TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724812.2.1
(804 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN141229.1|CN141229 OX1_50_D06.b1_A002 Oxidatively-stres... 254 2e-069
gb|CN130398.1|CN130398 RHOH1_41_F02.b1_A002 Acid- and alkal... 254 2e-069
gb|CW283440.1|CW283440 104_759_11409248_148_35476_018 Sorgh... 246 3e-064
gb|BE364586.2|BE364586 PI1_15_G08.g1_A002 Pathogen induced ... 181 1e-061
gb|AW923519.1|AW923519 DG1_52_C12.g1_A002 Dark Grown 1 (DG1... 170 4e-058
gb|BG241163.1|BG241163 OV1_39_A04.b1_A002 Ovary 1 (OV1) Sor... 188 2e-049
gb|CW107875.1|CW107875 104_478_11096833_116_34485_009 Sorgh... 171 1e-044
gb|BE358736.1|BE358736 DG1_31_B04.g1_A002 Dark Grown 1 (DG1... 111 1e-040
gb|CW408694.1|CW408694 fsbb001f102l04f0 Sorghum methylation... 140 2e-034
gb|CW273802.1|CW273802 104_746_11404095_116_35362_056 Sorgh... 141 1e-032
gb|CF074059.1|CF074059 FE1_21_D10.b1_A002 Iron-deficient se... 77 3e-030
gb|CW449893.1|CW449893 fsbb001f188e03k0 Sorghum methylation... 131 2e-029
gb|CW312636.1|CW312636 104_802_11470866_116_35781_069 Sorgh... 105 7e-029
gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation... 116 1e-026
gb|CB928358.1|CB928358 ABA1_15_H11.b1_A012 Abscisic acid-tr... 116 1e-026
gb|CD227847.1|CD227847 CCC1_56_A04.b1_A007 Callus culture/c... 116 1e-026
gb|CN144834.1|CN144834 WOUND1_25_E11.b2_A002 Wounded leaves... 116 1e-026
gb|CW472599.1|CW472599 fsbb001f227j19k0 Sorghum methylation... 116 1e-026
gb|CW208733.1|CW208733 104_638_11188843_148_36982_074 Sorgh... 112 3e-026
gb|CW239897.1|CW239897 104_698_11217909_148_37505_089 Sorgh... 112 3e-026
gb|CW496055.1|CW496055 fsbb001f288b11k0 Sorghum methylation... 112 3e-026
gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 109 5e-026
gb|CW115454.1|CW115454 104_490_11106569_116_34592_069 Sorgh... 109 5e-026
gb|CW107876.1|CW107876 104_478_11096833_148_34481_009 Sorgh... 119 6e-026
gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum m... 111 1e-025
gb|BE358427.1|BE358427 DG1_29_F10.g1_A002 Dark Grown 1 (DG1... 111 1e-024
gb|CW392765.1|CW392765 fsbb001f079i12k0 Sorghum methylation... 111 3e-024
gb|CL187366.1|CL187366 104_402_10900827_116_32436_002 Sorgh... 106 3e-024
gb|CD220596.1|CD220596 CCC1_68_D02.b1_A007 Callus culture/c... 75 3e-024
gb|CW313572.1|CW313572 104_803_11471355_116_35786_002 Sorgh... 112 5e-024
gb|CB926451.1|CB926451 ABA1_9_A08.b1_A012 Abscisic acid-tre... 111 1e-023
gb|CW404738.1|CW404738 fsbb001f097a06f0 Sorghum methylation... 105 1e-023
gb|BE355481.1|BE355481 DG1_114_G09.g1_A002 Dark Grown 1 (DG... 111 2e-023
gb|CW785134.1|CW785134 SP__Ba0008J08.f SP__Ba Sorghum propi... 100 2e-023
gb|CW087763.1|CW087763 104_432_10947820_114_32553_008 Sorgh... 104 2e-023
gb|CW087764.1|CW087764 104_432_10947820_116_32557_008 Sorgh... 104 2e-023
gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorgh... 105 2e-023
gb|CW391999.1|CW391999 fsbb001f078g16k0 Sorghum methylation... 100 2e-023
gb|BE597326.1|BE597326 PI1_72_B01.g1_A002 Pathogen induced ... 100 2e-023
gb|CL164885.1|CL164885 104_359_10808216_116_31817_200 Sorgh... 100 2e-023
gb|BZ691445.1|BZ691445 SP__Ba0008J08.f SP__Ba Sorghum propi... 100 2e-023
gb|CW239896.1|CW239896 104_698_11217909_116_37504_089 Sorgh... 110 3e-023
gb|CD224613.1|CD224613 CCC1_35_F08.b1_A007 Callus culture/c... 110 3e-023
gb|CL189680.1|CL189680 104_407_10905541_116_32481_061 Sorgh... 87 4e-023
gb|CW500380.1|CW500380 fsbb001f295k23k0 Sorghum methylation... 87 4e-023
gb|CW785094.1|CW785094 SP__Ba0007P10.f SP__Ba Sorghum propi... 109 5e-023
gb|CW381313.1|CW381313 fsbb001f062k12k0 Sorghum methylation... 99 5e-023
gb|CW351772.1|CW351772 fsbb001f013k19k0 Sorghum methylation... 99 5e-023
gb|CW494886.1|CW494886 fsbb001f286g11f0 Sorghum methylation... 102 9e-023
gb|CW397587.1|CW397587 fsbb001f086k03f0 Sorghum methylation... 102 9e-023
gb|CX614929.1|CX614929 GABR1_17_D12.b1_A002 GA- or brassino... 102 9e-023
gb|CW313573.1|CW313573 104_803_11471355_148_35790_002 Sorgh... 100 1e-022
gb|CN148075.1|CN148075 WOUND1_54_C02.b1_A002 Wounded leaves... 102 2e-022
gb|CW056909.1|CW056909 104_298_10517934_114_30156 Sorghum m... 104 3e-022
gb|CW412590.1|CW412590 fsbb001f108e18k0 Sorghum methylation... 106 3e-022
gb|CD212039.1|CD212039 HS1_68_G01.b1_A012 Heat-shocked seed... 106 3e-022
gb|CD223127.1|CD223127 CCC1_26_D11.b1_A007 Callus culture/c... 106 3e-022
gb|CW232538.1|CW232538 104_685_11212872_148_37363_092 Sorgh... 106 3e-022
gb|CW351075.1|CW351075 fsbb001f012k24f0 Sorghum methylation... 100 4e-022
gb|CW351160.1|CW351160 fsbb001f012m22f0 Sorghum methylation... 100 4e-022
gb|CW253228.1|CW253228 104_716_11224968_148_35099_084 Sorgh... 100 5e-022
gb|CW378268.1|CW378268 fsbb001f056p09k0 Sorghum methylation... 100 6e-022
gb|CN130208.1|CN130208 RHOH1_40_A11.b1_A002 Acid- and alkal... 100 8e-022
gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorgh... 99 1e-021
gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1... 99 1e-021
gb|CW193215.1|CW193215 104_616_11179448_148_36779_032 Sorgh... 99 2e-021
gb|BE362888.2|BE362888 DG1_90_B11.g1_A002 Dark Grown 1 (DG1... 99 2e-021
gb|BE126076.1|BE126076 DG1_65_E03.g1_A002 Dark Grown 1 (DG1... 99 2e-021
gb|CX616980.1|CX616980 GABR1_31_B05.b1_A002 GA- or brassino... 99 2e-021
gb|BZ340250.1|BZ340250 ic37f08.b1 WGS-SbicolorF (JM107 adap... 97 2e-021
gb|CW429209.1|CW429209 fsbb001f142f12k0 Sorghum methylation... 99 2e-021
gb|CD204458.1|CD204458 HS1_8_D09.b1_A012 Heat-shocked seedl... 99 2e-021
gb|CW486745.1|CW486745 fsbb001f252d07f0 Sorghum methylation... 98 2e-021
gb|CW494887.1|CW494887 fsbb001f286g11k0 Sorghum methylation... 98 3e-021
gb|BE355032.1|BE355032 DG1_10_A04.g1_A002 Dark Grown 1 (DG1... 87 3e-021
gb|CW053375.1|CW053375 104_293_10515929_115_30191 Sorghum m... 103 3e-021
gb|CW467955.1|CW467955 fsbb001f219n18f0 Sorghum methylation... 96 4e-021
gb|CW180651.1|CW180651 104_595_11163067_116_36641_076 Sorgh... 103 4e-021
gb|CW307346.1|CW307346 104_795_11468092_116_35729_010 Sorgh... 83 5e-021
gb|CW090792.1|CW090792 104_436_10949475_116_32608_002 Sorgh... 85 5e-021
gb|CW224947.1|CW224947 104_662_11204091_148_37204_010 Sorgh... 85 5e-021
gb|CW307347.1|CW307347 104_795_11468092_148_35737_010 Sorgh... 83 5e-021
gb|CN138029.1|CN138029 OX1_61_F11.b1_A002 Oxidatively-stres... 97 5e-021
gb|CW064664.1|CW064664 104_311_10522696_115_30121 Sorghum m... 90 5e-021
gb|CW501587.1|CW501587 fsbb001f297h15k0 Sorghum methylation... 95 5e-021
gb|BG323036.1|BG323036 EM1_14_B07.g1_A002 Embryo 1 (EM1) So... 86 6e-021
gb|BE359082.1|BE359082 DG1_38_F04.g1_A002 Dark Grown 1 (DG1... 99 8e-021
gb|CW370930.1|CW370930 fsbb001f046c06k0 Sorghum methylation... 102 8e-021
gb|CD424348.1|CD424348 SA1_5_E09.b1_A002 Salicylic acid-tre... 102 8e-021
>gb|CN141229.1|CN141229 OX1_50_D06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_D06_A002 3', mRNA sequence
Length = 758
Score = 254 bits (549), Expect(2) = 2e-069
Identities = 104/154 (67%), Positives = 110/154 (71%)
Frame = +3 / +3
Query: 27 PDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVA 206
PDTRPLLP+GFLD+VAGRG VVPWSPQDRVLAH STACFLTHCGWNSTLET+AAGVPV+A
Sbjct: 183 PDTRPLLPEGFLDAVAGRGMVVPWSPQDRVLAHASTACFLTHCGWNSTLETVAAGVPVLA 362
Query: 207 FPQWGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXX 386
FPQWGDQCTDAKFLVDEL MGV LR PL GPEAD
Sbjct: 363 FPQWGDQCTDAKFLVDELRMGVHLRAPLRREGVREAVDAATTGPEADAMLANAKSWSAAA 542
Query: 387 XXXXXPGGSSDAHVQAFVDEVSRRACGVQVAKVV 488
PGGSSD HVQAF+DEVSR+A G Q V
Sbjct: 543 RAAVTPGGSSDRHVQAFIDEVSRQARGRQAEAAV 644
Score = 156 bits (336), Expect(3) = 3e-046
Identities = 68/109 (62%), Positives = 77/109 (70%)
Frame = -2 / -1
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDG 177
EH V L P C +H L H +PPQR AE D HP+LV QELGVRALVAPL E HG+ D
Sbjct: 512 EHGVSLWPCRCCIHSLAHTLPPQRGAEVDAHPKLVDQELGVRALVAPLWESQHGNTGGDR 333
Query: 176 LQGGVPPAVREEAGGGRVRQHAVLGAPRHHRAAPGHGVQEPVRQQRPGV 30
L+ GVPPAVR+EA G VRQHAVL APRH AA G GV+EP+ +QR V
Sbjct: 332 LERGVPPAVRQEARRGGVRQHAVLRAPRHDHAATGDGVKEPLGEQRASV 186
Score = 143 bits (307), Expect = 3e-033
Identities = 65/105 (61%), Positives = 66/105 (62%)
Frame = +1 / +1
Query: 43 CCRTGSWTPWPGAARWCLGAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPSRSGA 222
C GS TP P AA C GA RTACWRT P AS RTAGGTP R S P W S SGA
Sbjct: 199 CSPRGSLTPSPVAAWSCRGARRTACWRTPPRRAS*RTAGGTPRSRRSPPVFPCWLSHSGA 378
Query: 223 TSARTPSSWWTSSGWVSASAGRCGGTPCGRRWTPQWRGPRPTRCS 357
TSARTPSSW TS GW S SA RCGG C R W Q +G R T CS
Sbjct: 379 TSARTPSSWSTSLGWASTSAPRCGGRVCARLWMQQRQGQRLTPCS 513
Score = 127 bits (272), Expect = 2e-028
Identities = 50/59 (84%), Positives = 52/59 (88%)
Frame = -3 / -2
Query: 244 NLASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPRPAT 68
NLASVHWSPHCGKA+TGTPAA VS VEFHPQCVRK AV+ CASTRS GL GTT PRPAT
Sbjct: 400 NLASVHWSPHCGKASTGTPAATVSSVEFHPQCVRKHAVEACASTRSCGLHGTTMPRPAT 224
Score = 42.8 bits (87), Expect(3) = 3e-046
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -3 / -2
Query: 478 ATCTPQARRDTSSTNAWTCASEDPPG 401
+ C P+A R+TSS NA TC S+DPPG
Sbjct: 634 SACRPRA*RETSSMNA*TCRSDDPPG 557
Score = 29.9 bits (59), Expect(2) = 2e-069
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 156 GRPFLWVVRP 185
Score = 25.8 bits (50), Expect(3) = 3e-046
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -2
Query: 29 GRTTHRKGR 3
GRTTHRKGR
Sbjct: 184 GRTTHRKGR 158
>gb|CN130398.1|CN130398 RHOH1_41_F02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_F02_A002 3', mRNA sequence
Length = 712
Score = 254 bits (549), Expect(2) = 2e-069
Identities = 104/154 (67%), Positives = 110/154 (71%)
Frame = +3 / +3
Query: 27 PDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVA 206
PDTRPLLP+GFLD+VAGRG VVPWSPQDRVLAH STACFLTHCGWNSTLET+AAGVPV+A
Sbjct: 123 PDTRPLLPEGFLDAVAGRGMVVPWSPQDRVLAHASTACFLTHCGWNSTLETVAAGVPVLA 302
Query: 207 FPQWGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXX 386
FPQWGDQCTDAKFLVDEL MGV LR PL GPEAD
Sbjct: 303 FPQWGDQCTDAKFLVDELRMGVHLRAPLRREGVREAVDAATTGPEADAMLANAKSWSAAA 482
Query: 387 XXXXXPGGSSDAHVQAFVDEVSRRACGVQVAKVV 488
PGGSSD HVQAF+DEVSR+A G Q V
Sbjct: 483 RAAVTPGGSSDRHVQAFIDEVSRQARGRQAEAAV 584
Score = 151 bits (324), Expect(3) = 1e-044
Identities = 67/109 (61%), Positives = 76/109 (69%)
Frame = -2 / -3
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDG 177
EH V L P +H L H +PPQR AE D HP+LV QELGVRALVAPL E HG+ D
Sbjct: 452 EHGVSLWPCRRCIHSLAHTLPPQRGAEVDAHPKLVDQELGVRALVAPLWESQHGNTGGDR 273
Query: 176 LQGGVPPAVREEAGGGRVRQHAVLGAPRHHRAAPGHGVQEPVRQQRPGV 30
L+ GVPPAVR+EA G VRQHAVL APRH AA G GV+EP+ +QR V
Sbjct: 272 LERGVPPAVRQEARRGGVRQHAVLRAPRHDHAATGDGVKEPLGEQRASV 126
Score = 141 bits (303), Expect = 1e-032
Identities = 64/105 (60%), Positives = 66/105 (62%)
Frame = +1 / +1
Query: 43 CCRTGSWTPWPGAARWCLGAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPSRSGA 222
C GS TP P AA C GA RTACWRT P AS RTAGGTP R S P W S SGA
Sbjct: 139 CSPRGSLTPSPVAAWSCRGARRTACWRTPPRRAS*RTAGGTPRSRRSPPVFPCWLSHSGA 318
Query: 223 TSARTPSSWWTSSGWVSASAGRCGGTPCGRRWTPQWRGPRPTRCS 357
TSARTPSSW TS GW S SA RCGG C R W + +G R T CS
Sbjct: 319 TSARTPSSWSTSLGWASTSAPRCGGRVCARLWMQRRQGQRLTPCS 453
Score = 127 bits (272), Expect = 2e-028
Identities = 50/59 (84%), Positives = 52/59 (88%)
Frame = -3 / -1
Query: 244 NLASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPRPAT 68
NLASVHWSPHCGKA+TGTPAA VS VEFHPQCVRK AV+ CASTRS GL GTT PRPAT
Sbjct: 340 NLASVHWSPHCGKASTGTPAATVSSVEFHPQCVRKHAVEACASTRSCGLHGTTMPRPAT 164
Score = 42.8 bits (87), Expect(3) = 1e-044
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -3 / -1
Query: 478 ATCTPQARRDTSSTNAWTCASEDPPG 401
+ C P+A R+TSS NA TC S+DPPG
Sbjct: 574 SACRPRA*RETSSMNA*TCRSDDPPG 497
Score = 29.9 bits (59), Expect(2) = 2e-069
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 96 GRPFLWVVRP 125
Score = 25.8 bits (50), Expect(3) = 1e-044
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -1
Query: 29 GRTTHRKGR 3
GRTTHRKGR
Sbjct: 124 GRTTHRKGR 98
>gb|CW283440.1|CW283440 104_759_11409248_148_35476_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409248, DNA
sequence
Length = 436
Score = 246 bits (532), Expect = 3e-064
Identities = 99/144 (68%), Positives = 105/144 (72%)
Frame = +3 / -3
Query: 27 PDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVA 206
PDTRPLLP+GFLD+VAGRG VVPWSPQDRVLAH ST CFLTHCGWNSTLET+AAGVPV+A
Sbjct: 434 PDTRPLLPEGFLDAVAGRGMVVPWSPQDRVLAHASTECFLTHCGWNSTLETVAAGVPVLA 255
Query: 207 FPQWGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXX 386
FPQWGDQCTDAKFLVDEL MGV LR PL GPEAD
Sbjct: 254 FPQWGDQCTDAKFLVDELRMGVHLRAPLRREGVREAVDAATTGPEADAMLANGKSWSAAA 75
Query: 387 XXXXXPGGSSDAHVQAFVDEVSRR 458
PGGSSD HVQAF+DEVSR+
Sbjct: 74 RAAVTPGGSSDRHVQAFIDEVSRQ 3
Score = 155 bits (334), Expect(2) = 2e-041
Identities = 68/109 (62%), Positives = 77/109 (70%)
Frame = -2 / +3
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDG 177
EH V L P C +H L H +PPQR AE D HP+LV QELGVRALVAPL E HG+ D
Sbjct: 105 EHGVSLWPCRCCIHSLAHTLPPQRGAEVDAHPKLVDQELGVRALVAPLWESQHGNTGGDR 284
Query: 176 LQGGVPPAVREEAGGGRVRQHAVLGAPRHHRAAPGHGVQEPVRQQRPGV 30
L+ GVPPAVR+EA G VRQHAVL APRH AA G GV+EP+ +QR V
Sbjct: 285 LERGVPPAVRQEALRGGVRQHAVLRAPRHDHAATGDGVKEPLGEQRASV 431
Score = 144 bits (308), Expect = 2e-033
Identities = 65/105 (61%), Positives = 66/105 (62%)
Frame = +1 / -1
Query: 43 CCRTGSWTPWPGAARWCLGAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPSRSGA 222
C GS TP P AA C GA RTACWRT P AS RTAGGTP R S P W S SGA
Sbjct: 418 CSPRGSLTPSPVAAWSCRGARRTACWRTPPRSAS*RTAGGTPRSRRSPPVFPCWLSHSGA 239
Query: 223 TSARTPSSWWTSSGWVSASAGRCGGTPCGRRWTPQWRGPRPTRCS 357
TSARTPSSW TS GW S SA RCGG C R W Q +G R T CS
Sbjct: 238 TSARTPSSWSTSLGWASTSAPRCGGRVCARLWMQQRQGQRLTPCS 104
Score = 126 bits (269), Expect = 5e-028
Identities = 49/59 (83%), Positives = 52/59 (88%)
Frame = -3 / +1
Query: 244 NLASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPRPAT 68
NLASVHWSPHCGKA+TGTPAA VS VEFHPQCVRK +V+ CASTRS GL GTT PRPAT
Sbjct: 217 NLASVHWSPHCGKASTGTPAATVSSVEFHPQCVRKHSVEACASTRSCGLHGTTMPRPAT 393
Score = 35.0 bits (70), Expect(2) = 2e-041
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -3 / +1
Query: 454 RDTSSTNAWTCASEDPPG 401
R+TSS NA TC S+DPPG
Sbjct: 7 RETSSMNA*TCRSDDPPG 60
>gb|BE364586.2|BE364586 PI1_15_G08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 584
Score = 181 bits (390), Expect(2) = 1e-061
Identities = 71/75 (94%), Positives = 73/75 (97%)
Frame = +3 / +2
Query: 60 LDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDA 239
LD+VAGRG VVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDA
Sbjct: 2 LDAVAGRGTVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDA 181
Query: 240 KFLVDELGMGVRLRG 284
KFLV+EL MGVRLRG
Sbjct: 182 KFLVEELRMGVRLRG 226
Score = 170 bits (366), Expect(2) = 2e-045
Identities = 64/76 (84%), Positives = 64/76 (84%)
Frame = +1 / +3
Query: 61 WTPWPGAARWCLGAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPSRSGATSARTP 240
WTPWPG ARWC GA RT CWRTRP PASSRTA GT WRPSRRACP W SRSGATSARTP
Sbjct: 3 WTPWPGGARWCRGARRTGCWRTRPRPASSRTAAGTRRWRPSRRACPSWRSRSGATSARTP 182
Query: 241 SSWWTSSGWVSASAGR 288
SSWW SSGW SASAGR
Sbjct: 183 SSWWRSSGWGSASAGR 230
Score = 159 bits (341), Expect(3) = 4e-058
Identities = 66/79 (83%), Positives = 68/79 (86%)
Frame = -2 / -2
Query: 296 PPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDGLQGGVPPAVREEAGGGRVRQ 117
P +RPAEAD HPEL+HQELGVRALVAPLRE H GHARRDGLQ VP AVREEAG GRVRQ
Sbjct: 238 PQRRPAEADPHPELLHQELGVRALVAPLRERHDGHARRDGLQRRVPAAVREEAGRGRVRQ 59
Query: 116 HAVLGAPRHHRAAPGHGVQ 60
H VL APRHHRA PGHGVQ
Sbjct: 58 HPVLRAPRHHRAPPGHGVQ 2
Score = 130 bits (278), Expect(3) = 5e-035
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = -3 / -3
Query: 244 NLASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPRPAT 68
NLASVHWSPHCG ATTGTPAAMVS VEF PQCVRKQAVDGCAST S GL GTT PRPAT
Sbjct: 186 NLASVHWSPHCGNATTGTPAAMVSSVEFQPQCVRKQAVDGCASTLSCGLHGTTVPRPAT 10
Score = 76.7 bits (161), Expect(2) = 1e-061
Identities = 34/70 (48%), Positives = 35/70 (50%)
Frame = +3 / +2
Query: 285 PLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAFVDEVSRRAC 464
PL G EAD PGGSSD HVQAFVDEV+RRAC
Sbjct: 230 PLRRDAVREAVEAAVAGAEADAMLASARRWSAAAREAVAPGGSSDKHVQAFVDEVARRAC 409
Query: 465 GVQVAKVVPP 494
GVQ AKVVPP
Sbjct: 410 GVQAAKVVPP 439
Score = 59.7 bits (124), Expect(3) = 4e-058
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = -3 / -3
Query: 478 ATCTPQARRDTSSTNAWTCASEDPPG 401
A CTP ARR TSSTNAWTC SEDPPG
Sbjct: 423 AACTPHARRATSSTNAWTCLSEDPPG 346
Score = 46.4 bits (95), Expect(3) = 4e-058
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQR 285
EH V LGP H HRLPHGVPPQR
Sbjct: 301 EHGVCLGPGHGRFHRLPHGVPPQR 230
Score = 35.4 bits (71), Expect(2) = 2e-045
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1 / +3
Query: 454 GELVACKWLRSCRRRQR 504
GE VACK LRSCRRR+R
Sbjct: 399 GERVACKRLRSCRRRRR 449
Score = 33.1 bits (66), Expect(3) = 5e-035
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -2 / -2
Query: 467 ATSSPGHLVHERLDVRV 417
AT SP HLVHERLDV V
Sbjct: 412 ATRSPCHLVHERLDVLV 362
Score = 26.7 bits (52), Expect(3) = 5e-035
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -1 / -1
Query: 492 AARP*PLARHKL 457
AARP*PLARH L
Sbjct: 437 AARP*PLARHTL 402
>gb|AW923519.1|AW923519 DG1_52_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 531
Score = 170 bits (365), Expect(2) = 4e-058
Identities = 66/69 (95%), Positives = 67/69 (97%)
Frame = +3 / +3
Query: 78 RGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDE 257
RG VVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLV+E
Sbjct: 3 RGTVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVEE 182
Query: 258 LGMGVRLRG 284
L MGVRLRG
Sbjct: 183 LRMGVRLRG 209
Score = 151 bits (325), Expect(2) = 8e-040
Identities = 59/71 (83%), Positives = 59/71 (83%)
Frame = +1 / +1
Query: 76 GAARWCLGAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPSRSGATSARTPSSWWT 255
G ARWC GA RT CWRTRP PASSRTA GT WRPSRRACP W SRSGATSARTPSSWW
Sbjct: 1 GGARWCRGARRTGCWRTRPRPASSRTAAGTRRWRPSRRACPSWRSRSGATSARTPSSWWR 180
Query: 256 SSGWVSASAGR 288
SSGW SASAGR
Sbjct: 181 SSGWGSASAGR 213
Score = 143 bits (306), Expect(3) = 2e-053
Identities = 60/72 (83%), Positives = 62/72 (86%)
Frame = -2 / -2
Query: 296 PPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDGLQGGVPPAVREEAGGGRVRQ 117
P +RPAEAD HPEL+HQELGVRALVAPLRE H GHARRDGLQ VP AVREEAG GRVRQ
Sbjct: 221 PQRRPAEADPHPELLHQELGVRALVAPLRERHDGHARRDGLQRRVPAAVREEAGRGRVRQ 42
Query: 116 HAVLGAPRHHRA 81
H VL APRHHRA
Sbjct: 41 HPVLRAPRHHRA 6
Score = 122 bits (262), Expect(3) = 6e-033
Identities = 49/56 (87%), Positives = 49/56 (87%)
Frame = -3 / -3
Query: 244 NLASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPR 77
NLASVHWSPHCG ATTGTPAAMVS VEF PQCVRKQAVDGCAST S GL GTT PR
Sbjct: 169 NLASVHWSPHCGNATTGTPAAMVSSVEFQPQCVRKQAVDGCASTLSCGLHGTTVPR 2
Score = 76.7 bits (161), Expect(2) = 4e-058
Identities = 34/70 (48%), Positives = 35/70 (50%)
Frame = +3 / +3
Query: 285 PLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAFVDEVSRRAC 464
PL G EAD PGGSSD HVQAFVDEV+RRAC
Sbjct: 213 PLRRDAVREAVEAAVAGAEADAMLASARRWSAAAREAVAPGGSSDKHVQAFVDEVARRAC 392
Query: 465 GVQVAKVVPP 494
GVQ AKVVPP
Sbjct: 393 GVQAAKVVPP 422
Score = 59.7 bits (124), Expect(3) = 2e-053
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = -3 / -3
Query: 478 ATCTPQARRDTSSTNAWTCASEDPPG 401
A CTP ARR TSSTNAWTC SEDPPG
Sbjct: 406 AACTPHARRATSSTNAWTCLSEDPPG 329
Score = 46.4 bits (95), Expect(3) = 2e-053
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQR 285
EH V LGP H HRLPHGVPPQR
Sbjct: 284 EHGVCLGPGHGRFHRLPHGVPPQR 213
Score = 35.4 bits (71), Expect(2) = 8e-040
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1 / +1
Query: 454 GELVACKWLRSCRRRQR 504
GE VACK LRSCRRR+R
Sbjct: 382 GERVACKRLRSCRRRRR 432
Score = 33.1 bits (66), Expect(3) = 6e-033
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -2 / -2
Query: 467 ATSSPGHLVHERLDVRV 417
AT SP HLVHERLDV V
Sbjct: 395 ATRSPCHLVHERLDVLV 345
Score = 26.7 bits (52), Expect(3) = 6e-033
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -1 / -1
Query: 492 AARP*PLARHKL 457
AARP*PLARH L
Sbjct: 420 AARP*PLARHTL 385
>gb|BG241163.1|BG241163 OV1_39_A04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 188 bits (404), Expect(2) = 2e-049
Identities = 73/80 (91%), Positives = 76/80 (95%)
Frame = +3 / +2
Query: 27 PDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVA 206
PDTR LP+GFLD+VAGRG VVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVA
Sbjct: 170 PDTREHLPEGFLDAVAGRGTVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVA 349
Query: 207 FPQWGDQCTDAKFLVDELGM 266
FPQWGDQCTDAKFLV+EL M
Sbjct: 350 FPQWGDQCTDAKFLVEELRM 409
Score = 167 bits (360), Expect = 1e-040
Identities = 63/78 (80%), Positives = 63/78 (80%)
Frame = +1 / +3
Query: 31 TPGRCCRTGSWTPWPGAARWCLGAPRTACWRTRPPPASSRTAGGTPPWRPSRRACPWWPS 210
TPG R GSWTPWPG ARWC GA RT CWRTRP PASSRTA GT WRPSRRACP W S
Sbjct: 174 TPGSTSRKGSWTPWPGGARWCRGARRTGCWRTRPRPASSRTAAGTRRWRPSRRACPSWRS 353
Query: 211 RSGATSARTPSSWWTSSG 264
RSGATSARTPSSWW SSG
Sbjct: 354 RSGATSARTPSSWWRSSG 407
Score = 156 bits (335), Expect(2) = 4e-038
Identities = 65/79 (82%), Positives = 67/79 (84%)
Frame = -2 / -1
Query: 266 HPELVHQELGVRALVAPLREGHHGHARRDGLQGGVPPAVREEAGGGRVRQHAVLGAPRHH 87
HPEL+HQELGVRALVAPLRE H GHARRDGLQ VP AVREEAG GRVRQH VL APRHH
Sbjct: 409 HPELLHQELGVRALVAPLRERHDGHARRDGLQRRVPAAVREEAGRGRVRQHPVLRAPRHH 230
Query: 86 RAAPGHGVQEPVRQQRPGV 30
RA PGHGVQEP R+ PGV
Sbjct: 229 RAPPGHGVQEPFREVLPGV 173
Score = 130 bits (278), Expect = 3e-029
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = -3 / -2
Query: 244 NLASVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPRPAT 68
NLASVHWSPHCG ATTGTPAAMVS VEF PQCVRKQAVDGCAST S GL GTT PRPAT
Sbjct: 387 NLASVHWSPHCGNATTGTPAAMVSSVEFQPQCVRKQAVDGCASTLSCGLHGTTVPRPAT 211
Score = 29.9 bits (59), Expect(2) = 2e-049
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 143 GRPFLWVVRP 172
Score = 23.5 bits (45), Expect(2) = 4e-038
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2 / -2
Query: 29 GRTTHRKGR 3
GRTTHR GR
Sbjct: 171 GRTTHRNGR 145
>gb|CW107875.1|CW107875 104_478_11096833_116_34485_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096833, DNA
sequence
Length = 573
Score = 171 bits (369), Expect(2) = 1e-044
Identities = 64/70 (91%), Positives = 68/70 (97%)
Frame = +3 / +1
Query: 27 PDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVA 206
PDTRPLLP+GFLD+VAGRG VVPWSPQDRVLAH STACFLTHCGWNSTLET+AAGVPV+A
Sbjct: 364 PDTRPLLPEGFLDAVAGRGMVVPWSPQDRVLAHASTACFLTHCGWNSTLETVAAGVPVLA 543
Query: 207 FPQWGDQCTD 236
FPQWGDQCTD
Sbjct: 544 FPQWGDQCTD 573
Score = 121 bits (258), Expect(2) = 2e-028
Identities = 47/56 (83%), Positives = 49/56 (87%)
Frame = -3 / -2
Query: 235 SVHWSPHCGKATTGTPAAMVSRVEFHPQCVRKQAVDGCASTRSWGLQGTTAPRPAT 68
SVHWSPHCGKA+TGTPAA VS VEFHPQCVRK AV+ CASTRS GL GTT PRPAT
Sbjct: 572 SVHWSPHCGKASTGTPAATVSSVEFHPQCVRKHAVEACASTRSCGLHGTTMPRPAT 405
Score = 29.9 bits (59), Expect(2) = 1e-044
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 337 GRPFLWVVRP 366
Score = 25.8 bits (50), Expect(2) = 2e-028
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -2
Query: 29 GRTTHRKGR 3
GRTTHRKGR
Sbjct: 365 GRTTHRKGR 339
>gb|BE358736.1|BE358736 DG1_31_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 111 bits (237), Expect(2) = 1e-040
Identities = 43/45 (95%), Positives = 44/45 (97%)
Frame = +3 / +2
Query: 150 HCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDELGMGVRLRG 284
HCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLV+EL MGVRLRG
Sbjct: 2 HCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVEELRMGVRLRG 136
Score = 99.1 bits (210), Expect(2) = 4e-024
Identities = 39/46 (84%), Positives = 39/46 (84%)
Frame = +1 / +3
Query: 151 TAGGTPPWRPSRRACPWWPSRSGATSARTPSSWWTSSGWVSASAGR 288
TA GT WRPSRRACP W SRSGATSARTPSSWW SSGW SASAGR
Sbjct: 3 TAAGTRRWRPSRRACPSWRSRSGATSARTPSSWWRSSGWGSASAGR 140
Score = 96.4 bits (204), Expect(3) = 2e-039
Identities = 40/49 (81%), Positives = 42/49 (85%)
Frame = -2 / -2
Query: 296 PPQRPAEADTHPELVHQELGVRALVAPLREGHHGHARRDGLQGGVPPAV 150
P +RPAEAD HPEL+HQELGVRALVAPLRE H GHARRDGLQ VP AV
Sbjct: 148 PQRRPAEADPHPELLHQELGVRALVAPLRERHDGHARRDGLQRRVPAAV 2
Score = 76.7 bits (161), Expect(2) = 1e-040
Identities = 34/70 (48%), Positives = 35/70 (50%)
Frame = +3 / +2
Query: 285 PLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAFVDEVSRRAC 464
PL G EAD PGGSSD HVQAFVDEV+RRAC
Sbjct: 140 PLRRDAVREAVEAAVAGAEADAMLASARRWSAAAREAVAPGGSSDKHVQAFVDEVARRAC 319
Query: 465 GVQVAKVVPP 494
GVQ AKVVPP
Sbjct: 320 GVQAAKVVPP 349
Score = 59.7 bits (124), Expect(3) = 2e-039
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = -3 / -3
Query: 478 ATCTPQARRDTSSTNAWTCASEDPPG 401
A CTP ARR TSSTNAWTC SEDPPG
Sbjct: 333 AACTPHARRATSSTNAWTCLSEDPPG 256
Score = 46.4 bits (95), Expect(3) = 2e-039
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQR 285
EH V LGP H HRLPHGVPPQR
Sbjct: 211 EHGVCLGPGHGRFHRLPHGVPPQR 140
Score = 35.4 bits (71), Expect(2) = 4e-024
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1 / +3
Query: 454 GELVACKWLRSCRRRQR 504
GE VACK LRSCRRR+R
Sbjct: 309 GERVACKRLRSCRRRRR 359
>gb|CW408694.1|CW408694 fsbb001f102l04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102l04, DNA
sequence
Length = 655
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 61/140 (43%), Positives = 75/140 (53%)
Frame = +3 / +3
Query: 36 RPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQ 215
R LLP+ L + RG VV W PQ RVL H + CF+THCGWNS E +AAGVP+VA+P
Sbjct: 81 RLLLPEDALAACGDRGRVVAWCPQGRVLGHGAVGCFVTHCGWNSVAEALAAGVPMVAYPW 260
Query: 216 WGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXX 395
W DQ T+AK LV+E +GVRL P GP A
Sbjct: 261 WSDQFTNAKLLVEEYRVGVRLPAPATPGALRACVDEVMGGPRAAAFRMRALAWKDEAADA 440
Query: 396 XXPGGSSDAHVQAFVDEVSR 455
GGSSD ++ AFV+E+ R
Sbjct: 441 VADGGSSDRNLLAFVEEIRR 500
Score = 26.7 bits (52), Expect(2) = 2e-034
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVR 27
GRPFLWVVR
Sbjct: 42 GRPFLWVVR 68
>gb|CW273802.1|CW273802 104_746_11404095_116_35362_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404095, DNA
sequence
Length = 724
Score = 141 bits (302), Expect = 1e-032
Identities = 61/140 (43%), Positives = 75/140 (53%)
Frame = +3 / -1
Query: 36 RPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQ 215
R LLP+ L + RG VV W PQ RVL H + CF+THCGWNS E +AAGVP+VA+P
Sbjct: 667 RLLLPENALAACGDRGRVVAWCPQGRVLGHGAVGCFVTHCGWNSVAEALAAGVPMVAYPW 488
Query: 216 WGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXX 395
W DQ T+AK LV+E +GVRL P GP A
Sbjct: 487 WSDQFTNAKLLVEEYRVGVRLPAPATPGALRACVDEVMGGPRAAAFRMRALAWKDEAADA 308
Query: 396 XXPGGSSDAHVQAFVDEVSR 455
GGSSD ++ AFV+E+ R
Sbjct: 307 VADGGSSDRNLLAFVEEIRR 248
>gb|CF074059.1|CF074059 FE1_21_D10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_D10_A002 3', mRNA sequence
Length = 594
Score = 76.7 bits (161), Expect(2) = 2e-026
Identities = 34/70 (48%), Positives = 35/70 (50%)
Frame = +3 / +2
Query: 285 PLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAFVDEVSRRAC 464
PL G EAD PGGSSD HVQAFVDEV+RRAC
Sbjct: 83 PLRRDAVREAVEAAVAGAEADAMLASARRWSAAAREAVAPGGSSDKHVQAFVDEVARRAC 262
Query: 465 GVQVAKVVPP 494
GVQ AKVVPP
Sbjct: 263 GVQAAKVVPP 292
Score = 65.2 bits (136), Expect(3) = 3e-030
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -2 / -3
Query: 296 PPQRPAEADTHPELVHQELGVRALVAPLRE 207
P +RPAEAD HPEL+HQELGVRALVAPLRE
Sbjct: 91 PQRRPAEADPHPELLHQELGVRALVAPLRE 2
Score = 63.8 bits (133), Expect(2) = 2e-026
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3 / +2
Query: 207 FPQWGDQCTDAKFLVDELGMGVRLRG 284
FPQWGDQCTDAKFLV+EL MGVRLRG
Sbjct: 2 FPQWGDQCTDAKFLVEELRMGVRLRG 79
Score = 59.7 bits (124), Expect(3) = 3e-030
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = -3 / -1
Query: 478 ATCTPQARRDTSSTNAWTCASEDPPG 401
A CTP ARR TSSTNAWTC SEDPPG
Sbjct: 276 AACTPHARRATSSTNAWTCLSEDPPG 199
Score = 46.4 bits (95), Expect(3) = 3e-030
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2 / -3
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQR 285
EH V LGP H HRLPHGVPPQR
Sbjct: 154 EHGVCLGPGHGRFHRLPHGVPPQR 83
>gb|CW449893.1|CW449893 fsbb001f188e03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f188e03, DNA
sequence
Length = 689
Score = 131 bits (280), Expect = 2e-029
Identities = 58/137 (42%), Positives = 71/137 (51%)
Frame = +3 / -2
Query: 39 PLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQW 218
P PD + A G VV W Q RVL+H + CFLTHCGWNS +E +A+GVPVV +P W
Sbjct: 679 PDQPDDDCLAAATGGKVVAWCDQARVLSHAAVGCFLTHCGWNSAVEALASGVPVVTYPAW 500
Query: 219 GDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXXXXXXXXXXXXX 398
DQ T+AKFL D G+GVRL P+ GP+A
Sbjct: 499 ADQPTNAKFLEDVYGVGVRLPKPIARDALRRCVEEVMSGPKAAAMRATAGKWKDEASAAL 320
Query: 399 XPGGSSDAHVQAFVDEV 449
GGSS+ +Q FVD V
Sbjct: 319 ATGGSSERGIQDFVDAV 269
>gb|CW312636.1|CW312636 104_802_11470866_116_35781_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470866, DNA
sequence
Length = 660
Score = 105 bits (224), Expect(4) = 7e-029
Identities = 38/78 (48%), Positives = 57/78 (73%)
Frame = +3 / -2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LP+GF ++VAGRG V W Q+ VL H +T FL+HCGWNSTLE++ AGVP++ +P + +
Sbjct: 428 LPEGFAEAVAGRGLTVGWCDQEAVLEHRATGGFLSHCGWNSTLESLRAGVPLLCWPFFSE 249
Query: 225 QCTDAKFLVDELGMGVRL 278
Q T+ ++ DE G+G+ +
Sbjct: 248 QVTNCRYACDEWGVGLEM 195
Score = 28.6 bits (56), Expect(4) = 7e-029
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / -2
Query: 402 PGGSSDAHVQAFVDEVSRRAC 464
PGGSS ++ F+ E++R C
Sbjct: 68 PGGSSRVNLDRFIQEIARAKC 6
Score = 26.3 bits (51), Expect(4) = 7e-029
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 1 GRPFLWVVRP 30
G PFLWVVRP
Sbjct: 488 GCPFLWVVRP 459
Score = 23.5 bits (45), Expect(4) = 7e-029
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1 / -3
Query: 301 PCGRRWTPQWRGPRP 345
P G WTP+ PRP
Sbjct: 160 PSGS*WTPREGAPRP 116
>gb|CW404739.1|CW404739 fsbb001f097a06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097a06, DNA
sequence
Length = 690
Score = 116 bits (247), Expect(2) = 1e-026
Identities = 44/79 (55%), Positives = 55/79 (69%)
Frame = +3 / -2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
+PD F D RG V WS Q VLAHP+ CF+THCGWNST E ++AGVP+VA PQW D
Sbjct: 512 IPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVPMVAMPQWSD 333
Query: 225 QCTDAKFLVDELGMGVRLR 281
Q +AK++ D +GVR+R
Sbjct: 332 QPVNAKYIEDVWRVGVRVR 276
Score = 25.4 bits (49), Expect(2) = 1e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / -2
Query: 1 GRPFLWVVR 27
G+PFLWVVR
Sbjct: 557 GKPFLWVVR 531
>gb|CB928358.1|CB928358 ABA1_15_H11.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_H11_A012 3', mRNA sequence
Length = 679
Score = 116 bits (247), Expect(2) = 1e-026
Identities = 44/79 (55%), Positives = 55/79 (69%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
+PD F D RG V WS Q VLAHP+ CF+THCGWNST E ++AGVP+VA PQW D
Sbjct: 93 IPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVPMVAMPQWSD 272
Query: 225 QCTDAKFLVDELGMGVRLR 281
Q +AK++ D +GVR+R
Sbjct: 273 QPVNAKYIEDVWRVGVRVR 329
Score = 25.4 bits (49), Expect(2) = 1e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVR 27
G+PFLWVVR
Sbjct: 48 GKPFLWVVR 74
>gb|CD227847.1|CD227847 CCC1_56_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_A04_A007 3', mRNA sequence
Length = 630
Score = 116 bits (247), Expect(2) = 1e-026
Identities = 44/79 (55%), Positives = 55/79 (69%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
+PD F D RG V WS Q VLAHP+ CF+THCGWNST E ++AGVP+VA PQW D
Sbjct: 46 IPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVPMVAMPQWSD 225
Query: 225 QCTDAKFLVDELGMGVRLR 281
Q +AK++ D +GVR+R
Sbjct: 226 QPVNAKYIEDVWRVGVRVR 282
Score = 25.4 bits (49), Expect(2) = 1e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 1 GRPFLWVVR 27
G+PFLWVVR
Sbjct: 1 GKPFLWVVR 27
>gb|CN144834.1|CN144834 WOUND1_25_E11.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_E11_A002 3', mRNA sequence
Length = 631
Score = 116 bits (247), Expect(2) = 1e-026
Identities = 44/79 (55%), Positives = 55/79 (69%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
+PD F D RG V WS Q VLAHP+ CF+THCGWNST E ++AGVP+VA PQW D
Sbjct: 97 IPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVPMVAMPQWSD 276
Query: 225 QCTDAKFLVDELGMGVRLR 281
Q +AK++ D +GVR+R
Sbjct: 277 QPVNAKYIEDVWRVGVRVR 333
Score = 25.4 bits (49), Expect(2) = 1e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 1 GRPFLWVVR 27
G+PFLWVVR
Sbjct: 52 GKPFLWVVR 78
>gb|CW472599.1|CW472599 fsbb001f227j19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227j19, DNA
sequence
Length = 436
Score = 116 bits (247), Expect(2) = 1e-026
Identities = 44/79 (55%), Positives = 55/79 (69%)
Frame = +3 / +3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
+PD F D RG V WS Q VLAHP+ CF+THCGWNST E ++AGVP+VA PQW D
Sbjct: 129 IPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVPMVAMPQWSD 308
Query: 225 QCTDAKFLVDELGMGVRLR 281
Q +AK++ D +GVR+R
Sbjct: 309 QPVNAKYIEDVWRVGVRVR 365
Score = 25.4 bits (49), Expect(2) = 1e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVR 27
G+PFLWVVR
Sbjct: 84 GKPFLWVVR 110
>gb|CW208733.1|CW208733 104_638_11188843_148_36982_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11188843, DNA
sequence
Length = 663
Score = 112 bits (240), Expect(2) = 3e-026
Identities = 41/70 (58%), Positives = 52/70 (74%)
Frame = +3 / -1
Query: 72 AGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLV 251
A RG +V W PQ VLAHP+ CF THCGWNST+E ++AGVP+VA P W DQ T+AK++
Sbjct: 267 ASRGLLVSWCPQLEVLAHPAVGCFFTHCGWNSTVEALSAGVPMVAMPDWSDQTTNAKYIQ 88
Query: 252 DELGMGVRLR 281
D +GVR+R
Sbjct: 87 DVWRVGVRVR 58
Score = 27.2 bits (53), Expect(2) = 3e-026
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / -1
Query: 1 GRPFLWVVRPT 33
G+PFLWVVR T
Sbjct: 345 GKPFLWVVRAT 313
>gb|CW239897.1|CW239897 104_698_11217909_148_37505_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11217909, DNA
sequence
Length = 565
Score = 112 bits (240), Expect(2) = 3e-026
Identities = 41/70 (58%), Positives = 52/70 (74%)
Frame = +3 / +2
Query: 72 AGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLV 251
A RG +V W PQ VLAHP+ CF THCGWNST+E ++AGVP+VA P W DQ T+AK++
Sbjct: 332 ASRGLLVSWCPQLEVLAHPAVGCFFTHCGWNSTVEALSAGVPMVAMPDWSDQTTNAKYIQ 511
Query: 252 DELGMGVRLR 281
D +GVR+R
Sbjct: 512 DVWRVGVRVR 541
Score = 27.2 bits (53), Expect(2) = 3e-026
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 1 GRPFLWVVRPT 33
G+PFLWVVR T
Sbjct: 254 GKPFLWVVRAT 286
>gb|CW496055.1|CW496055 fsbb001f288b11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288b11, DNA
sequence
Length = 555
Score = 112 bits (240), Expect(2) = 3e-026
Identities = 41/70 (58%), Positives = 52/70 (74%)
Frame = +3 / -2
Query: 72 AGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLV 251
A RG +V W PQ VLAHP+ CF THCGWNST+E ++AGVP+VA P W DQ T+AK++
Sbjct: 365 ASRGLLVSWCPQLEVLAHPAVGCFFTHCGWNSTVEALSAGVPMVAMPDWSDQTTNAKYIQ 186
Query: 252 DELGMGVRLR 281
D +GVR+R
Sbjct: 185 DVWRVGVRVR 156
Score = 27.2 bits (53), Expect(2) = 3e-026
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / -2
Query: 1 GRPFLWVVRPT 33
G+PFLWVVR T
Sbjct: 443 GKPFLWVVRAT 411
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
Length = 142376
Score = 109 bits (232), Expect(2) = 5e-026
Identities = 38/76 (50%), Positives = 56/76 (73%)
Frame = +3 / +3
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
DGF VAG+G +V W+PQ RVL+HPS ACF+THCGWNST+E + GVP++ +P + DQ
Sbjct: 127986 DGFRRRVAGKGLIVGWAPQQRVLSHPSVACFVTHCGWNSTMEAVRHGVPLLCWPYFADQF 128165
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ D G+G+++
Sbjct: 128166 FNQTYICDLWGVGLKV 128213
Score = 100 bits (213), Expect(2) = 2e-023
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +3 / +1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V +G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 130489 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 130668
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ D G G+R+
Sbjct: 130669 MNQNYICDAWGTGLRI 130716
Score = 99.1 bits (210), Expect(2) = 3e-022
Identities = 36/72 (50%), Positives = 50/72 (69%)
Frame = +3 / +2
Query: 72 AGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLV 251
A RG VV W PQ VLAHP+ ACFLTHCGWNST+E + +GVP++ +P + DQ + ++
Sbjct: 123371 APRGRVVSWCPQQSVLAHPAVACFLTHCGWNSTMEAVRSGVPLLCWPYFTDQFLNQSYIC 123550
Query: 252 DELGMGVRLRGP 287
D G G+++ P
Sbjct: 123551 DVWGTGLKVPLP 123586
Score = 98.2 bits (208), Expect(2) = 2e-021
Identities = 35/74 (47%), Positives = 50/74 (67%)
Frame = +3 / +1
Query: 57 FLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTD 236
F SV G+G +V W+PQ RVL+HPS ACF+THCGWNST+E + GVP + P + DQ +
Sbjct: 133198 FQQSVNGKGLIVTWAPQQRVLSHPSVACFMTHCGWNSTMEAVLHGVPFLCCPYFADQFCN 133377
Query: 237 AKFLVDELGMGVRL 278
++ + G++L
Sbjct: 133378 QSYVCNVWKTGLKL 133419
Score = 29.9 bits (59), Expect(2) = 2e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 130426 GRPFLWVVRP 130455
Score = 29.9 bits (59), Expect(2) = 5e-026
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 127923 GRPFLWVVRP 127952
Score = 27.2 bits (53), Expect(2) = 3e-022
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 4 RPFLWVVRP 30
RPFLWVVRP
Sbjct: 123299 RPFLWVVRP 123325
Score = 25.4 bits (49), Expect(2) = 2e-021
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / +1
Query: 1 GRPFLWVVRP 30
G PF+WVVRP
Sbjct: 133129 GWPFIWVVRP 133158
>gb|CW115454.1|CW115454 104_490_11106569_116_34592_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106569, DNA
sequence
Length = 603
Score = 109 bits (232), Expect(2) = 5e-026
Identities = 38/76 (50%), Positives = 56/76 (73%)
Frame = +3 / +2
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
DGF VAG+G +V W+PQ RVL+HPS ACF+THCGWNST+E + GVP++ +P + DQ
Sbjct: 113 DGFRRRVAGKGLIVGWAPQQRVLSHPSVACFVTHCGWNSTMEAVRHGVPLLCWPYFADQF 292
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ D G+G+++
Sbjct: 293 FNQTYICDLWGVGLKV 340
Score = 29.9 bits (59), Expect(2) = 5e-026
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 50 GRPFLWVVRP 79
>gb|CW107876.1|CW107876 104_478_11096833_148_34481_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096833, DNA
sequence
Length = 618
Score = 119 bits (254), Expect = 6e-026
Identities = 52/101 (51%), Positives = 56/101 (55%)
Frame = +3 / -1
Query: 186 AGVPVVAFPQWGDQCTDAKFLVDELGMGVRLRGPLXXXXXXXXXXXXXXGPEADXXXXXX 365
AGVPV+ QWGDQCTDAKFLVDEL MGV LR P+ GPEAD
Sbjct: 618 AGVPVLVSQQWGDQCTDAKFLVDELRMGVHLRAPMRREGVREAVDAATTGPEADAMLANA 439
Query: 366 XXXXXXXXXXXXPGGSSDAHVQAFVDEVSRRACGVQVAKVV 488
PGGSSD HVQAF+DEVSR+A G Q V
Sbjct: 438 KSWSAAARAAVTPGGSSDRHVQAFIDEVSRQARGRQAEAAV 316
Score = 80.3 bits (169), Expect(2) = 3e-021
Identities = 33/55 (60%), Positives = 37/55 (67%)
Frame = -2 / +1
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQRPAEADTHPELVHQELGVRALVAPLREGHHGH 192
EH V L P C +H L H +PP R AE D HP+LV QELGVRALVAPL HG+
Sbjct: 448 EHGVSLWPCRCCIHSLAHTLPPHRGAEVDAHPKLVDQELGVRALVAPLLGNQHGN 612
Score = 42.8 bits (87), Expect(2) = 3e-021
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -3 / +2
Query: 478 ATCTPQARRDTSSTNAWTCASEDPPG 401
+ C P+A R+TSS NA TC S+DPPG
Sbjct: 326 SACRPRA*RETSSMNA*TCRSDDPPG 403
>gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506614, DNA
sequence
Length = 710
Score = 111 bits (238), Expect(2) = 1e-025
Identities = 43/85 (50%), Positives = 57/85 (67%)
Frame = +3 / -2
Query: 24 PPDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVV 203
P P LPDGF + GRG VV W+PQ+ VL HP+ F THCGWNSTLE++ AGVP++
Sbjct: 562 PAPVLPALPDGFDAATRGRGVVVRWAPQEEVLEHPAVGAFWTHCGWNSTLESVCAGVPIM 383
Query: 204 AFPQWGDQCTDAKFLVDELGMGVRL 278
A P +GDQ +A+++ D G+ L
Sbjct: 382 ARPCFGDQMGNARYVEDVWRTGLTL 308
Score = 26.3 bits (51), Expect(2) = 1e-025
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 1 GRPFLWVVRP 30
G PFLWV+RP
Sbjct: 637 GHPFLWVLRP 608
>gb|BE358427.1|BE358427 DG1_29_F10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 111 bits (238), Expect(2) = 1e-024
Identities = 43/74 (58%), Positives = 55/74 (74%)
Frame = +3 / +1
Query: 60 LDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDA 239
+D+ +G G VV W Q RVL+HPS ACF+THCGWNSTLE++A GVP VA PQ+ DQ T A
Sbjct: 151 VDADSGGGMVVSWCDQARVLSHPSVACFVTHCGWNSTLESLACGVPTVAVPQYSDQGTAA 330
Query: 240 KFLVDELGMGVRLR 281
+ + +G GVR+R
Sbjct: 331 WLVAERMGAGVRVR 372
Score = 22.6 bits (43), Expect(2) = 1e-024
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / +1
Query: 4 RPFLWVVR 27
RPFLWV+R
Sbjct: 64 RPFLWVLR 87
>gb|CW392765.1|CW392765 fsbb001f079i12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079i12, DNA
sequence
Length = 534
Score = 111 bits (238), Expect(2) = 3e-024
Identities = 43/74 (58%), Positives = 55/74 (74%)
Frame = +3 / -3
Query: 60 LDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDA 239
+D+ +G G VV W Q RVL+HPS ACF+THCGWNSTLE++A GVP VA PQ+ DQ T A
Sbjct: 511 VDADSGGGMVVSWCDQARVLSHPSVACFVTHCGWNSTLESLACGVPTVAVPQYSDQGTAA 332
Query: 240 KFLVDELGMGVRLR 281
+ + +G GVR+R
Sbjct: 331 WLVAERMGAGVRVR 290
Score = 23.1 bits (44), Expect(2) = 3e-024
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3 / -3
Query: 405 GGSSDAHVQAFVDEVSRRACGVQVAKVVPPSSEELH 512
GGSS ++ F+ +++R VA + SSE +H
Sbjct: 142 GGSSHRNLTEFLRQIARGPGE*TVASLPCISSETIH 35
>gb|CL187366.1|CL187366 104_402_10900827_116_32436_002 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900827, DNA
sequence
Length = 722
Score = 106 bits (226), Expect(2) = 3e-024
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = +3 / -2
Query: 42 LLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWG 221
+LP+GF+ RG + W PQ+ VL+HPS FLTHCGWNSTLE+I AGVP++ +P +
Sbjct: 535 MLPEGFVTDTKERGILASWCPQELVLSHPSVGLFLTHCGWNSTLESICAGVPMLCWPFFA 356
Query: 222 DQCTDAKFLVDELGMGVRL 278
+Q T+ +++ D+ G+G+ +
Sbjct: 355 EQPTNCRYVCDKWGIGMEI 299
Score = 26.7 bits (52), Expect(2) = 3e-024
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 1 GRPFLWVVRP 30
G PFLWV+RP
Sbjct: 589 GSPFLWVIRP 560
>gb|CD220596.1|CD220596 CCC1_68_D02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_68_D02_A007 3', mRNA sequence
Length = 393
Score = 74.8 bits (157), Expect(2) = 3e-024
Identities = 32/54 (59%), Positives = 33/54 (61%)
Frame = +3 / +1
Query: 333 GPEADXXXXXXXXXXXXXXXXXXPGGSSDAHVQAFVDEVSRRACGVQVAKVVPP 494
G EAD PGGSSD HVQAFVDEV+RRACGVQ AKVVPP
Sbjct: 100 GAEADAMLASARRWSPAAREAVAPGGSSDKHVQAFVDEVARRACGVQAAKVVPP 261
Score = 59.7 bits (124), Expect(3) = 4e-024
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = -3 / -2
Query: 478 ATCTPQARRDTSSTNAWTCASEDPPG 401
A CTP ARR TSSTNAWTC SEDPPG
Sbjct: 245 AACTPHARRATSSTNAWTCLSEDPPG 168
Score = 58.3 bits (121), Expect(2) = 3e-024
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +1 / +2
Query: 241 SSWWTSSGWVSASAGRCGGTPCGRRWTPQWRGPRPTRCS 357
S W +S +++ RCGGTPCGRRW W GPR T CS
Sbjct: 8 SWWRSSGWGSASAGRRCGGTPCGRRWKRPWPGPRQTPCS 124
Score = 46.4 bits (95), Expect(3) = 4e-024
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2 / -1
Query: 356 EHRVGLGPRHCGVHRLPHGVPPQR 285
EH V LGP H HRLPHGVPPQR
Sbjct: 123 EHGVCLGPGHGRFHRLPHGVPPQR 52
Score = 44.1 bits (90), Expect(3) = 4e-024
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -2 / -1
Query: 296 PPQRPAEADTHPELVHQELG 237
P +RPAEAD HPEL+HQELG
Sbjct: 60 PQRRPAEADPHPELLHQELG 1
>gb|CW313572.1|CW313572 104_803_11471355_116_35786_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471355, DNA
sequence
Length = 692
Score = 112 bits (240), Expect = 5e-024
Identities = 41/70 (58%), Positives = 52/70 (74%)
Frame = +3 / -1
Query: 72 AGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLV 251
A RG +V W PQ VLAHP+ CF THCGWNST+E ++AGVP+VA P W DQ T+AK++
Sbjct: 623 ASRGLLVSWCPQLEVLAHPAVGCFFTHCGWNSTVEALSAGVPMVAMPDWSDQTTNAKYIQ 444
Query: 252 DELGMGVRLR 281
D +GVR+R
Sbjct: 443 DVWRVGVRVR 414
>gb|CB926451.1|CB926451 ABA1_9_A08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_9_A08_A012 3', mRNA sequence
Length = 568
Score = 111 bits (238), Expect = 1e-023
Identities = 43/77 (55%), Positives = 53/77 (68%)
Frame = +3 / +2
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F D RG V WS Q VLAHP+ CF+THCGWNST E ++AGVP+VA PQW DQ
Sbjct: 2 DKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVPMVAMPQWSDQP 181
Query: 231 TDAKFLVDELGMGVRLR 281
+AK++ D +GVR+R
Sbjct: 182 VNAKYIEDVWRVGVRVR 232
>gb|CW404738.1|CW404738 fsbb001f097a06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097a06, DNA
sequence
Length = 603
Score = 105 bits (225), Expect(2) = 1e-023
Identities = 39/67 (58%), Positives = 47/67 (70%)
Frame = +3 / +2
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
+PD F D RG V WS Q VLAHP+ CF+THCGWNST E ++AGVP+VA PQW D
Sbjct: 401 IPDKFADKANERGLVATWSAQLEVLAHPAVGCFVTHCGWNSTTEGLSAGVPMVAMPQWSD 580
Query: 225 QCTDAKF 245
Q +AK+
Sbjct: 581 QPVNAKY 601
Score = 25.4 bits (49), Expect(2) = 1e-023
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +2
Query: 1 GRPFLWVVR 27
G+PFLWVVR
Sbjct: 356 GKPFLWVVR 382
>gb|BE355481.1|BE355481 DG1_114_G09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 388
Score = 111 bits (236), Expect = 2e-023
Identities = 43/74 (58%), Positives = 54/74 (72%)
Frame = +3 / +3
Query: 60 LDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDA 239
+D +G G VV W Q RVL+HPS ACF+THCGWNSTLE++A GVP VA PQ+ DQ T A
Sbjct: 51 VDPNSGGGMVVSWCDQARVLSHPSVACFVTHCGWNSTLESLACGVPTVAVPQYSDQGTAA 230
Query: 240 KFLVDELGMGVRLR 281
+ + +G GVR+R
Sbjct: 231 WLVAERMGAGVRVR 272
>gb|CW785134.1|CW785134 SP__Ba0008J08.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0008J08 5', DNA sequence
Length = 783
Score = 100 bits (213), Expect(2) = 2e-023
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +3 / -1
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V +G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 381 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 202
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ D G G+R+
Sbjct: 201 MNQNYICDAWGTGLRI 154
Score = 29.9 bits (59), Expect(2) = 2e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -1
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 444 GRPFLWVVRP 415
>gb|CW087763.1|CW087763 104_432_10947820_114_32553_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947820, DNA
sequence
Length = 735
Score = 104 bits (221), Expect(2) = 2e-023
Identities = 39/87 (44%), Positives = 56/87 (64%)
Frame = +3 / +1
Query: 18 GGPPDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVP 197
GG + P LPDGF + V RG +V W+PQ VLAH + F THCGWNS LE++ GVP
Sbjct: 424 GGGGEEVPPLPDGFNEEVRNRGKIVTWAPQREVLAHAAIGAFWTHCGWNSILESVCGGVP 603
Query: 198 VVAFPQWGDQCTDAKFLVDELGMGVRL 278
++ P + DQ +A+++ E G+G+ +
Sbjct: 604 MLVQPCFADQMVNARYVTREWGVGMEV 684
Score = 26.3 bits (51), Expect(2) = 2e-023
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / +1
Query: 1 GRPFLWVVRP 30
G PFLWVVRP
Sbjct: 373 GVPFLWVVRP 402
>gb|CW087764.1|CW087764 104_432_10947820_116_32557_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947820, DNA
sequence
Length = 726
Score = 104 bits (221), Expect(2) = 2e-023
Identities = 39/87 (44%), Positives = 56/87 (64%)
Frame = +3 / -2
Query: 18 GGPPDTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVP 197
GG + P LPDGF + V RG +V W+PQ VLAH + F THCGWNS LE++ GVP
Sbjct: 407 GGGGEEVPPLPDGFNEEVRNRGKIVTWAPQREVLAHAAIGAFWTHCGWNSILESVCGGVP 228
Query: 198 VVAFPQWGDQCTDAKFLVDELGMGVRL 278
++ P + DQ +A+++ E G+G+ +
Sbjct: 227 MLVQPCFADQMVNARYVTREWGVGMEV 147
Score = 26.3 bits (51), Expect(2) = 2e-023
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 1 GRPFLWVVRP 30
G PFLWVVRP
Sbjct: 458 GVPFLWVVRP 429
>gb|CW289492.1|CW289492 104_768_11412507_116_35547_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412507, DNA
sequence
Length = 697
Score = 105 bits (225), Expect(2) = 2e-023
Identities = 42/87 (48%), Positives = 59/87 (67%)
Frame = +3 / -3
Query: 30 DTRPLLPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAF 209
D P P+GF +V GRG V+ W+PQ VLAHP+ F TH GWNSTLE+I+ GVP++
Sbjct: 518 DGGPDFPNGFEAAVHGRGKVIRWAPQLEVLAHPAVGGFWTHNGWNSTLESISEGVPMICR 339
Query: 210 PQWGDQCTDAKFLVDELGMGVRLRGPL 290
PQ+ DQ + +++V+ G+G+ L G L
Sbjct: 338 PQFADQMMNTRYVVNTWGVGLELEGEL 258
Score = 24.4 bits (47), Expect(2) = 2e-023
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / -3
Query: 1 GRPFLWVVR 27
G PFLWVVR
Sbjct: 566 GHPFLWVVR 540
>gb|CW391999.1|CW391999 fsbb001f078g16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078g16, DNA
sequence
Length = 665
Score = 100 bits (213), Expect(2) = 2e-023
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +3 / +2
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V +G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 362 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 541
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ D G G+R+
Sbjct: 542 MNQNYICDAWGTGLRI 589
Score = 29.9 bits (59), Expect(2) = 2e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 299 GRPFLWVVRP 328
>gb|BE597326.1|BE597326 PI1_72_B01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 644
Score = 100 bits (213), Expect(2) = 2e-023
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +3 / +2
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V +G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 206 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 385
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ D G G+R+
Sbjct: 386 MNQNYICDAWGTGLRI 433
Score = 29.9 bits (59), Expect(2) = 2e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 143 GRPFLWVVRP 172
>gb|CL164885.1|CL164885 104_359_10808216_116_31817_200 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808216, DNA
sequence
Length = 641
Score = 100 bits (213), Expect(2) = 2e-023
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +3 / -3
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V +G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 540 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 361
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ D G G+R+
Sbjct: 360 MNQNYICDAWGTGLRI 313
Score = 29.9 bits (59), Expect(2) = 2e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 603 GRPFLWVVRP 574
>gb|BZ691445.1|BZ691445 SP__Ba0008J08.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0008J08 5', DNA sequence
Length = 615
Score = 100 bits (213), Expect(2) = 2e-023
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +3 / -3
Query: 51 DGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQC 230
D F V +G VV W+PQ RVL+HPS ACF++HCGWNST+E + GVP + +P + DQ
Sbjct: 373 DQFRRRVGDKGLVVGWAPQQRVLSHPSVACFISHCGWNSTMEGVRHGVPFLCWPYFADQF 194
Query: 231 TDAKFLVDELGMGVRL 278
+ ++ D G G+R+
Sbjct: 193 MNQNYICDAWGTGLRI 146
Score = 29.9 bits (59), Expect(2) = 2e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 436 GRPFLWVVRP 407
>gb|CW239896.1|CW239896 104_698_11217909_116_37504_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11217909, DNA
sequence
Length = 692
Score = 110 bits (235), Expect = 3e-023
Identities = 40/70 (57%), Positives = 51/70 (72%)
Frame = +3 / -1
Query: 72 AGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLV 251
A RG +V W PQ LAHP+ CF THCGWNST+E ++AGVP+VA P W DQ T+AK++
Sbjct: 656 ASRGLLVSWCPQLEFLAHPAVGCFFTHCGWNSTVEALSAGVPMVAMPDWSDQTTNAKYIQ 477
Query: 252 DELGMGVRLR 281
D +GVR+R
Sbjct: 476 DVWRVGVRVR 447
>gb|CD224613.1|CD224613 CCC1_35_F08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_35_F08_A007 3', mRNA sequence
Length = 609
Score = 110 bits (235), Expect = 3e-023
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3 / +3
Query: 78 RGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDE 257
+G VVP+ PQ VLAH +T CFLTHCGWNST+E++A GVP+ A PQW DQ T AK++
Sbjct: 63 KGLVVPFCPQLEVLAHKATGCFLTHCGWNSTIESMATGVPMAAMPQWADQPTTAKYVESA 242
Query: 258 LGMGVRLR 281
G+GVR+R
Sbjct: 243 WGIGVRMR 266
>gb|CL189680.1|CL189680 104_407_10905541_116_32481_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905541, DNA
sequence
Length = 677
Score = 86.8 bits (183), Expect(2) = 4e-023
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +3 / -1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVP 197
LP+ F D RG VV WSPQ V+AHP+ CF+THCGWNST+E + AGVP
Sbjct: 257 LPENFTDMAKERGLVVTWSPQLEVVAHPAVGCFVTHCGWNSTMEGLGAGVP 105
Score = 42.8 bits (87), Expect(2) = 4e-023
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3 / -2
Query: 192 VPVVAFPQWGDQCTDAKFLVDELGMGVRLR 281
VP+VA PQW DQ +AK++ D +GVR+R
Sbjct: 103 VPMVAMPQWSDQSMNAKYIEDVWRVGVRVR 14
>gb|CW500380.1|CW500380 fsbb001f295k23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f295k23, DNA
sequence
Length = 503
Score = 86.8 bits (183), Expect(2) = 4e-023
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +3 / -1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVP 197
LP+ F D RG VV WSPQ V+AHP+ CF+THCGWNST+E + AGVP
Sbjct: 401 LPENFTDMAKERGLVVTWSPQLEVVAHPAVGCFVTHCGWNSTMEGLGAGVP 249
Score = 42.8 bits (87), Expect(2) = 4e-023
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3 / -2
Query: 192 VPVVAFPQWGDQCTDAKFLVDELGMGVRLR 281
VP+VA PQW DQ +AK++ D +GVR+R
Sbjct: 247 VPMVAMPQWSDQSMNAKYIEDVWRVGVRVR 158
>gb|CW785094.1|CW785094 SP__Ba0007P10.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0007P10 5', DNA sequence
Length = 878
Score = 109 bits (233), Expect = 5e-023
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = +3 / +1
Query: 78 RGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQCTDAKFLVDE 257
RG +V WSPQ VLAHP+ CF+THCGWNST+E + GVP+VA PQW DQ +AK++ D
Sbjct: 40 RGLIVAWSPQLEVLAHPAVGCFVTHCGWNSTMEGLGIGVPMVAMPQWSDQPMNAKYIEDV 219
Query: 258 LGMGVRLRGPL 290
+GVR R +
Sbjct: 220 WRVGVRARSDM 252
>gb|CW381313.1|CW381313 fsbb001f062k12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f062k12, DNA
sequence
Length = 693
Score = 99.1 bits (210), Expect(2) = 5e-023
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = +3 / -2
Query: 48 PDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQ 227
PD F +V RG +V WSPQ RVLAHP+ ACF++HCGWNS +E I G+P + +P + DQ
Sbjct: 302 PDEFPKTVEKRGKIVTWSPQHRVLAHPAVACFMSHCGWNSVMEGIRNGLPFLTWPYFADQ 123
Query: 228 CTDAKFLVDELGMGVRL 278
+ ++ D G+RL
Sbjct: 122 FINESYVCDVWKTGLRL 72
Score = 29.9 bits (59), Expect(2) = 5e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -2
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 356 GRPFLWVVRP 327
>gb|CW351772.1|CW351772 fsbb001f013k19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f013k19, DNA
sequence
Length = 648
Score = 99.1 bits (210), Expect(2) = 5e-023
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = +3 / -3
Query: 48 PDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGDQ 227
PD F +V RG +V WSPQ RVLAHP+ ACF++HCGWNS +E I G+P + +P + DQ
Sbjct: 445 PDEFPKTVEKRGKIVTWSPQHRVLAHPAVACFMSHCGWNSVMEGIRNGLPFLTWPYFADQ 266
Query: 228 CTDAKFLVDELGMGVRL 278
+ ++ D G+RL
Sbjct: 265 FINESYVCDVWKTGLRL 215
Score = 29.9 bits (59), Expect(2) = 5e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1 / -3
Query: 1 GRPFLWVVRP 30
GRPFLWVVRP
Sbjct: 499 GRPFLWVVRP 470
>gb|CW494886.1|CW494886 fsbb001f286g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286g11, DNA
sequence
Length = 862
Score = 102 bits (218), Expect(2) = 9e-023
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +3 / -3
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDGF+ +V GRG V+ W+PQ VLAHP+ F TH GWNSTLE+I GVP+++ P +GD
Sbjct: 563 LPDGFMPAVEGRGKVIEWAPQLEVLAHPAVGGFWTHNGWNSTLESIYEGVPMLSRPIFGD 384
Query: 225 QCTDAKFLVDELGMGVRLRGPL 290
Q A+++ D +G+ L G L
Sbjct: 383 QLPTARYVRDIWKIGILLDGVL 318
Score = 25.4 bits (49), Expect(2) = 9e-023
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / -3
Query: 1 GRPFLWVVR 27
G+PFLWVVR
Sbjct: 626 GKPFLWVVR 600
>gb|CW397587.1|CW397587 fsbb001f086k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086k03, DNA
sequence
Length = 705
Score = 102 bits (218), Expect(2) = 9e-023
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +3 / +1
Query: 45 LPDGFLDSVAGRGAVVPWSPQDRVLAHPSTACFLTHCGWNSTLETIAAGVPVVAFPQWGD 224
LPDGF+ +V GRG V+ W+PQ VLAHP+ F TH GWNSTLE+I GVP+++ P +GD
Sbjct: 169 LPDGFMPAVEGRGKVIEWAPQLEVLAHPAVGGFWTHNGWNSTLESIYEGVPMLSRPIFGD 348
Query: 225 QCTDAKFLVDELGMGVRLRGPL 290
Q A+++ D +G+ L G L
Sbjct: 349 QLPTARYVRDIWKIGILLDGVL 414
Score = 25.4 bits (49), Expect(2) = 9e-023
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +1
Query: 1 GRPFLWVVR 27
G+PFLWVVR
Sbjct: 106 GKPFLWVVR 132
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 951,861,187
Number of Sequences: 832831
Number of extensions: 17787022
Number of successful extensions: 447894
Number of sequences better than 1.0e-020: 95
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 25307314266
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)