TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192701.2.2
(654 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE358689.1|BE358689 DG1_31_E11.b1_A002 Dark Grown 1 (DG1... 176 1e-054
gb|BE357918.1|BE357918 DG1_23_F06.b1_A002 Dark Grown 1 (DG1... 176 2e-054
gb|CW301949.1|CW301949 104_786_11464467_116_35662_016 Sorgh... 174 2e-049
gb|BE357990.1|BE357990 DG1_23_F06.g1_A002 Dark Grown 1 (DG1... 176 3e-048
gb|CL168403.1|CL168403 104_366_10810792_148_31806_088 Sorgh... 176 5e-046
gb|CW443839.1|CW443839 fsbb001f164c12f0 Sorghum methylation... 176 5e-046
gb|BE358567.1|BE358567 DG1_31_E11.g1_A002 Dark Grown 1 (DG1... 176 5e-046
gb|CW270223.1|CW270223 104_741_11402291_148_35328_036 Sorgh... 134 1e-037
gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1... 144 2e-033
gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum b... 144 2e-033
gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bi... 144 2e-033
gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bi... 144 2e-033
gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum b... 144 2e-033
gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum b... 144 2e-033
gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum b... 141 1e-032
gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum b... 141 1e-032
gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorgh... 138 6e-032
gb|CW387256.1|CW387256 fsbb001f071i10f0 Sorghum methylation... 137 1e-031
gb|BE355997.1|BE355997 DG1_121_G12.b1_A002 Dark Grown 1 (DG... 137 1e-031
gb|CF484658.1|CF484658 POL1_26_E07.g1_A002 Pollen Sorghum b... 136 4e-031
gb|CF488807.1|CF488807 POL1_52_G10.b1_A002 Pollen Sorghum b... 130 2e-029
gb|BZ335127.1|BZ335127 hx95f10.b1 WGS-SbicolorF (JM107 adap... 130 2e-029
gb|CW226517.1|CW226517 104_664_11204928_148_37221_088 Sorgh... 130 2e-029
gb|CW356428.1|CW356428 fsbb001f021i03f0 Sorghum methylation... 102 6e-021
>gb|BE358689.1|BE358689 DG1_31_E11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 176 bits (379), Expect(4) = 1e-054
Identities = 60/66 (90%), Positives = 62/66 (93%)
Frame = +2 / +3
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC SRCS+TQY+KACLT CNKCCA CLCVPPGFYGNKGACPCYNNWKTKEG
Sbjct: 195 NLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCYNNWKTKEG 374
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 375 GPKCP* 392
Score = 103 bits (219), Expect(2) = 2e-023
Identities = 48/73 (65%), Positives = 52/73 (71%)
Frame = +1 / +2
Query: 241 QPESLGVLAQVRVAVLQDAVQEGLPHLM*QVLRQVPLRATGVXXXXXXXXXXXXXENQGR 420
QPE+LGVLAQVRVAVL DAVQEGLPHL+ QVLR VPLRA G+ E+QGR
Sbjct: 194 QPEALGVLAQVRVAVLADAVQEGLPHLLQQVLRHVPLRAAGLLRQQGRLPLLQQLEDQGR 373
Query: 421 RAQVPLEDPPQLP 459
RAQVPLE P P
Sbjct: 374 RAQVPLELDPHTP 412
Score = 85.8 bits (181), Expect(4) = 7e-029
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1 / -2
Query: 354 TQRHLAQHLLHKVRQAFLYCVLEHRDPHLGEHSQGFR 244
TQRH+AQHLL KVRQAFLYCV EHRD HLGEHSQGFR
Sbjct: 307 TQRHVAQHLLQKVRQAFLYCVCEHRDAHLGEHSQGFR 197
Score = 44.6 bits (91), Expect(4) = 1e-054
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +1 / +2
Query: 82 PTRTSDGDQGHLLPVARIPAPRRR 153
PTRTS G+QG L P ARIPAPRRR
Sbjct: 32 PTRTSYGEQGGLHPGARIPAPRRR 103
Score = 41.4 bits (84), Expect(4) = 7e-029
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 458 GSCGGSSRGTWALLPW 411
G CG SSRGTWALLPW
Sbjct: 411 GVCGSSSRGTWALLPW 364
Score = 29.9 bits (59), Expect(4) = 7e-029
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1 / -2
Query: 147 ARSRDASNRKQMTLVAIAR 91
ARSR+AS R + TL+AIAR
Sbjct: 97 ARSRNASTRMETTLLAIAR 41
Score = 29.5 bits (58), Expect(4) = 1e-054
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 566 LNLECYQPDLHA 601
LN+ECYQPDL A
Sbjct: 482 LNVECYQPDLRA 517
Score = 27.2 bits (53), Expect(2) = 2e-023
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1 / +1
Query: 562 IA*SGMLPARSPCSXXS 612
IA GMLPARS CS S
Sbjct: 478 IAECGMLPARSACSIAS 528
Score = 26.3 bits (51), Expect(4) = 7e-029
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 611 LXXEHGDLAGSIP 573
L EH DLAGSIP
Sbjct: 527 LAMEHADLAGSIP 489
Score = 21.7 bits (41), Expect(4) = 1e-054
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +2
Query: 145 RRRLSRVCSAAAGEE 189
RRR RVC +AA E
Sbjct: 98 RRRRPRVCRSAAAGE 142
>gb|BE357918.1|BE357918 DG1_23_F06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 650
Score = 176 bits (379), Expect(4) = 2e-054
Identities = 60/66 (90%), Positives = 62/66 (93%)
Frame = +2 / +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC SRCS+TQY+KACLT CNKCCA CLCVPPGFYGNKGACPCYNNWKTKEG
Sbjct: 191 NLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCYNNWKTKEG 370
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 371 GPKCP* 388
Score = 103 bits (219), Expect(2) = 2e-023
Identities = 48/73 (65%), Positives = 52/73 (71%)
Frame = +1 / +1
Query: 241 QPESLGVLAQVRVAVLQDAVQEGLPHLM*QVLRQVPLRATGVXXXXXXXXXXXXXENQGR 420
QPE+LGVLAQVRVAVL DAVQEGLPHL+ QVLR VPLRA G+ E+QGR
Sbjct: 190 QPEALGVLAQVRVAVLADAVQEGLPHLLQQVLRHVPLRAAGLLRQQGRLPLLQQLEDQGR 369
Query: 421 RAQVPLEDPPQLP 459
RAQVPLE P P
Sbjct: 370 RAQVPLELDPHTP 408
Score = 85.8 bits (181), Expect(4) = 7e-029
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1 / -3
Query: 354 TQRHLAQHLLHKVRQAFLYCVLEHRDPHLGEHSQGFR 244
TQRH+AQHLL KVRQAFLYCV EHRD HLGEHSQGFR
Sbjct: 303 TQRHVAQHLLQKVRQAFLYCVCEHRDAHLGEHSQGFR 193
Score = 44.6 bits (91), Expect(4) = 2e-054
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +1 / +1
Query: 82 PTRTSDGDQGHLLPVARIPAPRRR 153
PTRTS G+QG L P ARIPAPRRR
Sbjct: 28 PTRTSYGEQGGLHPGARIPAPRRR 99
Score = 41.4 bits (84), Expect(4) = 7e-029
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -1
Query: 458 GSCGGSSRGTWALLPW 411
G CG SSRGTWALLPW
Sbjct: 407 GVCGSSSRGTWALLPW 360
Score = 29.9 bits (59), Expect(4) = 7e-029
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1 / -3
Query: 147 ARSRDASNRKQMTLVAIAR 91
ARSR+AS R + TL+AIAR
Sbjct: 93 ARSRNASTRMETTLLAIAR 37
Score = 29.5 bits (58), Expect(4) = 2e-054
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 566 LNLECYQPDLHA 601
LN+ECYQPDL A
Sbjct: 478 LNVECYQPDLRA 513
Score = 27.2 bits (53), Expect(2) = 2e-023
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 562 IA*SGMLPARSPCSXXS 612
IA GMLPARS CS S
Sbjct: 474 IAECGMLPARSACSIAS 524
Score = 26.3 bits (51), Expect(4) = 7e-029
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / -2
Query: 611 LXXEHGDLAGSIP 573
L EH DLAGSIP
Sbjct: 523 LAMEHADLAGSIP 485
Score = 21.7 bits (41), Expect(4) = 2e-054
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 145 RRRLSRVCSAAAGEE 189
RRR RVC +AA E
Sbjct: 94 RRRRPRVCRSAAAGE 138
>gb|CW301949.1|CW301949 104_786_11464467_116_35662_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464467, DNA
sequence
Length = 661
Score = 174 bits (375), Expect(2) = 2e-049
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC SRCS+TQY+KACLT CNKCCA CLCVPPGFYGNKGACPCYNNWKTKEG
Sbjct: 430 NLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCYNNWKTKEG 609
Query: 422 GPKCP* 439
GP+CP*
Sbjct: 610 GPQCP* 627
Score = 85.8 bits (181), Expect(3) = 8e-024
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1 / -3
Query: 354 TQRHLAQHLLHKVRQAFLYCVLEHRDPHLGEHSQGFR 244
TQRH+AQHLL KVRQAFLYCV EHRD HLGEHSQGFR
Sbjct: 542 TQRHVAQHLLQKVRQAFLYCVCEHRDAHLGEHSQGFR 432
Score = 44.6 bits (91), Expect(2) = 2e-049
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +1 / +3
Query: 82 PTRTSDGDQGHLLPVARIPAPRRR 153
PTRTS G+QG L P ARIPAPRRR
Sbjct: 168 PTRTSYGEQGGLHPGARIPAPRRR 239
Score = 35.4 bits (71), Expect(3) = 8e-024
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -2 / -1
Query: 458 GSCGGSSRGTWALLPW 411
G CG SSRGT ALLPW
Sbjct: 646 GVCGSSSRGTGALLPW 599
Score = 29.9 bits (59), Expect(3) = 8e-024
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1 / -3
Query: 147 ARSRDASNRKQMTLVAIAR 91
ARSR+AS R + TL+AIAR
Sbjct: 233 ARSRNASTRMETTLLAIAR 177
>gb|BE357990.1|BE357990 DG1_23_F06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 684
Score = 176 bits (379), Expect(4) = 3e-048
Identities = 60/66 (90%), Positives = 62/66 (93%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC SRCS+TQY+KACLT CNKCCA CLCVPPGFYGNKGACPCYNNWKTKEG
Sbjct: 121 NLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCYNNWKTKEG 300
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 301 GPKCP* 318
Score = 103 bits (219), Expect(2) = 2e-023
Identities = 48/73 (65%), Positives = 52/73 (71%)
Frame = +1 / +3
Query: 241 QPESLGVLAQVRVAVLQDAVQEGLPHLM*QVLRQVPLRATGVXXXXXXXXXXXXXENQGR 420
QPE+LGVLAQVRVAVL DAVQEGLPHL+ QVLR VPLRA G+ E+QGR
Sbjct: 120 QPEALGVLAQVRVAVLADAVQEGLPHLLQQVLRHVPLRAAGLLRQQGRLPLLQQLEDQGR 299
Query: 421 RAQVPLEDPPQLP 459
RAQVPLE P P
Sbjct: 300 RAQVPLELDPHTP 338
Score = 85.8 bits (181), Expect(3) = 4e-025
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1 / -2
Query: 354 TQRHLAQHLLHKVRQAFLYCVLEHRDPHLGEHSQGFR 244
TQRH+AQHLL KVRQAFLYCV EHRD HLGEHSQGFR
Sbjct: 233 TQRHVAQHLLQKVRQAFLYCVCEHRDAHLGEHSQGFR 123
Score = 41.4 bits (84), Expect(3) = 4e-025
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 458 GSCGGSSRGTWALLPW 411
G CG SSRGTWALLPW
Sbjct: 337 GVCGSSSRGTWALLPW 290
Score = 29.5 bits (58), Expect(4) = 3e-048
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 566 LNLECYQPDLHA 601
LN+ECYQPDL A
Sbjct: 408 LNVECYQPDLRA 443
Score = 27.2 bits (53), Expect(2) = 2e-023
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1 / +2
Query: 562 IA*SGMLPARSPCSXXS 612
IA GMLPARS CS S
Sbjct: 404 IAECGMLPARSACSIAS 454
Score = 26.3 bits (51), Expect(3) = 4e-025
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 611 LXXEHGDLAGSIP 573
L EH DLAGSIP
Sbjct: 453 LAMEHADLAGSIP 415
Score = 24.0 bits (46), Expect(4) = 3e-048
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 127 ARIPAPRRR 153
ARIPAPRRR
Sbjct: 3 ARIPAPRRR 29
Score = 21.7 bits (41), Expect(4) = 3e-048
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +3
Query: 145 RRRLSRVCSAAAGEE 189
RRR RVC +AA E
Sbjct: 24 RRRRPRVCRSAAAGE 68
>gb|CL168403.1|CL168403 104_366_10810792_148_31806_088 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810792, DNA
sequence
Length = 737
Score = 176 bits (379), Expect(2) = 5e-046
Identities = 60/66 (90%), Positives = 62/66 (93%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC SRCS+TQY+KACLT CNKCCA CLCVPPGFYGNKGACPCYNNWKTKEG
Sbjct: 115 NLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCYNNWKTKEG 294
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 295 GPKCP* 312
Score = 103 bits (219), Expect(2) = 2e-023
Identities = 48/73 (65%), Positives = 52/73 (71%)
Frame = +1 / +3
Query: 241 QPESLGVLAQVRVAVLQDAVQEGLPHLM*QVLRQVPLRATGVXXXXXXXXXXXXXENQGR 420
QPE+LGVLAQVRVAVL DAVQEGLPHL+ QVLR VPLRA G+ E+QGR
Sbjct: 114 QPEALGVLAQVRVAVLADAVQEGLPHLLQQVLRHVPLRAAGLLRQQGRLPLLQQLEDQGR 293
Query: 421 RAQVPLEDPPQLP 459
RAQVPLE P P
Sbjct: 294 RAQVPLELDPHTP 332
Score = 85.8 bits (181), Expect(3) = 4e-025
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1 / -1
Query: 354 TQRHLAQHLLHKVRQAFLYCVLEHRDPHLGEHSQGFR 244
TQRH+AQHLL KVRQAFLYCV EHRD HLGEHSQGFR
Sbjct: 227 TQRHVAQHLLQKVRQAFLYCVCEHRDAHLGEHSQGFR 117
Score = 41.4 bits (84), Expect(3) = 4e-025
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -2
Query: 458 GSCGGSSRGTWALLPW 411
G CG SSRGTWALLPW
Sbjct: 331 GVCGSSSRGTWALLPW 284
Score = 29.5 bits (58), Expect(2) = 5e-046
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 566 LNLECYQPDLHA 601
LN+ECYQPDL A
Sbjct: 402 LNVECYQPDLRA 437
Score = 27.2 bits (53), Expect(2) = 2e-023
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1 / +2
Query: 562 IA*SGMLPARSPCSXXS 612
IA GMLPARS CS S
Sbjct: 398 IAECGMLPARSACSIAS 448
Score = 26.3 bits (51), Expect(3) = 4e-025
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / -3
Query: 611 LXXEHGDLAGSIP 573
L EH DLAGSIP
Sbjct: 447 LAMEHADLAGSIP 409
>gb|CW443839.1|CW443839 fsbb001f164c12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164c12, DNA
sequence
Length = 721
Score = 176 bits (379), Expect(2) = 5e-046
Identities = 60/66 (90%), Positives = 62/66 (93%)
Frame = +2 / +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC SRCS+TQY+KACLT CNKCCA CLCVPPGFYGNKGACPCYNNWKTKEG
Sbjct: 146 NLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCYNNWKTKEG 325
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 326 GPKCP* 343
Score = 103 bits (219), Expect(2) = 2e-023
Identities = 48/73 (65%), Positives = 52/73 (71%)
Frame = +1 / +1
Query: 241 QPESLGVLAQVRVAVLQDAVQEGLPHLM*QVLRQVPLRATGVXXXXXXXXXXXXXENQGR 420
QPE+LGVLAQVRVAVL DAVQEGLPHL+ QVLR VPLRA G+ E+QGR
Sbjct: 145 QPEALGVLAQVRVAVLADAVQEGLPHLLQQVLRHVPLRAAGLLRQQGRLPLLQQLEDQGR 324
Query: 421 RAQVPLEDPPQLP 459
RAQVPLE P P
Sbjct: 325 RAQVPLELDPHTP 363
Score = 85.8 bits (181), Expect(3) = 4e-025
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1 / -2
Query: 354 TQRHLAQHLLHKVRQAFLYCVLEHRDPHLGEHSQGFR 244
TQRH+AQHLL KVRQAFLYCV EHRD HLGEHSQGFR
Sbjct: 258 TQRHVAQHLLQKVRQAFLYCVCEHRDAHLGEHSQGFR 148
Score = 41.4 bits (84), Expect(3) = 4e-025
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 458 GSCGGSSRGTWALLPW 411
G CG SSRGTWALLPW
Sbjct: 362 GVCGSSSRGTWALLPW 315
Score = 29.5 bits (58), Expect(2) = 5e-046
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 566 LNLECYQPDLHA 601
LN+ECYQPDL A
Sbjct: 433 LNVECYQPDLRA 468
Score = 27.2 bits (53), Expect(2) = 2e-023
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 562 IA*SGMLPARSPCSXXS 612
IA GMLPARS CS S
Sbjct: 429 IAECGMLPARSACSIAS 479
Score = 26.3 bits (51), Expect(3) = 4e-025
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 611 LXXEHGDLAGSIP 573
L EH DLAGSIP
Sbjct: 478 LAMEHADLAGSIP 440
>gb|BE358567.1|BE358567 DG1_31_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 176 bits (379), Expect(2) = 5e-046
Identities = 60/66 (90%), Positives = 62/66 (93%)
Frame = +2 / +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC SRCS+TQY+KACLT CNKCCA CLCVPPGFYGNKGACPCYNNWKTKEG
Sbjct: 68 NLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPCYNNWKTKEG 247
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 248 GPKCP* 265
Score = 103 bits (219), Expect(2) = 2e-023
Identities = 48/73 (65%), Positives = 52/73 (71%)
Frame = +1 / +1
Query: 241 QPESLGVLAQVRVAVLQDAVQEGLPHLM*QVLRQVPLRATGVXXXXXXXXXXXXXENQGR 420
QPE+LGVLAQVRVAVL DAVQEGLPHL+ QVLR VPLRA G+ E+QGR
Sbjct: 67 QPEALGVLAQVRVAVLADAVQEGLPHLLQQVLRHVPLRAAGLLRQQGRLPLLQQLEDQGR 246
Query: 421 RAQVPLEDPPQLP 459
RAQVPLE P P
Sbjct: 247 RAQVPLELDPHTP 285
Score = 85.8 bits (181), Expect(3) = 4e-025
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1 / -2
Query: 354 TQRHLAQHLLHKVRQAFLYCVLEHRDPHLGEHSQGFR 244
TQRH+AQHLL KVRQAFLYCV EHRD HLGEHSQGFR
Sbjct: 180 TQRHVAQHLLQKVRQAFLYCVCEHRDAHLGEHSQGFR 70
Score = 41.4 bits (84), Expect(3) = 4e-025
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 458 GSCGGSSRGTWALLPW 411
G CG SSRGTWALLPW
Sbjct: 284 GVCGSSSRGTWALLPW 237
Score = 29.5 bits (58), Expect(2) = 5e-046
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 566 LNLECYQPDLHA 601
LN+ECYQPDL A
Sbjct: 355 LNVECYQPDLRA 390
Score = 27.2 bits (53), Expect(2) = 2e-023
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 562 IA*SGMLPARSPCSXXS 612
IA GMLPARS CS S
Sbjct: 351 IAECGMLPARSACSIAS 401
Score = 26.3 bits (51), Expect(3) = 4e-025
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / -1
Query: 611 LXXEHGDLAGSIP 573
L EH DLAGSIP
Sbjct: 400 LAMEHADLAGSIP 362
>gb|CW270223.1|CW270223 104_741_11402291_148_35328_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402291, DNA
sequence
Length = 622
Score = 134 bits (288), Expect(2) = 1e-037
Identities = 45/51 (88%), Positives = 47/51 (92%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPC 394
NL PWECSPKC SRCS+TQY+KACLT CNKCCA CLCVPPGFYGNKGACPC
Sbjct: 469 NLKPWECSPKCASRCSQTQYKKACLTFCNKCCATCLCVPPGFYGNKGACPC 621
Score = 44.6 bits (91), Expect(2) = 1e-037
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +1 / +3
Query: 82 PTRTSDGDQGHLLPVARIPAPRRR 153
PTRTS G+QG L P ARIPAPRRR
Sbjct: 207 PTRTSYGEQGGLHPGARIPAPRRR 278
>gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 599
Score = 144 bits (308), Expect = 2e-033
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +2 / +3
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL P +C +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK G
Sbjct: 198 NLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRG 377
Query: 422 GPKCP*KIH 448
GPKCP* +H
Sbjct: 378 GPKCP*CMH 404
>gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_72_E06_A002 5', mRNA sequence
Length = 628
Score = 144 bits (308), Expect = 2e-033
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +2 / +3
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL P +C +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK G
Sbjct: 297 NLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRG 476
Query: 422 GPKCP*KIH 448
GPKCP* +H
Sbjct: 477 GPKCP*CMH 503
>gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 3', mRNA sequence
Length = 576
Score = 144 bits (308), Expect = 2e-033
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +2 / +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL P +C +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK G
Sbjct: 164 NLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRG 343
Query: 422 GPKCP*KIH 448
GPKCP* +H
Sbjct: 344 GPKCP*CMH 370
>gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 5', mRNA sequence
Length = 626
Score = 144 bits (308), Expect = 2e-033
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL P +C +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK G
Sbjct: 295 NLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRG 474
Query: 422 GPKCP*KIH 448
GPKCP* +H
Sbjct: 475 GPKCP*CMH 501
>gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C10_A002 5', mRNA sequence
Length = 521
Score = 144 bits (308), Expect = 2e-033
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +2 / -1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL P +C +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK G
Sbjct: 440 NLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRG 261
Query: 422 GPKCP*KIH 448
GPKCP* +H
Sbjct: 260 GPKCP*CMH 234
>gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_B10_A002 5', mRNA sequence
Length = 713
Score = 144 bits (308), Expect = 2e-033
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL P +C +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK G
Sbjct: 292 NLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRG 471
Query: 422 GPKCP*KIH 448
GPKCP* +H
Sbjct: 472 GPKCP*CMH 498
>gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_12_A09_A002 5', mRNA sequence
Length = 490
Score = 141 bits (302), Expect = 1e-032
Identities = 48/68 (70%), Positives = 53/68 (77%)
Frame = +2 / -3
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L P +C +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK GG
Sbjct: 437 LKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGG 258
Query: 425 PKCP*KIH 448
PKCP* +H
Sbjct: 257 PKCP*CMH 234
>gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_H04_A002 3', mRNA sequence
Length = 561
Score = 141 bits (302), Expect = 1e-032
Identities = 48/68 (70%), Positives = 53/68 (77%)
Frame = +2 / +2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L P +C +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK GG
Sbjct: 152 LKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGG 331
Query: 425 PKCP*KIH 448
PKCP* +H
Sbjct: 332 PKCP*CMH 355
>gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096662, DNA
sequence
Length = 551
Score = 138 bits (297), Expect = 6e-032
Identities = 47/64 (73%), Positives = 51/64 (79%)
Frame = +2 / -2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK GGPKCP
Sbjct: 310 ECGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGGPKCP 131
Query: 437 *KIH 448
* +H
Sbjct: 130 *CMH 119
>gb|CW387256.1|CW387256 fsbb001f071i10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071i10, DNA
sequence
Length = 696
Score = 137 bits (294), Expect = 1e-031
Identities = 45/61 (73%), Positives = 49/61 (80%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
ECSP+C RC T+Y+K CL CNKCC CLCVP G+YGNKG CPCYNNWKTK GGPKCP
Sbjct: 256 ECSPQCSRRCGNTRYKKPCLFFCNKCCNTCLCVPSGYYGNKGECPCYNNWKTKRGGPKCP 435
Query: 437 * 439
*
Sbjct: 436 * 438
>gb|BE355997.1|BE355997 DG1_121_G12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 137 bits (294), Expect = 1e-031
Identities = 45/61 (73%), Positives = 49/61 (80%)
Frame = +2 / +3
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
ECSP+C RC T+Y+K CL CNKCC CLCVP G+YGNKG CPCYNNWKTK GGPKCP
Sbjct: 90 ECSPQCSRRCGNTRYKKPCLFFCNKCCNTCLCVPSGYYGNKGECPCYNNWKTKRGGPKCP 269
Query: 437 * 439
*
Sbjct: 270 * 272
>gb|CF484658.1|CF484658 POL1_26_E07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_26_E07_A002 5', mRNA sequence
Length = 532
Score = 136 bits (291), Expect = 4e-031
Identities = 47/69 (68%), Positives = 52/69 (75%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL P +C +C RCSKT ++K CL CNK CA CLCVPPG YGNK CPCYNNWKTK G
Sbjct: 304 NLKPSQCGGECKRRCSKTHHKKPCLFFCNKXCAXCLCVPPGTYGNKDTCPCYNNWKTKRG 483
Query: 422 GPKCP*KIH 448
GPKCP* +H
Sbjct: 484 GPKCP*CMH 510
>gb|CF488807.1|CF488807 POL1_52_G10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_52_G10_A002 3', mRNA sequence
Length = 617
Score = 130 bits (279), Expect = 2e-029
Identities = 44/56 (78%), Positives = 47/56 (83%)
Frame = +2 / +1
Query: 281 RCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP*KIH 448
RCSKT ++K CL CNKCCAKCLCVPPG YGNK CPCYNNWKTK GGPKCP* +H
Sbjct: 271 RCSKTHHKKPCLLFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGGPKCP*CMH 438
>gb|BZ335127.1|BZ335127 hx95f10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx95f10 5', DNA sequence
Length = 670
Score = 130 bits (278), Expect = 2e-029
Identities = 44/61 (72%), Positives = 46/61 (75%)
Frame = +2 / -2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C +RCS T YRK CL C KCCA CLCVP G YGNK CPCYNNWKTK GGPKCP
Sbjct: 462 ECGGRCAARCSATAYRKPCLFFCRKCCATCLCVPAGTYGNKNTCPCYNNWKTKRGGPKCP 283
Query: 437 * 439
*
Sbjct: 282 * 280
>gb|CW226517.1|CW226517 104_664_11204928_148_37221_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204928, DNA
sequence
Length = 679
Score = 130 bits (278), Expect = 2e-029
Identities = 44/61 (72%), Positives = 46/61 (75%)
Frame = +2 / -1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C +RCS T YRK CL C KCCA CLCVP G YGNK CPCYNNWKTK GGPKCP
Sbjct: 235 ECGGRCAARCSATAYRKPCLFFCRKCCATCLCVPAGTYGNKNTCPCYNNWKTKRGGPKCP 56
Query: 437 * 439
*
Sbjct: 55 * 53
>gb|CW356428.1|CW356428 fsbb001f021i03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021i03, DNA
sequence
Length = 676
Score = 102 bits (217), Expect = 6e-021
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +2 / -1
Query: 314 LTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP*KIH 448
L L +CCAKCLCVPPG YGNK CPCYNNWKTK GGPKCP* +H
Sbjct: 607 LLLQTRCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGGPKCP*CMH 473
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 588,009,878
Number of Sequences: 832831
Number of extensions: 7563953
Number of successful extensions: 94119
Number of sequences better than 1.0e-020: 26
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 19366630166
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)