TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.11
(514 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cD... 119 3e-026
gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1... 118 5e-026
gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (L... 118 5e-026
gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (L... 118 5e-026
gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sor... 118 5e-026
gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stresse... 118 5e-026
gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stresse... 118 5e-026
gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sor... 116 2e-025
>gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0111, mRNA sequence
Length = 371
Score = 119 bits (254), Expect = 3e-026
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = +3 / -2
Query: 105 PEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
P MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 370 PLWMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 221
Score = 117 bits (250), Expect = 1e-025
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -1 / +3
Query: 250 EYLRFLRNLGSIPLVEVCRWRLGFLMPFLCALYDWLCAVWFFDLAISSG 104
EYL+FLRNLGSIPLVEV RWRLGFLMPFLCALYDWLCAVWFFDLAI G
Sbjct: 225 EYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIQRG 371
Score = 110 bits (235), Expect = 1e-023
Identities = 43/62 (69%), Positives = 44/62 (70%)
Frame = -2 / +1
Query: 297 FLPTPQPHHSSCCPSLNXXXXXXXXXXXXXWRSAGGAWAS*CRSCAPCTTGCAPCGSSTW 118
F P PQPHHSSCCPSL+ WRS GGAWAS*CRSCAPCTTG APCGS TW
Sbjct: 178 FTPLPQPHHSSCCPSLSTSSSSET*GPSPWWRSGGGAWAS*CRSCAPCTTGYAPCGSLTW 357
Query: 117 PS 112
PS
Sbjct: 358 PS 363
>gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 472
Score = 118 bits (253), Expect = 5e-026
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = +3 / +2
Query: 114 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 80 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 220
Score = 114 bits (244), Expect = 8e-025
Identities = 45/52 (86%), Positives = 47/52 (90%)
Frame = -1 / -2
Query: 250 EYLRFLRNLGSIPLVEVCRWRLGFLMPFLCALYDWLCAVWFFDLAISSGSRS 95
EYL+FLRN GSIPLVEV RWRLGFLMPFLCALYDWLCAVWFFDLAI + S S
Sbjct: 216 EYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCS 61
Score = 109 bits (232), Expect = 4e-023
Identities = 42/60 (70%), Positives = 43/60 (71%)
Frame = -2 / -3
Query: 291 PTPQPHHSSCCPSLNXXXXXXXXXXXXXWRSAGGAWAS*CRSCAPCTTGCAPCGSSTWPS 112
P PQPH SSCCPSL+ WRS GGAWAS*CRSCAPCTTG APCGSSTWPS
Sbjct: 257 PLPQPHRSSCCPSLSTSSSSETSGPSPWWRSGGGAWAS*CRSCAPCTTGYAPCGSSTWPS 78
Score = 103 bits (220), Expect = 2e-021
Identities = 42/48 (87%), Positives = 43/48 (89%)
Frame = +2 / +1
Query: 110 RDGQVEEPHGAQPVVQGAQERHQEAQAPPADLHQGDGPQVPEEPEVFK 253
RDGQVEEPHGA PVVQGAQERHQEAQAPP DLHQGDGP+V EE EV K
Sbjct: 76 RDGQVEEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLK 219
>gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 118 bits (253), Expect = 5e-026
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = +3 / +1
Query: 114 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 70 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 210
Score = 116 bits (248), Expect = 2e-025
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = -1 / -2
Query: 250 EYLRFLRNLGSIPLVEVCRWRLGFLMPFLCALYDWLCAVWFFDLAISSGSRS 95
EYL+FLRNLGSIPLVEV RWRLGFLMPFLCALYDWLCAVWFFDLAI + S S
Sbjct: 206 EYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCS 51
Score = 106 bits (227), Expect = 2e-022
Identities = 42/62 (67%), Positives = 43/62 (69%)
Frame = -2 / -3
Query: 297 FLPTPQPHHSSCCPSLNXXXXXXXXXXXXXWRSAGGAWAS*CRSCAPCTTGCAPCGSSTW 118
F P PQ HHSSCCPSL+ WRS GGAWAS*CRSCAPCTTG APCGS TW
Sbjct: 253 FTPLPQAHHSSCCPSLSTSSSSET*GPSPWWRSGGGAWAS*CRSCAPCTTGYAPCGSLTW 74
Query: 117 PS 112
PS
Sbjct: 73 PS 68
>gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 419
Score = 118 bits (253), Expect = 5e-026
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = +3 / +2
Query: 114 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 56 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 196
Score = 116 bits (248), Expect = 2e-025
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = -1 / -3
Query: 250 EYLRFLRNLGSIPLVEVCRWRLGFLMPFLCALYDWLCAVWFFDLAISSGSRS 95
EYL+FLRNLGSIPLVEV RWRLGFLMPFLCALYDWLCAVWFFDLAI + S S
Sbjct: 192 EYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCS 37
Score = 106 bits (227), Expect = 2e-022
Identities = 42/62 (67%), Positives = 43/62 (69%)
Frame = -2 / -1
Query: 297 FLPTPQPHHSSCCPSLNXXXXXXXXXXXXXWRSAGGAWAS*CRSCAPCTTGCAPCGSSTW 118
F P PQ HHSSCCPSL+ WRS GGAWAS*CRSCAPCTTG APCGS TW
Sbjct: 239 FTPLPQAHHSSCCPSLSTSSSSET*GPSPWWRSGGGAWAS*CRSCAPCTTGYAPCGSLTW 60
Query: 117 PS 112
PS
Sbjct: 59 PS 54
>gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 352
Score = 118 bits (253), Expect = 5e-026
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = +3 / +1
Query: 114 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 85 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 225
Score = 114 bits (244), Expect = 8e-025
Identities = 45/52 (86%), Positives = 47/52 (90%)
Frame = -1 / -3
Query: 250 EYLRFLRNLGSIPLVEVCRWRLGFLMPFLCALYDWLCAVWFFDLAISSGSRS 95
EYL+FLRN GSIPLVEV RWRLGFLMPFLCALYDWLCAVWFFDLAI + S S
Sbjct: 221 EYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCS 66
Score = 111 bits (236), Expect = 1e-023
Identities = 42/59 (71%), Positives = 43/59 (72%)
Frame = -2 / -1
Query: 291 PTPQPHHSSCCPSLNXXXXXXXXXXXXXWRSAGGAWAS*CRSCAPCTTGCAPCGSSTWP 115
P PQPHHSSCCPSL+ WRS GGAWAS*CRSCAPCTTG APCGSSTWP
Sbjct: 262 PLPQPHHSSCCPSLSTSSSSETSGPSPWWRSGGGAWAS*CRSCAPCTTGYAPCGSSTWP 86
Score = 101 bits (215), Expect = 8e-021
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +2 / +3
Query: 110 RDGQVEEPHGAQPVVQGAQERHQEAQAPPADLHQGDGPQVPEEPEVFK 253
R+GQVEEPHGA PVVQGAQERHQEAQAPP DLHQGDGP+V EE EV K
Sbjct: 81 RNGQVEEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLK 224
>gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_H03_A011 5', mRNA sequence
Length = 448
Score = 118 bits (253), Expect = 5e-026
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = +3 / +1
Query: 114 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 64 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 204
Score = 116 bits (248), Expect = 2e-025
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = -1 / -3
Query: 250 EYLRFLRNLGSIPLVEVCRWRLGFLMPFLCALYDWLCAVWFFDLAISSGSRS 95
EYL+FLRNLGSIPLVEV RWRLGFLMPFLCALYDWLCAVWFFDLAI + S S
Sbjct: 200 EYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCS 45
Score = 110 bits (235), Expect = 1e-023
Identities = 43/62 (69%), Positives = 44/62 (70%)
Frame = -2 / -1
Query: 297 FLPTPQPHHSSCCPSLNXXXXXXXXXXXXXWRSAGGAWAS*CRSCAPCTTGCAPCGSSTW 118
F P PQPHHSSCCPSL+ WRS GGAWAS*CRSCAPCTTG APCGS TW
Sbjct: 247 FTPLPQPHHSSCCPSLSTSSSSET*GPSPWWRSGGGAWAS*CRSCAPCTTGYAPCGSLTW 68
Query: 117 PS 112
PS
Sbjct: 67 PS 62
>gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_C05_A010 3', mRNA sequence
Length = 426
Score = 118 bits (253), Expect = 5e-026
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = +3 / +1
Query: 114 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 64 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 204
Score = 116 bits (248), Expect = 2e-025
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = -1 / -2
Query: 250 EYLRFLRNLGSIPLVEVCRWRLGFLMPFLCALYDWLCAVWFFDLAISSGSRS 95
EYL+FLRNLGSIPLVEV RWRLGFLMPFLCALYDWLCAVWFFDLAI + S S
Sbjct: 200 EYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCS 45
Score = 110 bits (235), Expect = 1e-023
Identities = 43/62 (69%), Positives = 44/62 (70%)
Frame = -2 / -3
Query: 297 FLPTPQPHHSSCCPSLNXXXXXXXXXXXXXWRSAGGAWAS*CRSCAPCTTGCAPCGSSTW 118
F P PQPHHSSCCPSL+ WRS GGAWAS*CRSCAPCTTG APCGS TW
Sbjct: 247 FTPLPQPHHSSCCPSLSTSSSSET*GPSPWWRSGGGAWAS*CRSCAPCTTGYAPCGSLTW 68
Query: 117 PS 112
PS
Sbjct: 67 PS 62
>gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 116 bits (249), Expect = 2e-025
Identities = 46/47 (97%), Positives = 46/47 (97%)
Frame = +3 / +1
Query: 114 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
MAKSKNHT HNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 85 MAKSKNHTVHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 225
Score = 112 bits (240), Expect = 3e-024
Identities = 44/52 (84%), Positives = 46/52 (88%)
Frame = -1 / -3
Query: 250 EYLRFLRNLGSIPLVEVCRWRLGFLMPFLCALYDWLCAVWFFDLAISSGSRS 95
EYL+FLRN GSIPLVEV RWRLGFLMPFLCALYDWLC VWFFDLAI + S S
Sbjct: 221 EYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALYDWLCTVWFFDLAIPNPSCS 66
Score = 111 bits (236), Expect = 1e-023
Identities = 42/59 (71%), Positives = 43/59 (72%)
Frame = -2 / -1
Query: 291 PTPQPHHSSCCPSLNXXXXXXXXXXXXXWRSAGGAWAS*CRSCAPCTTGCAPCGSSTWP 115
P PQPHHSSCCPSL+ WRS GGAWAS*CRSCAPCTTG APCGSSTWP
Sbjct: 262 PLPQPHHSSCCPSLSTSSSSETSGPSPWWRSGGGAWAS*CRSCAPCTTGYAPCGSSTWP 86
Score = 101 bits (215), Expect = 8e-021
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +2 / +3
Query: 110 RDGQVEEPHGAQPVVQGAQERHQEAQAPPADLHQGDGPQVPEEPEVFK 253
R+GQVEEPHGA PVVQGAQERHQEAQAPP DLHQGDGP+V EE EV K
Sbjct: 81 RNGQVEEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLK 224
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 588,499,548
Number of Sequences: 832831
Number of extensions: 7772569
Number of successful extensions: 153205
Number of sequences better than 1.0e-020: 8
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 13998642021
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)