TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805202.2.1
(1139 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/c... 308 1e-082
gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkal... 308 1e-082
gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated ... 291 1e-077
gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 ... 281 2e-074
gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infecte... 233 3e-060
gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorgh... 158 5e-060
gb|CL166425.1|CL166425 104_362_10809365_116_31799_197 Sorgh... 106 1e-058
gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkal... 215 7e-055
gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/c... 204 2e-051
gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Me... 198 2e-049
gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) So... 190 3e-047
gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle... 168 2e-040
gb|CL166424.1|CL166424 104_362_10809365_114_31798_197 Sorgh... 106 2e-029
gb|CW181650.1|CW181650 104_596_11163625_116_36651_003 Sorgh... 89 5e-025
gb|CW190211.1|CW190211 104_611_11174383_148_36750_020 Sorgh... 116 9e-025
gb|CW451391.1|CW451391 fsbb001f191h03f0 Sorghum methylation... 78 9e-025
gb|CW113797.1|CW113797 104_488_11105645_116_34559_027 Sorgh... 115 1e-024
gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated ... 115 1e-024
gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 ... 112 8e-024
gb|CW329729.1|CW329729 104_826_11479998_148_35997_025 Sorgh... 81 8e-023
gb|CW488973.1|CW488973 fsbb001f265k08f0 Sorghum methylation... 61 1e-022
gb|CW223489.1|CW223489 104_659_11202943_148_37190_026 Sorgh... 61 1e-022
gb|CW366119.1|CW366119 fsbb001f038p12f0 Sorghum methylation... 61 1e-022
gb|CW473388.1|CW473388 fsbb001f228l19f0 Sorghum methylation... 61 1e-022
>gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 5', mRNA sequence
Length = 660
Score = 308 bits (667), Expect = 1e-082
Identities = 120/172 (69%), Positives = 144/172 (83%)
Frame = -3 / +3
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
SFLKVL NN DVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFITLFELTFA
Sbjct: 87 SFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 266
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRP 532
P++EWLPFWSYAKLFFNCWLVLP FNGAA+VY+HFVRP VN+Q+VNIWY+P+ ++ +
Sbjct: 267 PIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKS 446
Query: 531 DDVISAAQRYIEQNGSKAFENLVNKFKSSNPRRSILEEVEVERRARIQLESE 376
DDV+SAA+RYIEQNG +AFE L++K S+ R+ + E A + ++E
Sbjct: 447 DDVLSAAERYIEQNGPEAFEKLISKSTKSSKSRNTKRSILEEAEAENRAKAE 602
Score = 214 bits (462), Expect(2) = 4e-056
Identities = 100/148 (67%), Positives = 110/148 (74%)
Frame = +2 / -3
Query: 446 ELLNLLTRFSNAFDPFCSMYLCAAEITSSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTC 625
+ ++LL FSNA PFCS+YL AA+ TSS L SF G Y MFT FT +G TK S T
Sbjct: 532 DFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS*T* 353
Query: 626 AAPLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVINEYSTQYVSHC*SSTADFVSIA 805
AAPLN G TNQQLKN+FA DQ GSHS GAKVSSN+VINEY+TQ VSHC SST VSIA
Sbjct: 352 AAPLNQGKTNQQLKNNFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLVSIA 173
Query: 806 LTEAYRGYASETKGPARTSMLLTKTLRK 889
LTEAYRGYAS+ GPARTS LL TLRK
Sbjct: 172 LTEAYRGYASDMSGPARTSKLLASTLRK 89
Score = 130 bits (279), Expect(3) = 7e-037
Identities = 58/110 (52%), Positives = 76/110 (69%)
Frame = -2 / +2
Query: 784 CG*SAMAHVLGAVLIYHSIRAHLCSGTRMASFLVLCKAVLQLLVSIATVQWSCTCI*AFC 605
C * A+AH+LG VLIYH + A+ CS R+AS LV+CK VL LLV + VQW C C+ FC
Sbjct: 194 CR*PAVAHLLGVVLIYHFV*ANFCSNYRVASILVICKVVL*LLVGLTLVQWCCLCLRPFC 373
Query: 604 EANDCKSASCKHLVYSKEG*IK*T**CNFSCTEVH*AKWIKSV*ESC*QV 455
AN C+ + +H+V SKE +* **C+ SC E++*AKW S+*E+ QV
Sbjct: 374 AANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQV 523
Score = 119 bits (255), Expect = 7e-026
Identities = 65/128 (50%), Positives = 75/128 (58%)
Frame = +3 / -1
Query: 453 *TC*QDSQTLLIHFAQCTSVQLKLHHQVYLIHPSLEYTRCXXXXXXXXXXXXNAHIHVQL 632
*TC* SQ L +HFAQ S+QL HHQ+YL SLE+T C N H Q
Sbjct: 525 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 346
Query: 633 H*TVAILTSN*RTALHKTRKEAIRVPEQR*ARIE**MSTAPST*AIADHPQQILFQLL*Q 812
H*T TS+*RT LH T+ EA R EQ+ A+ +**MST PS *A A H Q LL*Q
Sbjct: 345 H*TKVRPTSS*RTTLHMTKMEATR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*Q 166
Query: 813 RHTEDTQV 836
+H ED QV
Sbjct: 165 KHIEDMQV 142
Score = 112 bits (239), Expect(3) = 3e-029
Identities = 68/149 (45%), Positives = 82/149 (55%)
Frame = -1 / +1
Query: 896 PDLXXXXXXXXXXXXRGLWFHLRILCMPLLEQLKQNLLWMISNGSRTGCCTHXXXXXXXX 717
PDL +G +HL IL M LLEQ + +L M S+GS TGCCTH
Sbjct: 82 PDLSSRCWLTTSMS*QGHSYHLHILYMLLLEQ*RPKIL*MTSSGSLTGCCTHLSLCLS*L 261
Query: 716 XXXXSNGFLSGLMQSCSSIAG*YCHSSMELHMYMSIL*GQ*L*ISKL*TSGIFQRRMNQV 537
S+GF G MQSCS AG SM L M+ +IL GQ L* +K *T G+FQ + V
Sbjct: 262 LLQLSSGFHFGHMQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAK**TYGMFQGMRS*V 441
Query: 536 DLMM*FQLHRGTLSKMDQKRLRILLTSLR 450
+LMM QL R LSKMD+K LR SL+
Sbjct: 442 NLMMFCQLQRDILSKMDRKHLRSSSASLQ 528
Score = 99.6 bits (211), Expect(2) = 8e-038
Identities = 49/81 (60%), Positives = 57/81 (70%)
Frame = +1 / -2
Query: 655 PAIEEQLCIRPERKPFEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNCSNRGIQRIRK 834
PA++EQLCI P+ KP + SK L+ SDK*VQHPV EPLL+I+ F CSNR I RI K
Sbjct: 323 PAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNRSI*RICK 144
Query: 835 *NQRPREDIHVVDQDLEERSG 897
* + P DI VV Q LEERSG
Sbjct: 143 *YEWPC*DIEVVSQHLEERSG 81
Score = 79.9 bits (168), Expect(2) = 8e-038
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +1 / -2
Query: 445 RTLKLVNKILKRF*SILLNVPLCS*NYIIRST*FILLWNIPDVYNLLIYNHWPHKMLIYM 624
R +L +++LK F SILLN+ LCS* IIR T* ++ WNIP V+ L ++ WPHKM++ +
Sbjct: 533 RLCRLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNI 354
Query: 625 CSSIE 639
S+IE
Sbjct: 353 SSTIE 339
Score = 35.4 bits (71), Expect(3) = 7e-037
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -3 / +3
Query: 453 KSSNPRRSILEEVEVERRARIQLES 379
KS N +RSILEE E E RA+ + ES
Sbjct: 537 KSRNTKRSILEEAEAENRAKAERES 611
Score = 30.9 bits (61), Expect(3) = 3e-029
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3 / +3
Query: 414 EVERRARIQLESEAREVNPFFNPEYQY*AT 325
E E R + E E+ + NPF++ Y+Y* T
Sbjct: 570 EAEAENRAKAERESWDENPFYDKNYRY*TT 659
Score = 28.1 bits (55), Expect(3) = 7e-037
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 898 IRIFPQGLGQQHGCPRGAFGFT 833
+RIFPQG G Q CP A T
Sbjct: 80 VRIFPQGAG*QLRCPSRATHIT 145
Score = 26.3 bits (51), Expect(2) = 4e-056
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / -1
Query: 405 FQPLPPPELSALGS 446
FQPLPPP +AL S
Sbjct: 585 FQPLPPPRSTALCS 544
Score = 25.4 bits (49), Expect(3) = 3e-029
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2 / +2
Query: 445 EPKALNSGGGRG*KE 401
E KA++ GGGRG*K+
Sbjct: 545 EHKAVDLGGGRG*KQ 589
>gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_D12_A002 5', mRNA sequence
Length = 760
Score = 308 bits (667), Expect = 1e-082
Identities = 120/172 (69%), Positives = 144/172 (83%)
Frame = -3 / +1
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
SFLKVL NN DVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFITLFELTFA
Sbjct: 79 SFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 258
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRP 532
P++EWLPFWSYAKLFFNCWLVLP FNGAA+VY+HFVRP VN+Q+VNIWY+P+ ++ +
Sbjct: 259 PIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKS 438
Query: 531 DDVISAAQRYIEQNGSKAFENLVNKFKSSNPRRSILEEVEVERRARIQLESE 376
DDV+SAA+RYIEQNG +AFE L++K S+ R+ + E A + ++E
Sbjct: 439 DDVLSAAERYIEQNGPEAFEKLISKSTKSSKSRNTKRSILEEAEAENRAKAE 594
Score = 214 bits (462), Expect(2) = 4e-056
Identities = 100/148 (67%), Positives = 110/148 (74%)
Frame = +2 / -3
Query: 446 ELLNLLTRFSNAFDPFCSMYLCAAEITSSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTC 625
+ ++LL FSNA PFCS+YL AA+ TSS L SF G Y MFT FT +G TK S T
Sbjct: 524 DFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS*T* 345
Query: 626 AAPLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVINEYSTQYVSHC*SSTADFVSIA 805
AAPLN G TNQQLKN+FA DQ GSHS GAKVSSN+VINEY+TQ VSHC SST VSIA
Sbjct: 344 AAPLNQGKTNQQLKNNFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLVSIA 165
Query: 806 LTEAYRGYASETKGPARTSMLLTKTLRK 889
LTEAYRGYAS+ GPARTS LL TLRK
Sbjct: 164 LTEAYRGYASDMSGPARTSKLLASTLRK 81
Score = 130 bits (279), Expect(3) = 7e-037
Identities = 58/110 (52%), Positives = 76/110 (69%)
Frame = -2 / +3
Query: 784 CG*SAMAHVLGAVLIYHSIRAHLCSGTRMASFLVLCKAVLQLLVSIATVQWSCTCI*AFC 605
C * A+AH+LG VLIYH + A+ CS R+AS LV+CK VL LLV + VQW C C+ FC
Sbjct: 186 CR*PAVAHLLGVVLIYHFV*ANFCSNYRVASILVICKVVL*LLVGLTLVQWCCLCLRPFC 365
Query: 604 EANDCKSASCKHLVYSKEG*IK*T**CNFSCTEVH*AKWIKSV*ESC*QV 455
AN C+ + +H+V SKE +* **C+ SC E++*AKW S+*E+ QV
Sbjct: 366 AANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQV 515
Score = 119 bits (255), Expect = 7e-026
Identities = 65/128 (50%), Positives = 75/128 (58%)
Frame = +3 / -1
Query: 453 *TC*QDSQTLLIHFAQCTSVQLKLHHQVYLIHPSLEYTRCXXXXXXXXXXXXNAHIHVQL 632
*TC* SQ L +HFAQ S+QL HHQ+YL SLE+T C N H Q
Sbjct: 517 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 338
Query: 633 H*TVAILTSN*RTALHKTRKEAIRVPEQR*ARIE**MSTAPST*AIADHPQQILFQLL*Q 812
H*T TS+*RT LH T+ EA R EQ+ A+ +**MST PS *A A H Q LL*Q
Sbjct: 337 H*TKVRPTSS*RTTLHMTKMEATR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*Q 158
Query: 813 RHTEDTQV 836
+H ED QV
Sbjct: 157 KHIEDMQV 134
Score = 112 bits (239), Expect(3) = 3e-029
Identities = 68/149 (45%), Positives = 82/149 (55%)
Frame = -1 / +2
Query: 896 PDLXXXXXXXXXXXXRGLWFHLRILCMPLLEQLKQNLLWMISNGSRTGCCTHXXXXXXXX 717
PDL +G +HL IL M LLEQ + +L M S+GS TGCCTH
Sbjct: 74 PDLSSRCWLTTSMS*QGHSYHLHILYMLLLEQ*RPKIL*MTSSGSLTGCCTHLSLCLS*L 253
Query: 716 XXXXSNGFLSGLMQSCSSIAG*YCHSSMELHMYMSIL*GQ*L*ISKL*TSGIFQRRMNQV 537
S+GF G MQSCS AG SM L M+ +IL GQ L* +K *T G+FQ + V
Sbjct: 254 LLQLSSGFHFGHMQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAK**TYGMFQGMRS*V 433
Query: 536 DLMM*FQLHRGTLSKMDQKRLRILLTSLR 450
+LMM QL R LSKMD+K LR SL+
Sbjct: 434 NLMMFCQLQRDILSKMDRKHLRSSSASLQ 520
Score = 99.6 bits (211), Expect(2) = 8e-038
Identities = 49/81 (60%), Positives = 57/81 (70%)
Frame = +1 / -2
Query: 655 PAIEEQLCIRPERKPFEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNCSNRGIQRIRK 834
PA++EQLCI P+ KP + SK L+ SDK*VQHPV EPLL+I+ F CSNR I RI K
Sbjct: 315 PAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNRSI*RICK 136
Query: 835 *NQRPREDIHVVDQDLEERSG 897
* + P DI VV Q LEERSG
Sbjct: 135 *YEWPC*DIEVVSQHLEERSG 73
Score = 79.9 bits (168), Expect(2) = 8e-038
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +1 / -2
Query: 445 RTLKLVNKILKRF*SILLNVPLCS*NYIIRST*FILLWNIPDVYNLLIYNHWPHKMLIYM 624
R +L +++LK F SILLN+ LCS* IIR T* ++ WNIP V+ L ++ WPHKM++ +
Sbjct: 525 RLCRLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNI 346
Query: 625 CSSIE 639
S+IE
Sbjct: 345 SSTIE 331
Score = 35.4 bits (71), Expect(3) = 7e-037
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -3 / +1
Query: 453 KSSNPRRSILEEVEVERRARIQLES 379
KS N +RSILEE E E RA+ + ES
Sbjct: 529 KSRNTKRSILEEAEAENRAKAERES 603
Score = 30.9 bits (61), Expect(3) = 3e-029
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3 / +1
Query: 414 EVERRARIQLESEAREVNPFFNPEYQY*AT 325
E E R + E E+ + NPF++ Y+Y* T
Sbjct: 562 EAEAENRAKAERESWDENPFYDKNYRY*TT 651
Score = 28.1 bits (55), Expect(3) = 7e-037
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2 / +3
Query: 898 IRIFPQGLGQQHGCPRGAFGFT 833
+RIFPQG G Q CP A T
Sbjct: 72 VRIFPQGAG*QLRCPSRATHIT 137
Score = 26.3 bits (51), Expect(2) = 4e-056
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / -1
Query: 405 FQPLPPPELSALGS 446
FQPLPPP +AL S
Sbjct: 577 FQPLPPPRSTALCS 536
Score = 25.4 bits (49), Expect(3) = 3e-029
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2 / +3
Query: 445 EPKALNSGGGRG*KE 401
E KA++ GGGRG*K+
Sbjct: 537 EHKAVDLGGGRG*KQ 581
>gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 5', mRNA sequence
Length = 580
Score = 291 bits (630), Expect = 1e-077
Identities = 111/139 (79%), Positives = 127/139 (91%)
Frame = -3 / +1
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
SFLKVL NN DVLAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFITLFELTFA
Sbjct: 163 SFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 342
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRP 532
P++EWLPFWSYAKLFFNCWLVLP FNGAA+VY+HFVRP VN+ +VNIWY+P+ ++ +
Sbjct: 343 PIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRXIVNIWYVPRNEKLGKS 522
Query: 531 DDVISAAQRYIEQNGSKAF 475
DDV+SAA+RYIEQNG +AF
Sbjct: 523 DDVLSAAERYIEQNGPEAF 579
Score = 205 bits (442), Expect = 1e-051
Identities = 96/138 (69%), Positives = 103/138 (74%)
Frame = +2 / -3
Query: 476 NAFDPFCSMYLCAAEITSSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTCAAPLNCGNTN 655
NA PFCS+YL AA+ TSS L SF G Y MFT FT +G TK S T AAPLN G TN
Sbjct: 578 NASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIXRFTNVGRTKWS*T*AAPLNQGKTN 399
Query: 656 QQLKNSFA*DQKGSHSSTGAKVSSNRVINEYSTQYVSHC*SSTADFVSIALTEAYRGYAS 835
QQLKN+FA DQ GSHS GAKVSSN+VINEY+TQ VSHC SST VSIALTEAYRGYAS
Sbjct: 398 QQLKNNFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLVSIALTEAYRGYAS 219
Query: 836 ETKGPARTSMLLTKTLRK 889
+ GPARTS LL TLRK
Sbjct: 218 DMSGPARTSKLLASTLRK 165
Score = 126 bits (270), Expect(2) = 2e-030
Identities = 54/103 (52%), Positives = 71/103 (68%)
Frame = -2 / +3
Query: 784 CG*SAMAHVLGAVLIYHSIRAHLCSGTRMASFLVLCKAVLQLLVSIATVQWSCTCI*AFC 605
C * A+AH+LG VLIYH + A+ CS R+AS LV+CK VL LLV + VQW C C+ FC
Sbjct: 270 CR*PAVAHLLGVVLIYHFV*ANFCSNYRVASILVICKVVL*LLVGLTLVQWCCLCLRPFC 449
Query: 604 EANDCKSASCKHLVYSKEG*IK*T**CNFSCTEVH*AKWIKSV 476
AN C+ + +H+V SKE +* **C+ SC E++*AKW S+
Sbjct: 450 AANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI 578
Score = 113 bits (241), Expect = 6e-024
Identities = 61/121 (50%), Positives = 71/121 (58%)
Frame = +3 / -1
Query: 474 QTLLIHFAQCTSVQLKLHHQVYLIHPSLEYTRCXXXXXXXXXXXXNAHIHVQLH*TVAIL 653
Q L +HFAQ S+QL HHQ+YL SLE+T C N H Q H*T
Sbjct: 580 QMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLXGGSQTLAAQNGRKHKQHH*TKVRP 401
Query: 654 TSN*RTALHKTRKEAIRVPEQR*ARIE**MSTAPST*AIADHPQQILFQLL*QRHTEDTQ 833
TS+*RT LH T+ EA R EQ+ A+ +**MST PS *A A H Q LL*Q+H ED Q
Sbjct: 400 TSS*RTTLHMTKMEATR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*QKHIEDMQ 221
Query: 834 V 836
V
Sbjct: 220 V 218
Score = 105 bits (225), Expect = 9e-022
Identities = 64/141 (45%), Positives = 77/141 (54%)
Frame = -1 / +2
Query: 896 PDLXXXXXXXXXXXXRGLWFHLRILCMPLLEQLKQNLLWMISNGSRTGCCTHXXXXXXXX 717
PDL +G +HL IL M LLEQ + +L M S+GS TGCCTH
Sbjct: 158 PDLSSRCWLTTSMS*QGHSYHLHILYMLLLEQ*RPKIL*MTSSGSLTGCCTHLSLCLS*L 337
Query: 716 XXXXSNGFLSGLMQSCSSIAG*YCHSSMELHMYMSIL*GQ*L*ISKL*TSGIFQRRMNQV 537
S+GF G MQSCS AG SM L M+ +IL GQ L* + *T G+FQ + V
Sbjct: 338 LLQLSSGFHFGHMQSCSLTAGWSYLGSMVLLMFTTILCGQRL*TAX**TYGMFQGMRS*V 517
Query: 536 DLMM*FQLHRGTLSKMDQKRL 474
+LMM QL R LSKMD+K L
Sbjct: 518 NLMMFCQLQRDILSKMDRKHL 580
Score = 99.6 bits (211), Expect(2) = 8e-035
Identities = 49/81 (60%), Positives = 57/81 (70%)
Frame = +1 / -2
Query: 655 PAIEEQLCIRPERKPFEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNCSNRGIQRIRK 834
PA++EQLCI P+ KP + SK L+ SDK*VQHPV EPLL+I+ F CSNR I RI K
Sbjct: 399 PAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNRSI*RICK 220
Query: 835 *NQRPREDIHVVDQDLEERSG 897
* + P DI VV Q LEERSG
Sbjct: 219 *YEWPC*DIEVVSQHLEERSG 157
Score = 69.8 bits (146), Expect(2) = 8e-035
Identities = 29/55 (52%), Positives = 39/55 (70%)
Frame = +1 / -2
Query: 475 KRF*SILLNVPLCS*NYIIRST*FILLWNIPDVYNLLIYNHWPHKMLIYMCSSIE 639
K F SILLN+ LCS* IIR T* ++ WNIP V+ ++ WPHKM++ + S+IE
Sbjct: 579 KCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYXAVHKRWPHKMVVNISSTIE 415
Score = 28.1 bits (55), Expect(2) = 2e-030
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2 / +3
Query: 898 IRIFPQGLGQQHGCPRGAFGFT 833
+RIFPQG G Q CP A T
Sbjct: 156 VRIFPQGAG*QLRCPSRATHIT 221
>gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 281 bits (607), Expect = 2e-074
Identities = 106/141 (75%), Positives = 126/141 (89%)
Frame = -3 / +2
Query: 852 AGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFAPVLEWLPFWSYAK 673
AGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFITLFELTFAP++EWLPFWSYAK
Sbjct: 8 AGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLPFWSYAK 187
Query: 672 LFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRPDDVISAAQRYIEQ 493
LFFNCWLVLP FNGAA+VY+HFVRP VN+Q+VNIWY+P+ ++ + DDV+SAA+RYIEQ
Sbjct: 188 LFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKSDDVLSAAERYIEQ 367
Query: 492 NGSKAFENLVNKFKSSNPRRS 430
NG +AFE L++K S+ R+
Sbjct: 368 NGPEAFEKLISKSTKSSKSRN 430
Score = 196 bits (422), Expect = 6e-049
Identities = 91/136 (66%), Positives = 101/136 (74%)
Frame = +2 / -2
Query: 446 ELLNLLTRFSNAFDPFCSMYLCAAEITSSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTC 625
+ ++LL FSNA PFCS+YL AA+ TSS L SF G Y MFT FT +G TK S T
Sbjct: 414 DFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS*T* 235
Query: 626 AAPLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVINEYSTQYVSHC*SSTADFVSIA 805
AAPLN G TNQQLKN+FA DQ GSHS GAKVSSN+VINEY+TQ VSHC SST VSIA
Sbjct: 234 AAPLNQGKTNQQLKNNFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLVSIA 55
Query: 806 LTEAYRGYASETKGPA 853
LTEAYRGYAS+ GPA
Sbjct: 54 LTEAYRGYASDMSGPA 7
Score = 130 bits (279), Expect = 3e-029
Identities = 58/110 (52%), Positives = 76/110 (69%)
Frame = -2 / +1
Query: 784 CG*SAMAHVLGAVLIYHSIRAHLCSGTRMASFLVLCKAVLQLLVSIATVQWSCTCI*AFC 605
C * A+AH+LG VLIYH + A+ CS R+AS LV+CK VL LLV + VQW C C+ FC
Sbjct: 76 CR*PAVAHLLGVVLIYHFV*ANFCSNYRVASILVICKVVL*LLVGLTLVQWCCLCLRPFC 255
Query: 604 EANDCKSASCKHLVYSKEG*IK*T**CNFSCTEVH*AKWIKSV*ESC*QV 455
AN C+ + +H+V SKE +* **C+ SC E++*AKW S+*E+ QV
Sbjct: 256 AANVCEPPNSEHMVCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQV 405
Score = 119 bits (255), Expect = 7e-026
Identities = 65/128 (50%), Positives = 75/128 (58%)
Frame = +3 / -3
Query: 453 *TC*QDSQTLLIHFAQCTSVQLKLHHQVYLIHPSLEYTRCXXXXXXXXXXXXNAHIHVQL 632
*TC* SQ L +HFAQ S+QL HHQ+YL SLE+T C N H Q
Sbjct: 407 *TC**ASQMLPVHFAQYISLQLTEHHQIYLASHSLEHTICSLFGGSQTLAAQNGRKHKQH 228
Query: 633 H*TVAILTSN*RTALHKTRKEAIRVPEQR*ARIE**MSTAPST*AIADHPQQILFQLL*Q 812
H*T TS+*RT LH T+ EA R EQ+ A+ +**MST PS *A A H Q LL*Q
Sbjct: 227 H*TKVRPTSS*RTTLHMTKMEATR*LEQKLAQTK**MSTTPSK*ATAGHLQDFWSLLL*Q 48
Query: 813 RHTEDTQV 836
+H ED QV
Sbjct: 47 KHIEDMQV 24
Score = 110 bits (234), Expect = 5e-023
Identities = 64/130 (49%), Positives = 77/130 (59%)
Frame = -1 / +3
Query: 839 FHLRILCMPLLEQLKQNLLWMISNGSRTGCCTHXXXXXXXXXXXXSNGFLSGLMQSCSSI 660
+HL IL M LLEQ + +L M S+GS TGCCTH S+GF G MQSCS
Sbjct: 21 YHLHILYMLLLEQ*RPKIL*MTSSGSLTGCCTHLSLCLS*LLLQLSSGFHFGHMQSCSLT 200
Query: 659 AG*YCHSSMELHMYMSIL*GQ*L*ISKL*TSGIFQRRMNQVDLMM*FQLHRGTLSKMDQK 480
AG SM L M+ +IL GQ L* +K *T G+FQ + V+LMM QL R LSKMD+K
Sbjct: 201 AGWSYLGSMVLLMFTTILCGQRL*TAK**TYGMFQGMRS*VNLMMFCQLQRDILSKMDRK 380
Query: 479 RLRILLTSLR 450
LR SL+
Sbjct: 381 HLRSSSASLQ 410
Score = 79.9 bits (168), Expect(2) = 8e-032
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +1 / -1
Query: 445 RTLKLVNKILKRF*SILLNVPLCS*NYIIRST*FILLWNIPDVYNLLIYNHWPHKMLIYM 624
R +L +++LK F SILLN+ LCS* IIR T* ++ WNIP V+ L ++ WPHKM++ +
Sbjct: 415 RLCRLADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNI 236
Query: 625 CSSIE 639
S+IE
Sbjct: 235 SSTIE 221
Score = 79.4 bits (167), Expect(2) = 8e-032
Identities = 38/65 (58%), Positives = 46/65 (70%)
Frame = +1 / -1
Query: 655 PAIEEQLCIRPERKPFEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNCSNRGIQRIRK 834
PA++EQLCI P+ KP + SK L+ SDK*VQHPV EPLL+I+ F CSNR I RI K
Sbjct: 205 PAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNRSI*RICK 26
Query: 835 *NQRP 849
* + P
Sbjct: 25 *YEWP 11
>gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 456
Score = 233 bits (504), Expect = 3e-060
Identities = 91/110 (82%), Positives = 99/110 (90%)
Frame = -3 / +1
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
SFLKVL NN DVLA PL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFITLFELTFA
Sbjct: 127 SFLKVLANNFDVLARPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFA 306
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWY 562
P++EWLPFW+YAKLFFNCWL LP NGAA+VYEHFVRP VN+Q+ NI Y
Sbjct: 307 PIIEWLPFWTYAKLFFNCWLALPWINGAAYVYEHFVRPTFVNRQIENISY 456
Score = 158 bits (340), Expect = 1e-037
Identities = 75/109 (68%), Positives = 81/109 (74%)
Frame = +2 / -2
Query: 563 YQMFTTC*FTIIGLTKCSYTCAAPLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVIN 742
Y MF+ FT +G TKCS T AAPL G NQQLKN+FA Q GSHS GAKVSSN+VIN
Sbjct: 455 YDMFSIWRFTNVGRTKCS*T*AAPLIQGKANQQLKNNFAYVQNGSHSIIGAKVSSNKVIN 276
Query: 743 EYSTQYVSHC*SSTADFVSIALTEAYRGYASETKGPARTSMLLTKTLRK 889
EY+TQ VSHC SST VSIALTEAYRGYAS+ G ARTS LL TLRK
Sbjct: 275 EYNTQ*VSHCWSSTGFLVSIALTEAYRGYASDMSGRARTSKLLASTLRK 129
Score = 100 bits (212), Expect(2) = 2e-023
Identities = 49/81 (60%), Positives = 57/81 (70%)
Frame = +1 / -1
Query: 655 PAIEEQLCIRPERKPFEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNCSNRGIQRIRK 834
PA++EQLCI P+ KP + SK L+ SDK*VQHPV EPLL+I+ F CSNR I RI K
Sbjct: 363 PAVKEQLCICPKWKPLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNRSI*RICK 184
Query: 835 *NQRPREDIHVVDQDLEERSG 897
* + P DI VV Q LEERSG
Sbjct: 183 *YEWPC*DIEVVSQHLEERSG 121
Score = 30.9 bits (61), Expect(2) = 2e-023
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1 / -1
Query: 571 VYNLLIYNHWPHKMLIYMCSSIE 639
V L ++ WPHKML+ + S+I+
Sbjct: 447 VLYLAVHKRWPHKMLVNISSTID 379
>gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152669, DNA
sequence
Length = 690
Score = 158 bits (340), Expect(2) = 5e-060
Identities = 57/80 (71%), Positives = 71/80 (88%)
Frame = -3 / +3
Query: 696 LPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRPDDVIS 517
LPFWSYAKLFFNCWLVLP FNGAA+VY+HFVRP VN+Q+VNIWY+P+ ++ + DDV+S
Sbjct: 360 LPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKSDDVLS 539
Query: 516 AAQRYIEQNGSKAFENLVNK 457
AA+RYIEQNG +AFE L++K
Sbjct: 540 AAERYIEQNGPEAFEKLISK 599
Score = 105 bits (225), Expect(2) = 2e-036
Identities = 51/80 (63%), Positives = 55/80 (68%)
Frame = +2 / -3
Query: 458 LLTRFSNAFDPFCSMYLCAAEITSSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTCAAPL 637
LL FSNA PFCS+YL AA+ TSS L SF G Y MFT FT +G TK S T AAPL
Sbjct: 598 LLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS*T*AAPL 419
Query: 638 NCGNTNQQLKNSFA*DQKGS 697
N G TNQQLKN+FA DQ GS
Sbjct: 418 NQGKTNQQLKNNFAYDQNGS 359
Score = 97.7 bits (207), Expect(2) = 5e-060
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = -3 / +3
Query: 819 YASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFAPVLEW 697
YASVRAIETK+ VDDQQWLTYWVLYSFITLFELTFAP++EW
Sbjct: 105 YASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEW 227
Score = 92.7 bits (196), Expect(2) = 3e-023
Identities = 40/77 (51%), Positives = 53/77 (68%)
Frame = -2 / +2
Query: 697 ASFLVLCKAVLQLLVSIATVQWSCTCI*AFCEANDCKSASCKHLVYSKEG*IK*T**CNF 518
AS LV+CK VL LLV + VQW C C+ FC AN C+ + +H+V SKE +* **C+
Sbjct: 359 ASILVICKVVL*LLVGLTLVQWCCLCLRPFCAANVCEPPNSEHMVCSKE*EAR*I**CSV 538
Query: 517 SCTEVH*AKWIKSV*ES 467
SC E++*AKW S+*E+
Sbjct: 539 SCREIY*AKWTGSI*EA 589
Score = 77.6 bits (163), Expect(3) = 9e-025
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = +1 / -2
Query: 457 LVNKILKRF*SILLNVPLCS*NYIIRST*FILLWNIPDVYNLLIYNHWPHKMLIYMCSSI 636
L +++LK F SILLN+ LCS* IIR T* ++ WNIP V+ L ++ WPHKM++ + S+I
Sbjct: 599 LADELLKCFRSILLNISLCS*QNIIRFT*LLIPWNIPYVHYLAVHKRWPHKMVVNISSTI 420
Query: 637 E 639
E
Sbjct: 419 E 417
Score = 71.2 bits (149), Expect(2) = 2e-036
Identities = 32/41 (78%), Positives = 34/41 (82%)
Frame = +2 / -3
Query: 698 HSSTGAKVSSNRVINEYSTQYVSHC*SSTADFVSIALTEAY 820
HS GAKVSSN+VINEY+TQ VSHC SST VSIALTEAY
Sbjct: 226 HSIIGAKVSSNKVINEYNTQ*VSHCWSSTGFLVSIALTEAY 104
Score = 51.9 bits (107), Expect(3) = 9e-025
Identities = 24/41 (58%), Positives = 28/41 (68%)
Frame = +1 / -2
Query: 697 PFEYRSKGELE*SDK*VQHPVREPLLIIHSRFCFNCSNRGI 819
P + SK L+ SDK*VQHPV EPLL+I+ F CSNR I
Sbjct: 227 PLDNWSKS*LKQSDK*VQHPVSEPLLVIYRIFGLYCSNRSI 105
Score = 40.5 bits (82), Expect(2) = 3e-023
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -2 / +2
Query: 784 CG*SAMAHVLGAVLIYHSIRAHLCSGTRMAS 692
C * A+AH+LG VLIYH + A+ CS R+ +
Sbjct: 140 CR*PAVAHLLGVVLIYHFV*ANFCSNYRVVN 232
Score = 28.1 bits (55), Expect(3) = 9e-025
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1 / -2
Query: 655 PAIEEQLCIRPERKP 699
PA++EQLCI P+ KP
Sbjct: 401 PAVKEQLCI*PKWKP 357
>gb|CL166425.1|CL166425 104_362_10809365_116_31799_197 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809365, DNA
sequence
Length = 611
Score = 106 bits (226), Expect(5) = 1e-058
Identities = 46/52 (88%), Positives = 49/52 (94%)
Frame = -3 / -2
Query: 459 KFKSSNPRRSILEEVEVERRARIQLESEAREVNPFFNPEYQY*ATIFPSLAR 304
+FKSSNP+RSILEEVEVERRARIQ ESEAREVNPFFNPEYQY*AT F SL+R
Sbjct: 580 QFKSSNPKRSILEEVEVERRARIQRESEAREVNPFFNPEYQY*ATCFLSLSR 425
Score = 101 bits (215), Expect(5) = 7e-053
Identities = 41/52 (78%), Positives = 45/52 (86%)
Frame = +1 / +2
Query: 304 PGK*RENGCLVLIFWIEERVHFPRFRF*LNPGPPFNLYLLQN*APWVRTLKL 459
PG+*++ GCLVLIFWIEER+H P FRF LNPG PFNLYLLQN*A WV TLKL
Sbjct: 425 PGE*KKTGCLVLIFWIEERIHLPCFRFSLNPGSPFNLYLLQN*ALWV*TLKL 580
Score = 94.5 bits (200), Expect(5) = 9e-048
Identities = 42/51 (82%), Positives = 45/51 (88%)
Frame = -2 / -1
Query: 457 V*EFEPKALNSGGGRG*KEGQDSTRI*SEGSEPFLQSRISVLGNHFPFTCQ 305
V*EF+PKALNSGGGRG*KE QDSTRI*S+G E FLQSRIS+LGN F FT Q
Sbjct: 578 V*EFKPKALNSGGGRG*KESQDSTRI*SKGGESFLQSRISILGNLFSFTLQ 426
Score = 94.1 bits (199), Expect(5) = 9e-039
Identities = 40/54 (74%), Positives = 45/54 (83%)
Frame = -1 / -3
Query: 464 LTSLRVRTQGAQFWRR*RLKGGPGFN*NLKRGK*TLSSIQNISTRQPFSLHLPG 303
+ SLRV+TQ AQFWRR*RLKG PGFN NLK+G+* LSSIQNI+TRQP H PG
Sbjct: 585 MCSLRVQTQSAQFWRR*RLKGEPGFNENLKQGR*ILSSIQNINTRQPVFFHSPG 424
Score = 92.7 bits (196), Expect(5) = 3e-048
Identities = 43/60 (71%), Positives = 47/60 (78%)
Frame = +3 / +1
Query: 303 SWQVKGKWLPSTDILD*RKGSLPSLQILVESWPSFQPLPPPELSALGSNS*TC*QDSQTL 482
+W+VK LPS DILD*RK S P LQILVESW SFQPLPPPELSALG NS*T +S+ L
Sbjct: 424 TWRVKENRLPSIDILD*RKDSPPLLQILVESWLSFQPLPPPELSALGLNS*TAHVNSEYL 603
Score = 64.3 bits (134), Expect(5) = 1e-058
Identities = 27/40 (67%), Positives = 31/40 (77%)
Frame = -3 / -3
Query: 330 ATIFPSLARNVLGSVWRKMSGY*DCVLHLLNR*YCVDGQP 211
A I + RNVLGSVWRKMSGY* C+LHL +R*YCV +P
Sbjct: 303 ALIIYTQCRNVLGSVWRKMSGY*HCILHLPSR*YCVAVKP 184
Score = 63.8 bits (133), Expect(5) = 9e-048
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = -2 / -2
Query: 316 FTCQECARIGLEEDVWILGLRFAPTESMILCRWTTI 209
++ QECARI LEEDVWIL L FAPTES+ILC T+
Sbjct: 289 YSMQECARISLEEDVWILALHFAPTESIILCSCKTM 182
Score = 63.4 bits (132), Expect(5) = 1e-058
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = -1 / -3
Query: 125 HWTLVMCLTSFLKVVVELGISSSLV*YRC 39
HWTLVMCL F+KVVV+LGISSSL+*YRC
Sbjct: 87 HWTLVMCLNGFMKVVVDLGISSSLI*YRC 1
Score = 62.5 bits (130), Expect(5) = 9e-039
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = -1 / -1
Query: 305 GMC*DRFGGRCLDIRIAFCTY*IDDIV*MDNH 210
GMC*D+FGGRCLDI AFCTY +D+IV*+ NH
Sbjct: 278 GMC*DQFGGRCLDISTAFCTYRVDNIV*L*NH 183
Score = 62.0 bits (129), Expect(5) = 7e-053
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2 / +2
Query: 209 YGCPSTQYHRFSRCKTQS*YPDIFLQTDPSTFL 307
+G +TQY+R RCK Q *YPDIFLQTDPSTFL
Sbjct: 182 HGFTATQYYRLGRCKMQC*YPDIFLQTDPSTFL 280
Score = 61.6 bits (128), Expect(5) = 7e-053
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +3 / +1
Query: 39 TPISDKRRRNT*FNNYLQETSEAHN*SPV 125
TPISDKRRRNT* NNYL ET EAHN*SPV
Sbjct: 1 TPISDKRRRNT*INNYLHETIEAHN*SPV 87
Score = 61.1 bits (127), Expect(5) = 3e-048
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = +1 / +2
Query: 40 HLYQTRDEEIPSSTTTFKKLVRHITRVQCEYII 138
HLYQ RDEEIP STTTF K +RHITRVQC I
Sbjct: 2 HLYQIRDEEIPRSTTTFMKPLRHITRVQCHEYI 100
Score = 58.8 bits (122), Expect(3) = 1e-026
Identities = 26/42 (61%), Positives = 29/42 (69%)
Frame = +1 / +1
Query: 181 SIATTYLQQLWLSIYTISSIQ*VQNAILISRHLPPNRS*HIP 306
S+ Y W YTI S +*VQNA+LISRHLPPN S*HIP
Sbjct: 154 SLQHIYNNHAWFYSYTILSTR*VQNAVLISRHLPPN*S*HIP 279
Score = 58.3 bits (121), Expect(5) = 3e-048
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +3 / +3
Query: 195 ISTTIMVVHLHNIIDSVGAKRNPNIQTSSSKPILAHS 305
+ + MV+ LHNIIDSVGAK + NIQTSSSK ILAHS
Sbjct: 168 LQQSCMVLQLHNIIDSVGAKCSANIQTSSSKLILAHS 278
Score = 55.1 bits (114), Expect(3) = 1e-026
Identities = 27/51 (52%), Positives = 27/51 (52%)
Frame = +2 / +3
Query: 305 LASEGKMVA*Y*YSGLKKGFXXXXXXXXXXXXXXXXXXXXRIERLGFELLN 457
L SE K VA*Y*YSGLKKGF RIER GFELLN
Sbjct: 426 LESERKQVA*Y*YSGLKKGFTSLASDSR*ILALLSTSTSSRIERFGFELLN 578
Score = 52.8 bits (109), Expect(5) = 9e-048
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / -2
Query: 126 TLDSSYVPH*FLEGSC*TRYFFVSCLI*V 40
TLDSSYVP F EGSC*+RYFFVS LI*V
Sbjct: 88 TLDSSYVPQWFHEGSC*SRYFFVSYLI*V 2
Score = 49.6 bits (102), Expect(3) = 1e-026
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = +2 / +3
Query: 41 TYIRQETKKYLVQQLPSRN**GT*LESSV 127
TYIR ETKKYL QQLPS N *GT*LESSV
Sbjct: 3 TYIR*ETKKYLDQQLPS*NH*GT*LESSV 89
Score = 37.3 bits (75), Expect(5) = 1e-058
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2 / -1
Query: 178 SCNGHVANVSCCWKLCI 128
S NGHV N+SCC KLCI
Sbjct: 143 SYNGHVMNISCCSKLCI 93
Score = 35.9 bits (72), Expect(5) = 7e-053
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3 / +1
Query: 129 IHNFQQHETFAT*PLHE 179
IHNF+QHE F T*PL+E
Sbjct: 94 IHNFEQHEIFMT*PLYE 144
Score = 34.5 bits (69), Expect(5) = 9e-048
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -1 / -3
Query: 176 M*WSCRECFMLLEIMYS 126
+*WSC E FMLL+IMYS
Sbjct: 141 I*WSCHEYFMLLKIMYS 91
Score = 34.5 bits (69), Expect(5) = 3e-048
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1 / +2
Query: 127 EYIISSSMKHSRHDHYM 177
EYII S+MK+S HDHYM
Sbjct: 92 EYIILSNMKYS*HDHYM 142
Score = 32.7 bits (65), Expect(5) = 9e-039
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3 / -2
Query: 177 HVMVMSRMFHAAGNYVF 127
H+MVMS +FH A NYVF
Sbjct: 142 HIMVMS*IFHVAQNYVF 92
Score = 32.2 bits (64), Expect(5) = 1e-058
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -1 / -2
Query: 212 HNCCRYVVAMELM 174
H+CC+YVVAMEL+
Sbjct: 181 HDCCKYVVAMELL 143
Score = 27.6 bits (54), Expect(5) = 7e-053
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 171 LHEFHRHNISTTIM 212
+ EFHR+NI TTIM
Sbjct: 140 MKEFHRYNIFTTIM 181
Score = 27.2 bits (53), Expect(5) = 9e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -1
Query: 124 TGL*LCASLVS*R 86
TGL*LCAS+VS*R
Sbjct: 86 TGL*LCASMVS*R 48
Score = 25.8 bits (50), Expect(5) = 3e-048
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 179 VPSPQHIYNNY 211
VPS QHIYNN+
Sbjct: 148 VPSLQHIYNNH 180
Score = 25.4 bits (49), Expect(5) = 9e-048
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3 / -1
Query: 210 *LL*ICCGDGT 178
*LL*ICC DGT
Sbjct: 179 *LL*ICCSDGT 147
Score = 23.5 bits (45), Expect(5) = 9e-039
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2 / -3
Query: 211 IIVVDMLWRWNS 176
+IVV+ML RWNS
Sbjct: 180 MIVVNML*RWNS 145
>gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_G11_A002 5', mRNA sequence
Length = 778
Score = 215 bits (465), Expect = 7e-055
Identities = 82/114 (71%), Positives = 96/114 (84%)
Frame = -3 / +3
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
S LKV+ NN DVLAGPLV+LAYPLYASV+AIETKS VDDQQWLTYWVLY ITLFE TFA
Sbjct: 222 SLLKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYPLITLFEPTFA 401
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNIWYIPKK 550
+++WLPFW KL F CWLVLP FNGAA+VY+++VRP + Q+VNIWY+P+K
Sbjct: 402 SIIQWLPFWPSMKLIFICWLVLPYFNGAAYVYQNYVRPAFIKNQMVNIWYVPQK 563
Score = 145 bits (311), Expect = 1e-033
Identities = 72/113 (63%), Positives = 76/113 (67%)
Frame = +2 / -1
Query: 551 FFGIYQMFTTC*FTIIGLTKCSYTCAAPLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSN 730
F G YQM T F GLT YT AAPL G T+QQ+K +F QKGSH A V SN
Sbjct: 562 F*GTYQMLTIWFFMKAGLT*FWYT*AAPLKYGKTSQQIKINFIEGQKGSH*IIDANVGSN 383
Query: 731 RVINEYSTQYVSHC*SSTADFVSIALTEAYRGYASETKGPARTSMLLTKTLRK 889
VIN Y TQYVSHC*SST D VSIALTEAY+G AS TKGPARTS LL TL K
Sbjct: 382 NVINGYRTQYVSHC*SSTGDLVSIALTEAYKG*ASATKGPARTSKLLATTLSK 224
>gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 3', mRNA sequence
Length = 671
Score = 204 bits (441), Expect = 2e-051
Identities = 77/124 (62%), Positives = 99/124 (79%)
Frame = -3 / +1
Query: 747 YSFITLFELTFAPVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMIVNQQVVNI 568
YSFITLFELTFAP++EWLPFWSYAKLFFNCWLVLP FNGAA+VY+HFVRP VN+Q+VNI
Sbjct: 1 YSFITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPTFVNRQIVNI 180
Query: 567 WYIPKKDESSRPDDVISAAQRYIEQNGSKAFENLVNKFKSSNPRRSILEEVEVERRARIQ 388
WY+P+ ++ + DDV+SAA+RYIEQNG +AFE L++K S+ R+ + E A +
Sbjct: 181 WYVPRNEKLGKSDDVLSAAERYIEQNGPEAFEKLISKSTKSSKSRNTKRSILEEAEAENR 360
Query: 387 LESE 376
++E
Sbjct: 361 AKAE 372
Score = 136 bits (292), Expect(2) = 6e-033
Identities = 64/100 (64%), Positives = 72/100 (72%)
Frame = +2 / -1
Query: 446 ELLNLLTRFSNAFDPFCSMYLCAAEITSSGLLDSSFFGIYQMFTTC*FTIIGLTKCSYTC 625
+ ++LL FSNA PFCS+YL AA+ TSS L SF G Y MFT FT +G TK S T
Sbjct: 302 DFVDLLMSFSNASGPFCSIYLSAADRTSSDLPSFSFLGTYHMFTIWRFTNVGRTKWS*T* 123
Query: 626 AAPLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVINE 745
AAPLN G TNQQLKN+FA DQ GSHS GAKVSSN+VINE
Sbjct: 122 AAPLNQGKTNQQLKNNFAYDQNGSHSIIGAKVSSNKVINE 3
Score = 112 bits (240), Expect(2) = 1e-028
Identities = 50/97 (51%), Positives = 66/97 (68%)
Frame = -2 / +3
Query: 745 LIYHSIRAHLCSGTRMASFLVLCKAVLQLLVSIATVQWSCTCI*AFCEANDCKSASCKHL 566
LIYH + A+ CS R+AS LV+CK VL LLV + VQW C C+ FC AN C+ + +H+
Sbjct: 3 LIYHFV*ANFCSNYRVASILVICKVVL*LLVGLTLVQWCCLCLRPFCAANVCEPPNSEHM 182
Query: 565 VYSKEG*IK*T**CNFSCTEVH*AKWIKSV*ESC*QV 455
V SKE +* **C+ SC E++*AKW S+*E+ QV
Sbjct: 183 VCSKE*EAR*I**CSVSCREIY*AKWTGSI*EAHQQV 293
Score = 35.4 bits (71), Expect(2) = 1e-028
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -3 / +1
Query: 453 KSSNPRRSILEEVEVERRARIQLES 379
KS N +RSILEE E E RA+ + ES
Sbjct: 307 KSRNTKRSILEEAEAENRAKAERES 381
Score = 26.3 bits (51), Expect(2) = 6e-033
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / -2
Query: 405 FQPLPPPELSALGS 446
FQPLPPP +AL S
Sbjct: 355 FQPLPPPRSTALCS 314
>gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 499
Score = 198 bits (426), Expect = 2e-049
Identities = 77/98 (78%), Positives = 87/98 (88%)
Frame = -3 / +1
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
S LKV+ NN DVLAGPLV+LAYPLYASV+AIETKSAVDDQQWLTYWVLYS ITLFELTFA
Sbjct: 202 SLLKVVANNFDVLAGPLVALAYPLYASVKAIETKSAVDDQQWLTYWVLYSLITLFELTFA 381
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRP 598
+++WLPFW KL F CWLVLP FNGAA+VY+++VRP
Sbjct: 382 SIIQWLPFWPSMKLIFICWLVLPYFNGAAYVYQNYVRP 495
Score = 140 bits (300), Expect = 4e-032
Identities = 67/97 (69%), Positives = 72/97 (74%)
Frame = +2 / -3
Query: 599 GLTKCSYTCAAPLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVINEYSTQYVSHC*S 778
GLT YT AAPL G T+QQ+K +F QKGSH A VSSN VINEY TQYVSHC*S
Sbjct: 494 GLT*FWYT*AAPLKYGKTSQQIKINFIEGQKGSH*IIDANVSSNNVINEYRTQYVSHC*S 315
Query: 779 STADFVSIALTEAYRGYASETKGPARTSMLLTKTLRK 889
STAD VSIALTEAY+G AS TKGPARTS LL TL +
Sbjct: 314 STADLVSIALTEAYKG*ASATKGPARTSKLLATTLSR 204
>gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 190 bits (410), Expect = 3e-047
Identities = 74/97 (76%), Positives = 84/97 (86%)
Frame = -3 / +2
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
S LKV+ NN DVLAGPLV+LAYPLYASV+AIETKS VDDQQWLTYWVLYS ITLFELTFA
Sbjct: 212 SLLKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYSLITLFELTFA 391
Query: 711 PVLEWLPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVR 601
+++WLPFW KL F CWLVLP FNGA +VY+++VR
Sbjct: 392 SIIQWLPFWPSMKLIFICWLVLPYFNGATYVYQNYVR 502
Score = 138 bits (295), Expect = 2e-031
Identities = 66/97 (68%), Positives = 70/97 (72%)
Frame = +2 / -1
Query: 599 GLTKCSYTCAAPLNCGNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVINEYSTQYVSHC*S 778
GLT YT APL G T+QQ+K +F QKGSH A VSSN VINEY TQYVSHC*S
Sbjct: 504 GLT*FWYT*VAPLKYGKTSQQIKINFIEGQKGSH*IIDANVSSNNVINEYRTQYVSHC*S 325
Query: 779 STADFVSIALTEAYRGYASETKGPARTSMLLTKTLRK 889
ST D VSIALTEAY+G AS TKGPARTS LL TL K
Sbjct: 324 STGDLVSIALTEAYKG*ASATKGPARTSKLLATTLSK 214
>gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 453
Score = 168 bits (361), Expect = 2e-040
Identities = 66/83 (79%), Positives = 72/83 (86%)
Frame = -3 / +2
Query: 891 SFLKVLVNNMDVLAGPLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFA 712
S LKV+ NN DVLAGPLV+LAYPLYASV+AIETKS VDDQQWLTYWVLYS ITLFELTFA
Sbjct: 200 SLLKVVANNFDVLAGPLVALAYPLYASVKAIETKSPVDDQQWLTYWVLYSLITLFELTFA 379
Query: 711 PVLEWLPFWSYAKLFFNCWLVLP 643
+++WLPFW KL F CWLVLP
Sbjct: 380 SIIQWLPFWPSMKLIFICWLVLP 448
Score = 125 bits (268), Expect = 1e-027
Identities = 58/82 (70%), Positives = 62/82 (75%)
Frame = +2 / -1
Query: 644 GNTNQQLKNSFA*DQKGSHSSTGAKVSSNRVINEYSTQYVSHC*SSTADFVSIALTEAYR 823
G T+QQ+K +F QKGSH A VSSN VINEY TQYVSHC*SST D VSIALTEAY+
Sbjct: 447 GKTSQQIKINFIEGQKGSH*IIDANVSSNNVINEYRTQYVSHC*SSTGDLVSIALTEAYK 268
Query: 824 GYASETKGPARTSMLLTKTLRK 889
G AS TKGPARTS LL TL K
Sbjct: 267 G*ASATKGPARTSKLLATTLSK 202
>gb|CL166424.1|CL166424 104_362_10809365_114_31798_197 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809365, DNA
sequence
Length = 754
Score = 106 bits (226), Expect(2) = 2e-029
Identities = 46/52 (88%), Positives = 49/52 (94%)
Frame = -3 / +1
Query: 459 KFKSSNPRRSILEEVEVERRARIQLESEAREVNPFFNPEYQY*ATIFPSLAR 304
+FKSSNP+RSILEEVEVERRARIQ ESEAREVNPFFNPEYQY*AT F SL+R
Sbjct: 400 QFKSSNPKRSILEEVEVERRARIQRESEAREVNPFFNPEYQY*ATCFLSLSR 555
Score = 101 bits (215), Expect(2) = 9e-026
Identities = 41/52 (78%), Positives = 45/52 (86%)
Frame = +1 / -2
Query: 304 PGK*RENGCLVLIFWIEERVHFPRFRF*LNPGPPFNLYLLQN*APWVRTLKL 459
PG+*++ GCLVLIFWIEER+H P FRF LNPG PFNLYLLQN*A WV TLKL
Sbjct: 555 PGE*KKTGCLVLIFWIEERIHLPCFRFSLNPGSPFNLYLLQN*ALWV*TLKL 400
Score = 94.5 bits (200), Expect(2) = 9e-024
Identities = 42/51 (82%), Positives = 45/51 (88%)
Frame = -2 / +3
Query: 457 V*EFEPKALNSGGGRG*KEGQDSTRI*SEGSEPFLQSRISVLGNHFPFTCQ 305
V*EF+PKALNSGGGRG*KE QDSTRI*S+G E FLQSRIS+LGN F FT Q
Sbjct: 402 V*EFKPKALNSGGGRG*KESQDSTRI*SKGGESFLQSRISILGNLFSFTLQ 554
Score = 94.1 bits (199), Expect(2) = 8e-023
Identities = 40/54 (74%), Positives = 45/54 (83%)
Frame = -1 / +2
Query: 464 LTSLRVRTQGAQFWRR*RLKGGPGFN*NLKRGK*TLSSIQNISTRQPFSLHLPG 303
+ SLRV+TQ AQFWRR*RLKG PGFN NLK+G+* LSSIQNI+TRQP H PG
Sbjct: 395 MCSLRVQTQSAQFWRR*RLKGEPGFNENLKQGR*ILSSIQNINTRQPVFFHSPG 556
Score = 92.7 bits (196), Expect(2) = 5e-023
Identities = 43/60 (71%), Positives = 47/60 (78%)
Frame = +3 / -1
Query: 303 SWQVKGKWLPSTDILD*RKGSLPSLQILVESWPSFQPLPPPELSALGSNS*TC*QDSQTL 482
+W+VK LPS DILD*RK S P LQILVESW SFQPLPPPELSALG NS*T +S+ L
Sbjct: 556 TWRVKENRLPSIDILD*RKDSPPLLQILVESWLSFQPLPPPELSALGLNS*TAHVNSEYL 377
Score = 44.6 bits (91), Expect(2) = 2e-029
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = -3 / +2
Query: 330 ATIFPSLARNVLGSVWRKMSGY*DCV 253
A I + RNVLGSVWRKMSGY* C+
Sbjct: 677 ALIIYTQCRNVLGSVWRKMSGY*HCI 754
Score = 40.5 bits (82), Expect(2) = 9e-024
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2 / +1
Query: 316 FTCQECARIGLEEDVWILGL 257
++ QECARI LEEDVWIL L
Sbjct: 691 YSMQECARISLEEDVWILAL 750
Score = 40.5 bits (82), Expect(2) = 9e-026
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1 / -1
Query: 253 NAILISRHLPPNRS*HIP 306
NA+LISRHLPPN S*HIP
Sbjct: 754 NAVLISRHLPPN*S*HIP 701
Score = 40.0 bits (81), Expect(2) = 5e-023
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2 / -2
Query: 257 QS*YPDIFLQTDPSTFL 307
Q *YPDIFLQTDPSTFL
Sbjct: 750 QC*YPDIFLQTDPSTFL 700
Score = 37.7 bits (76), Expect(2) = 8e-023
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1 / +3
Query: 305 GMC*DRFGGRCLDIRIA 255
GMC*D+FGGRCLDI A
Sbjct: 702 GMC*DQFGGRCLDISTA 752
>gb|CW181650.1|CW181650 104_596_11163625_116_36651_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163625, DNA
sequence
Length = 416
Score = 89.0 bits (188), Expect(3) = 5e-025
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = -1 / +1
Query: 125 HWTLVMCLTSFLKVVVELGISSSLV*YRCKPCGTAMGG*LS 3
HWTLVMCL F+KVVV+LGIS SL+*YRCKPCGTAMGG*LS
Sbjct: 103 HWTLVMCLNGFMKVVVDLGISYSLI*YRCKPCGTAMGG*LS 225
Score = 86.8 bits (183), Expect(3) = 4e-022
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +1 / -1
Query: 4 DSQPPMAVPHGLHLYQTRDEEIPSSTTTFKKLVRHITRVQCEYII 138
DSQPPMAVPHGLHLYQ R+ EIP STTTF K +RHITRVQC I
Sbjct: 224 DSQPPMAVPHGLHLYQIREYEIPRSTTTFMKPLRHITRVQCHEYI 90
Score = 37.7 bits (76), Expect(3) = 5e-025
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2 / +2
Query: 178 SCNGHVANVSCCWKLCIH 125
S NGH N+SCC KLCIH
Sbjct: 47 SYNGHDMNISCCSKLCIH 100
Score = 34.5 bits (69), Expect(3) = 4e-022
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / -3
Query: 126 *IHNFQQHETFAT*PLHE 179
*IHNF+QHE F +*PL+E
Sbjct: 99 *IHNFEQHEIFMS*PLYE 46
Score = 27.2 bits (53), Expect(3) = 5e-025
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1 / +3
Query: 212 HNCCRYVVAMELM 174
H+ C+YVVAMEL+
Sbjct: 9 HDWCKYVVAMELL 47
Score = 23.1 bits (44), Expect(3) = 4e-022
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3 / -1
Query: 171 LHEFHRHNISTTIM 212
+ EFHR+NI T I+
Sbjct: 50 MKEFHRYNIFTPIV 9
>gb|CW190211.1|CW190211 104_611_11174383_148_36750_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174383, DNA
sequence
Length = 665
Score = 116 bits (247), Expect = 9e-025
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = -3 / -1
Query: 840 VSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFAPVLEWLPFWSYAKLFFN 661
V+ + YASV A+E+ S VDD+QWL+YW++YSFITL E+ P+L W+P W KL F
Sbjct: 371 VTTGWCRYASVCAMESPSKVDDEQWLSYWIIYSFITLLEMLAEPLLYWIPVWYPVKLLFV 192
Query: 660 CWLVLPQFNGAAHVYEHFVRPMI 592
WLVLPQF GA+ +YE VR +
Sbjct: 191 AWLVLPQFKGASFIYEKLVREQL 123
>gb|CW451391.1|CW451391 fsbb001f191h03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191h03, DNA
sequence
Length = 591
Score = 77.6 bits (163), Expect(2) = 9e-025
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -3 / -2
Query: 819 YASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFAPVLEW 697
YAS+RAIE+ S++DDQQWLTYWVLYS ITLFEL+ VL+W
Sbjct: 356 YASMRAIESPSSLDDQQWLTYWVLYSLITLFELSCWKVLQW 234
Score = 57.9 bits (120), Expect(2) = 9e-025
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -3 / -1
Query: 693 PFWSYAKLFFNCWLVLPQFNGAAHVYEHFVR 601
P W Y KL F CWLVLP FNGAA++YE VR
Sbjct: 120 PLWPYMKLLFCCWLVLPIFNGAAYIYEAHVR 28
>gb|CW113797.1|CW113797 104_488_11105645_116_34559_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105645, DNA
sequence
Length = 649
Score = 115 bits (246), Expect = 1e-024
Identities = 43/76 (56%), Positives = 55/76 (72%)
Frame = -3 / -2
Query: 819 YASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFAPVLEWLPFWSYAKLFFNCWLVLPQ 640
YASV A+E+ S VDD+QWL+YW++YSFITL E+ P+L W+P W KL F WLVLPQ
Sbjct: 639 YASVCAMESPSKVDDEQWLSYWIIYSFITLLEMLAEPLLYWIPVWYPVKLLFVAWLVLPQ 460
Query: 639 FNGAAHVYEHFVRPMI 592
F GA+ +YE VR +
Sbjct: 459 FKGASFIYEKLVREQL 412
>gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 3', mRNA sequence
Length = 560
Score = 115 bits (246), Expect = 1e-024
Identities = 44/88 (50%), Positives = 64/88 (72%)
Frame = -3 / +1
Query: 639 FNGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRPDDVISAAQRYIEQNGSKAFENLVN 460
FNGAA+VY+HFVRP VN+Q+VNIWY+P+ ++ + DDV+SAA+RYIEQNG +AFE L++
Sbjct: 4 FNGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKSDDVLSAAERYIEQNGPEAFEKLIS 183
Query: 459 KFKSSNPRRSILEEVEVERRARIQLESE 376
K S+ R+ + E A + ++E
Sbjct: 184 KSTKSSKSRNTKRSILEEAEAENRAKAE 267
>gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 112 bits (240), Expect = 8e-024
Identities = 43/87 (49%), Positives = 63/87 (72%)
Frame = -3 / +3
Query: 636 NGAAHVYEHFVRPMIVNQQVVNIWYIPKKDESSRPDDVISAAQRYIEQNGSKAFENLVNK 457
NGAA+VY+HFVRP VN+Q+VNIWY+P+ ++ + DDV+SAA+RYIEQNG +AFE L++K
Sbjct: 3 NGAAYVYDHFVRPTFVNRQIVNIWYVPRNEKLGKSDDVLSAAERYIEQNGPEAFEKLISK 182
Query: 456 FKSSNPRRSILEEVEVERRARIQLESE 376
S+ R+ + E A + ++E
Sbjct: 183 STKSSKSRNTKRSILEEAEAENRAKAE 263
>gb|CW329729.1|CW329729 104_826_11479998_148_35997_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479998, DNA
sequence
Length = 676
Score = 80.8 bits (170), Expect(2) = 8e-023
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = -3 / +3
Query: 846 PLVSLAYPLYASVRAIETKSAVDDQQWLTYWVLYSFITLFELTFAPVLEW 697
P V L YPLYASV+A+E+ S +DD+QWL YW+LYSFITL E+ ++ W
Sbjct: 63 PTVMLLYPLYASVQAMESPSKLDDEQWLAYWILYSFITLMEMVLESLIYW 212
Score = 48.3 bits (99), Expect(2) = 8e-023
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -3 / +3
Query: 696 LPFWSYAKLFFNCWLVLPQFNGAAHVYEHFVRPMI 592
+P W KL F WL LP F GAA +Y+ FVR +
Sbjct: 303 IPIWYELKLLFIAWLALPNFRGAAFIYDKFVREQL 407
>gb|CW488973.1|CW488973 fsbb001f265k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265k08, DNA
sequence
Length = 732
Score = 61.1 bits (127), Expect(4) = 1e-022
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1 / -3
Query: 847 PREDIHVVDQDLEERSGSAPHSVVTPSK 930
PRE+IHVVDQDLEERSGSAPHS V P+K
Sbjct: 673 PRENIHVVDQDLEERSGSAPHSAVRPAK 590
Score = 38.2 bits (77), Expect(4) = 1e-022
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -1
Query: 985 SRWVWWSRTCYCD 1023
SRWVWWSRTC C+
Sbjct: 543 SRWVWWSRTCDCE 505
Score = 33.6 bits (67), Expect(4) = 1e-022
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / -2
Query: 922 PSKTAKSVEECEGR 963
PSKTAKSVEECE R
Sbjct: 599 PSKTAKSVEECESR 558
Score = 29.9 bits (59), Expect(4) = 1e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / -2
Query: 1019 ATASERPPFVLFLPS 1063
ATASE PPFV F PS
Sbjct: 515 ATASEWPPFVFFAPS 471
>gb|CW223489.1|CW223489 104_659_11202943_148_37190_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202943, DNA
sequence
Length = 625
Score = 61.1 bits (127), Expect(4) = 1e-022
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1 / +2
Query: 847 PREDIHVVDQDLEERSGSAPHSVVTPSK 930
PRE+IHVVDQDLEERSGSAPHS V P+K
Sbjct: 113 PRENIHVVDQDLEERSGSAPHSAVRPAK 196
Score = 38.2 bits (77), Expect(4) = 1e-022
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 985 SRWVWWSRTCYCD 1023
SRWVWWSRTC C+
Sbjct: 243 SRWVWWSRTCDCE 281
Score = 33.6 bits (67), Expect(4) = 1e-022
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / +1
Query: 922 PSKTAKSVEECEGR 963
PSKTAKSVEECE R
Sbjct: 187 PSKTAKSVEECESR 228
Score = 29.9 bits (59), Expect(4) = 1e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +1
Query: 1019 ATASERPPFVLFLPS 1063
ATASE PPFV F PS
Sbjct: 271 ATASEWPPFVFFAPS 315
>gb|CW366119.1|CW366119 fsbb001f038p12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038p12, DNA
sequence
Length = 603
Score = 61.1 bits (127), Expect(4) = 1e-022
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1 / +3
Query: 847 PREDIHVVDQDLEERSGSAPHSVVTPSK 930
PRE+IHVVDQDLEERSGSAPHS V P+K
Sbjct: 57 PRENIHVVDQDLEERSGSAPHSAVRPAK 140
Score = 38.2 bits (77), Expect(4) = 1e-022
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 985 SRWVWWSRTCYCD 1023
SRWVWWSRTC C+
Sbjct: 187 SRWVWWSRTCDCE 225
Score = 33.6 bits (67), Expect(4) = 1e-022
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / +2
Query: 922 PSKTAKSVEECEGR 963
PSKTAKSVEECE R
Sbjct: 131 PSKTAKSVEECESR 172
Score = 29.9 bits (59), Expect(4) = 1e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +2
Query: 1019 ATASERPPFVLFLPS 1063
ATASE PPFV F PS
Sbjct: 215 ATASEWPPFVFFAPS 259
>gb|CW473388.1|CW473388 fsbb001f228l19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228l19, DNA
sequence
Length = 600
Score = 61.1 bits (127), Expect(4) = 1e-022
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +1 / -2
Query: 847 PREDIHVVDQDLEERSGSAPHSVVTPSK 930
PRE+IHVVDQDLEERSGSAPHS V P+K
Sbjct: 467 PRENIHVVDQDLEERSGSAPHSAVRPAK 384
Score = 38.2 bits (77), Expect(4) = 1e-022
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 985 SRWVWWSRTCYCD 1023
SRWVWWSRTC C+
Sbjct: 337 SRWVWWSRTCDCE 299
Score = 33.6 bits (67), Expect(4) = 1e-022
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / -1
Query: 922 PSKTAKSVEECEGR 963
PSKTAKSVEECE R
Sbjct: 393 PSKTAKSVEECESR 352
Score = 29.9 bits (59), Expect(4) = 1e-022
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / -1
Query: 1019 ATASERPPFVLFLPS 1063
ATASE PPFV F PS
Sbjct: 309 ATASEWPPFVFFAPS 265
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,317,343,031
Number of Sequences: 832831
Number of extensions: 18951919
Number of successful extensions: 99864
Number of sequences better than 1.0e-020: 25
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 38225795724
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)