TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.2
(910 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorgh... 239 7e-076
gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum met... 207 5e-065
gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorgh... 227 4e-061
gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum b... 183 4e-054
gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sor... 204 1e-051
gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum b... 167 1e-050
gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation... 170 5e-046
gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sor... 180 2e-044
gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum b... 168 9e-041
gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum b... 165 1e-039
gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Me... 163 3e-039
gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Mer... 160 4e-038
gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Me... 160 4e-038
gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkal... 160 4e-038
gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots ... 158 1e-037
gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum b... 155 8e-037
gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) So... 151 1e-035
gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots S... 147 3e-034
gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) So... 107 5e-033
gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum b... 137 3e-031
gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorgh... 132 7e-030
gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation... 132 7e-030
gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation... 132 7e-030
gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum b... 132 7e-030
gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bi... 128 9e-029
gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum b... 122 8e-027
gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Me... 120 3e-026
gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2... 120 3e-026
gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation... 105 1e-024
gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sor... 110 3e-023
gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sor... 108 1e-022
gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorgh... 106 5e-022
gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorgh... 106 5e-022
gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorgh... 106 5e-022
>gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 600
Score = 239 bits (516), Expect(3) = 7e-076
Identities = 95/114 (83%), Positives = 102/114 (89%)
Frame = -1 / +1
Query: 679 AVGMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYL 500
A MGPGKWT A RSTYNLLDTVSRHT+QVYPRSWTAVMMTFDNAGMWS+RSNIWER YL
Sbjct: 205 ACSMGPGKWTPACRSTYNLLDTVSRHTVQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYL 384
Query: 499 GEQLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYRAV*SVDRSRTVLY 338
GEQLY+SV SPERSLRDEYNMPETSLRCGKVVGLP+PPSY +V*S+ R L+
Sbjct: 385 GEQLYISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSYLSV*SIGRPPVPLH 546
Score = 212 bits (457), Expect(2) = 2e-063
Identities = 92/105 (87%), Positives = 94/105 (89%)
Frame = +3 / -2
Query: 357 RSTL*TAR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTL 536
R L*T R*DGG GRPTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQML+R L
Sbjct: 527 RPML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRIL 348
Query: 537 HMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPM 671
HMPALSNVIITAVHDLGYTW VCRLTVSRRLYVLR A VHLPGPM
Sbjct: 347 HMPALSNVIITAVHDLGYTWTVCRLTVSRRLYVLRHAGVHLPGPM 213
Score = 109 bits (233), Expect(3) = 5e-041
Identities = 50/65 (76%), Positives = 52/65 (80%)
Frame = +2 / -1
Query: 338 VQHRARSIDALDGAVGRWHRQADDLAAAEAGLRHVVLVPERPLRRDDAHVQLLAEVLPLP 517
V+ R DALDG VGR QADDLAAAEAGL HVVLVPERPLRR DA VQLLAEV+PLP
Sbjct: 546 VKGNRRPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLP 367
Query: 518 DVGAD 532
DVG D
Sbjct: 366 DVGPD 352
Score = 97.3 bits (206), Expect(3) = 3e-046
Identities = 41/46 (89%), Positives = 43/46 (93%)
Frame = -2 / +2
Query: 675 SAWGPANGRQRRGVRTTSWTR*AGTRSRCTQGRGRR***RSTTRAC 538
+AW ANGRQR GVRTTSWTR*AGTRSRCT+GRGRR***RSTTRAC
Sbjct: 209 AAWARANGRQRAGVRTTSWTR*AGTRSRCTRGRGRR***RSTTRAC 346
Score = 92.3 bits (195), Expect(3) = 3e-046
Identities = 42/62 (67%), Positives = 43/62 (69%)
Frame = -3 / +3
Query: 536 ERPLQHLGXXXXXXXXXXXRHLAGAVAQGRVQHAGDQPPLRQGRRPADATVLPRRLERRS 357
E P+QHLG RHLAGAVAQGRVQHA DQPPLRQGRRPA A VLP RLE R
Sbjct: 348 EYPVQHLGEELPRRAAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVLPLRLEHRP 527
Query: 356 IA 351
A
Sbjct: 528 AA 533
Score = 60.2 bits (125), Expect(3) = 7e-076
Identities = 26/38 (68%), Positives = 27/38 (71%)
Frame = -1 / +2
Query: 784 APNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVG 671
APNV+ AEFR FI V FENPEKSI I AFFAVG
Sbjct: 2 APNVLRAEFRTFIEVVFENPEKSIDTFHIDGYAFFAVG 115
Score = 55.6 bits (115), Expect(3) = 5e-041
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = +2 / -1
Query: 593 LDRVPAHRVQEVVRTPRRCRPFAGPHA 673
LDRVPAHRVQEVVRTP R RPFA HA
Sbjct: 291 LDRVPAHRVQEVVRTPARWRPFARAHA 211
Score = 52.4 bits (108), Expect(2) = 2e-063
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +2 / -3
Query: 674 DGEKGXXXDXDXXDALLGVLEXHXDEXXELGADDVG 781
DGE+ D + DALLGVLE H DE ELGA+DVG
Sbjct: 112 DGEECVAVDVEGVDALLGVLEHHLDEGAELGAEDVG 5
Score = 42.8 bits (87), Expect(3) = 5e-041
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = +3 / -1
Query: 672 PTAKKAXXXXXXXXXLFSGFSKXTXMNXRNSALMTLGA 785
PTAK A LFSGFS T M RNSA TLGA
Sbjct: 114 PTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSARRTLGA 1
Score = 35.9 bits (72), Expect(3) = 3e-046
Identities = 17/36 (47%), Positives = 17/36 (47%)
Frame = -2 / +3
Query: 780 PTXXXXXXXXXSXWXSRTPRRASXXSXSXXXPFSPS 673
PT S W SRTPRRAS S S SPS
Sbjct: 6 PTSSAPSSAPSSRWCSRTPRRASTPSTSTATHSSPS 113
Score = 25.8 bits (50), Expect(3) = 7e-076
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / +1
Query: 354 RARCCTQLKE 325
RARCCTQ+K+
Sbjct: 556 RARCCTQIKK 585
>gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526807, DNA
sequence
Length = 622
Score = 207 bits (447), Expect(2) = 5e-065
Identities = 80/99 (80%), Positives = 88/99 (88%)
Frame = -1 / -3
Query: 670 MGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQ 491
MGPG+W+ +R TYNLLD VSRHTIQVYPRSWTA+M+TFDNAGMWSVRSNIWER YLGEQ
Sbjct: 350 MGPGQWSPEARVTYNLLDAVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQ 171
Query: 490 LYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYRA 374
Y+SVISPE SLRDEYNMP+ LR GKVVGLP+PPSY A
Sbjct: 170 FYISVISPEHSLRDEYNMPDNDLRRGKVVGLPLPPSYSA 54
Score = 161 bits (346), Expect(2) = 3e-047
Identities = 71/99 (71%), Positives = 78/99 (78%)
Frame = +3 / +1
Query: 375 AR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALS 554
A *DGG G PTTLP+RR +SGMLYSS S+ SGEMTL +CSPR SQML+RTLHMPALS
Sbjct: 55 AE*DGGSGSPTTLPRRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALS 234
Query: 555 NVIITAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPM 671
NV I AVHDLGYTWIVCRLT S RLYV + H PGP+
Sbjct: 235 NVSIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCPGPI 351
Score = 81.3 bits (171), Expect(3) = 1e-031
Identities = 34/44 (77%), Positives = 37/44 (84%)
Frame = -2 / -1
Query: 669 WGPANGRQRRGVRTTSWTR*AGTRSRCTQGRGRR***RSTTRAC 538
WG +GR+RRG RTT WTR*AGTRSRCT+G GRR *RSTTRAC
Sbjct: 349 WGLGSGRRRRG*RTTCWTR*AGTRSRCTRGHGRRLC*RSTTRAC 218
Score = 81.3 bits (171), Expect(3) = 7e-032
Identities = 37/54 (68%), Positives = 41/54 (75%)
Frame = +2 / +3
Query: 374 GAVGRWHRQADDLAAAEAGLRHVVLVPERPLRRDDAHVQLLAEVLPLPDVGADA 535
G VGR RQ DLAAAE +RHVVLV +R LRRDDA V+LL EV+ LPDVG DA
Sbjct: 54 GGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVVALPDVGPDA 215
Score = 67.5 bits (141), Expect(3) = 1e-031
Identities = 32/55 (58%), Positives = 35/55 (63%)
Frame = -3 / -2
Query: 536 ERPLQHLGXXXXXXXXXXXRHLAGAVAQGRVQHAGDQPPLRQGRRPADATVLPRR 372
ERP+QHLG RHLAGA+A RVQHAG +PP RQGR A A VL RR
Sbjct: 216 ERPVQHLGALLPRGAVLHQRHLAGALAARRVQHAGQRPPPRQGRGAAAAAVLLRR 52
Score = 62.5 bits (130), Expect(2) = 5e-065
Identities = 26/57 (45%), Positives = 33/57 (57%)
Frame = -1 / -3
Query: 841 FKXXLIGXXPPSNTAPTKMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVG 671
F +G PP+ P + PNVI+AEF FI + ENPEKS+ I + AFF VG
Sbjct: 617 FSYNQMGDVPPAVNGPLHVVPNVITAEFGTFIEMVLENPEKSLDSIHLDGYAFFGVG 447
Score = 49.2 bits (101), Expect(2) = 3e-047
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2 / +3
Query: 674 DGEKGXXXDXDXXDALLGVLEXHXDEXXELGADDVG 781
D E+G + D ALLGVL+ H DE ELG DD+G
Sbjct: 450 DAEEGVAVEVDGVQALLGVLQDHLDEGAELGGDDIG 557
Score = 48.7 bits (100), Expect(3) = 7e-032
Identities = 24/52 (46%), Positives = 26/52 (50%)
Frame = +3 / +1
Query: 672 PTAKKAXXXXXXXXXLFSGFSKXTXMNXRNSALMTLGAILVGAVLEGGXXPM 827
PT KKA LFSGFSK M NSA+MTLG G GG P+
Sbjct: 448 PTPKKA*PSRWMESKLFSGFSKTISMKVPNSAVMTLGTTWRGPFTAGGTSPI 603
Score = 46.9 bits (96), Expect(3) = 7e-032
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +2 / +3
Query: 593 LDRVPAHRVQEVVRTPRRCRPFAGPH 670
LDRVPAHRVQ+VVR PR RP PH
Sbjct: 273 LDRVPAHRVQQVVRHPRLRRPLPRPH 350
Score = 27.6 bits (54), Expect(3) = 1e-031
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2 / -1
Query: 741 WXSRTPRRASXXSXSXXXPFSPS 673
W RTPRRA S S P S S
Sbjct: 517 WSWRTPRRAWTPSTSTATPSSAS 449
>gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 661
Score = 227 bits (490), Expect(3) = 4e-061
Identities = 91/110 (82%), Positives = 99/110 (90%)
Frame = -1 / -3
Query: 667 GPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQL 488
GPGK T A RSTYNLLDT+SRHT+QVYPRSWTAVMMTFDNAGMWS+RSNIWER YLGEQL
Sbjct: 647 GPGK*TPACRSTYNLLDTLSRHTVQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQL 468
Query: 487 YVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYRAV*SVDRSRTVLY 338
Y+SV SPERSLRDEYNMPETSLRCGKVVGLP+PPSY +V*S+ R L+
Sbjct: 467 YISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSYLSV*SIGRPPVPLH 318
Score = 207 bits (447), Expect(3) = 3e-055
Identities = 90/104 (86%), Positives = 92/104 (88%)
Frame = +3 / +1
Query: 357 RSTL*TAR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTL 536
R L*T R*DGG GRPTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQML+R L
Sbjct: 337 RPML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRIL 516
Query: 537 HMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGP 668
HMPALSNVIITAVHDLGYTW VCRL VSRRLYVLR A VHLPGP
Sbjct: 517 HMPALSNVIITAVHDLGYTWTVCRLNVSRRLYVLRHAGVHLPGP 648
Score = 109 bits (233), Expect(2) = 3e-030
Identities = 50/65 (76%), Positives = 52/65 (80%)
Frame = +2 / +3
Query: 338 VQHRARSIDALDGAVGRWHRQADDLAAAEAGLRHVVLVPERPLRRDDAHVQLLAEVLPLP 517
V+ R DALDG VGR QADDLAAAEAGL HVVLVPERPLRR DA VQLLAEV+PLP
Sbjct: 318 VKGNRRPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLP 497
Query: 518 DVGAD 532
DVG D
Sbjct: 498 DVGPD 512
Score = 92.3 bits (195), Expect(2) = 6e-038
Identities = 42/62 (67%), Positives = 43/62 (69%)
Frame = -3 / -2
Query: 536 ERPLQHLGXXXXXXXXXXXRHLAGAVAQGRVQHAGDQPPLRQGRRPADATVLPRRLERRS 357
E P+QHLG RHLAGAVAQGRVQHA DQPPLRQGRRPA A VLP RLE R
Sbjct: 516 EYPVQHLGEELPRRAAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVLPLRLEHRP 337
Query: 356 IA 351
A
Sbjct: 336 AA 331
Score = 87.2 bits (184), Expect(2) = 6e-038
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = -2 / -1
Query: 660 ANGRQRRGVRTTSWTR*AGTRSRCTQGRGRR***RSTTRAC 538
AN RQR GVRTTSWTR*AGTRSRCT+GRGRR***RSTTRAC
Sbjct: 640 ANERQRAGVRTTSWTR*AGTRSRCTRGRGRR***RSTTRAC 518
Score = 44.1 bits (90), Expect(2) = 3e-030
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = +2 / +3
Query: 593 LDRVPAHRVQEVVRTPRRCRPFA 661
LDRVPA RVQEVVRTP R R FA
Sbjct: 573 LDRVPAQRVQEVVRTPARWRSFA 641
Score = 25.8 bits (50), Expect(3) = 4e-061
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / -3
Query: 354 RARCCTQLKE 325
RARCCTQ+K+
Sbjct: 308 RARCCTQIKK 279
Score = 24.0 bits (46), Expect(3) = 3e-055
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1 / +3
Query: 181 DEVLSPFVFFFLGIIPRKRTKKKRERINE 267
D+VLSPF+ + RKR + R R +E
Sbjct: 156 DQVLSPFLVGVIIPRGRKRKRSGRRRRDE 242
Score = 24.0 bits (46), Expect(3) = 3e-055
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1 / +3
Query: 157 SRCYACMH 180
SRCY CMH
Sbjct: 51 SRCYLCMH 74
Score = 22.6 bits (43), Expect(3) = 4e-061
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2 / -3
Query: 267 LVYSLSLFFRSLPRNNTQKKKNKGAQDFI 181
LV S S SLP KGAQD I
Sbjct: 242 LVPSSSSASFSLPTARNNNTNQKGAQDLI 156
>gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E06_A002 3', mRNA sequence
Length = 691
Score = 183 bits (394), Expect(3) = 4e-054
Identities = 72/87 (82%), Positives = 79/87 (90%)
Frame = -1 / +2
Query: 598 IQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 419
+QVYPRSWTAVMMTFDNAGMWS+RSNIWER YLGEQLY+SV SPERSLRDEYNMPETSLR
Sbjct: 2 VQVYPRSWTAVMMTFDNAGMWSIRSNIWERNYLGEQLYISVTSPERSLRDEYNMPETSLR 181
Query: 418 CGKVVGLPMPPSYRAV*SVDRSRTVLY 338
CGKVVGLP+PPSY +V*S+ R L+
Sbjct: 182 CGKVVGLPLPPSYLSV*SIGRPPVPLH 262
Score = 160 bits (345), Expect(3) = 1e-047
Identities = 70/80 (87%), Positives = 72/80 (90%)
Frame = +3 / -2
Query: 357 RSTL*TAR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTL 536
R L*T R*DGG GRPTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQML+R L
Sbjct: 243 RPML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRIL 64
Query: 537 HMPALSNVIITAVHDLGYTW 596
HMPALSNVIITAVHDLGYTW
Sbjct: 63 HMPALSNVIITAVHDLGYTW 4
Score = 109 bits (233), Expect(2) = 2e-030
Identities = 50/65 (76%), Positives = 52/65 (80%)
Frame = +2 / -1
Query: 338 VQHRARSIDALDGAVGRWHRQADDLAAAEAGLRHVVLVPERPLRRDDAHVQLLAEVLPLP 517
V+ R DALDG VGR QADDLAAAEAGL HVVLVPERPLRR DA VQLLAEV+PLP
Sbjct: 262 VKGNRRPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEVIPLP 83
Query: 518 DVGAD 532
DVG D
Sbjct: 82 DVGPD 68
Score = 92.3 bits (195), Expect(3) = 2e-032
Identities = 42/62 (67%), Positives = 43/62 (69%)
Frame = -3 / +1
Query: 536 ERPLQHLGXXXXXXXXXXXRHLAGAVAQGRVQHAGDQPPLRQGRRPADATVLPRRLERRS 357
E P+QHLG RHLAGAVAQGRVQHA DQPPLRQGRRPA A VLP RLE R
Sbjct: 64 EYPVQHLGEELPRRAAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVLPLRLEHRP 243
Query: 356 IA 351
A
Sbjct: 244 AA 249
Score = 49.2 bits (101), Expect(3) = 1e-047
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +2 / -3
Query: 44 YMHVHIHDIKNNFG*GTY*IDML 112
+MHVHIH+IKN+FG*GTY*ID L
Sbjct: 668 HMHVHIHNIKNSFG*GTY*IDRL 600
Score = 46.9 bits (96), Expect(2) = 2e-030
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1 / -2
Query: 46 YARTYT*HKEQFWMRDLLDRHA 111
YA TYT*+KEQFW+RDLLDR A
Sbjct: 666 YACTYT*YKEQFWLRDLLDRQA 601
Score = 46.4 bits (95), Expect(3) = 4e-054
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -3 / +2
Query: 110 ACLSNKSLIQNCSLCHVYVRAYI 42
ACLSNKSL QNCSL +VYV AY+
Sbjct: 602 ACLSNKSLSQNCSLYYVYVHAYV 670
Score = 46.0 bits (94), Expect(3) = 2e-032
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -2 / +1
Query: 111 SMSI**VPHPKLFFMSCICTCI 46
S+SI**VP PKLFF+ CICTCI
Sbjct: 601 SLSI**VPQPKLFFILCICTCI 666
Score = 44.6 bits (91), Expect(3) = 2e-032
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = -2 / +3
Query: 597 SRCTQGRGRR***RSTTRAC 538
SRCT+GRGRR***RSTTRAC
Sbjct: 3 SRCTRGRGRR***RSTTRAC 62
Score = 25.8 bits (50), Expect(3) = 4e-054
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / +2
Query: 354 RARCCTQLKE 325
RARCCTQ+K+
Sbjct: 272 RARCCTQIKK 301
Score = 24.0 bits (46), Expect(3) = 1e-047
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1 / -3
Query: 157 SRCYACMH 180
SRCY CMH
Sbjct: 530 SRCYLCMH 507
>gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 437
Score = 204 bits (441), Expect = 1e-051
Identities = 78/96 (81%), Positives = 86/96 (89%)
Frame = -1 / +3
Query: 661 GKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYV 482
G+W+ +R TYNLLD VSRHTIQVYPRSWTA+M+TFDNAGMWSVRSNIWER YLGEQ Y+
Sbjct: 3 GQWSPEARVTYNLLDAVSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYI 182
Query: 481 SVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYRA 374
SVISPE SLRDEYNMP+ LRCGKVVGLP+PPSY A
Sbjct: 183 SVISPEHSLRDEYNMPDNDLRCGKVVGLPLPPSYSA 290
Score = 156 bits (336), Expect = 4e-037
Identities = 70/96 (72%), Positives = 75/96 (78%)
Frame = +3 / -2
Query: 375 AR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALS 554
A *DGG G PTTLPQRR +SGMLYSS S+ SGEMTL +CSPR SQML+RTLHMPALS
Sbjct: 289 AE*DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALS 110
Query: 555 NVIITAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLP 662
NV I AVHDLGYTWIVCRLT S RLYV + H P
Sbjct: 109 NVSIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCP 2
Score = 81.3 bits (171), Expect(2) = 5e-021
Identities = 37/54 (68%), Positives = 41/54 (75%)
Frame = +2 / -1
Query: 374 GAVGRWHRQADDLAAAEAGLRHVVLVPERPLRRDDAHVQLLAEVLPLPDVGADA 535
G VGR RQ DLAAAE +RHVVLV +R LRRDDA V+LL EV+ LPDVG DA
Sbjct: 290 GGVGRRQRQPHDLAAAEVVVRHVVLVAQRVLRRDDADVELLPEVVALPDVGPDA 129
Score = 74.8 bits (157), Expect(2) = 7e-028
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = -2 / +1
Query: 657 NGRQRRGVRTTSWTR*AGTRSRCTQGRGRR***RSTTRAC 538
+GR+RRG RTT WTR*AGTRSRCT+G GRR *RSTTRAC
Sbjct: 7 SGRRRRG*RTTCWTR*AGTRSRCTRGHGRRLC*RSTTRAC 126
Score = 70.7 bits (148), Expect(2) = 7e-028
Identities = 33/55 (60%), Positives = 36/55 (65%)
Frame = -3 / +2
Query: 536 ERPLQHLGXXXXXXXXXXXRHLAGAVAQGRVQHAGDQPPLRQGRRPADATVLPRR 372
ERP+QHLG RHLAGA+A RVQHAG +PPLRQGR A A VL RR
Sbjct: 128 ERPVQHLGALLPRGAVLHQRHLAGALAARRVQHAGQRPPLRQGRGAAAAAVLLRR 292
Score = 41.4 bits (84), Expect(2) = 5e-021
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +2 / -1
Query: 593 LDRVPAHRVQEVVRTPRRCRP 655
LDRVPAHRVQ+VVR PR RP
Sbjct: 71 LDRVPAHRVQQVVRHPRLRRP 9
>gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F09_A002 3', mRNA sequence
Length = 658
Score = 167 bits (359), Expect(4) = 1e-050
Identities = 66/80 (82%), Positives = 72/80 (90%)
Frame = -1 / +3
Query: 577 WTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVGL 398
WTAVMMTFDNAGMWS+RSNIWER YLGEQLY+SV SPERSLRDEYNMPETSLRCGKVVGL
Sbjct: 3 WTAVMMTFDNAGMWSIRSNIWERNYLGEQLYISVTSPERSLRDEYNMPETSLRCGKVVGL 182
Query: 397 PMPPSYRAV*SVDRSRTVLY 338
P+PPSY +V*S+ R L+
Sbjct: 183 PLPPSYLSV*SIGRPPVPLH 242
Score = 143 bits (306), Expect(4) = 2e-045
Identities = 64/74 (86%), Positives = 66/74 (89%)
Frame = +3 / -1
Query: 357 RSTL*TAR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTL 536
R L*T R*DGG GRPTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQML+R L
Sbjct: 223 RPML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR*FLSQMLDRIL 44
Query: 537 HMPALSNVIITAVH 578
HMPALSNVIITAVH
Sbjct: 43 HMPALSNVIITAVH 2
Score = 107 bits (229), Expect(2) = 7e-030
Identities = 49/65 (75%), Positives = 51/65 (78%)
Frame = +2 / -3
Query: 338 VQHRARSIDALDGAVGRWHRQADDLAAAEAGLRHVVLVPERPLRRDDAHVQLLAEVLPLP 517
V+ R DALDG VGR QADDLAAAEAGL HVVLVPERPLRR DA VQL AEV+PLP
Sbjct: 242 VKGNRRPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLFAEVIPLP 63
Query: 518 DVGAD 532
DVG D
Sbjct: 62 DVGPD 48
Score = 92.3 bits (195), Expect(3) = 2e-028
Identities = 42/62 (67%), Positives = 43/62 (69%)
Frame = -3 / +2
Query: 536 ERPLQHLGXXXXXXXXXXXRHLAGAVAQGRVQHAGDQPPLRQGRRPADATVLPRRLERRS 357
E P+QHLG RHLAGAVAQGRVQHA DQPPLRQGRRPA A VLP RLE R
Sbjct: 44 EYPVQHLGEELPRRTAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVLPLRLEHRP 223
Query: 356 IA 351
A
Sbjct: 224 AA 229
Score = 49.2 bits (101), Expect(4) = 2e-045
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +2 / -3
Query: 44 YMHVHIHDIKNNFG*GTY*IDML 112
+MHVHIH+IKN+FG*GTY*ID L
Sbjct: 647 HMHVHIHNIKNSFG*GTY*IDRL 579
Score = 46.9 bits (96), Expect(2) = 7e-030
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1 / -2
Query: 46 YARTYT*HKEQFWMRDLLDRHA 111
YA TYT*+KEQFW+RDLLDR A
Sbjct: 645 YACTYT*YKEQFWLRDLLDRQA 580
Score = 46.4 bits (95), Expect(4) = 1e-050
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -3 / +2
Query: 110 ACLSNKSLIQNCSLCHVYVRAYI 42
ACLSNKSL QNCSL +VYV AY+
Sbjct: 581 ACLSNKSLSQNCSLYYVYVHAYV 649
Score = 46.0 bits (94), Expect(3) = 2e-028
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -2 / +1
Query: 111 SMSI**VPHPKLFFMSCICTCI 46
S+SI**VP PKLFF+ CICTCI
Sbjct: 580 SLSI**VPQPKLFFILCICTCI 645
Score = 30.9 bits (61), Expect(3) = 2e-028
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -2 / +1
Query: 579 RGRR***RSTTRAC 538
RGRR***RSTTRAC
Sbjct: 1 RGRR***RSTTRAC 42
Score = 25.8 bits (50), Expect(4) = 1e-050
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / +3
Query: 354 RARCCTQLKE 325
RARCCTQ+K+
Sbjct: 252 RARCCTQIKK 281
Score = 24.0 bits (46), Expect(4) = 2e-045
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1 / -3
Query: 181 DEVLSPFVFFFLGIIPRKRTKKKRERINE 267
D+VLSPF+ + RKR + R R +E
Sbjct: 404 DQVLSPFLVGVIIPRGRKRKRSGRRRRDE 318
Score = 24.0 bits (46), Expect(4) = 2e-045
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1 / -3
Query: 157 SRCYACMH 180
SRCY CMH
Sbjct: 509 SRCYLCMH 486
Score = 22.6 bits (43), Expect(4) = 1e-050
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2 / +3
Query: 267 LVYSLSLFFRSLPRNNTQKKKNKGAQDFI 181
LV S S SLP KGAQD I
Sbjct: 318 LVPSSSSASFSLPTARNNNTNQKGAQDLI 404
>gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 558
Score = 170 bits (366), Expect(4) = 5e-046
Identities = 68/83 (81%), Positives = 74/83 (89%)
Frame = -1 / -1
Query: 586 PRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKV 407
PRSWTAVMMTFDNAGMWS+RSNIWER LGEQLY+SV SPERSLRDEYNMPETSLRCGKV
Sbjct: 501 PRSWTAVMMTFDNAGMWSIRSNIWERNSLGEQLYISVTSPERSLRDEYNMPETSLRCGKV 322
Query: 406 VGLPMPPSYRAV*SVDRSRTVLY 338
VGLP+PPSY +V*S+ R L+
Sbjct: 321 VGLPLPPSYLSV*SIGRPPVPLH 253
Score = 146 bits (314), Expect(3) = 4e-037
Identities = 65/77 (84%), Positives = 67/77 (87%)
Frame = +3 / +2
Query: 357 RSTL*TAR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTL 536
R L T R DGG GRPTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR LSQML+R L
Sbjct: 272 RPMLXTERXDGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPREFLSQMLDRIL 451
Query: 537 HMPALSNVIITAVHDLG 587
HMPALSNVIITAVHDLG
Sbjct: 452 HMPALSNVIITAVHDLG 502
Score = 87.7 bits (185), Expect(2) = 9e-021
Identities = 40/62 (64%), Positives = 41/62 (66%)
Frame = -3 / -3
Query: 536 ERPLQHLGXXXXXXXXXXXRHLAGAVAQGRVQHAGDQPPLRQGRRPADATVLPRRLERRS 357
E P+QHLG RHLAGAVAQGRVQHA DQPPLRQGRRPA A V P R E R
Sbjct: 451 EYPVQHLGEEFPRRAAVHQRHLAGAVAQGRVQHARDQPPLRQGRRPATAAVXPLRXEHRP 272
Query: 356 IA 351
A
Sbjct: 271 AA 266
Score = 34.1 bits (68), Expect(2) = 9e-021
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -2 / -2
Query: 585 QGRGRR***RSTTRAC 538
+GRGRR***RSTTRAC
Sbjct: 500 RGRGRR***RSTTRAC 453
Score = 25.8 bits (50), Expect(4) = 5e-046
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / -1
Query: 354 RARCCTQLKE 325
RARCCTQ+K+
Sbjct: 243 RARCCTQIKK 214
Score = 24.0 bits (46), Expect(3) = 4e-037
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3 / +3
Query: 585 GYTWIVCR 608
GYTW VCR
Sbjct: 501 GYTWTVCR 524
Score = 24.0 bits (46), Expect(3) = 4e-037
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1 / +1
Query: 181 DEVLSPFVFFFLGIIPRKRTKKKRERINE 267
D+VLSPF+ + RKR + R R +E
Sbjct: 91 DQVLSPFLVGVIIPRGRKRKRSGRRRRDE 177
Score = 23.5 bits (45), Expect(4) = 5e-046
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -1 / -3
Query: 610 SRHTIQVYP 584
+RHT+QVYP
Sbjct: 526 ARHTVQVYP 500
Score = 22.6 bits (43), Expect(4) = 5e-046
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2 / -1
Query: 267 LVYSLSLFFRSLPRNNTQKKKNKGAQDFI 181
LV S S SLP KGAQD I
Sbjct: 177 LVPSSSSASFSLPTARNNNTNQKGAQDLI 91
>gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 180 bits (388), Expect = 2e-044
Identities = 69/80 (86%), Positives = 74/80 (92%)
Frame = -1 / +3
Query: 613 VSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMP 434
VSRHTIQVYPRSWTA+M+TFDNAGMWSVRSNIWER YLGEQ Y+SVISPE SLRDEYNMP
Sbjct: 3 VSRHTIQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYISVISPEHSLRDEYNMP 182
Query: 433 ETSLRCGKVVGLPMPPSYRA 374
+ LRCGKVVGLP+PPSY A
Sbjct: 183 DNDLRCGKVVGLPLPPSYSA 242
Score = 143 bits (306), Expect = 5e-033
Identities = 63/80 (78%), Positives = 67/80 (83%)
Frame = +3 / -2
Query: 375 AR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALS 554
A *DGG G PTTLPQRR +SGMLYSS S+ SGEMTL +CSPR SQML+RTLHMPALS
Sbjct: 241 AE*DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALS 62
Query: 555 NVIITAVHDLGYTWIVCRLT 614
NV I AVHDLGYTWIVCRLT
Sbjct: 61 NVSIIAVHDLGYTWIVCRLT 2
>gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 3', mRNA sequence
Length = 564
Score = 168 bits (362), Expect = 9e-041
Identities = 64/75 (85%), Positives = 69/75 (92%)
Frame = -1 / +1
Query: 598 IQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 419
IQVYPRSWTA+M+TFDNAGMWSVRSNIWER YLGEQ Y+SVISPE SLRDEYNMP+ LR
Sbjct: 1 IQVYPRSWTAIMLTFDNAGMWSVRSNIWERYYLGEQFYISVISPEHSLRDEYNMPDNDLR 180
Query: 418 CGKVVGLPMPPSYRA 374
CGKVVGLP+PPSY A
Sbjct: 181 CGKVVGLPLPPSYSA 225
Score = 128 bits (275), Expect = 9e-029
Identities = 57/74 (77%), Positives = 61/74 (82%)
Frame = +3 / -2
Query: 375 AR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALS 554
A *DGG G PTTLPQRR +SGMLYSS S+ SGEMTL +CSPR SQML+RTLHMPALS
Sbjct: 224 AE*DGGSGSPTTLPQRRSLSGMLYSSRSECSGEMTLM*NCSPR**RSQMLDRTLHMPALS 45
Query: 555 NVIITAVHDLGYTW 596
NV I AVHDLGYTW
Sbjct: 44 NVSIIAVHDLGYTW 3
>gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 5', mRNA sequence
Length = 727
Score = 165 bits (354), Expect = 1e-039
Identities = 69/99 (69%), Positives = 74/99 (74%)
Frame = -1 / +3
Query: 886 TPVKXXXYFNAXXXXFKXXLIGXXPPSNTAPTKMAPNVISAEFRXFIXVXFENPEKSIXX 707
TPVK YFNA F+ LIG PP+ +APTKMAPNV+ AEFR FI V FENPEKSI
Sbjct: 429 TPVKLAEYFNATDGVFQYDLIGDVPPAKSAPTKMAPNVLRAEFRTFIEVVFENPEKSIDT 608
Query: 706 IXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQV 590
I AFFAVGMGPGKWT A RSTYNLLDTVSRHT+QV
Sbjct: 609 FHIDGYAFFAVGMGPGKWTPACRSTYNLLDTVSRHTVQV 725
Score = 140 bits (300), Expect = 3e-032
Identities = 65/107 (60%), Positives = 65/107 (60%)
Frame = +3 / -1
Query: 588 YTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGFSKXTXMNXRNSA 767
YTW VCRLTVSRRLYVLR A VHLPGPMPTAK A LFSGFS T M RNSA
Sbjct: 727 YTWTVCRLTVSRRLYVLRHAGVHLPGPMPTAKNA*PSMWKVSMLFSGFSNTTSMKVRNSA 548
Query: 768 LMTLGAILVGAVLEGGXXPMXXXLXXXSXALKYXXXLTGVXXXXXXT 908
TLGAILVGA L GG PM S ALKY TGV T
Sbjct: 547 RRTLGAILVGADLAGGTSPMRSYWNTPSVALKYSASFTGVSGSTCDT 407
Score = 127 bits (272), Expect = 2e-028
Identities = 59/98 (60%), Positives = 62/98 (63%)
Frame = +2 / -3
Query: 593 LDRVPAHRVQEVVRTPRRCRPFAGPHADGEKGXXXDXDXXDALLGVLEXHXDEXXELGAD 772
LDRVPAHRVQEVVRTP R RPFA HADGE+ D + DALLGVLE H DE ELGA+
Sbjct: 722 LDRVPAHRVQEVVRTPARWRPFARAHADGEECVAVDVEGVDALLGVLEHHLDEGAELGAE 543
Query: 773 DVGCHLXXXXXXXXXXPDEXXLEXXXAGVEVLXXLDGG 886
DVG HL DE LE GVEVL L GG
Sbjct: 542 DVGSHLGGRGFGWRHVADEVVLEHPVGGVEVLGELHGG 429
>gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 661
Score = 163 bits (351), Expect = 3e-039
Identities = 62/126 (49%), Positives = 85/126 (67%)
Frame = -1 / +3
Query: 778 NVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHT 599
+V++A R ++ + F+NPE + I AF+ VGM G+WT ASR YNL D ++R+T
Sbjct: 66 SVMAANMRDYVEIVFQNPENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 245
Query: 598 IQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 419
+QVYP+SWTA+ M DN GMW+VRS W RQYLG+Q Y+ V SP S RDE +P+ +L
Sbjct: 246 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 425
Query: 418 CGKVVG 401
CG+ G
Sbjct: 426 CGRASG 443
>gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 674
Score = 160 bits (343), Expect = 4e-038
Identities = 61/126 (48%), Positives = 84/126 (66%)
Frame = -1 / +1
Query: 778 NVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHT 599
+V++A R ++ + F+N E + I AF+ VGM G+WT ASR YNL D ++R+T
Sbjct: 37 SVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 216
Query: 598 IQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 419
+QVYP+SWTA+ M DN GMW+VRS W RQYLG+Q Y+ V SP S RDE +P+ +L
Sbjct: 217 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 396
Query: 418 CGKVVG 401
CG+ G
Sbjct: 397 CGRASG 414
>gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 646
Score = 160 bits (343), Expect = 4e-038
Identities = 61/126 (48%), Positives = 84/126 (66%)
Frame = -1 / +3
Query: 778 NVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHT 599
+V++A R ++ + F+N E + I AF+ VGM G+WT ASR YNL D ++R+T
Sbjct: 9 SVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 188
Query: 598 IQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 419
+QVYP+SWTA+ M DN GMW+VRS W RQYLG+Q Y+ V SP S RDE +P+ +L
Sbjct: 189 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 368
Query: 418 CGKVVG 401
CG+ G
Sbjct: 369 CGRASG 386
>gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_H07_A002 3', mRNA sequence
Length = 742
Score = 160 bits (343), Expect = 4e-038
Identities = 61/126 (48%), Positives = 84/126 (66%)
Frame = -1 / +1
Query: 778 NVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHT 599
+V++A R ++ + F+N E + I AF+ VGM G+WT ASR YNL D ++R+T
Sbjct: 82 SVMAANMRDYVEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYT 261
Query: 598 IQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLR 419
+QVYP+SWTA+ M DN GMW+VRS W RQYLG+Q Y+ V SP S RDE +P+ +L
Sbjct: 262 LQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALL 441
Query: 418 CGKVVG 401
CG+ G
Sbjct: 442 CGRASG 459
>gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_G11_A002 3', mRNA sequence
Length = 725
Score = 158 bits (340), Expect = 1e-037
Identities = 57/127 (44%), Positives = 84/127 (66%)
Frame = -1 / +3
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ F+ V F+N E + + F+ VG G G+W R TYNL+D +RHT+
Sbjct: 36 VLRLGLHEFVEVVFQNTESELQAWHLDGYDFWVVGYGDGQWNETQRQTYNLVDAQARHTV 215
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP W+A++++ DN GMW++RS IW+RQYLG+QLY+ V +P++S +EY +P ++ C
Sbjct: 216 QVYPNGWSAILVSLDNQGMWNLRSAIWDRQYLGQQLYLRVWTPQQSFSNEYAIPTDAILC 395
Query: 415 GKVVGLP 395
GK VGLP
Sbjct: 396 GKAVGLP 416
>gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 5', mRNA sequence
Length = 545
Score = 155 bits (333), Expect(2) = 8e-037
Identities = 60/88 (68%), Positives = 70/88 (79%)
Frame = -1 / +3
Query: 796 PTKMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLD 617
P + PNVI+AEFR FI + FENPEKS+ I + AFF VGMGPG+W+ +R TYNLLD
Sbjct: 282 PLHVVPNVITAEFRTFIEIVFENPEKSLDSIHLDGYAFFGVGMGPGQWSPEARVTYNLLD 461
Query: 616 TVSRHTIQVYPRSWTAVMMTFDNAGMWS 533
VSRHTIQVYPRSWTA+M+TF NAGMWS
Sbjct: 462 AVSRHTIQVYPRSWTAIMLTFYNAGMWS 545
Score = 122 bits (260), Expect = 1e-026
Identities = 54/83 (65%), Positives = 57/83 (68%)
Frame = +3 / -2
Query: 534 LHMPALSNVIITAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXX 713
LHMPAL NV I AVHDLGYTWIVCRLT S RLYV + H PGP+PT KKA
Sbjct: 544 LHMPAL*NVSIIAVHDLGYTWIVCRLTASSRLYVTLASGDHCPGPIPTPKKA*PSRWMES 365
Query: 714 XLFSGFSKXTXMNXRNSALMTLG 782
LFSGFSK M RNSA+MTLG
Sbjct: 364 KLFSGFSKTISMKVRNSAVMTLG 296
Score = 104 bits (221), Expect = 3e-021
Identities = 46/66 (69%), Positives = 49/66 (74%)
Frame = -2 / +1
Query: 735 SRTPRRASXXSXSXXXPFSPSAWGPANGRQRRGVRTTSWTR*AGTRSRCTQGRGRR***R 556
SRTPRRA S S P S S WG +GR+RRG RTT WTR*AGTRSRCT+G GRR *R
Sbjct: 343 SRTPRRAWTPSTSTATPSSASGWGLGSGRRRRG*RTTCWTR*AGTRSRCTRGHGRRLC*R 522
Query: 555 STTRAC 538
STTRAC
Sbjct: 523 STTRAC 540
Score = 22.1 bits (42), Expect(2) = 8e-037
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3 / +2
Query: 884 PRQAXXVLQRXRXXXQV 834
PR+A VLQR R Q+
Sbjct: 11 PREARRVLQRHRTQDQL 61
>gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 151 bits (325), Expect = 1e-035
Identities = 58/116 (50%), Positives = 77/116 (66%)
Frame = -1 / +1
Query: 748 IXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTA 569
+ + F+N E + I AF+ VGM G+WT ASR YNL D ++R+T+QVYP+SWTA
Sbjct: 1 VEIVFQNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTA 180
Query: 568 VMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVG 401
+ M DN GMW+VRS W RQYLG+Q Y+ V SP S RDE +P+ +L CG+ G
Sbjct: 181 IYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRASG 348
>gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_A12_A002 3', mRNA sequence
Length = 623
Score = 147 bits (315), Expect = 3e-034
Identities = 57/111 (51%), Positives = 74/111 (66%)
Frame = -1 / +3
Query: 733 ENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTF 554
+N E + I AF+ VGM G+WT ASR YNL D ++R+T+QVYP+SWTA+ M
Sbjct: 3 QNTENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTAIYMPL 182
Query: 553 DNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVG 401
DN GMW+VRS W RQYLG+Q Y+ V SP S RDE +P+ +L CG+ G
Sbjct: 183 DNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENPIPKNALLCGRASG 335
>gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 107 bits (229), Expect(4) = 5e-033
Identities = 44/56 (78%), Positives = 49/56 (87%)
Frame = -1 / +2
Query: 505 YLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYRAV*SVDRSRTVLY 338
YLGEQLY+SV SPERSLRDEYNMPETSLRCGKVVGLP+PPSY +V*S+ R L+
Sbjct: 2 YLGEQLYISVTSPERSLRDEYNMPETSLRCGKVVGLPLPPSYLSV*SIGRPPVPLH 169
Score = 98.7 bits (209), Expect(4) = 4e-031
Identities = 43/49 (87%), Positives = 44/49 (89%)
Frame = +3 / -2
Query: 357 RSTL*TAR*DGGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPR 503
R L*T R*DGG GRPTTLPQRRLVSGMLYSSLSDRSGE+TL YSCSPR
Sbjct: 150 RPML*TER*DGGSGRPTTLPQRRLVSGMLYSSLSDRSGEVTLMYSCSPR 4
Score = 90.9 bits (192), Expect(2) = 5e-023
Identities = 43/56 (76%), Positives = 44/56 (78%)
Frame = +2 / -1
Query: 338 VQHRARSIDALDGAVGRWHRQADDLAAAEAGLRHVVLVPERPLRRDDAHVQLLAEV 505
V+ R DALDG VGR QADDLAAAEAGL HVVLVPERPLRR DA VQLLAEV
Sbjct: 169 VKGNRRPADALDGEVGRRQWQADDLAAAEAGLWHVVLVPERPLRRGDADVQLLAEV 2
Score = 45.1 bits (92), Expect(4) = 5e-033
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -2 / +3
Query: 111 SMSI**VPHPKLFFMSCICTCI 46
S+SI**VP PK+FF+ CICTCI
Sbjct: 507 SLSI**VPQPKMFFILCICTCI 572
Score = 45.1 bits (92), Expect(4) = 4e-031
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +2 / -1
Query: 44 YMHVHIHDIKNNFG*GTY*IDML 112
+MHVHIH+IKN FG*GTY ID L
Sbjct: 574 HMHVHIHNIKNIFG*GTYYIDRL 506
Score = 40.5 bits (82), Expect(2) = 5e-023
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1 / -3
Query: 46 YARTYT*HKEQFWMRDLLDRHA 111
YA TYT*+KE FW+RDLL R A
Sbjct: 572 YACTYT*YKEHFWLRDLLYRQA 507
Score = 25.8 bits (50), Expect(4) = 5e-033
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / +2
Query: 354 RARCCTQLKE 325
RARCCTQ+K+
Sbjct: 179 RARCCTQIKK 208
Score = 24.0 bits (46), Expect(4) = 4e-031
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1 / -1
Query: 181 DEVLSPFVFFFLGIIPRKRTKKKRERINE 267
D+VLSPF+ + RKR + R R +E
Sbjct: 331 DQVLSPFLVGVIIPRGRKRKRSGRRRRDE 245
Score = 24.0 bits (46), Expect(4) = 4e-031
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1 / -1
Query: 157 SRCYACMH 180
SRCY CMH
Sbjct: 436 SRCYLCMH 413
Score = 22.6 bits (43), Expect(4) = 5e-033
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2 / +2
Query: 267 LVYSLSLFFRSLPRNNTQKKKNKGAQDFI 181
LV S S SLP KGAQD I
Sbjct: 245 LVPSSSSASFSLPTARNNNTNQKGAQDLI 331
>gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B07_A002 3', mRNA sequence
Length = 523
Score = 137 bits (293), Expect = 3e-031
Identities = 52/100 (52%), Positives = 67/100 (67%)
Frame = -1 / +1
Query: 676 VGMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLG 497
VGM G W+ SR YNL+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG
Sbjct: 1 VGMDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLG 180
Query: 496 EQLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYR 377
+Q Y+ V +P RS RDE MP+ +L CG+ S R
Sbjct: 181 QQFYLRVYTPSRSFRDELPMPDNALLCGRATAAAATNSSR 300
>gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232344, DNA
sequence
Length = 649
Score = 132 bits (283), Expect = 7e-030
Identities = 50/98 (51%), Positives = 65/98 (66%)
Frame = -1 / +2
Query: 670 MGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQ 491
M G W+ SR YNL+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+Q
Sbjct: 44 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 223
Query: 490 LYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYR 377
Y+ V +P RS RDE MP+ +L CG+ S R
Sbjct: 224 FYLRVYTPSRSFRDELPMPDNALLCGRATAAAATNSSR 337
>gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 645
Score = 132 bits (283), Expect = 7e-030
Identities = 50/98 (51%), Positives = 65/98 (66%)
Frame = -1 / -2
Query: 670 MGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQ 491
M G W+ SR YNL+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+Q
Sbjct: 518 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 339
Query: 490 LYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYR 377
Y+ V +P RS RDE MP+ +L CG+ S R
Sbjct: 338 FYLRVYTPSRSFRDELPMPDNALLCGRATAAAATNSSR 225
>gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228i05, DNA
sequence
Length = 620
Score = 132 bits (283), Expect = 7e-030
Identities = 50/98 (51%), Positives = 65/98 (66%)
Frame = -1 / -1
Query: 670 MGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQ 491
M G W+ SR YNL+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+Q
Sbjct: 479 MDVGTWSNKSRDGYNLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 300
Query: 490 LYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYR 377
Y+ V +P RS RDE MP+ +L CG+ S R
Sbjct: 299 FYLRVYTPSRSFRDELPMPDNALLCGRATAAAATNSSR 186
>gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_E06_A002 3', mRNA sequence
Length = 521
Score = 132 bits (283), Expect = 7e-030
Identities = 50/99 (50%), Positives = 65/99 (65%)
Frame = -1 / +2
Query: 673 GMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGE 494
GM G W+ SR Y L+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+
Sbjct: 2 GMDVGTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQ 181
Query: 493 QLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYR 377
Q Y+ V +P RS RDE MP+ +L CG+ S R
Sbjct: 182 QFYLRVYTPSRSFRDELPMPDNALLCGRATAAAATNSSR 298
>gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_D05_A002 3', mRNA sequence
Length = 524
Score = 128 bits (275), Expect = 9e-029
Identities = 49/99 (49%), Positives = 64/99 (64%)
Frame = -1 / +2
Query: 673 GMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGE 494
GM W+ SR Y L+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+
Sbjct: 2 GMDVRTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQ 181
Query: 493 QLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYR 377
Q Y+ V +P RS RDE MP+ +L CG+ S R
Sbjct: 182 QFYLRVYTPSRSFRDELPMPDNALLCGRATAAAATNSSR 298
>gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B11_A002 3', mRNA sequence
Length = 523
Score = 122 bits (261), Expect = 8e-027
Identities = 47/98 (47%), Positives = 62/98 (63%)
Frame = -1 / +3
Query: 670 MGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQ 491
M G W+ SR Y L+D VSR T+QVYPR WTAV++ DN GMW++RS +W R+YLG+Q
Sbjct: 3 MDVGTWSNKSRDGYTLVDAVSRCTVQVYPRGWTAVLIALDNVGMWNMRSEVWARRYLGQQ 182
Query: 490 LYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPPSYR 377
Y+ V +P RS RDE MP+ + G+ S R
Sbjct: 183 FYLRVYTPSRSFRDELPMPDNAFFWGRATAAAATNSSR 296
>gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 501
Score = 120 bits (257), Expect = 3e-026
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = -1 / +1
Query: 643 SRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPE 464
SR YNL D ++R+T+QVYP+SWTA+ M DN GMW+VRS W RQYLG+Q Y+ V SP
Sbjct: 1 SRQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPA 180
Query: 463 RSLRDEYNMPETSLRCGKVVG 401
S RDE +P+ +L CG+ G
Sbjct: 181 NSWRDENPIPKNALLCGRASG 243
>gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 505
Score = 120 bits (257), Expect = 3e-026
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = -1 / +3
Query: 643 SRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPE 464
SR YNL D ++R+T+QVYP+SWTA+ M DN GMW+VRS W RQYLG+Q Y+ V SP
Sbjct: 3 SRQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPA 182
Query: 463 RSLRDEYNMPETSLRCGKVVG 401
S RDE +P+ +L CG+ G
Sbjct: 183 NSWRDENPIPKNALLCGRASG 245
>gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 523
Score = 105 bits (223), Expect(2) = 1e-024
Identities = 45/72 (62%), Positives = 49/72 (68%)
Frame = -1 / +1
Query: 886 TPVKXXXYFNAXXXXFKXXLIGXXPPSNTAPTKMAPNVISAEFRXFIXVXFENPEKSIXX 707
TPVK YFNA F+ LIG PP+ +APTKMAPNV+ AEFR FI V FENPEKSI
Sbjct: 172 TPVKLAEYFNATDGVFQYDLIGDVPPAKSAPTKMAPNVLRAEFRTFIEVVFENPEKSIDT 351
Query: 706 IXIXXXAFFAVG 671
I AFFAVG
Sbjct: 352 FHIDGYAFFAVG 387
Score = 29.9 bits (59), Expect(2) = 1e-024
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / +3
Query: 679 AVGMGPGKWTAASRS 635
A MGPGKWT A RS
Sbjct: 477 ACSMGPGKWTPACRS 521
>gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 110 bits (235), Expect = 3e-023
Identities = 40/73 (54%), Positives = 53/73 (72%)
Frame = -1 / +1
Query: 619 DTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYN 440
D ++R+T+QVYP+SWTA+ M DN GMW+VRS W RQYLG+Q Y+ V SP S RDE
Sbjct: 1 DAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSESWARQYLGQQFYLRVYSPANSWRDENP 180
Query: 439 MPETSLRCGKVVG 401
+P+ +L CG+ G
Sbjct: 181 IPKNALLCGRASG 219
>gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 108 bits (230), Expect = 1e-022
Identities = 42/110 (38%), Positives = 68/110 (61%)
Frame = -1 / +1
Query: 796 PTKMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLD 617
P + +VI++ ++ F+ + F+N + ++ I AF+ VGM G+WT R TYN D
Sbjct: 10 PPVIRTSVINSTYKNFLEIVFQNNDTTVQTYHIDGYAFWVVGMDYGEWTENIRGTYNKWD 189
Query: 616 TVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISP 467
VSR T QV+P +WTAVM++ D+ G W+VR+ + YLG++ + V+ P
Sbjct: 190 GVSRCTTQVFPGAWTAVMLSLDSPGFWNVRTENLDTWYLGQETSIRVVDP 339
>gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164251, DNA
sequence
Length = 687
Score = 106 bits (226), Expect = 5e-022
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = -1 / -3
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYPRSWTA+ M DN GMW+VRS W RQYLG+Q Y+ V +P SLRDEY +P+ +L C
Sbjct: 247 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 68
Query: 415 GKVVG 401
G+ G
Sbjct: 67 GRAAG 53
>gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174347, DNA
sequence
Length = 688
Score = 106 bits (226), Expect = 5e-022
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = -1 / +3
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYPRSWTA+ M DN GMW+VRS W RQYLG+Q Y+ V +P SLRDEY +P+ +L C
Sbjct: 183 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 362
Query: 415 GKVVG 401
G+ G
Sbjct: 363 GRAAG 377
>gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195330, DNA
sequence
Length = 706
Score = 106 bits (226), Expect = 5e-022
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = -1 / -1
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYPRSWTA+ M DN GMW+VRS W RQYLG+Q Y+ V +P SLRDEY +P+ +L C
Sbjct: 472 QVYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLC 293
Query: 415 GKVVG 401
G+ G
Sbjct: 292 GRAAG 278
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 841,921,787
Number of Sequences: 832831
Number of extensions: 11385315
Number of successful extensions: 129675
Number of sequences better than 1.0e-020: 36
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 29141270197
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)