TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724818.2.1
(1089 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL149701.1|CL149701 104_330_10777997_114_31353_317 Sorgh... 233 e-110
gb|CW258312.1|CW258312 104_724_11227807_148_35168_030 Sorgh... 306 e-102
gb|CW075039.1|CW075039 104_354_10806217_116_31831_121 Sorgh... 236 3e-076
gb|CW327394.1|CW327394 104_823_11478723_148_35976_014 Sorgh... 122 4e-068
gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorgh... 257 3e-067
gb|CW327393.1|CW327393 104_823_11478723_116_35975_014 Sorgh... 250 4e-067
gb|CL147776.1|CL147776 104_327_10592627_148_31780_135 Sorgh... 122 7e-062
gb|CW216099.1|CW216099 104_648_11194932_148_37119_036 Sorgh... 237 2e-061
gb|BG103283.1|BG103283 RHIZ2_18_E05.b1_A003 Rhizome2 (RHIZ2... 220 4e-056
gb|CW265811.1|CW265811 104_735_11232087_148_35267_060 Sorgh... 194 7e-050
gb|CW063943.1|CW063943 104_309_10522288_114_30136 Sorghum m... 190 4e-047
gb|CN125369.1|CN125369 RHOH1_10_D11.g1_A002 Acid- and alkal... 135 4e-046
gb|CN126897.1|CN126897 RHOH1_19_G02.g1_A002 Acid- and alkal... 130 9e-045
gb|CW070964.1|CW070964 104_323_10591330_114_30474 Sorghum m... 161 1e-041
gb|CW337923.1|CW337923 104_838_11484471_116_36126_064 Sorgh... 170 3e-041
gb|CX613512.1|CX613512 GABR1_8_C12.g1_A002 GA- or brassinol... 118 4e-041
gb|CW491052.1|CW491052 fsbb001f280m01k0 Sorghum methylation... 163 7e-041
gb|BE355392.1|BE355392 DG1_114_C12.b2_A002 Dark Grown 1 (DG... 164 2e-039
gb|CW459001.1|CW459001 fsbb001f205i16f0 Sorghum methylation... 149 4e-039
gb|CN126523.1|CN126523 RHOH1_17_D12.g1_A002 Acid- and alkal... 86 9e-039
gb|CW182245.1|CW182245 104_597_11163965_148_36660_021 Sorgh... 160 3e-038
gb|CW293035.1|CW293035 104_773_11414430_148_35592_025 Sorgh... 149 7e-037
gb|CW361212.1|CW361212 fsbb001f029k10k0 Sorghum methylation... 83 6e-036
gb|CW329487.1|CW329487 104_826_11479871_116_35995_096 Sorgh... 113 1e-034
gb|CL191252.1|CL191252 104_410_10906666_114_32533_045 Sorgh... 95 2e-034
gb|CF429992.1|CF429992 PH1_25_A06.g1_A002 Phosphorous-defic... 86 4e-032
gb|BE355969.1|BE355969 DG1_121_C03.b1_A002 Dark Grown 1 (DG... 121 4e-032
gb|CD424558.1|CD424558 SA1_6_C12.g1_A002 Salicylic acid-tre... 111 5e-032
gb|CN137684.1|CN137684 OX1_58_H05.g1_A002 Oxidatively-stres... 89 9e-032
gb|CW109166.1|CW109166 104_481_11097938_116_34506_011 Sorgh... 129 3e-031
gb|CW322149.1|CW322149 104_815_11475938_116_35946_001 Sorgh... 65 3e-031
gb|BG052326.1|BG052326 RHIZ2_12_C11.b1_A003 Rhizome2 (RHIZ2... 133 3e-030
gb|CW312599.1|CW312599 104_802_11470846_116_35783_087 Sorgh... 76 8e-030
gb|CD206111.1|CD206111 HS1_20_G11.g1_A012 Heat-shocked seed... 79 1e-029
gb|CN127716.1|CN127716 RHOH1_24_D09.g3_A002 Acid- and alkal... 77 2e-029
gb|CD432373.1|CD432373 ETH1_29_A12.g1_A002 Ethylene-treated... 79 2e-029
gb|CX614721.1|CX614721 GABR1_15_H03.g1_A002 GA- or brassino... 76 1e-028
gb|CW197778.1|CW197778 104_622_11181862_116_36828_091 Sorgh... 57 1e-028
gb|CD225818.1|CD225818 CCC1_41_E05.g1_A007 Callus culture/c... 69 2e-028
gb|CX615558.1|CX615558 GABR1_20_G10.g1_A002 GA- or brassino... 73 7e-028
gb|CW371598.1|CW371598 fsbb001f047c04f0 Sorghum methylation... 100 1e-027
gb|CW236177.1|CW236177 104_692_11215475_148_37500_048 Sorgh... 116 2e-027
gb|CW229116.1|CW229116 104_670_11207131_148_37260_076 Sorgh... 124 2e-027
gb|CW172683.1|CW172683 104_584_11156422_148_36543_095 Sorgh... 123 5e-027
gb|CD221105.1|CD221105 CCC1_73_D05.g1_A007 Callus culture/c... 68 3e-026
gb|CD222617.1|CD222617 CCC1_23_C12.b1_A007 Callus culture/c... 120 3e-026
gb|CD206011.1|CD206011 HS1_20_G11.b1_A012 Heat-shocked seed... 120 5e-026
gb|CD229327.1|CD229327 CCC1_14_A06.g1_A007 Callus culture/c... 63 9e-025
gb|CD229533.1|CD229533 CCC1_16_D02.g1_A007 Callus culture/c... 61 1e-024
gb|CD227866.1|CD227866 CCC1_56_E07.b1_A007 Callus culture/c... 115 2e-024
gb|AW679167.1|AW679167 WS1_23_D08.b1_A002 Water-stressed 1 ... 114 2e-024
gb|CD464043.1|CD464043 ETH1_48_G09.b1_A002 Ethylene-treated... 113 6e-024
gb|BE355306.1|BE355306 DG1_114_C12.b1_A002 Dark Grown 1 (DG... 112 8e-024
gb|CD221414.1|CD221414 CCC1_54_A05.g1_A007 Callus culture/c... 57 2e-022
gb|CD224384.1|CD224384 CCC1_33_B12.g1_A007 Callus culture/c... 57 2e-022
gb|CN137605.1|CN137605 OX1_58_H05.b1_A002 Oxidatively-stres... 107 3e-022
gb|CW070974.1|CW070974 104_323_10591332_116_30545 Sorghum m... 106 5e-022
gb|CD223588.1|CD223588 CCC1_29_B11.b1_A007 Callus culture/c... 105 9e-022
gb|CD223696.1|CD223696 CCC1_29_B11.g1_A007 Callus culture/c... 57 2e-021
gb|CD221425.1|CD221425 CCC1_54_H12.g1_A007 Callus culture/c... 57 2e-021
gb|BF585615.1|BF585615 FM1_23_E08.b1_A003 Floral-Induced Me... 105 2e-021
gb|CD226226.1|CD226226 CCC1_44_F01.g1_A007 Callus culture/c... 57 3e-021
gb|CD227758.1|CD227758 CCC1_53_D06.g1_A007 Callus culture/c... 57 3e-021
gb|CD222528.1|CD222528 CCC1_22_F01.g1_A007 Callus culture/c... 57 3e-021
gb|BE125039.1|BE125039 DG1_14_C09.b1_A002 Dark Grown 1 (DG1... 77 5e-021
>gb|CL149701.1|CL149701 104_330_10777997_114_31353_317 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777997, DNA
sequence
Length = 754
Score = 233 bits (503), Expect(3) = e-110
Identities = 95/103 (92%), Positives = 99/103 (96%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVGAFPAVVL LP+LRYLDLRFNDFEGPIPP +FDRPLDAI+LNSNRLRGPIP NL
Sbjct: 310 SNNRFVGAFPAVVLGLPALRYLDLRFNDFEGPIPPAVFDRPLDAIILNSNRLRGPIPGNL 131
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGC 824
GNSPASV+VLAHNRLGGCIPPSIGRMA TLNEIVLIDDDLTGC
Sbjct: 130 GNSPASVVVLAHNRLGGCIPPSIGRMADTLNEIVLIDDDLTGC 2
Score = 122 bits (261), Expect(3) = e-110
Identities = 48/66 (72%), Positives = 49/66 (74%)
Frame = +1 / -1
Query: 172 AAAQPPTNPXXXXXXXXXXXWKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALA 351
+A PT P WKRTAIFSDPSNFTSNW G NVCAYNGIYCAPRPSDGALA
Sbjct: 655 SAQPAPTTPALQAAYTALQSWKRTAIFSDPSNFTSNWVGSNVCAYNGIYCAPRPSDGALA 476
Query: 352 VAGIDL 369
VAGIDL
Sbjct: 475 VAGIDL 458
Score = 116 bits (248), Expect(3) = 2e-071
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = -3 / +3
Query: 823 QPVRSSSMRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
QPVRSSSM TISLSV+AILPIDGG+ PP RLCAST+T+AGE PR GMGPRRRLELR MA
Sbjct: 3 QPVRSSSMSTISLSVSAILPIDGGIHPPSRLCASTTTDAGEFPRFPGMGPRRRLELRMMA 182
Score = 106 bits (227), Expect(3) = 2e-071
Identities = 46/66 (69%), Positives = 46/66 (69%)
Frame = -3 / +3
Query: 565 GSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARSGTPRGRSAGMWP 386
G TTAGKAPTK VSGSTPQKRLELRWSSARSG PRGRSAGMWP
Sbjct: 261 GRPRTTAGKAPTKRLLLRSSSWRRRRRRKVSGSTPQKRLELRWSSARSGRPRGRSAGMWP 440
Query: 385 AMSAWL 368
AMSAWL
Sbjct: 441 AMSAWL 458
Score = 87.2 bits (184), Expect(3) = 2e-071
Identities = 38/44 (86%), Positives = 40/44 (90%)
Frame = -2 / +3
Query: 365 SMPATASAPSEGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMAVRF 234
S+PATASAPSEGRGAQ*MPL AHT P QL+VKLDGSEKMAVRF
Sbjct: 462 SIPATASAPSEGRGAQ*MPL*AHTFEPTQLDVKLDGSEKMAVRF 593
Score = 83.5 bits (176), Expect(3) = e-110
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +3 / -1
Query: 369 NHADIAGHIPADLPLGVPDLALLHLNSNRFCGV 467
NHADIAGHIPADLPLG+PDLALLHLNSNRFCGV
Sbjct: 457 NHADIAGHIPADLPLGLPDLALLHLNSNRFCGV 359
>gb|CW258312.1|CW258312 104_724_11227807_148_35168_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227807, DNA
sequence
Length = 598
Score = 306 bits (663), Expect(3) = e-102
Identities = 125/139 (89%), Positives = 131/139 (94%)
Frame = +3 / -3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRFVGAFPAVVL LP+LRYLDLRFNDFEGPIPP +FDRPLDAI+LNSNRLRGPIP NL
Sbjct: 419 SNNRFVGAFPAVVLGLPALRYLDLRFNDFEGPIPPAVFDRPLDAIILNSNRLRGPIPGNL 240
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSPASV+VLAHNRLGGCIPPSIGRMA TLNEIVLIDDDLTGCVPPQVGLL K+TVFDVS
Sbjct: 239 GNSPASVVVLAHNRLGGCIPPSIGRMADTLNEIVLIDDDLTGCVPPQVGLLRKVTVFDVS 60
Query: 876 GNHLQGPLPPAVGGMAVLQ 932
GNHLQGPLPP V GMA +Q
Sbjct: 59 GNHLQGPLPPTVAGMAAVQ 3
Score = 184 bits (397), Expect(2) = 2e-071
Identities = 76/97 (78%), Positives = 82/97 (84%)
Frame = -3 / +1
Query: 934 CWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRTISLSVAAILPIDG 755
C AIP T GGSGP RW PLTSNTV+F+S PTCGGTQPVRSSSM TISLSV+AILPIDG
Sbjct: 1 C*TAAIPATVGGSGPWRWFPLTSNTVTFLSNPTCGGTQPVRSSSMSTISLSVSAILPIDG 180
Query: 754 GMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
G+ PP RLCAST+T+AGE PR GMGPRRRLELR MA
Sbjct: 181 GIHPPSRLCASTTTDAGEFPRFPGMGPRRRLELRMMA 291
Score = 106 bits (227), Expect(2) = 2e-071
Identities = 46/66 (69%), Positives = 46/66 (69%)
Frame = -3 / +1
Query: 565 GSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARSGTPRGRSAGMWP 386
G TTAGKAPTK VSGSTPQKRLELRWSSARSG PRGRSAGMWP
Sbjct: 370 GRPRTTAGKAPTKRLLLRSSSWRRRRRRKVSGSTPQKRLELRWSSARSGRPRGRSAGMWP 549
Query: 385 AMSAWL 368
AMSAWL
Sbjct: 550 AMSAWL 567
Score = 85.8 bits (181), Expect(2) = 3e-021
Identities = 41/85 (48%), Positives = 47/85 (55%)
Frame = -2 / +3
Query: 932 LEDGHPADGGRERALKVVAADVEHRELREQADLRRDAAGXXXXXXXXXXERGRHPPYXXX 753
L HP+DG RERAL+VV D++HR L +Q DLRRDAA ER RHPP
Sbjct: 3 LNGSHPSDGRRERALEVVPTDIKHRHLPKQPDLRRDAASEVVVNEHDLIERIRHPPNRRR 182
Query: 752 XXXXXXXXXEHEHGGRRVAEVGRDG 678
EH HG RRV +V RDG
Sbjct: 183 DTSTKPVVREHHHGRRRVPKVPRDG 257
Score = 83.5 bits (176), Expect(3) = e-102
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +3 / -3
Query: 369 NHADIAGHIPADLPLGVPDLALLHLNSNRFCGV 467
NHADIAGHIPADLPLG+PDLALLHLNSNRFCGV
Sbjct: 566 NHADIAGHIPADLPLGLPDLALLHLNSNRFCGV 468
Score = 40.5 bits (82), Expect(2) = 3e-021
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2 / +3
Query: 467 HPAEAVGVEVEQRQVGHA 414
HPAEAVGVEVEQR+VG A
Sbjct: 468 HPAEAVGVEVEQREVGEA 521
Score = 24.0 bits (46), Expect(3) = e-102
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 340 GALAVAGIDL 369
GALAVAGIDL
Sbjct: 596 GALAVAGIDL 567
>gb|CW075039.1|CW075039 104_354_10806217_116_31831_121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806217, DNA
sequence
Length = 670
Score = 236 bits (509), Expect(3) = 3e-076
Identities = 99/160 (61%), Positives = 116/160 (72%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLA+LHLNSNRFCG+ SNNRFVG FP VVL LPSLRYLDLRFNDF
Sbjct: 174 DLAVLHLNSNRFCGLVPRSLHRLHALHELDLSNNRFVGGFPDVVLRLPSLRYLDLRFNDF 353
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+P LFDRPLDAI +NSNR R IP N+GNSPASVLVLA+N GGC+P S+ M+ T
Sbjct: 354 EGPVPGDLFDRPLDAIFINSNRFRFRIPDNVGNSPASVLVLANNDFGGCLPASVANMSGT 533
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLP 902
L+EI+L++ L CVPP++ LT LTV D+S N L G +P
Sbjct: 534 LDEIILMNTGLKSCVPPELAALTGLTVLDLSFNKLMGAIP 653
Score = 91.8 bits (194), Expect(5) = 1e-031
Identities = 45/89 (50%), Positives = 57/89 (64%)
Frame = -3 / -1
Query: 910 TAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRTISLSVAAILPIDGGMQPPRRL 731
++ G P L L S+TV VS + GGTQ + MR IS SV +L D G QPP+ L
Sbjct: 661 SSSGMAPMSLLKLRSSTVRPVSAASSGGTQDLSPVFMRMISSSVPDMLATDAGRQPPKSL 482
Query: 730 CASTSTEAGELPRLAGMGPRRRLELRRMA 644
ASTST+AGELP L+G+ R+RLEL +MA
Sbjct: 481 LASTSTDAGELPTLSGIRKRKRLELMKMA 395
Score = 62.9 bits (131), Expect(3) = 3e-076
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1 / +3
Query: 253 SDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
SDP N T +W+GP+VCAY G+YCAP P D L+V
Sbjct: 3 SDPYNVTGSWSGPDVCAYGGVYCAPSPQDPGLSV 104
Score = 37.7 bits (76), Expect(5) = 1e-031
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -3 / -1
Query: 472 GSTPQKRLELRWSSARSGT 416
G+ PQKRLELRWS+ARS +
Sbjct: 223 GTRPQKRLELRWSTARSAS 167
Score = 29.9 bits (59), Expect(5) = 1e-031
Identities = 16/27 (59%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 332 GRGAQ*MPLYAHTLGPAQLEVKLDGSE 252
G GAQ* P AHT GP V L GSE
Sbjct: 82 GDGAQ*TPP*AHTSGPDHEPVTL*GSE 2
Score = 27.6 bits (54), Expect(5) = 1e-031
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3 / -1
Query: 433 SARSGTPRGRSAGMWPAMSAWL 368
S R ++G WPA SAWL
Sbjct: 187 STARSASRPSASGRWPARSAWL 122
Score = 27.6 bits (54), Expect(3) = 3e-076
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 369 NHADIAGHIPADL 407
NHAD+AGH+P L
Sbjct: 123 NHADLAGHLPEAL 161
Score = 24.0 bits (46), Expect(5) = 1e-031
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / -1
Query: 565 GSASTTAGKAPTK 527
G STT+GK PTK
Sbjct: 316 GRRSTTSGKPPTK 278
>gb|CW327394.1|CW327394 104_823_11478723_148_35976_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478723, DNA
sequence
Length = 505
Score = 122 bits (261), Expect(3) = 4e-068
Identities = 48/66 (72%), Positives = 49/66 (74%)
Frame = +1 / +1
Query: 172 AAAQPPTNPXXXXXXXXXXXWKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALA 351
+A PT P WKRTAIFSDPSNFTSNW G NVCAYNGIYCAPRPSDGALA
Sbjct: 34 SAQPAPTTPALQAAYTALQSWKRTAIFSDPSNFTSNWVGSNVCAYNGIYCAPRPSDGALA 213
Query: 352 VAGIDL 369
VAGIDL
Sbjct: 214 VAGIDL 231
Score = 106 bits (227), Expect(2) = 3e-042
Identities = 46/66 (69%), Positives = 46/66 (69%)
Frame = -3 / -3
Query: 565 GSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARSGTPRGRSAGMWP 386
G TTAGKAPTK VSGSTPQKRLELRWSSARSG PRGRSAGMWP
Sbjct: 428 GRPRTTAGKAPTKRLLLRSSSWRRRRRRKVSGSTPQKRLELRWSSARSGRPRGRSAGMWP 249
Query: 385 AMSAWL 368
AMSAWL
Sbjct: 248 AMSAWL 231
Score = 93.6 bits (198), Expect(3) = 4e-068
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPL 641
SNNRFVGAFPAVVL LP+LRYLDLR NDFEGPIPP +FDRPL
Sbjct: 379 SNNRFVGAFPAVVLGLPALRYLDLRVNDFEGPIPPAVFDRPL 504
Score = 87.2 bits (184), Expect(2) = 3e-042
Identities = 38/44 (86%), Positives = 40/44 (90%)
Frame = -2 / -3
Query: 365 SMPATASAPSEGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMAVRF 234
S+PATASAPSEGRGAQ*MPL AHT P QL+VKLDGSEKMAVRF
Sbjct: 227 SIPATASAPSEGRGAQ*MPL*AHTFEPTQLDVKLDGSEKMAVRF 96
Score = 83.5 bits (176), Expect(3) = 4e-068
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPLGVPDLALLHLNSNRFCGV 467
NHADIAGHIPADLPLG+PDLALLHLNSNRFCGV
Sbjct: 232 NHADIAGHIPADLPLGLPDLALLHLNSNRFCGV 330
>gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475594, DNA
sequence
Length = 674
Score = 257 bits (555), Expect = 3e-067
Identities = 107/155 (69%), Positives = 124/155 (80%)
Frame = +3 / +1
Query: 522 NRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGN 701
NR VGAFPAVVL LPSL++LDLRFNDFEG IPP LFDRPLDAI LN NRLR P+P N GN
Sbjct: 1 NRLVGAFPAVVLDLPSLKFLDLRFNDFEGAIPPALFDRPLDAIFLNHNRLRSPLPENFGN 180
Query: 702 SPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGN 881
SPASV+VLA N GGC+P S+G M+ATLNEI+LI++ L CVPP+VGLL ++TVFDVS N
Sbjct: 181 SPASVIVLADNSFGGCLPASLGNMSATLNEILLINNGLDSCVPPEVGLLREVTVFDVSFN 360
Query: 882 HLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
L GPLP V GM ++QL+VA N L G VP A+C
Sbjct: 361 ALVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAIC 465
Score = 127 bits (272), Expect(2) = 4e-030
Identities = 64/112 (57%), Positives = 71/112 (63%)
Frame = -3 / -1
Query: 979 ADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSM 800
A GT P R AT SC IP T GSGP L LTS TV+ SRPT GGTQ R M
Sbjct: 458 ASGTAPDRRLCATSSCSTLRIPATCCGSGPTSALKLTSKTVTSRSRPTSGGTQESRPLLM 279
Query: 799 RTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
R ISLSVA +LP G PP+ L AST T+AGELP+ +G G RRRL LR+MA
Sbjct: 278 RRISLSVADMLPRLAGRHPPKLLSASTMTDAGELPKFSGRGDRRRLWLRKMA 123
Score = 25.8 bits (50), Expect(2) = 4e-030
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTK 527
+G + TTAGKAPT+
Sbjct: 47 DGRSRTTAGKAPTR 6
>gb|CW327393.1|CW327393 104_823_11478723_116_35975_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478723, DNA
sequence
Length = 430
Score = 250 bits (541), Expect(2) = 4e-067
Identities = 103/117 (88%), Positives = 108/117 (92%)
Frame = +3 / -3
Query: 636 PLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDL 815
PLDA++LNSN LR PIP NLGNSPASV+VLAHNRLGGCIPPSIGRMA TLNEIVLIDDDL
Sbjct: 428 PLDAMILNSNSLRDPIPGNLGNSPASVVVLAHNRLGGCIPPSIGRMADTLNEIVLIDDDL 249
Query: 816 TGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
TGCVPPQVGLL K+TVFDVSGNHLQGPLPP V GMA +QQLNVAGNLLRGPVP AVC
Sbjct: 248 TGCVPPQVGLLRKVTVFDVSGNHLQGPLPPTVAGMAAVQQLNVAGNLLRGPVPPAVC 78
Score = 215 bits (463), Expect(2) = 2e-056
Identities = 90/114 (78%), Positives = 96/114 (84%)
Frame = -3 / +1
Query: 985 HTADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSS 806
HTA GTGPLSRFPATLSC AIP T GGSGP RW PLTSNTV+F+S PTCGGTQPVRSS
Sbjct: 79 HTAGGTGPLSRFPATLSC*TAAIPATVGGSGPWRWFPLTSNTVTFLSNPTCGGTQPVRSS 258
Query: 805 SMRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
SM TISLSV+AILPIDGG+ PP RLCAST+T+AGE PR GMG RR LELR MA
Sbjct: 259 SMSTISLSVSAILPIDGGIHPPSRLCASTTTDAGEFPRFPGMGSRRLLELRIMA 420
Score = 115 bits (245), Expect(3) = 9e-029
Identities = 49/79 (62%), Positives = 55/79 (69%)
Frame = -2 / +3
Query: 1001 RPLQAAHRRRHGAPEQVPGDVELLEDGHPADGGRERALKVVAADVEHRELREQADLRRDA 822
RPLQ AHRRRHGAPEQVP +ELL HP+DG RERAL+VV D++HR L +Q DLRRDA
Sbjct: 63 RPLQRAHRRRHGAPEQVPSHIELLNGSHPSDGRRERALEVVPTDIKHRHLPKQPDLRRDA 242
Query: 821 AGXXXXXXXXXXERGRHPP 765
A ER RHPP
Sbjct: 243 ASEVVVNEHDLIERIRHPP 299
Score = 27.2 bits (53), Expect(3) = 9e-029
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2 / +3
Query: 722 HEHGGRRVAEVGRDG 678
H HG RRV +V RDG
Sbjct: 342 HHHGRRRVPKVPRDG 386
Score = 26.7 bits (52), Expect(2) = 4e-067
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / -3
Query: 1024 KDNFFTXCPGCAV 1062
+DNFFT PGC V
Sbjct: 44 EDNFFTSRPGCPV 6
Score = 26.3 bits (51), Expect(2) = 2e-056
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1 / +3
Query: 1062 DRAPRAXGEEVVL 1024
D APRA GEEVVL
Sbjct: 6 DGAPRARGEEVVL 44
Score = 24.4 bits (47), Expect(3) = 9e-029
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2 / +1
Query: 1061 TAHPGHXVKKLS 1026
T HPG VKKLS
Sbjct: 7 TGHPGREVKKLS 42
>gb|CL147776.1|CL147776 104_327_10592627_148_31780_135 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592627, DNA
sequence
Length = 604
Score = 122 bits (261), Expect(4) = 7e-062
Identities = 48/66 (72%), Positives = 49/66 (74%)
Frame = +1 / -3
Query: 172 AAAQPPTNPXXXXXXXXXXXWKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALA 351
+A PT P WKRTAIFSDPSNFTSNW G NVCAYNGIYCAPRPSDGALA
Sbjct: 428 SAQPAPTTPALQAAYTALQSWKRTAIFSDPSNFTSNWVGSNVCAYNGIYCAPRPSDGALA 249
Query: 352 VAGIDL 369
VAGIDL
Sbjct: 248 VAGIDL 231
Score = 106 bits (227), Expect(3) = 3e-046
Identities = 46/66 (69%), Positives = 46/66 (69%)
Frame = -3 / +1
Query: 565 GSASTTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLELRWSSARSGTPRGRSAGMWP 386
G TTAGKAPTK VSGSTPQKRLELRWSSARSG PRGRSAGMWP
Sbjct: 34 GRPRTTAGKAPTKRLLLRSSSWRRRRRRKVSGSTPQKRLELRWSSARSGRPRGRSAGMWP 213
Query: 385 AMSAWL 368
AMSAWL
Sbjct: 214 AMSAWL 231
Score = 87.2 bits (184), Expect(3) = 3e-046
Identities = 38/44 (86%), Positives = 40/44 (90%)
Frame = -2 / +1
Query: 365 SMPATASAPSEGRGAQ*MPLYAHTLGPAQLEVKLDGSEKMAVRF 234
S+PATASAPSEGRGAQ*MPL AHT P QL+VKLDGSEKMAVRF
Sbjct: 235 SIPATASAPSEGRGAQ*MPL*AHTFEPTQLDVKLDGSEKMAVRF 366
Score = 83.5 bits (176), Expect(4) = 7e-062
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = +3 / -3
Query: 369 NHADIAGHIPADLPLGVPDLALLHLNSNRFCGV 467
NHADIAGHIPADLPLG+PDLALLHLNSNRFCGV
Sbjct: 230 NHADIAGHIPADLPLGLPDLALLHLNSNRFCGV 132
Score = 62.0 bits (129), Expect(4) = 7e-062
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +3 / -3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFN 596
SNNRFVGAFPAVVL LP+LRYLDLRFN
Sbjct: 83 SNNRFVGAFPAVVLGLPALRYLDLRFN 3
Score = 35.4 bits (71), Expect(3) = 3e-046
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -1 / +3
Query: 105 AASCAGSGRSGDHGRQPRRCAGGGAVVLVG 16
AAS +G RSGDHG + GGG LVG
Sbjct: 501 AASGSGGARSGDHGVRTGGARGGGVRFLVG 590
Score = 28.6 bits (56), Expect(4) = 7e-062
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2 / -1
Query: 17 PTKTTAPPPAHRRGCRP*SPLLPLPAQE 100
PTK PPP P*SPLL P E
Sbjct: 589 PTKNLTPPPRAPPVRTP*SPLLAPPLPE 506
>gb|CW216099.1|CW216099 104_648_11194932_148_37119_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194932, DNA
sequence
Length = 682
Score = 237 bits (512), Expect = 2e-061
Identities = 97/182 (53%), Positives = 125/182 (68%)
Frame = +3 / +1
Query: 441 LNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPP 620
LNSNRFCGV SNNRFVG FPA VL + L YLD+RFNDF+GPIPP
Sbjct: 1 LNSNRFCGVIPEEITNMTELYELDASNNRFVGPFPAAVLGVRKLSYLDIRFNDFDGPIPP 180
Query: 621 PLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVL 800
LF +P DAI LN+NR IP +G + A+V+VLA+N+LGGCIP SIG AATL++ +
Sbjct: 181 ELFLKPYDAIFLNNNRFTSGIPETIGKTKATVIVLANNQLGGCIPRSIGEAAATLDQFIF 360
Query: 801 IDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSA 980
I++ +TGC+P + GLLT TVFDVS N L G +PP + G++ ++QL+++ N G VPS
Sbjct: 361 INNSITGCLPVETGLLTNATVFDVSDNALTGSIPPTLAGLSKVEQLDLSRNRFTGDVPSG 540
Query: 981 VC 986
VC
Sbjct: 541 VC 546
Score = 87.2 bits (184), Expect(2) = 2e-021
Identities = 50/110 (45%), Positives = 59/110 (53%)
Frame = -3 / -3
Query: 973 GTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRT 794
GT P++ SC P + GG P R L LTSNTV+ V P G QPV M+
Sbjct: 533 GTSPVNLLRDRSSCSTLDNPASVGGIEPVRALSLTSNTVALVRSPVSTGRQPVMLLLMKM 354
Query: 793 ISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
SVAA P+ GMQPP L AST T A LP ++GM RL LR+MA
Sbjct: 353 NWSSVAAASPMLRGMQPPSWLLASTITVAFVLPMVSGMPEVNRLLLRKMA 204
Score = 37.3 bits (75), Expect(2) = 2e-021
Identities = 18/38 (47%), Positives = 18/38 (47%)
Frame = -3 / -3
Query: 556 STTAGKAPTKXXXXXXXXXXXXXXXSVSGSTPQKRLEL 443
ST AGK PTK SG TPQKRLEL
Sbjct: 116 STAAGKGPTKRLLLASSS*SSVMFVISSGMTPQKRLEL 3
>gb|BG103283.1|BG103283 RHIZ2_18_E05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 424
Score = 220 bits (474), Expect = 4e-056
Identities = 91/124 (73%), Positives = 104/124 (83%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNR VGAFPAVVL LPSL++LDLRFNDFEG IPP LFDRPLDAI LN NRLR P+P N
Sbjct: 48 SNNRLVGAFPAVVLDLPSLKFLDLRFNDFEGAIPPALFDRPLDAIFLNHNRLRSPLPDNF 227
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
GNSPASV+VLA N GGC+P S+G M+ATLNEI+LI++ L CVPP+VGLL ++TVFDVS
Sbjct: 228 GNSPASVIVLADNSFGGCLPASLGNMSATLNEILLINNGLDSCVPPEVGLLREVTVFDVS 407
Query: 876 GNHL 887
N L
Sbjct: 408 FNAL 419
Score = 99.6 bits (211), Expect(2) = 9e-022
Identities = 48/79 (60%), Positives = 55/79 (69%)
Frame = -3 / -1
Query: 880 LPLTSNTVSFVSRPTCGGTQPVRSSSMRTISLSVAAILPIDGGMQPPRRLCASTSTEAGE 701
L LTS TV+ SRPT GGTQ R MR ISLSVA +LP G PP+ L A T T+AGE
Sbjct: 412 LKLTSKTVTSRSRPTSGGTQESRPLLMRRISLSVADMLPRLAGRHPPKLLSARTMTDAGE 233
Query: 700 LPRLAGMGPRRRLELRRMA 644
LP+L+G G RRRL LR+MA
Sbjct: 232 LPKLSGRGDRRRLWLRKMA 176
Score = 25.8 bits (50), Expect(2) = 9e-022
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3 / -1
Query: 568 EGSASTTAGKAPTK 527
+G + TTAGKAPT+
Sbjct: 100 DGRSRTTAGKAPTR 59
>gb|CW265811.1|CW265811 104_735_11232087_148_35267_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232087, DNA
sequence
Length = 515
Score = 194 bits (418), Expect(2) = 7e-050
Identities = 79/87 (90%), Positives = 81/87 (93%)
Frame = +3 / +1
Query: 726 AHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPP 905
AHNRLGGCIPPSIGRMA TLNEIVLIDDDLTGCVPPQVGLL K+TVFDVSGNHLQGPLPP
Sbjct: 1 AHNRLGGCIPPSIGRMADTLNEIVLIDDDLTGCVPPQVGLLRKVTVFDVSGNHLQGPLPP 180
Query: 906 AVGGMAVLQQLNVAGNLLRGPVPSAVC 986
V GMA +QQLNVAGNLLRGPVP AVC
Sbjct: 181 TVAGMAAVQQLNVAGNLLRGPVPPAVC 261
Score = 171 bits (368), Expect(2) = 2e-043
Identities = 70/86 (81%), Positives = 74/86 (86%)
Frame = -3 / -1
Query: 985 HTADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSS 806
HTA GTGPLSRFPATLSC AIP T GGSGP RW PLTSNTV+F+S PTCGGTQPVRSS
Sbjct: 260 HTAGGTGPLSRFPATLSC*TAAIPATVGGSGPWRWFPLTSNTVTFLSNPTCGGTQPVRSS 81
Query: 805 SMRTISLSVAAILPIDGGMQPPRRLC 728
SM TISLSV+AILPIDGG+ PP RLC
Sbjct: 80 SMSTISLSVSAILPIDGGIHPPSRLC 3
Score = 115 bits (245), Expect = 2e-024
Identities = 49/79 (62%), Positives = 55/79 (69%)
Frame = -2 / -3
Query: 1001 RPLQAAHRRRHGAPEQVPGDVELLEDGHPADGGRERALKVVAADVEHRELREQADLRRDA 822
RPLQ AHRRRHGAPEQVP +ELL HP+DG RERAL+VV D++HR L +Q DLRRDA
Sbjct: 276 RPLQRAHRRRHGAPEQVPSHIELLNGSHPSDGRRERALEVVPTDIKHRHLPKQPDLRRDA 97
Query: 821 AGXXXXXXXXXXERGRHPP 765
A ER RHPP
Sbjct: 96 ASEVVVNEHDLIERIRHPP 40
Score = 26.3 bits (51), Expect(2) = 2e-043
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1 / -3
Query: 1062 DRAPRAXGEEVVL 1024
D APRA GEEVVL
Sbjct: 333 DGAPRARGEEVVL 295
Score = 25.4 bits (49), Expect(2) = 7e-050
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 1025 RTTSSPXALGARS 1063
RTTSSP ALGA S
Sbjct: 296 RTTSSPRALGAPS 334
>gb|CW063943.1|CW063943 104_309_10522288_114_30136 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522288, DNA
sequence
Length = 661
Score = 190 bits (409), Expect = 4e-047
Identities = 81/141 (57%), Positives = 102/141 (72%)
Frame = +3 / -2
Query: 564 PSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLG 743
P+++Y+DLRFN G +P LFD+PLDAI LN N +P NLGNSPASV+VLA+ RL
Sbjct: 660 PNIKYVDLRFNSLCGAVPAALFDKPLDAIFLNDNHFDFELPDNLGNSPASVVVLANLRLR 481
Query: 744 GCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMA 923
GCIP SIGRMA TLNE+V+++ L C+P +VG L +LTV D+S N LQG LP ++ GM
Sbjct: 480 GCIPESIGRMAGTLNELVVLNAGLRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMH 301
Query: 924 VLQQLNVAGNLLRGPVPSAVC 986
LQQL+VA N L G +P VC
Sbjct: 300 ELQQLDVAHNELWGHIPEGVC 238
Score = 103 bits (220), Expect = 4e-021
Identities = 55/113 (48%), Positives = 64/113 (56%)
Frame = -3 / +2
Query: 982 TADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSS 803
T G P S AT SCW + IP GS P L L S TVS + PT G Q R +
Sbjct: 242 TPSGICPHSSLCATSSCWSSCIPAMDSGSIPCSSLKLRSRTVSSRNHPTSCGMQDRRPAL 421
Query: 802 MRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
T SLSV AI P+ GM P RR AST+T+AGELPRL+G + L LR+MA
Sbjct: 422 RTTSSLSVPAIRPMLSGMHPRRRRFASTTTDAGELPRLSGSSKSKWLSLRKMA 580
>gb|CN125369.1|CN125369 RHOH1_10_D11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_D11_A002 5', mRNA sequence
Length = 831
Score = 135 bits (289), Expect(3) = 4e-046
Identities = 56/93 (60%), Positives = 69/93 (74%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PLDAI L+ N +P +L
Sbjct: 551 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPLDAIFLSDNDFDFELPDDL 730
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEI 794
GNSPASV+VLA+ RL GCIP SIGRMA TLNE+
Sbjct: 731 GNSPASVVVLANLRLRGCIPESIGRMAGTLNEL 829
Score = 56.5 bits (117), Expect(3) = 4e-046
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ +I DP N T+NW GP+VCAY G+YC P D
Sbjct: 272 KRSITEDPKNLTANWCGPDVCAYFGVYCTTAPDD 373
Score = 33.6 bits (67), Expect(3) = 4e-046
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 458 DLALLHLNSNRFAG 499
>gb|CN126897.1|CN126897 RHOH1_19_G02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_G02_A002 5', mRNA sequence
Length = 813
Score = 130 bits (279), Expect(3) = 9e-045
Identities = 54/87 (62%), Positives = 64/87 (73%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PLDAI LN N +P NL
Sbjct: 548 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPLDAIFLNDNHFDFELPDNL 727
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMA 776
GNSPASV+VLA+ RL GCIP SIGRMA
Sbjct: 728 GNSPASVVVLANLRLRGCIPESIGRMA 808
Score = 56.5 bits (117), Expect(3) = 9e-045
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ +I DP N T+NW GP+VCAY G+YC P D
Sbjct: 269 KRSITEDPKNLTANWCGPDVCAYFGVYCTTAPDD 370
Score = 33.6 bits (67), Expect(3) = 9e-045
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 455 DLALLHLNSNRFAG 496
>gb|CW070964.1|CW070964 104_323_10591330_114_30474 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591330, DNA
sequence
Length = 621
Score = 161 bits (347), Expect(2) = 1e-041
Identities = 68/157 (43%), Positives = 103/157 (65%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN F GAFP V+ L L +LDLRFN + G +P P+F ++A+ LN+N G IP
Sbjct: 148 SNNNFSGAFPDSVVPLGGLLFLDLRFNRYAGTVPAPVFALTVEALFLNNNGFGGRIPDTF 327
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G++ A LV+A+N+ G IP SI +ATL+E++ +++ L+GC+P +VGL+ L VF+
Sbjct: 328 GSTGAQYLVVANNQFTGPIPRSIYNTSATLSEVLFLNNRLSGCLPYKVGLVEGLAVFNAG 507
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
GN + GP+P + G + +++LN+A N L G VP +C
Sbjct: 508 GNEITGPIPLSFGCLRDVEELNLASNQLYGQVPDVLC 618
Score = 29.9 bits (59), Expect(2) = 1e-041
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 420 PDLALLHLNSNRFCG 464
PDLAL H NSN F G
Sbjct: 55 PDLALFHANSNNFSG 99
>gb|CW337923.1|CW337923 104_838_11484471_116_36126_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484471, DNA
sequence
Length = 668
Score = 170 bits (366), Expect = 3e-041
Identities = 74/127 (58%), Positives = 91/127 (71%)
Frame = +3 / +1
Query: 606 GPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATL 785
G +P LFD+PLDAI LN N +P NLGNSPASV+VLA+ RL GCIP SIGRMA TL
Sbjct: 4 GAVPAALFDKPLDAIFLNDNHFDFELPDNLGNSPASVVVLANLRLRGCIPESIGRMAGTL 183
Query: 786 NEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRG 965
NE+V+++ L C+P +VG L +LTV D+S N LQG LP ++ GM LQQL+VA N L G
Sbjct: 184 NELVVLNAGLRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWG 363
Query: 966 PVPSAVC 986
+P VC
Sbjct: 364 HIPEGVC 384
Score = 103 bits (220), Expect = 4e-021
Identities = 55/113 (48%), Positives = 64/113 (56%)
Frame = -3 / -1
Query: 982 TADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSS 803
T G P S AT SCW + IP GS P L L S TVS + PT G Q R +
Sbjct: 380 TPSGICPHSSLCATSSCWSSCIPAMDSGSIPCSSLKLRSRTVSSRNHPTSCGMQDRRPAL 201
Query: 802 MRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRLELRRMA 644
T SLSV AI P+ GM P RR AST+T+AGELPRL+G + L LR+MA
Sbjct: 200 RTTSSLSVPAIRPMLSGMHPRRRRFASTTTDAGELPRLSGSSKSKWLSLRKMA 42
>gb|CX613512.1|CX613512 GABR1_8_C12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_C12_A002 5', mRNA sequence
Length = 795
Score = 118 bits (252), Expect(3) = 4e-041
Identities = 48/80 (60%), Positives = 58/80 (72%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PLDAI LN N +P NL
Sbjct: 555 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPLDAIFLNDNHFDFELPDNL 734
Query: 696 GNSPASVLVLAHNRLGGCIP 755
GNSPASV+VLA+ RL GCIP
Sbjct: 735 GNSPASVVVLANLRLRGCIP 794
Score = 56.5 bits (117), Expect(3) = 4e-041
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ +I DP N T+NW GP+VCAY G+YC P D
Sbjct: 276 KRSITEDPKNLTANWCGPDVCAYFGVYCTTAPDD 377
Score = 33.6 bits (67), Expect(3) = 4e-041
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 462 DLALLHLNSNRFAG 503
>gb|CW491052.1|CW491052 fsbb001f280m01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f280m01, DNA
sequence
Length = 482
Score = 163 bits (350), Expect(2) = 7e-041
Identities = 67/112 (59%), Positives = 84/112 (75%)
Frame = +3 / +3
Query: 651 LLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVP 830
L + NRLR +P N+GNSPASVLVLAHN GGC+P S+ M+ TLNEI+LI++ LT C P
Sbjct: 27 LPHHNRLRFQLPDNIGNSPASVLVLAHNSFGGCLPASVANMSGTLNEILLINNGLTSCFP 206
Query: 831 PQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
P++GLL +LTV DVS N L GPLPP + M L+QL+VA NLL G +PS +C
Sbjct: 207 PEIGLLRELTVLDVSFNQLAGPLPPELALMRKLEQLDVAHNLLTGAIPSGIC 362
Score = 119 bits (254), Expect = 9e-026
Identities = 57/108 (52%), Positives = 66/108 (61%)
Frame = -3 / -2
Query: 985 HTADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSS 806
H DG P+SR AT SC + ++GGSGP WL LTS+TVS SRP GG Q VR
Sbjct: 361 HIPDGMAPVSRLCATSSCSSFLMSASSGGSGPASWLKLTSSTVSSRSRPISGGKQEVRPL 182
Query: 805 SMRTISLSVAAILPIDGGMQPPRRLCASTSTEAGELPRLAGMGPRRRL 662
M ISLSV +L G PP+ LCA T T+AGELP L+G RRRL
Sbjct: 181 LMSRISLSVPDMLATLAGRHPPKLLCARTRTDAGELPMLSGSWKRRRL 38
Score = 26.3 bits (51), Expect(2) = 7e-041
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / +1
Query: 624 LFDRPLDAILLNS 662
LFDRPLDAI L +
Sbjct: 1 LFDRPLDAIFLTT 39
>gb|BE355392.1|BE355392 DG1_114_C12.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 164 bits (353), Expect = 2e-039
Identities = 69/157 (43%), Positives = 103/157 (65%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN F GAFP V+ L L +LDLRFN + G +P P+F ++A+ LN+N G IP
Sbjct: 51 SNNNFSGAFPDSVVPLGGLLFLDLRFNRYAGTVPAPVFALTVEALFLNNNGFGGRIPDTF 230
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G++ A LV+A+N+ G IP SI +ATL+E++ +++ L+GC+P +VGL+ L VFD
Sbjct: 231 GSTGAQYLVVANNQFTGPIPRSIYNTSATLSEVLFLNNRLSGCLPYEVGLVEGLAVFDAG 410
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
GN + GP+P + G + +++LN+A N L G VP +C
Sbjct: 411 GNEITGPIPLSFGCLRDVEELNLASNQLYGQVPDVLC 521
>gb|CW459001.1|CW459001 fsbb001f205i16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205i16, DNA
sequence
Length = 505
Score = 149 bits (321), Expect(2) = 4e-039
Identities = 61/104 (58%), Positives = 76/104 (73%)
Frame = +3 / -2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PLDAI LN N +P NL
Sbjct: 315 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPLDAIFLNDNHFDFELPDNL 136
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCV 827
GNSPASV+VLA+ RL GCIP SIGRMA TLNE+V+++ L C+
Sbjct: 135 GNSPASVVVLANLRLRGCIPESIGRMAGTLNELVVLNAGLRSCI 4
Score = 33.6 bits (67), Expect(2) = 4e-039
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / -2
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 408 DLALLHLNSNRFAG 367
>gb|CN126523.1|CN126523 RHOH1_17_D12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_D12_A002 5', mRNA sequence
Length = 781
Score = 86.3 bits (182), Expect(4) = 9e-039
Identities = 32/72 (44%), Positives = 52/72 (72%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+ G FP+ +L LP+++Y+D+RFN+F G +P +FD+ +DA+ +N+N +P +
Sbjct: 489 SNNQLSGPFPSQLLCLPNVQYVDIRFNNFCGEVPAAIFDKKIDALFINNNHFEFSLPDSF 668
Query: 696 GNSPASVLVLAH 731
NS ASV+VLA+
Sbjct: 669 TNSTASVIVLAN 704
Score = 57.4 bits (119), Expect(4) = 9e-039
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ AI DP T NW GP+VC Y G+YCAP P D
Sbjct: 210 KRAITDDPKKLTKNWCGPDVCNYFGVYCAPAPDD 311
Score = 40.0 bits (81), Expect(4) = 9e-039
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3 / +3
Query: 735 RLGGCIPPSIGRMAATLNEIVLI 803
R+ GC+P SIG MA TLNE++L+
Sbjct: 711 RVSGCLPSSIGDMAGTLNELILL 779
Score = 34.5 bits (69), Expect(4) = 9e-039
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
DLA+ HLNSNRFCG
Sbjct: 396 DLAVFHLNSNRFCG 437
>gb|CW182245.1|CW182245 104_597_11163965_148_36660_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163965, DNA
sequence
Length = 617
Score = 160 bits (345), Expect = 3e-038
Identities = 68/157 (43%), Positives = 102/157 (64%)
Frame = +3 / -3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN GAFP V+ L L +LDLRFN + G +P P+F ++A+ LN+N G IP
Sbjct: 564 SNNNSSGAFPDSVVPLGGLLFLDLRFNRYAGTVPAPVFALTVEALFLNNNGFGGRIPDTF 385
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G++ A LV+A+N+ G IP SI +ATL+E++ +++ L+GC+P +VGL+ L VFD
Sbjct: 384 GSTGAQYLVVANNQFTGPIPRSIYNTSATLSEVLFLNNRLSGCLPYEVGLVEGLAVFDAG 205
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
GN + GP+P + G + +++LN+A N L G VP +C
Sbjct: 204 GNEITGPIPLSFGCLRDVEELNLASNQLYGQVPDVLC 94
>gb|CW293035.1|CW293035 104_773_11414430_148_35592_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414430, DNA
sequence
Length = 336
Score = 149 bits (320), Expect(2) = 7e-037
Identities = 61/69 (88%), Positives = 63/69 (91%)
Frame = +3 / +3
Query: 780 TLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLL 959
TLNEIVLIDDDLTGCVPPQVGLL K+TVFDVSGNHLQGPLPP V GMA +QQLNV GNLL
Sbjct: 6 TLNEIVLIDDDLTGCVPPQVGLLRKVTVFDVSGNHLQGPLPPTVAGMAAVQQLNVDGNLL 185
Query: 960 RGPVPSAVC 986
RGPVP AVC
Sbjct: 186 RGPVPPAVC 212
Score = 133 bits (286), Expect(2) = 4e-032
Identities = 55/70 (78%), Positives = 59/70 (84%)
Frame = -3 / -3
Query: 985 HTADGTGPLSRFPATLSCWRTAIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSS 806
HTA GTGPLSR P+TLSC AIP T GGSGP RW PLTSNTV+F+S PTCGGTQPVRSS
Sbjct: 211 HTAGGTGPLSRLPSTLSC*TAAIPATVGGSGPWRWFPLTSNTVTFLSNPTCGGTQPVRSS 32
Query: 805 SMRTISLSVA 776
SM TISLSV+
Sbjct: 31 SMSTISLSVS 2
Score = 101 bits (216), Expect(2) = 5e-022
Identities = 42/61 (68%), Positives = 48/61 (78%)
Frame = -2 / -2
Query: 1001 RPLQAAHRRRHGAPEQVPGDVELLEDGHPADGGRERALKVVAADVEHRELREQADLRRDA 822
RPLQ AHRRRHGAPEQV +ELL HP+DG RERAL+VV D++HR L +Q DLRRDA
Sbjct: 227 RPLQRAHRRRHGAPEQVTIHIELLNGSHPSDGRRERALEVVPTDIKHRHLPKQPDLRRDA 48
Query: 821 A 819
A
Sbjct: 47 A 45
Score = 26.7 bits (52), Expect(2) = 7e-037
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / +3
Query: 1024 KDNFFTXCPGCAV 1062
+DNFFT PGC V
Sbjct: 246 EDNFFTSRPGCPV 284
Score = 26.3 bits (51), Expect(2) = 4e-032
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -1 / -2
Query: 1062 DRAPRAXGEEVVL 1024
D APRA GEEVVL
Sbjct: 284 DGAPRARGEEVVL 246
Score = 24.4 bits (47), Expect(2) = 5e-022
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2 / -3
Query: 1061 TAHPGHXVKKLS 1026
T HPG VKKLS
Sbjct: 283 TGHPGREVKKLS 248
>gb|CW361212.1|CW361212 fsbb001f029k10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f029k10, DNA
sequence
Length = 706
Score = 82.6 bits (174), Expect(4) = 6e-036
Identities = 29/59 (49%), Positives = 44/59 (74%)
Frame = +3 / +1
Query: 735 RLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAV 911
R+ GC+P SIG MA TLNE++L++ ++ C+PP++G L KLTV D+S N++ G LP +
Sbjct: 529 RVSGCLPSSIGDMAGTLNELILLNSGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTI 705
Score = 55.6 bits (115), Expect(4) = 6e-036
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3 / +1
Query: 588 RFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAH 731
RFN+F G +P +FD+ +DA+ +N+N +P + NS ASV+VLA+
Sbjct: 379 RFNNFCGEVPAAIFDKKIDALFINNNHFEFSLPDSFTNSTASVIVLAN 522
Score = 35.9 bits (72), Expect(4) = 6e-036
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLR 590
SNN+ G FP+ +L LP+++Y+D+R
Sbjct: 186 SNNQLSGPFPSQLLCLPNVQYVDIR 260
Score = 34.5 bits (69), Expect(4) = 6e-036
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
DLA+ HLNSNRFCG
Sbjct: 93 DLAVFHLNSNRFCG 134
>gb|CW329487.1|CW329487 104_826_11479871_116_35995_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479871, DNA
sequence
Length = 703
Score = 113 bits (241), Expect(2) = 1e-034
Identities = 41/84 (48%), Positives = 61/84 (72%)
Frame = +3 / +1
Query: 735 RLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVG 914
R+ GC+P SIG MA TLNE++L++ ++ C+PP++G L KLTV D+S N++ G LP +G
Sbjct: 160 RVSGCLPSSIGDMAGTLNELILLNSGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIG 339
Query: 915 GMAVLQQLNVAGNLLRGPVPSAVC 986
M L+QL+VA N L G +P ++C
Sbjct: 340 NMRALEQLDVAHNRLAGEIPESIC 411
Score = 55.6 bits (115), Expect(2) = 1e-034
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3 / +1
Query: 588 RFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAH 731
RFN+F G +P +FD+ +DA+ +N+N +P + NS ASV+VLA+
Sbjct: 10 RFNNFCGEVPAAIFDKKIDALFINNNHFEFSLPDSFTNSTASVIVLAN 153
>gb|CL191252.1|CL191252 104_410_10906666_114_32533_045 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906666, DNA
sequence
Length = 562
Score = 94.5 bits (200), Expect(3) = 2e-034
Identities = 34/69 (49%), Positives = 51/69 (73%)
Frame = +3 / -1
Query: 735 RLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVG 914
R+ GC+P SIG MA TLNE++L++ ++ C+PP++G L KLTV D+S N++ G LP +G
Sbjct: 208 RVSGCLPSSIGDMAGTLNELILLNSGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIG 29
Query: 915 GMAVLQQLN 941
M L+QL+
Sbjct: 28 NMRALEQLD 2
Score = 55.6 bits (115), Expect(3) = 2e-034
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3 / -1
Query: 588 RFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAH 731
RFN+F G +P +FD+ +DA+ +N+N +P + NS ASV+VLA+
Sbjct: 358 RFNNFCGEVPAAIFDKKIDALFINNNHFEFSLPDSFTNSTASVIVLAN 215
Score = 35.9 bits (72), Expect(3) = 2e-034
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3 / -3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLR 590
SNN+ G FP+ +L LP+++Y+D+R
Sbjct: 551 SNNQLSGPFPSQLLCLPNVQYVDIR 477
>gb|CF429992.1|CF429992 PH1_25_A06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_A06_A002 5', mRNA sequence
Length = 794
Score = 86.3 bits (182), Expect(3) = 4e-032
Identities = 32/72 (44%), Positives = 52/72 (72%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+ G FP+ +L LP+++Y+D+RFN+F G +P +FD+ +DA+ +N+N +P +
Sbjct: 545 SNNQLSGPFPSQLLCLPNVQYVDIRFNNFCGEVPAAIFDKKIDALFINNNHFEFSLPDSF 724
Query: 696 GNSPASVLVLAH 731
NS ASV+VLA+
Sbjct: 725 TNSTASVIVLAN 760
Score = 57.4 bits (119), Expect(3) = 4e-032
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ AI DP T NW GP+VC Y G+YCAP P D
Sbjct: 266 KRAITDDPKKLTKNWCGPDVCNYFGVYCAPAPDD 367
Score = 34.5 bits (69), Expect(3) = 4e-032
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLA+ HLNSNRFCG
Sbjct: 452 DLAVFHLNSNRFCG 493
>gb|BE355969.1|BE355969 DG1_121_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 473
Score = 121 bits (259), Expect(3) = 4e-032
Identities = 50/83 (60%), Positives = 60/83 (72%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PLDAI LN N +P NL
Sbjct: 224 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPLDAIFLNDNHFDFELPDNL 403
Query: 696 GNSPASVLVLAHNRLGGCIPPSI 764
GNSPASV+VLA+ RL GCIP SI
Sbjct: 404 GNSPASVVVLANLRLRGCIPESI 472
Score = 33.6 bits (67), Expect(3) = 4e-032
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 131 DLALLHLNSNRFAG 172
Score = 23.1 bits (44), Expect(3) = 4e-032
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1 / +2
Query: 301 AYNGIYCAPRPSD 339
AY G+YC P D
Sbjct: 8 AYFGVYCTTAPDD 46
>gb|CD424558.1|CD424558 SA1_6_C12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_6_C12_A002 5', mRNA sequence
Length = 718
Score = 111 bits (238), Expect(2) = 5e-032
Identities = 40/84 (47%), Positives = 61/84 (72%)
Frame = +3 / +1
Query: 735 RLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVG 914
R+ GC+P SIG MA TLN+++L++ ++ C+PP++G L KLTV D+S N++ G LP +G
Sbjct: 142 RVSGCLPSSIGDMAGTLNDLILLNSGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIG 321
Query: 915 GMAVLQQLNVAGNLLRGPVPSAVC 986
M L+QL+VA N L G +P ++C
Sbjct: 322 NMRALEQLDVAHNRLAGEIPESIC 393
Score = 47.8 bits (98), Expect(2) = 5e-032
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3 / +1
Query: 597 DFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAH 731
+F G +P +FD+ +DA+ +N+N +P + NS ASV+VLA+
Sbjct: 1 NFCGEVPAAIFDKKIDALFINNNHFEFSLPDSFTNSTASVIVLAN 135
>gb|CN137684.1|CN137684 OX1_58_H05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_H05_A002 5', mRNA sequence
Length = 771
Score = 88.6 bits (187), Expect(3) = 9e-032
Identities = 33/72 (45%), Positives = 53/72 (73%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+ G FP+ +L LP+++Y+D+RFN+F G +P +FD+ +DA+ +N+NR +P +
Sbjct: 526 SNNQLSGPFPSQLLCLPNVQYVDIRFNNFCGEVPAAIFDKKIDALFINNNRFEFSLPDSF 705
Query: 696 GNSPASVLVLAH 731
NS ASV+VLA+
Sbjct: 706 TNSTASVIVLAN 741
Score = 57.4 bits (119), Expect(3) = 9e-032
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ AI DP T NW GP+VC Y G+YCAP P D
Sbjct: 247 KRAITDDPKKLTKNWCGPDVCNYFGVYCAPAPDD 348
Score = 30.9 bits (61), Expect(3) = 9e-032
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLA+ HLNSNR CG
Sbjct: 433 DLAVFHLNSNRSCG 474
>gb|CW109166.1|CW109166 104_481_11097938_116_34506_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097938, DNA
sequence
Length = 349
Score = 129 bits (277), Expect(2) = 3e-031
Identities = 55/97 (56%), Positives = 68/97 (70%)
Frame = +3 / +1
Query: 585 LRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSI 764
LRFNDF G + LF RPLDAI LN RLR +P N+G SPA+VLVL HN GGC+P S+
Sbjct: 58 LRFNDF*GAVSARLFHRPLDAIFLNHERLRFHLPDNIGKSPATVLVLTHNIFGGCLPASV 237
Query: 765 GRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
M+ TL+EI+LI+ L C PP++GL +LTV VS
Sbjct: 238 ANMSGTLHEILLINYGLASCFPPEIGLPRELTVLYVS 348
Score = 27.6 bits (54), Expect(2) = 3e-031
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3 / +3
Query: 534 GAFPAVVLALPSLRY 578
G FPAVVL +P+LR+
Sbjct: 6 GPFPAVVLHIPALRF 50
>gb|CW322149.1|CW322149 104_815_11475938_116_35946_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475938, DNA
sequence
Length = 617
Score = 64.8 bits (135), Expect(4) = 3e-031
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLR 674
SNN F G FP+ + +LPSL+YLDLRFN F+G +P +F R L L +N R
Sbjct: 330 SNNLFSGGFPSFLTSLPSLKYLDLRFNKFDGELPDAVFGRQLSLDALFANNNR 488
Score = 51.5 bits (106), Expect(4) = 3e-031
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3 / +3
Query: 690 NLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEI 794
+L NS ASV+VLA+ L GC+PPSIG MA TL E+
Sbjct: 513 SLTNSTASVIVLANTELAGCLPPSIGDMADTLVEL 617
Score = 46.4 bits (95), Expect(4) = 3e-031
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1 / +3
Query: 244 AIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
AI DP N T++W GP VC Y G++C D
Sbjct: 57 AIIEDPKNLTADWCGPFVCNYTGVFCTAALDD 152
Score = 29.9 bits (59), Expect(4) = 3e-031
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
D+AL+HLNSNRF G
Sbjct: 237 DVALIHLNSNRFHG 278
>gb|BG052326.1|BG052326 RHIZ2_12_C11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 481
Score = 133 bits (286), Expect = 3e-030
Identities = 55/114 (48%), Positives = 80/114 (70%)
Frame = +3 / +1
Query: 645 AILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGC 824
A+LLN N L GP+PA+LG S S L LA+N+L G IPPSI + +L E++L+++ L+GC
Sbjct: 127 ALLLNYNNLSGPLPADLGFSKLSYLALANNKLTGSIPPSIEHLQDSLLEVLLLNNQLSGC 306
Query: 825 VPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
+P ++G+LTK V D N L GP+P + ++ ++QLN+AGN L G VP A+C
Sbjct: 307 LPHELGMLTKAAVIDAGMNQLTGPIPSSFSCLSSVEQLNLAGNRLYGQVPDALC 468
>gb|CW312599.1|CW312599 104_802_11470846_116_35783_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470846, DNA
sequence
Length = 552
Score = 76.2 bits (160), Expect(2) = 8e-030
Identities = 31/52 (59%), Positives = 34/52 (65%)
Frame = +3 / -3
Query: 369 NHADIAGHIPADLPLGVPDLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNN 524
NHADIAG++PA LPLGVPDLAL H+NSNRFCGV SNN
Sbjct: 157 NHADIAGYLPASLPLGVPDLALFHINSNRFCGVVPHTFAHLHLLHELDLSNN 2
Score = 76.2 bits (160), Expect(2) = 8e-030
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +1 / -3
Query: 232 WKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRP 333
WKRTA+ SD SNFT+NW GPNVCAYNG+ CAP P
Sbjct: 301 WKRTAMLSDRSNFTANWVGPNVCAYNGVLCAPLP 200
Score = 71.2 bits (149), Expect(2) = 2e-022
Identities = 28/37 (75%), Positives = 30/37 (81%)
Frame = -3 / +3
Query: 478 VSGSTPQKRLELRWSSARSGTPRGRSAGMWPAMSAWL 368
V G+TPQKRLEL W SARSGTP G AG +PAMSAWL
Sbjct: 48 VCGTTPQKRLELMWKSARSGTPSGSDAGRYPAMSAWL 158
Score = 56.5 bits (117), Expect(2) = 2e-022
Identities = 24/34 (70%), Positives = 25/34 (73%)
Frame = -2 / +3
Query: 332 GRGAQ*MPLYAHTLGPAQLEVKLDGSEKMAVRFH 231
G GA PLYA TLGP QL VKLD S+ MAVRFH
Sbjct: 201 GSGAHNTPLYAQTLGPTQLAVKLDRSDNMAVRFH 302
>gb|CD206111.1|CD206111 HS1_20_G11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_20_G11_A012 5', mRNA sequence
Length = 733
Score = 79.4 bits (167), Expect(3) = 1e-029
Identities = 31/60 (51%), Positives = 39/60 (65%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PLDAI LN +P NL
Sbjct: 551 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPLDAIFLNDXHFDFELPENL 730
Score = 56.5 bits (117), Expect(3) = 1e-029
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ +I DP N T+NW GP+VCAY G+YC P D
Sbjct: 272 KRSITEDPKNLTANWCGPDVCAYFGVYCTTAPDD 373
Score = 33.6 bits (67), Expect(3) = 1e-029
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 458 DLALLHLNSNRFAG 499
>gb|CN127716.1|CN127716 RHOH1_24_D09.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_D09_A002 5', mRNA sequence
Length = 746
Score = 77.1 bits (162), Expect(3) = 2e-029
Identities = 27/65 (41%), Positives = 45/65 (69%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+ G FP+ +L LP+++Y+D+RFN+F G +P +FD+ +DA+ +N+N +P +
Sbjct: 537 SNNQLSGPFPSQLLCLPNVQYVDIRFNNFCGEVPAAIFDKKIDALFINNNHFEFSLPDTI 716
Query: 696 GNSPA 710
GN A
Sbjct: 717 GNMRA 731
Score = 57.4 bits (119), Expect(3) = 2e-029
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ AI DP T NW GP+VC Y G+YCAP P D
Sbjct: 258 KRAITDDPKKLTKNWCGPDVCNYFGVYCAPAPDD 359
Score = 34.5 bits (69), Expect(3) = 2e-029
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
DLA+ HLNSNRFCG
Sbjct: 444 DLAVFHLNSNRFCG 485
>gb|CD432373.1|CD432373 ETH1_29_A12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_29_A12_A002 5', mRNA sequence
Length = 732
Score = 78.5 bits (165), Expect(3) = 2e-029
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIP 686
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PLDAI LN N +P
Sbjct: 560 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPLDAIFLNDNHFDFELP 730
Score = 56.5 bits (117), Expect(3) = 2e-029
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ +I DP N T+NW GP+VCAY G+YC P D
Sbjct: 281 KRSITEDPKNLTANWCGPDVCAYFGVYCTTAPDD 382
Score = 33.6 bits (67), Expect(3) = 2e-029
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 467 DLALLHLNSNRFAG 508
>gb|CX614721.1|CX614721 GABR1_15_H03.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_15_H03_A002 5', mRNA sequence
Length = 722
Score = 76.2 bits (160), Expect(3) = 1e-028
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSN 665
SNNR G FP +L LP+++Y+DLRFN G +P LFD PLDAI LN N
Sbjct: 556 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDEPLDAIFLNDN 705
Score = 56.5 bits (117), Expect(3) = 1e-028
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ +I DP N T+NW GP+VCAY G+YC P D
Sbjct: 277 KRSITEDPKNLTANWCGPDVCAYFGVYCTTAPDD 378
Score = 33.6 bits (67), Expect(3) = 1e-028
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 463 DLALLHLNSNRFAG 504
>gb|CW197778.1|CW197778 104_622_11181862_116_36828_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181862, DNA
sequence
Length = 653
Score = 57.4 bits (119), Expect(4) = 1e-028
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1 / -2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ AI DP T NW GP+VC Y G+YCAP P D
Sbjct: 625 KRAITDDPKKLTKNWCGPDVCNYFGVYCAPAPDD 524
Score = 55.6 bits (115), Expect(4) = 1e-028
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3 / -3
Query: 588 RFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAH 731
RFN+F G +P +FD+ +DA+ +N+N +P + NS ASV+VLA+
Sbjct: 153 RFNNFCGEVPAAIFDKKIDALFINNNHFEFSLPDSFTNSTASVIVLAN 10
Score = 35.9 bits (72), Expect(4) = 1e-028
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3 / -2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLR 590
SNN+ G FP+ +L LP+++Y+D+R
Sbjct: 346 SNNQLSGPFPSQLLCLPNVQYVDIR 272
Score = 34.5 bits (69), Expect(4) = 1e-028
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / -2
Query: 423 DLALLHLNSNRFCG 464
DLA+ HLNSNRFCG
Sbjct: 439 DLAVFHLNSNRFCG 398
>gb|CD225818.1|CD225818 CCC1_41_E05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_E05_A007 5', mRNA sequence
Length = 615
Score = 69.3 bits (145), Expect(4) = 2e-028
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1 / +2
Query: 232 WKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRP 333
WK+ AIFSDP FT++W GP VC+Y G+YCAP P
Sbjct: 251 WKQQAIFSDPRGFTADWVGPGVCSYTGVYCAPLP 352
Score = 46.9 bits (96), Expect(4) = 2e-028
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLD 584
SNNR VGAFPAVVL LPSL++LD
Sbjct: 545 SNNRLVGAFPAVVLDLPSLKFLD 613
Score = 36.8 bits (74), Expect(4) = 2e-028
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGV 467
DL+LLHLNSNRFCG+
Sbjct: 452 DLSLLHLNSNRFCGL 496
Score = 29.5 bits (58), Expect(4) = 2e-028
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPL 413
NHADIAG++P++L L
Sbjct: 401 NHADIAGYLPSELGL 445
>gb|CX615558.1|CX615558 GABR1_20_G10.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_G10_A002 5', mRNA sequence
Length = 706
Score = 73.5 bits (154), Expect(3) = 7e-028
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSN 665
SNNR G FP +L L +++Y+DLRFN G +P LFD+PLDAI LN N
Sbjct: 545 SNNRLTGGFPQHILCLSNIKYVDLRFNSLCGAVPAALFDKPLDAIFLNDN 694
Score = 56.5 bits (117), Expect(3) = 7e-028
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ +I DP N T+NW GP+VCAY G+YC P D
Sbjct: 266 KRSITEDPKNLTANWCGPDVCAYFGVYCTTAPDD 367
Score = 33.6 bits (67), Expect(3) = 7e-028
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 452 DLALLHLNSNRFAG 493
>gb|CW371598.1|CW371598 fsbb001f047c04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047c04, DNA
sequence
Length = 255
Score = 100 bits (212), Expect(3) = 1e-027
Identities = 41/56 (73%), Positives = 45/56 (80%)
Frame = +3 / +3
Query: 762 IGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVL 929
+G MA TL+EIVLIDD+L GCV PQVGLL TVFDVSGNHLQGPLPP GMA +
Sbjct: 36 LGGMADTLSEIVLIDDNLAGCVSPQVGLLRNATVFDVSGNHLQGPLPPTAAGMAAV 203
Score = 93.6 bits (198), Expect(2) = 5e-022
Identities = 39/53 (73%), Positives = 42/53 (79%)
Frame = -3 / -3
Query: 922 AIPPTAGGSGP*RWLPLTSNTVSFVSRPTCGGTQPVRSSSMRTISLSVAAILP 764
AIP GGSGP RW PLTSNTV+F+S PTCG TQP R SSM TISLSV+AI P
Sbjct: 196 AIPAAVGGSGPWRWFPLTSNTVAFLSNPTCGDTQPARLSSMSTISLSVSAIPP 38
Score = 40.0 bits (81), Expect(3) = 1e-027
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3 / +2
Query: 729 HNRLGGCIPPSIGR 770
HNRLGGCIPPSIGR
Sbjct: 2 HNRLGGCIPPSIGR 43
Score = 32.7 bits (65), Expect(2) = 5e-022
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / -1
Query: 769 LPIDGGMQPPRRLC 728
LPIDGG+ PP RLC
Sbjct: 42 LPIDGGIHPPSRLC 1
Score = 22.6 bits (43), Expect(3) = 1e-027
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3 / +2
Query: 948 GNLLRGPVPS 977
GNLLRGP P+
Sbjct: 224 GNLLRGPGPT 253
>gb|CW236177.1|CW236177 104_692_11215475_148_37500_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215475, DNA
sequence
Length = 371
Score = 116 bits (247), Expect(2) = 2e-027
Identities = 45/63 (71%), Positives = 46/63 (73%)
Frame = +1 / -2
Query: 172 AAAQPPTNPXXXXXXXXXXXWKRTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALA 351
+A PT P WKRTAIFSDPSNFTSNW G NVCAYNGIYCAPRPSDGALA
Sbjct: 190 SAQPAPTTPALQAAYTALQSWKRTAIFSDPSNFTSNWVGSNVCAYNGIYCAPRPSDGALA 11
Query: 352 VAG 360
VAG
Sbjct: 10 VAG 2
Score = 28.6 bits (56), Expect(2) = 2e-027
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2 / -3
Query: 17 PTKTTAPPPAHRRGCRP*SPLLPLPAQE 100
PTK PPP P*SPLL P E
Sbjct: 351 PTKNLTPPPRAPPVRTP*SPLLAPPLPE 268
>gb|CW229116.1|CW229116 104_670_11207131_148_37260_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207131, DNA
sequence
Length = 745
Score = 124 bits (266), Expect = 2e-027
Identities = 52/116 (44%), Positives = 76/116 (65%)
Frame = +3 / +1
Query: 639 LDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLT 818
+ AI +N+N+ G +P N+G SP + L LA+NR G IP SI R A TL E++ +++ L+
Sbjct: 16 VQAIFVNNNQFSGSLPDNIGQSPVNYLSLANNRFTGEIPKSIARNAGTLLEVLFLNNSLS 195
Query: 819 GCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
GC+P ++GLL K TV D N L G +P + + ++QLN+A NLL G VP A+C
Sbjct: 196 GCLPYELGLLEKATVIDAGTNRLTGTIPASFACLRKVEQLNLADNLLYGEVPDALC 363
>gb|CW172683.1|CW172683 104_584_11156422_148_36543_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156422, DNA
sequence
Length = 582
Score = 123 bits (263), Expect = 5e-027
Identities = 51/99 (51%), Positives = 69/99 (69%)
Frame = +3 / -3
Query: 690 NLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFD 869
+L NS ASV+VLA+ L GC+PPSIG MA TL E++L++ ++ C+PP++G L KL V D
Sbjct: 493 SLTNSTASVIVLANTELAGCLPPSIGDMADTLVELILLNTSISSCIPPEIGKLKKLRVLD 314
Query: 870 VSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
+S N L G LP +VG M L+ LNV N L G VP ++C
Sbjct: 313 LSRNELAGELPESVGDMESLEVLNVGYNQLSGVVPESIC 197
>gb|CD221105.1|CD221105 CCC1_73_D05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_D05_A007 5', mRNA sequence
Length = 699
Score = 68.0 bits (142), Expect(3) = 3e-026
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDA 647
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PLDA
Sbjct: 567 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPLDA 698
Score = 56.5 bits (117), Expect(3) = 3e-026
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ +I DP N T+NW GP+VCAY G+YC P D
Sbjct: 288 KRSITEDPKNLTANWCGPDVCAYFGVYCTTAPDD 389
Score = 33.6 bits (67), Expect(3) = 3e-026
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 474 DLALLHLNSNRFAG 515
>gb|CD222617.1|CD222617 CCC1_23_C12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_23_C12_A007 3', mRNA sequence
Length = 618
Score = 120 bits (257), Expect = 3e-026
Identities = 53/92 (57%), Positives = 67/92 (72%)
Frame = +3 / +2
Query: 711 SVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQ 890
SV+VLA+ RL GCIP SIGRMA TLNE+V+++ L C+P +VG L +LTV D+S N LQ
Sbjct: 2 SVMVLANLRLRGCIPESIGRMAGTLNELVVLNAGLRSCIPQEVGWLRELTVLDLSFNELQ 181
Query: 891 GPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
G LP ++ GM LQQL+VA N L G +P VC
Sbjct: 182 GMLPESMAGMHELQQLDVAHNELWGHIPEGVC 277
>gb|CD206011.1|CD206011 HS1_20_G11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_20_G11_A012 3', mRNA sequence
Length = 648
Score = 120 bits (256), Expect = 5e-026
Identities = 53/92 (57%), Positives = 67/92 (72%)
Frame = +3 / +1
Query: 711 SVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQ 890
SV+VLA+ RL GCIP SIGRMA TLNE+V+++ L C+P +VG L +LTV D+S N LQ
Sbjct: 1 SVVVLANLRLRGCIPESIGRMAGTLNELVVLNAGLRSCIPQEVGWLRELTVLDLSFNELQ 180
Query: 891 GPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
G LP ++ GM LQQL+VA N L G +P VC
Sbjct: 181 GMLPESMAGMHELQQLDVAHNELWGHIPEGVC 276
>gb|CD229327.1|CD229327 CCC1_14_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_14_A06_A007 5', mRNA sequence
Length = 678
Score = 63.4 bits (132), Expect(3) = 9e-025
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPL 641
SNNR G FP +L LP+++Y+DLRFN G +P LFD+PL
Sbjct: 553 SNNRLTGGFPQHILCLPNIKYVDLRFNSLCGAVPAALFDKPL 678
Score = 56.1 bits (116), Expect(3) = 9e-025
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ ++ DP N T+NW GP+VCAY G+YC P D
Sbjct: 274 KRSVTEDPKNLTANWCGPDVCAYFGVYCTTAPDD 375
Score = 33.6 bits (67), Expect(3) = 9e-025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLALLHLNSNRF G
Sbjct: 460 DLALLHLNSNRFAG 501
>gb|CD229533.1|CD229533 CCC1_16_D02.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_16_D02_A007 5', mRNA sequence
Length = 668
Score = 60.6 bits (126), Expect(3) = 1e-024
Identities = 21/45 (46%), Positives = 34/45 (75%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAI 650
SNN+ G FP+ +L LP+++Y+D+RFN+F G +P +FD+ DA+
Sbjct: 532 SNNQLSGPFPSQLLCLPNVQYVDIRFNNFCGEVPAAIFDKKTDAL 666
Score = 57.4 bits (119), Expect(3) = 1e-024
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ AI DP T NW GP+VC Y G+YCAP P D
Sbjct: 253 KRAITDDPKKLTKNWCGPDVCNYFGVYCAPAPDD 354
Score = 34.5 bits (69), Expect(3) = 1e-024
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLA+ HLNSNRFCG
Sbjct: 439 DLAVFHLNSNRFCG 480
>gb|CD227866.1|CD227866 CCC1_56_E07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_E07_A007 3', mRNA sequence
Length = 642
Score = 115 bits (245), Expect = 2e-024
Identities = 52/92 (56%), Positives = 66/92 (71%)
Frame = +3 / +2
Query: 711 SVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQ 890
SV+VLA+ RL GCIP SIGRMA TLNE+V+++ L +P +VG L +LTV D+S N LQ
Sbjct: 2 SVVVLANLRLRGCIPESIGRMAGTLNELVVLNAGLRSYIPQEVGWLRELTVLDLSFNELQ 181
Query: 891 GPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
G LP ++ GM LQQL+VA N L G +P VC
Sbjct: 182 GMLPESMAGMHELQQLDVAHNELWGHIPEGVC 277
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 690,773,742
Number of Sequences: 832831
Number of extensions: 8696382
Number of successful extensions: 117187
Number of sequences better than 1.0e-020: 67
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 36220121257
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)