TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.3
(622 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN127950.1|CN127950 RHOH1_26_C10.b1_A002 Acid- and alkal... 248 2e-066
gb|CN124163.1|CN124163 RHOH1_3_B09.b1_A002 Acid- and alkali... 248 4e-065
gb|BM330954.1|BM330954 PIC1_67_F03.g1_A002 Pathogen-infecte... 172 5e-042
gb|CD213624.1|CD213624 HS1_52_G04.b1_A012 Heat-shocked seed... 139 4e-032
gb|CN125588.1|CN125588 RHOH1_12_B03.b1_A002 Acid- and alkal... 137 2e-031
gb|CN146030.1|CN146030 WOUND1_37_A04.b1_A002 Wounded leaves... 137 2e-031
gb|CX614598.1|CX614598 GABR1_15_C04.b1_A002 GA- or brassino... 137 2e-031
gb|CW320108.1|CW320108 104_813_11474839_148_35894_032 Sorgh... 125 7e-028
gb|CW221907.1|CW221907 104_657_11202096_116_37451_094 Sorgh... 63 2e-026
gb|CW150814.1|CW150814 104_551_11143612_116_36314_010 Sorgh... 63 4e-026
gb|CW121998.1|CW121998 104_500_11110302_116_34668_025 Sorgh... 83 3e-025
gb|CW390379.1|CW390379 fsbb001f076a05k0 Sorghum methylation... 62 2e-024
gb|CW442745.1|CW442745 fsbb001f162i18f0 Sorghum methylation... 62 2e-024
gb|BE363139.1|BE363139 DG1_9_D02.g1_A002 Dark Grown 1 (DG1)... 87 2e-023
gb|CW234023.1|CW234023 104_687_11213759_116_37381_088 Sorgh... 85 1e-021
>gb|CN127950.1|CN127950 RHOH1_26_C10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_C10_A002 3', mRNA sequence
Length = 800
Score = 248 bits (537), Expect(2) = 2e-066
Identities = 104/135 (77%), Positives = 120/135 (88%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SSKI+L YF GDRET+EN LRN+VDVRDVADALLLAYEKPEASGRYICSS IKV+DMIN
Sbjct: 82 SSKILLNYFKGDRETIENRLRNIVDVRDVADALLLAYEKPEASGRYICSSQPIKVSDMIN 261
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*TS 261
ILKTLYP+YPYPKNFVE D NS+YSSEKLQKLGW+F+PIEE+LR++VESYKAFGILN* S
Sbjct: 262 ILKTLYPTYPYPKNFVEMDDNSIYSSEKLQKLGWTFRPIEETLRESVESYKAFGILN*AS 441
Query: 260 SYDCSICCFCLRTLS 216
++D +++LS
Sbjct: 442 NWDSETAVPTVQSLS 486
Score = 199 bits (430), Expect(2) = 4e-053
Identities = 86/122 (70%), Positives = 95/122 (77%)
Frame = +3 / -3
Query: 249 TVVAGCSIQDAKCFVGFNSVAEGFLYRLEAPPQLLQFLRAVYRVDIIFHKIFGIRVRWIQ 428
TV G SIQDAKCFVGFN+ AEG LYR E PP LL+FLR VY V I FHK+FGIRV WI
Sbjct: 453 TVPVGRSIQDAKCFVGFNTFAEGLLYRPEGPP*LLKFLRTVYGVVIHFHKVFGIRVSWI* 274
Query: 429 GLQYVYHISNFYCM*TADVSSRRFWLFVSQKKSVSNITNIHHISEYVFNSLAISCEIFKD 608
L YVYHI NFY +* ADVSSRRFW F+ QKKS+SNITNIH+ISE +FN L IS EI K+
Sbjct: 273 SL*YVYHIRNFYWL*AADVSSRRFWFFICQKKSISNITNIHNISESIFNGLTISFEIVKE 94
Query: 609 DF 614
F
Sbjct: 93 YF 88
Score = 188 bits (404), Expect = 9e-047
Identities = 92/136 (67%), Positives = 97/136 (71%)
Frame = -1 / +2
Query: 622 RAAKSSLNISQEIARLLKTYSEIWWMFVMLLTLFFWLTKSQKRLDDTSAVHMQ*KLLI** 443
R K SL IS+EI R LK SEI WMFVMLL LFFW K+QKRLDDTSA H Q*K LI**
Sbjct: 80 RVVKYSLTISKEIVRPLKIDSEILWMFVMLLMLFFWHMKNQKRLDDTSAAHNQ*KFLI** 259
Query: 442 TY*RPCIHLTLIPKILWKMMSTLYTALRNCRSWGGASSL*RNPSATLLNPTKHLAS*IEH 263
TY*R I LTLIPK LWK M+T YT LRN RS GG S L*R PSA +LNPTKHLAS*IE
Sbjct: 260 TY*RLYIQLTLIPKTLWKWMTTPYTVLRNFRS*GGPSGL*RRPSAKVLNPTKHLAS*IER 439
Query: 262 PATTVPSAVFASELFL 215
P TV S +L
Sbjct: 440 PTGTVKQQFQQSNPYL 487
Score = 165 bits (354), Expect = 7e-040
Identities = 77/121 (63%), Positives = 82/121 (67%)
Frame = +1 / -1
Query: 259 LDVQFRMPNAL*DSTVSRRDSSIGLKLHPSFCXXXXXXXXXXXXXXKFLG*G*DGYKVFS 438
LD QFRMPNAL*DST+SRR SSIGLK+HPSF KFLG*G* GYKVF+
Sbjct: 443 LDAQFRMPNAL*DSTLSRRVSSIGLKVHPSF*SFSELYMELSSISTKFLG*G*VGYKVFN 264
Query: 439 MFIISATFIACELQMYRPDASGFXXXXXXXXXXXXXXXIFLSMFSTVSRSPVKYSRMILL 618
MFIIS TFI CELQMYRPDASGF IFLS+FS VSRSP+K R ILL
Sbjct: 263 MFIISETFIGCELQMYRPDASGFSYARRRASATSRTSTIFLSLFSMVSRSPLK*LRSILL 84
Query: 619 L 621
L
Sbjct: 83 L 81
Score = 144 bits (310), Expect(2) = 2e-036
Identities = 62/84 (73%), Positives = 68/84 (80%)
Frame = -2 / +3
Query: 507 KARSVWTIHLQFTCNKSC*YDKHTEDLVSILPLSQKFCGR*CQLCIQL*ETAEAGVELQA 328
K RSVWTIHLQ T NKS *YDKH +D +S LPLSQK CG QL IQ *ET+EA V+LQA
Sbjct: 195 KTRSVWTIHLQLTTNKSF*YDKHIKDFISNLPLSQKLCGNG*QLHIQF*ETSEARVDLQA 374
Query: 327 YRGIPPRHC*ILQSIWHPELNIQL 256
YRG PPR C*ILQSIWHPEL++QL
Sbjct: 375 YRGDPPRKC*ILQSIWHPELSVQL 446
Score = 125 bits (268), Expect(2) = 4e-030
Identities = 51/84 (60%), Positives = 57/84 (67%)
Frame = +2 / -2
Query: 257 SWMFNSGCQMLCRIQQCRGGIPLXXXXXXXXXXXXXXCIQS*HHLPQNFWDKGKMDTRSS 436
SW NSGCQMLCRIQ RGG PL CI S H PQ+FWDKGK+D +S
Sbjct: 445 SWTLNSGCQMLCRIQHFRGGSPL*A*RSTLASEVSQNCIWSCHPFPQSFWDKGKLDIKSL 266
Query: 437 VCLSYQQLLLHVNCRCIVQTLLAF 508
+CLSYQ+LLL V+CRCIVQTLL F
Sbjct: 265 ICLSYQKLLLVVSCRCIVQTLLVF 194
Score = 29.5 bits (58), Expect(2) = 4e-053
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1 / -3
Query: 166 GLTCWQCCFT 195
GL CW CCFT
Sbjct: 480 GLDCWNCCFT 451
Score = 29.0 bits (57), Expect(2) = 2e-036
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / +3
Query: 612 NHP*IFHRRSRDC*KHTQKY 553
N P*+F RRS D *K TQKY
Sbjct: 90 NTP*LFQRRS*DH*K*TQKY 149
Score = 26.7 bits (52), Expect(2) = 4e-030
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2 / -2
Query: 554 YF*VCFQQSRDLL*NIQG*F 613
YF*V FQ S DLL*N G F
Sbjct: 148 YF*VYFQWSHDLL*NS*GVF 89
Score = 25.4 bits (49), Expect(2) = 2e-066
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1 / +2
Query: 115 QYYLVVQDQISRPRADWFMA 56
Q YL + ++SRPR W +A
Sbjct: 572 QCYLGIPYEMSRPRLTWLLA 631
>gb|CN124163.1|CN124163 RHOH1_3_B09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_3_B09_A002 3', mRNA sequence
Length = 695
Score = 248 bits (537), Expect = 4e-065
Identities = 104/135 (77%), Positives = 120/135 (88%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SSKI+L YF GDRET+EN LRN+VDVRDVADALLLAYEKPEASGRYICSS IKV+DMIN
Sbjct: 217 SSKILLNYFKGDRETIENRLRNIVDVRDVADALLLAYEKPEASGRYICSSQPIKVSDMIN 396
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*TS 261
ILKTLYP+YPYPKNFVE D NS+YSSEKLQKLGW+F+PIEE+LR++VESYKAFGILN* S
Sbjct: 397 ILKTLYPTYPYPKNFVEMDDNSIYSSEKLQKLGWTFRPIEETLRESVESYKAFGILN*AS 576
Query: 260 SYDCSICCFCLRTLS 216
++D +++LS
Sbjct: 577 NWDSETAVPTVQSLS 621
Score = 199 bits (430), Expect(2) = 4e-053
Identities = 86/122 (70%), Positives = 95/122 (77%)
Frame = +3 / -3
Query: 249 TVVAGCSIQDAKCFVGFNSVAEGFLYRLEAPPQLLQFLRAVYRVDIIFHKIFGIRVRWIQ 428
TV G SIQDAKCFVGFN+ AEG LYR E PP LL+FLR VY V I FHK+FGIRV WI
Sbjct: 588 TVPVGRSIQDAKCFVGFNTFAEGLLYRPEGPP*LLKFLRTVYGVVIHFHKVFGIRVSWI* 409
Query: 429 GLQYVYHISNFYCM*TADVSSRRFWLFVSQKKSVSNITNIHHISEYVFNSLAISCEIFKD 608
L YVYHI NFY +* ADVSSRRFW F+ QKKS+SNITNIH+ISE +FN L IS EI K+
Sbjct: 408 SL*YVYHIRNFYWL*AADVSSRRFWFFICQKKSISNITNIHNISESIFNGLTISFEIVKE 229
Query: 609 DF 614
F
Sbjct: 228 YF 223
Score = 188 bits (404), Expect = 9e-047
Identities = 92/136 (67%), Positives = 97/136 (71%)
Frame = -1 / +2
Query: 622 RAAKSSLNISQEIARLLKTYSEIWWMFVMLLTLFFWLTKSQKRLDDTSAVHMQ*KLLI** 443
R K SL IS+EI R LK SEI WMFVMLL LFFW K+QKRLDDTSA H Q*K LI**
Sbjct: 215 RVVKYSLTISKEIVRPLKIDSEILWMFVMLLMLFFWHMKNQKRLDDTSAAHNQ*KFLI** 394
Query: 442 TY*RPCIHLTLIPKILWKMMSTLYTALRNCRSWGGASSL*RNPSATLLNPTKHLAS*IEH 263
TY*R I LTLIPK LWK M+T YT LRN RS GG S L*R PSA +LNPTKHLAS*IE
Sbjct: 395 TY*RLYIQLTLIPKTLWKWMTTPYTVLRNFRS*GGPSGL*RRPSAKVLNPTKHLAS*IER 574
Query: 262 PATTVPSAVFASELFL 215
P TV S +L
Sbjct: 575 PTGTVKQQFQQSNPYL 622
Score = 165 bits (354), Expect = 7e-040
Identities = 77/121 (63%), Positives = 82/121 (67%)
Frame = +1 / -1
Query: 259 LDVQFRMPNAL*DSTVSRRDSSIGLKLHPSFCXXXXXXXXXXXXXXKFLG*G*DGYKVFS 438
LD QFRMPNAL*DST+SRR SSIGLK+HPSF KFLG*G* GYKVF+
Sbjct: 578 LDAQFRMPNAL*DSTLSRRVSSIGLKVHPSF*SFSELYMELSSISTKFLG*G*VGYKVFN 399
Query: 439 MFIISATFIACELQMYRPDASGFXXXXXXXXXXXXXXXIFLSMFSTVSRSPVKYSRMILL 618
MFIIS TFI CELQMYRPDASGF IFLS+FS VSRSP+K R ILL
Sbjct: 398 MFIISETFIGCELQMYRPDASGFSYARRRASATSRTSTIFLSLFSMVSRSPLK*LRSILL 219
Query: 619 L 621
L
Sbjct: 218 L 216
Score = 144 bits (310), Expect(2) = 2e-036
Identities = 62/84 (73%), Positives = 68/84 (80%)
Frame = -2 / +3
Query: 507 KARSVWTIHLQFTCNKSC*YDKHTEDLVSILPLSQKFCGR*CQLCIQL*ETAEAGVELQA 328
K RSVWTIHLQ T NKS *YDKH +D +S LPLSQK CG QL IQ *ET+EA V+LQA
Sbjct: 330 KTRSVWTIHLQLTTNKSF*YDKHIKDFISNLPLSQKLCGNG*QLHIQF*ETSEARVDLQA 509
Query: 327 YRGIPPRHC*ILQSIWHPELNIQL 256
YRG PPR C*ILQSIWHPEL++QL
Sbjct: 510 YRGDPPRKC*ILQSIWHPELSVQL 581
Score = 125 bits (268), Expect(2) = 4e-030
Identities = 51/84 (60%), Positives = 57/84 (67%)
Frame = +2 / -2
Query: 257 SWMFNSGCQMLCRIQQCRGGIPLXXXXXXXXXXXXXXCIQS*HHLPQNFWDKGKMDTRSS 436
SW NSGCQMLCRIQ RGG PL CI S H PQ+FWDKGK+D +S
Sbjct: 580 SWTLNSGCQMLCRIQHFRGGSPL*A*RSTLASEVSQNCIWSCHPFPQSFWDKGKLDIKSL 401
Query: 437 VCLSYQQLLLHVNCRCIVQTLLAF 508
+CLSYQ+LLL V+CRCIVQTLL F
Sbjct: 400 ICLSYQKLLLVVSCRCIVQTLLVF 329
Score = 29.5 bits (58), Expect(2) = 4e-053
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1 / -3
Query: 166 GLTCWQCCFT 195
GL CW CCFT
Sbjct: 615 GLDCWNCCFT 586
Score = 29.0 bits (57), Expect(2) = 2e-036
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / +3
Query: 612 NHP*IFHRRSRDC*KHTQKY 553
N P*+F RRS D *K TQKY
Sbjct: 225 NTP*LFQRRS*DH*K*TQKY 284
Score = 26.7 bits (52), Expect(2) = 4e-030
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2 / -2
Query: 554 YF*VCFQQSRDLL*NIQG*F 613
YF*V FQ S DLL*N G F
Sbjct: 283 YF*VYFQWSHDLL*NS*GVF 224
>gb|BM330954.1|BM330954 PIC1_67_F03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 515
Score = 172 bits (370), Expect = 5e-042
Identities = 69/113 (61%), Positives = 92/113 (81%)
Frame = -3 / +3
Query: 599 YFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYP 420
Y GD+ETV N N+VDVRDVADALLLAYE P+ASGRY+C S AI+V+D++N LKT YP
Sbjct: 6 YIKGDQETVNNGSMNLVDVRDVADALLLAYENPQASGRYLCCSPAIRVSDIVNTLKTSYP 185
Query: 419 SYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*TS 261
++ YP+ FVE + ++ Y +EKL+KLGW+ +P+EE+LRD+V+ Y+A GILN* S
Sbjct: 186 THTYPQKFVEVEGSNTYITEKLRKLGWTSRPMEETLRDSVDCYRALGILN*AS 344
Score = 105 bits (225), Expect = 5e-022
Identities = 52/127 (40%), Positives = 77/127 (60%)
Frame = +3 / -1
Query: 219 KSSEAKTADGTVVAGCSIQDAKCFVGFNSVAEGFLYRLEAPPQLLQFLRAVYRVDIIFHK 398
++S + ++ + G S+QD + V ++V +GFL+R PP L + LR + F++
Sbjct: 386 ENSSSSSSQSPELNGSSVQDPQSSVAIDAVPQGFLHRPRGPP*LPKLLRDICVATFHFNE 207
Query: 399 IFGIRVRWIQGLQYVYHISNFYCM*TADVSSRRFWLFVSQKKSVSNITNIHHISEYVFNS 578
GI V WI GL VY+I + YC *TA+V SR +FVSQ+K VS+ITNIH I + +
Sbjct: 206 FLGISVCWI*GL*CVYNIRDSYCW*TAEVPSRCLRIFVSQQKGVSDITNIH*IHGSIIDC 27
Query: 579 LAISCEI 599
L IS +I
Sbjct: 26 LLISFDI 6
>gb|CD213624.1|CD213624 HS1_52_G04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_G04_A012 3', mRNA sequence
Length = 604
Score = 139 bits (298), Expect = 4e-032
Identities = 58/102 (56%), Positives = 78/102 (76%)
Frame = -3 / +3
Query: 563 LRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDD 384
LRN VDVRDVADALLL YE PEASGRYIC ++A +V+D+I +LK YP+Y + V+
Sbjct: 171 LRNFVDVRDVADALLLVYETPEASGRYICDANARQVSDVIALLKNWYPAYNHATKLVQVS 350
Query: 383 VNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*TSS 258
++SS+KL+ LGW F+ EE+LRD+VES+ A G+L+*T+S
Sbjct: 351 DEPLFSSKKLEALGWKFRTFEETLRDSVESFTAAGVLD*TNS 476
>gb|CN125588.1|CN125588 RHOH1_12_B03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_12_B03_A002 3', mRNA sequence
Length = 763
Score = 137 bits (293), Expect = 2e-031
Identities = 57/102 (55%), Positives = 78/102 (76%)
Frame = -3 / +1
Query: 563 LRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDD 384
LRN VDVRDVA+ALLL YE PEASGRYIC ++A +V+D+I +LK YP+Y + V+
Sbjct: 328 LRNFVDVRDVANALLLVYETPEASGRYICDANARQVSDVIALLKNWYPAYNHATKLVQVS 507
Query: 383 VNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*TSS 258
++SS+KL+ LGW F+ EE+LRD+VES+ A G+L+*T+S
Sbjct: 508 DEPLFSSKKLEALGWKFRTFEETLRDSVESFTAAGVLD*TNS 633
>gb|CN146030.1|CN146030 WOUND1_37_A04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_A04_A002 3', mRNA sequence
Length = 732
Score = 137 bits (293), Expect = 2e-031
Identities = 57/102 (55%), Positives = 78/102 (76%)
Frame = -3 / +2
Query: 563 LRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDD 384
LRN VDVRDVA+ALLL YE PEASGRYIC ++A +V+D+I +LK YP+Y + V+
Sbjct: 296 LRNFVDVRDVANALLLVYETPEASGRYICDANARQVSDVIALLKNWYPAYNHATKLVQVS 475
Query: 383 VNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*TSS 258
++SS+KL+ LGW F+ EE+LRD+VES+ A G+L+*T+S
Sbjct: 476 DEPLFSSKKLEALGWKFRTFEETLRDSVESFTAAGVLD*TNS 601
>gb|CX614598.1|CX614598 GABR1_15_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_15_C04_A002 3', mRNA sequence
Length = 744
Score = 137 bits (293), Expect = 2e-031
Identities = 57/102 (55%), Positives = 78/102 (76%)
Frame = -3 / +3
Query: 563 LRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDD 384
LRN VDVRDVA+ALLL YE PEASGRYIC ++A +V+D+I +LK YP+Y + V+
Sbjct: 306 LRNFVDVRDVANALLLVYETPEASGRYICDANARQVSDVIALLKNWYPAYNHATKLVQVS 485
Query: 383 VNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*TSS 258
++SS+KL+ LGW F+ EE+LRD+VES+ A G+L+*T+S
Sbjct: 486 DEPLFSSKKLEALGWKFRTFEETLRDSVESFTAAGVLD*TNS 611
>gb|CW320108.1|CW320108 104_813_11474839_148_35894_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474839, DNA
sequence
Length = 722
Score = 125 bits (267), Expect = 7e-028
Identities = 54/66 (81%), Positives = 57/66 (86%)
Frame = -3 / +3
Query: 599 YFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYP 420
Y G+ ETVEN LRNMVDVRDVADALLLAYE EASGRYI SSH IKV+DMINILKTLYP
Sbjct: 114 YSAGNLETVENRLRNMVDVRDVADALLLAYENSEASGRYISSSHPIKVSDMINILKTLYP 293
Query: 419 SYPYPK 402
+Y YPK
Sbjct: 294 TYHYPK 311
Score = 123 bits (264), Expect = 2e-027
Identities = 53/67 (79%), Positives = 57/67 (85%)
Frame = +3 / -1
Query: 399 IFGIRVRWIQGLQYVYHISNFYCM*TADVSSRRFWLFVSQKKSVSNITNIHHISEYVFNS 578
+FGI V WI GLQYVYHI NFY M*TADVSSRRF +FVS KKS+SNITNIHHISE +FNS
Sbjct: 314 LFGIMVSWI*GLQYVYHIRNFYWM*TADVSSRRF*VFVS*KKSISNITNIHHISESIFNS 135
Query: 579 LAISCEI 599
L ISC I
Sbjct: 134 LEISCRI 114
Score = 118 bits (252), Expect = 9e-026
Identities = 54/66 (81%), Positives = 58/66 (87%)
Frame = -1 / +1
Query: 598 ISQEIARLLKTYSEIWWMFVMLLTLFFWLTKSQKRLDDTSAVHMQ*KLLI**TY*RPCIH 419
I QEI+RLLK SEIWWMFVMLL LFF LTK+QKRLDDTSAVH+Q*K LI**TY*RP I
Sbjct: 115 ILQEISRLLKIDSEIWWMFVMLLMLFF*LTKTQKRLDDTSAVHIQ*KFLI**TY*RPYIQ 294
Query: 418 LTLIPK 401
LT+IPK
Sbjct: 295 LTIIPK 312
>gb|CW221907.1|CW221907 104_657_11202096_116_37451_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202096, DNA
sequence
Length = 692
Score = 62.9 bits (131), Expect(3) = 2e-026
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -3 / +1
Query: 398 FVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN* 267
FV+ + SS++LQ LGW F+ +EE+LRDT++SYKA GILN*
Sbjct: 265 FVQKEDEKGVSSKRLQALGWKFRTVEETLRDTIDSYKAAGILN* 396
Score = 52.8 bits (109), Expect(3) = 2e-026
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = -3 / +2
Query: 581 ETVENILRNMVDVRDVADALLLAYEKPEASGR 486
E + RNMVDVRDVADAL+L YE PEA+GR
Sbjct: 2 ENTDEKRRNMVDVRDVADALVLTYETPEAAGR 97
Score = 41.8 bits (85), Expect(3) = 2e-026
Identities = 14/26 (53%), Positives = 23/26 (88%)
Frame = -3 / +2
Query: 497 ASGRYICSSHAIKVADMINILKTLYP 420
A RYICS+HA+KV+++I+++ +LYP
Sbjct: 89 AGRRYICSAHAMKVSEIISLVSSLYP 166
>gb|CW150814.1|CW150814 104_551_11143612_116_36314_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143612, DNA
sequence
Length = 540
Score = 62.9 bits (131), Expect(3) = 4e-026
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -3 / -3
Query: 398 FVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN* 267
FV+ + SS++LQ LGW F+ +EE+LRDT++SYKA GILN*
Sbjct: 226 FVQKEDEKGVSSKRLQALGWKFRTVEETLRDTIDSYKAAGILN* 95
Score = 51.5 bits (106), Expect(3) = 4e-026
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = -3 / -1
Query: 581 ETVENILRNMVDVRDVADALLLAYEKPEASGR 486
ET + RNMVDVRDVADAL+L YE PEA+ R
Sbjct: 489 ETPDEKRRNMVDVRDVADALVLTYETPEAAAR 394
Score = 42.3 bits (86), Expect(3) = 4e-026
Identities = 14/26 (53%), Positives = 24/26 (92%)
Frame = -3 / -1
Query: 497 ASGRYICSSHAIKVADMINILKTLYP 420
A+ RYICS+HA+KV+++I+++ +LYP
Sbjct: 402 AARRYICSAHAMKVSEIISLVSSLYP 325
>gb|CW121998.1|CW121998 104_500_11110302_116_34668_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110302, DNA
sequence
Length = 657
Score = 82.6 bits (174), Expect(2) = 3e-025
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = -3 / +1
Query: 401 NFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGIL 273
+FVE D SV+SS+KLQKLGW+FKPIEE LRDTVESYKAFGIL
Sbjct: 496 SFVEVDDYSVFSSKKLQKLGWTFKPIEEILRDTVESYKAFGIL 624
Score = 75.8 bits (159), Expect(2) = 1e-021
Identities = 32/44 (72%), Positives = 36/44 (81%)
Frame = -1 / +2
Query: 400 ILWKMMSTLYTALRNCRSWGGASSL*RNPSATLLNPTKHLAS*I 269
+LWK M+TLY+ LRNCRS G SSL*R S TLLNPTKHLAS*+
Sbjct: 497 VLWKWMTTLYSVLRNCRS*AGPSSL*RKSSVTLLNPTKHLAS*L 628
Score = 74.4 bits (156), Expect(2) = 3e-023
Identities = 32/41 (78%), Positives = 32/41 (78%)
Frame = +3 / -1
Query: 276 DAKCFVGFNSVAEGFLYRLEAPPQLLQFLRAVYRVDIIFHK 398
DAKCFVGFNSV E FLYRLE P LLQFLR YRV I FHK
Sbjct: 621 DAKCFVGFNSVTEDFLYRLEGPA*LLQFLRTEYRVVIHFHK 499
Score = 56.5 bits (117), Expect(2) = 3e-023
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2 / -3
Query: 401 FWDKGKMDTRSSVCLSYQQLLLHVNC 478
FWD GK+D RSS+CLSYQ+LLL VNC
Sbjct: 82 FWDNGKLDIRSSICLSYQKLLLDVNC 5
Score = 55.1 bits (114), Expect(2) = 3e-025
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -3 / +1
Query: 482 ICSSHAIKVADMINILKTLYPSYPYPK 402
I SSH IKV+DMINILKTLYP+Y YPK
Sbjct: 1 ISSSHPIKVSDMINILKTLYPTYHYPK 81
Score = 49.6 bits (102), Expect(2) = 1e-021
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = -2 / +3
Query: 477 QFTCNKSC*YDKHTEDLVSILPLSQK 400
QFT NKS *YDKH EDL+S LPLSQK
Sbjct: 6 QFTSNKSF*YDKHIEDLISNLPLSQK 83
>gb|CW390379.1|CW390379 fsbb001f076a05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076a05, DNA
sequence
Length = 622
Score = 62.5 bits (130), Expect(3) = 2e-024
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -3 / -2
Query: 398 FVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN* 267
FV+ + SS++LQ LGW F+ +EE+LRDT++SYKA GILN*
Sbjct: 189 FVQREDEKGVSSKRLQALGWKFRAVEETLRDTIDSYKAAGILN* 58
Score = 53.3 bits (110), Expect(3) = 2e-024
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3 / -1
Query: 560 RNMVDVRDVADALLLAYEKPEASGR 486
RNMVDVRDVADAL+L YE PEASGR
Sbjct: 469 RNMVDVRDVADALVLTYETPEASGR 395
Score = 37.3 bits (75), Expect(3) = 2e-024
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = -3 / -1
Query: 488 RYICSSHAIKVADMINILKTLYP 420
RYICS+HA+KV++ + ++ +L+P
Sbjct: 391 RYICSAHAMKVSETVGLVSSLFP 323
>gb|CW442745.1|CW442745 fsbb001f162i18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f162i18, DNA
sequence
Length = 715
Score = 62.5 bits (130), Expect(3) = 2e-024
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -3 / -2
Query: 398 FVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN* 267
FV+ + SS++LQ LGW F+ +EE+LRDT++SYKA GILN*
Sbjct: 267 FVQREDEKGVSSKRLQALGWKFRAVEETLRDTIDSYKAAGILN* 136
Score = 53.3 bits (110), Expect(3) = 2e-024
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3 / -1
Query: 560 RNMVDVRDVADALLLAYEKPEASGR 486
RNMVDVRDVADAL+L YE PEASGR
Sbjct: 547 RNMVDVRDVADALVLTYETPEASGR 473
Score = 37.3 bits (75), Expect(3) = 2e-024
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = -3 / -1
Query: 488 RYICSSHAIKVADMINILKTLYP 420
RYICS+HA+KV++ + ++ +L+P
Sbjct: 469 RYICSAHAMKVSETVGLVSSLFP 401
>gb|BE363139.1|BE363139 DG1_9_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 453
Score = 86.8 bits (183), Expect(2) = 2e-023
Identities = 33/71 (46%), Positives = 51/71 (71%)
Frame = -3 / +2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
S + ++ + G + V N L ++VDVRD+ADALLL YE PEA+GR+IC+ H I D+++
Sbjct: 68 SIQFLIYFLKGGPDLVRNKLWHVVDVRDLADALLLLYEVPEAAGRHICAPHVISARDLLD 247
Query: 440 ILKTLYPSYPY 408
+LK++YP P+
Sbjct: 248 LLKSMYPDNPF 280
Score = 43.2 bits (88), Expect(2) = 2e-023
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -3 / +2
Query: 368 SSEKLQKLGWSFKPIEESLRDTVESYKAFGILN 270
+S+KL+ LGWS +P+EE++ DTVE + G L+
Sbjct: 326 TSDKLKNLGWSCRPLEETILDTVECCQRAGFLD 424
>gb|CW234023.1|CW234023 104_687_11213759_116_37381_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213759, DNA
sequence
Length = 705
Score = 84.9 bits (179), Expect(2) = 1e-021
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = -3 / +3
Query: 605 LEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTL 426
L+Y TG + + N + ++VDVRDVADALLL YE +SGRYICS + + D++++LK +
Sbjct: 159 LDYVTGGPDVMTNRMWDVVDVRDVADALLLLYENDRSSGRYICSPNRVCTRDLVDLLKKM 338
Query: 425 YPSYPY 408
YP Y Y
Sbjct: 339 YPEYGY 356
Score = 40.9 bits (83), Expect(2) = 1e-021
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -3 / +1
Query: 389 DDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGIL 273
D SS+KL+ LGW + +E +L D+V+SY+ G+L
Sbjct: 496 DHAGPPLSSQKLKDLGWEPRKLESTLSDSVQSYEKAGLL 612
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 748,939,955
Number of Sequences: 832831
Number of extensions: 9820165
Number of successful extensions: 78040
Number of sequences better than 1.0e-020: 15
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18305916489
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)