bits (224), Expect(2) = 5e-028
Identities = 43/68 (63%), Positives = 51/68 (75%)
Frame = +2 / +2
Query: 17 SFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVK 196
S R NLTAS RPNPQGSYHYG IN+TRTI+LA V GK R+A NGVS + +TP+K
Sbjct: 56 SSRTNLTASGPRPNPQGSYHYGSINVTRTIRLASSAVLVGGKRRYAVNGVSFAEADTPLK 235
Query: 197 LAEYFNAS 220
LA+Y+N S
Sbjct: 236 LADYYNIS 259
Score = 43.7 bits (89), Expect(2) = 5e-028
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2 / +2
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVG 400
V+ ++ R+F+EVV EN E S+ + H+DGY+ F G
Sbjct: 410 VMDSDHRSFVEVVLENGEDSVQSWHLDGYSVFVGG 514
>gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B11_A002 3', mRNA sequence
Length = 523
Score = 122 bits (260), Expect = 1e-026
Identities = 45/87 (51%), Positives = 60/87 (68%)
Frame = +2 / +3
Query: 401 MGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQ 580
M G W+ SR Y L+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+Q
Sbjct: 3 MDVGTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 182
Query: 581 LYVSVISPERSLRDEYNMPETSLRCGK 661
Y+ V +P RS RDE MP+ + G+
Sbjct: 183 FYLRVYTPSRSFRDELPMPDNAFFWGR 263
>gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033k13, DNA
sequence
Length = 568
Score = 75.3 bits (158), Expect(3) = 2e-026
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = +2 / -3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKER 148
NQ RSFRWNLTASAARPNPQGS+HYG I +RT+ LA G R
Sbjct: 425 NQARSFRWNLTASAARPNPQGSFHYGAIPTSRTLVLASSSSAPAGGRR 282
Score = 44.1 bits (90), Expect(3) = 2e-026
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2 / -3
Query: 296 VIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVG 400
V+R F+EVVF+N E + H+DGY F+ VG
Sbjct: 125 VLRLGLHEFVEVVFQNTESELQAWHLDGYDFWVVG 21
Score = 39.6 bits (80), Expect(3) = 2e-026
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +2 / -3
Query: 137 GKERFAFNGVSHVDPETPVKLAEYFNASD 223
G+ + A NGVS V P+TP+KLA+ +N +D
Sbjct: 290 GRRQCAVNGVSFVVPDTPLKLADNYNIAD 204
>gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 501
Score = 120 bits (256), Expect = 5e-026
Identities = 44/81 (54%), Positives = 58/81 (71%)
Frame = +2 / +1
Query: 428 SRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPE 607
SR YNL D ++R+T+QVYP+SWTA+ M DN GMW++RS W RQYLG+Q Y+ V SP
Sbjct: 1 SRQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPA 180
Query: 608 RSLRDEYNMPETSLRCGKVVG 670
S RDE +P+ +L CG+ G
Sbjct: 181 NSWRDENPIPKNALLCGRASG 243
>gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 505
Score = 120 bits (256), Expect = 5e-026
Identities = 44/81 (54%), Positives = 58/81 (71%)
Frame = +2 / +3
Query: 428 SRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPE 607
SR YNL D ++R+T+QVYP+SWTA+ M DN GMW++RS W RQYLG+Q Y+ V SP
Sbjct: 3 SRQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPA 182
Query: 608 RSLRDEYNMPETSLRCGKVVG 670
S RDE +P+ +L CG+ G
Sbjct: 183 NSWRDENPIPKNALLCGRASG 245
>gb|CW343076.1|CW343076 104_845_11487223_116_36181_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487223, DNA
sequence
Length = 697
Score = 60.6 bits (126), Expect(3) = 6e-026
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = +2 / +1
Query: 80 GQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPETPVKLAEYF 211
G + +TRTI+LA V+GK+R+A N VS+V P+TP+K+A+Y+
Sbjct: 1 GLVPVTRTIRLANSAAAVNGKQRYAVNSVSYVSPDTPLKVADYY 132
Score = 51.0 bits (105), Expect(3) = 6e-026
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2 / +1
Query: 293 NVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFFAVG 400
+V+ A +R ++E+VFEN E + + HIDGYAF+ VG
Sbjct: 205 SVMGANYRDYVEIVFENNEDEVQSWHIDGYAFWVVG 312
Score = 45.5 bits (93), Expect(3) = 6e-026
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +2 / +2
Query: 389 FAVGMGPGKWTPASRSTYNLLDTVSRHTIQV 481
FA M GKW+ ASR YNL D VSR+T+QV
Sbjct: 404 FACRMDGGKWSSASRQGYNLRDGVSRYTVQV 496
>gb|CW358545.1|CW358545 fsbb001f025l20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f025l20, DNA
sequence
Length = 616
Score = 118 bits (253), Expect = 1e-025
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTAS RPNPQGSYHYG + +TRTI+LA V+GK+R+A N VS+V P+
Sbjct: 357 NQARSIRWNLTASGPRPNPQGSYHYGLVPVTRTIRLANSAAAVNGKQRYAVNSVSYVSPD 536
Query: 185 TPVKLAEYFNASDGVFK 235
TP+K+A+Y+ G+ +
Sbjct: 537 TPLKVADYYKIGGGLLR 587
>gb|CX607178.1|CX607178 ANR1_7_D05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_D05_A002 3', mRNA sequence
Length = 794
Score = 116 bits (247), Expect = 9e-025
Identities = 43/88 (48%), Positives = 61/88 (69%)
Frame = +2 / +1
Query: 341 NPEKSIDTIHIDGYAFFAVGMGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFD 520
N + ++ T HIDGYAF+ VGM G+WT SR TYN D VSR T QV+P +WTAVM++ D
Sbjct: 1 NNDTTVQTYHIDGYAFWVVGMDYGEWTENSRGTYNKWDGVSRCTTQVFPGAWTAVMLSLD 180
Query: 521 NAGMWSIRSNIWERQYLGEQLYVSVISP 604
+ G W++R+ + YLG++ Y+ V+ P
Sbjct: 181 SPGFWNVRTENLDTWYLGQETYIRVVDP 264
>gb|CN143330.1|CN143330 WOUND1_15_C09.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_15_C09_A002 5', mRNA sequence
Length = 749
Score = 61.1 bits (127), Expect(3) = 2e-023
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKL 112
NQ RS R N++ AARPNPQGS+HYG IN+++ KL
Sbjct: 375 NQARSIRMNVSTGAARPNPQGSFHYGSINVSQVYKL 482
Score = 48.3 bits (99), Expect(3) = 2e-023
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +2 / +3
Query: 275 PTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAF 388
P + +VI + ++ F+E+VF+N + ++ T HIDGYAF
Sbjct: 636 PPVIRTSVINSTYKNFLEIVFQNNDTTVQTYHIDGYAF 749
Score = 39.1 bits (79), Expect(3) = 2e-023
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +2 / +3
Query: 131 VDGKERFAFNGVSHVDPETPVKLAEYFNASD 223
+DGK+R +G+S+ P+TP++LA+ ++ D
Sbjct: 504 IDGKKRTTLSGISYSPPDTPLRLADLYDKKD 596
>gb|CW298477.1|CW298477 104_781_11462600_148_35655_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462600, DNA
sequence
Length = 697
Score = 61.6 bits (128), Expect(3) = 3e-023
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +2 / -1
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKL 112
NQ RS RWNL+A AARPNPQGS+ Y IN+T+ L
Sbjct: 382 NQARSVRWNLSAGAARPNPQGSFRYSSINVTQAYLL 275
Score = 48.7 bits (100), Expect(3) = 3e-023
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +2 / -1
Query: 260 PSNTAPTKMAPNVIRAEFRTFIEVVFENPEKSIDTIHIDGYAFF 391
P N ++A +VI +R F+E++F+N + + + H+DGYAFF
Sbjct: 133 PLNKGAPRIARSVINGTYRGFMELIFQNNDTRMQSYHMDGYAFF 2
Score = 37.7 bits (76), Expect(3) = 3e-023
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2 / -1
Query: 131 VDGKERFAFNGVSHVDPETPVKLAEYF 211
+DG+ R NG+S+ PETP++LA+ +
Sbjct: 253 IDGRRRATLNGLSYAPPETPLRLADAY 173
>gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 110 bits (234), Expect = 6e-023
Identities = 39/73 (53%), Positives = 53/73 (72%)
Frame = +2 / +1
Query: 452 DTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYN 631
D ++R+T+QVYP+SWTA+ M DN GMW++RS W RQYLG+Q Y+ V SP S RDE
Sbjct: 1 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 180
Query: 632 MPETSLRCGKVVG 670
+P+ +L CG+ G
Sbjct: 181 IPKNALLCGRASG 219
>gb|CW227956.1|CW227956 104_667_11206095_116_37239_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206095, DNA
sequence
Length = 645
Score = 93.6 bits (198), Expect(2) = 3e-022
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +2 / +2
Query: 401 MGPGKWTPASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQ 580
M G+WT SR TYN D V+R TIQVYP +W AV+++ DN G+W++RS + YLG++
Sbjct: 176 MDYGEWTEDSRGTYNKGDGVARSTIQVYPGAWAAVLVSLDNVGVWNVRSENLDSWYLGQE 355
Query: 581 LYVSVISPE 607
+YV V++PE
Sbjct: 356 VYVRVVNPE 382
Score = 33.6 bits (67), Expect(2) = 3e-022
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2 / +1
Query: 335 FENPEKSIDTIHIDGYAFFAVG 400
F+N + + + H+DGYAFF VG
Sbjct: 1 FQNNDTRMQSYHMDGYAFFVVG 66
>gb|BF420999.1|BF420999 FM1_5_A06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 444
Score = 106 bits (227), Expect = 5e-022
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTAS RPNPQGSYHYG +N TRTI LA R ++GK R+A N +S + +
Sbjct: 236 NQARSIRWNLTASGPRPNPQGSYHYGLVNTTRTIILANSRATINGKLRYAVNSISFIPAD 415
Query: 185 TPVKLAEYF 211
TP+K+A+++
Sbjct: 416 TPLKVADFY 442
>gb|BF586175.1|BF586175 FM1_26_F08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 545
Score = 106 bits (227), Expect = 5e-022
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTAS RPNPQGSYHYG +N TRTI LA R ++GK R+A N +S + +
Sbjct: 236 NQARSIRWNLTASGPRPNPQGSYHYGLVNTTRTIILANSRATINGKLRYAVNSISFIPAD 415
Query: 185 TPVKLAEYF 211
TP+K+A+++
Sbjct: 416 TPLKVADFY 442
>gb|BG240385.1|BG240385 OV1_29_D04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 441
Score = 106 bits (227), Expect = 5e-022
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +2 / +2
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS RWNLTAS RPNPQGSYHYG +N TRTI LA R ++GK R+A N +S + +
Sbjct: 125 NQARSIRWNLTASGPRPNPQGSYHYGLVNTTRTIILANSRATINGKLRYAVNSISFIPAD 304
Query: 185 TPVKLAEYF 211
TP+K+A+++
Sbjct: 305 TPLKVADFY 331
>gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_F06_A002 5', mRNA sequence
Length = 630
Score = 106 bits (227), Expect = 5e-022
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = +2 / +3
Query: 5 NQCRSFRWNLTASAARPNPQGSYHYGQINITRTIKLAMGRGKVDGKERFAFNGVSHVDPE 184
NQ RS NLTAS RPNPQGSYHYG IN+TRTI+LA V GK R+A NGVS + +
Sbjct: 423 NQARSIXTNLTASGPRPNPQGSYHYGSINVTRTIRLASSAVLVGGKRRYAVNGVSFAEAD 602
Query: 185 TPVKLAEYF 211
TP+KLA+Y+
Sbjct: 603 TPLKLADYY 629
>gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164251, DNA
sequence
Length = 687
Score = 105 bits (225), Expect = 1e-021
Identities = 38/65 (58%), Positives = 48/65 (73%)
Frame = +2 / -3
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYPRSWTA+ M DN GMW++RS W RQYLG+Q Y+ V +P SLRDEY +P+ +L C
Sbjct: 247 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 68
Query: 656 GKVVG 670
G+ G
Sbjct: 67 GRAAG 53
>gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174347, DNA
sequence
Length = 688
Score = 105 bits (225), Expect = 1e-021
Identities = 38/65 (58%), Positives = 48/65 (73%)
Frame = +2 / +3
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYPRSWTA+ M DN GMW++RS W RQYLG+Q Y+ V +P SLRDEY +P+ +L C
Sbjct: 183 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 362
Query: 656 GKVVG 670
G+ G
Sbjct: 363 GRAAG 377
>gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195330, DNA
sequence
Length = 706
Score = 105 bits (225), Expect = 1e-021
Identities = 38/65 (58%), Positives = 48/65 (73%)
Frame = +2 / -1
Query: 476 QVYPRSWTAVMMTFDNAGMWSIRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 655
QVYPRSWTA+ M DN GMW++RS W RQYLG+Q Y+ V +P SLRDEY +P+ +L C
Sbjct: 472 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 293
Query: 656 GKVVG 670
G+ G
Sbjct: 292 GRAAG 278
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,217,636,905
Number of Sequences: 832831
Number of extensions: 18582812
Number of successful extensions: 208216
Number of sequences better than 1.0e-020: 54
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 40349451042
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)