TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.680
(461 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG488301.1|BG488301 RHIZ2_61_H08.b1_A003 Rhizome2 (RHIZ2... 148 4e-035
gb|CD429771.1|CD429771 ETH1_15_F09.g1_A002 Ethylene-treated... 148 4e-035
gb|CD462841.1|CD462841 ETH1_40_C12.g2_A002 Ethylene-treated... 148 4e-035
gb|CN140003.1|CN140003 OX1_33_A06.g1_A002 Oxidatively-stres... 147 8e-035
gb|CN134367.1|CN134367 OX1_26_A06.b1_A002 Oxidatively-stres... 143 1e-033
gb|CX607004.1|CX607004 ANR1_6_D08.b1_A002 Anaerobic roots S... 141 3e-033
gb|BF588045.1|BF588045 FM1_37_A09.b1_A003 Floral-Induced Me... 141 7e-033
gb|CF484164.1|CF484164 POL1_3_C06.g1_A002 Pollen Sorghum bi... 141 7e-033
gb|AW285949.2|AW285949 LG1_255_C11.b1_A002 Light Grown 1 (L... 141 7e-033
gb|CN124659.1|CN124659 RHOH1_6_D09.b1_A002 Acid- and alkali... 135 3e-031
gb|CN139920.1|CN139920 OX1_33_A07.b1_A002 Oxidatively-stres... 135 3e-031
gb|CN139919.1|CN139919 OX1_33_A06.b1_A002 Oxidatively-stres... 134 6e-031
gb|BQ656170.1|BQ656170 pRC1191 Sorghum halepense rhizome cD... 133 1e-030
gb|CX616025.1|CX616025 GABR1_25_H11.b1_A002 GA- or brassino... 128 4e-029
gb|CX616116.1|CX616116 GABR1_25_H11.g1_A002 GA- or brassino... 128 4e-029
gb|CX609876.1|CX609876 ANR1_15_F10.b1_A002 Anaerobic roots ... 126 6e-029
gb|CN130096.1|CN130096 RHOH1_39_F08.b1_A002 Acid- and alkal... 127 7e-029
gb|CN130175.1|CN130175 RHOH1_39_F08.g1_A002 Acid- and alkal... 127 7e-029
gb|CF480057.1|CF480057 POL1_63_B03.g1_A002 Pollen Sorghum b... 126 3e-028
gb|CN130256.1|CN130256 RHOH1_40_F09.b1_A002 Acid- and alkal... 124 3e-028
gb|BE601008.1|BE601008 PI1_95_G08.b1_A002 Pathogen induced ... 125 4e-028
gb|CD428339.1|CD428339 ETH1_31_C11.b1_A002 Ethylene-treated... 123 2e-027
gb|CN131244.1|CN131244 RHOH1_46_F06.g1_A002 Acid- and alkal... 98 3e-027
gb|CF485874.1|CF485874 POL1_34_F04.b1_A002 Pollen Sorghum b... 119 6e-027
gb|CX617340.1|CX617340 GABR1_33_D12.b1_A002 GA- or brassino... 118 4e-026
gb|CW215010.1|CW215010 104_647_11194316_148_37463_078 Sorgh... 97 3e-025
gb|CD233971.1|CD233971 SS1_5_A05.g1_A012 Salt-stressed seed... 114 7e-025
gb|CN129658.1|CN129658 RHOH1_36_D10.g1_A002 Acid- and alkal... 110 2e-023
gb|CX606837.1|CX606837 ANR1_5_F02.b1_A002 Anaerobic roots S... 110 2e-023
gb|CX610883.1|CX610883 ANR1_21_H06.b1_A002 Anaerobic roots ... 102 4e-021
>gb|BG488301.1|BG488301 RHIZ2_61_H08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 563
Score = 148 bits (318), Expect = 4e-035
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +3
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG
Sbjct: 174 YSLDYARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 353
Query: 261 LY 256
LY
Sbjct: 354 LY 359
Score = 127 bits (273), Expect = 7e-029
Identities = 48/65 (73%), Positives = 54/65 (83%)
Frame = -2 / +2
Query: 442 VLPGLRENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSW 263
VLPGL ++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WYCWALPWI HLLCWNH L W
Sbjct: 173 VLPGLCQDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYCWALPWIQHLLCWNHRLPW 352
Query: 262 SVHHA 248
V A
Sbjct: 353 FVLRA 367
Score = 116 bits (249), Expect = 1e-025
Identities = 47/62 (75%), Positives = 51/62 (82%)
Frame = +3 / -3
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTLFSRSPG 437
T+H K+*FQH+RC*IHGKAQQYHQ *VSCGRH Q H* A+HLLPWQP H PTL SPG
Sbjct: 357 TNHGKR*FQHKRC*IHGKAQQYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTLSWHSPG 178
Query: 438 ST 443
ST
Sbjct: 177 ST 172
Score = 115 bits (245), Expect = 5e-025
Identities = 48/63 (76%), Positives = 54/63 (85%)
Frame = +1 / -1
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPCSRVV 432
+VQTT+N+DSNT DV+STVKPSNTIR ECLAVDI K IELP TSSLGSL +I QPC +V
Sbjct: 362 EVQTTVNDDSNTRDVESTVKPSNTIRFECLAVDIHKTIELPITSSLGSLGVIGQPCPGIV 183
Query: 433 QGV 441
QGV
Sbjct: 182 QGV 174
Score = 105 bits (224), Expect = 4e-022
Identities = 48/63 (76%), Positives = 50/63 (79%)
Frame = -1 / +1
Query: 440 TPWTTREQGWLMMRRLPREEVKGSSMGLSMSTARHSSLMVLLGFTVDLTSPVLESLFIVV 261
TPWT QGW M RLPREEV G+SM L MSTARHS+LMVLLGFTVD TS VLES F VV
Sbjct: 175 TPWTMPGQGWPMTPRLPREEVIGNSMVLWMSTARHSNLMVLLGFTVDSTSLVLESSFTVV 354
Query: 260 CTS 252
CTS
Sbjct: 355 CTS 363
>gb|CD429771.1|CD429771 ETH1_15_F09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_15_F09_A002 5', mRNA sequence
Length = 741
Score = 148 bits (318), Expect = 4e-035
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +3
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG
Sbjct: 75 YSLDYARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 254
Query: 261 LY 256
LY
Sbjct: 255 LY 260
Score = 124 bits (266), Expect = 7e-028
Identities = 48/65 (73%), Positives = 54/65 (83%)
Frame = -2 / +2
Query: 442 VLPGLRENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSW 263
VLPGL ++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W
Sbjct: 74 VLPGLCQDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPW 253
Query: 262 SVHHA 248
V A
Sbjct: 254 FVLRA 268
Score = 115 bits (245), Expect = 5e-025
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +3 / -1
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTLFSRSPG 437
T+H K+*FQH+RC*IHGKAQ+YHQ *VSCGRH Q H* A+HLLPWQP H PTL SPG
Sbjct: 258 TNHGKR*FQHKRC*IHGKAQRYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTLSWHSPG 79
Query: 438 ST 443
ST
Sbjct: 78 ST 73
Score = 114 bits (244), Expect = 7e-025
Identities = 48/63 (76%), Positives = 54/63 (85%)
Frame = +1 / -2
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPCSRVV 432
+VQTT+N+DSNT DVKSTVKPS+TIR ECLAVDI K IELP TSSLGSL +I QPC +V
Sbjct: 263 EVQTTVNDDSNTRDVKSTVKPSDTIRFECLAVDIHKTIELPITSSLGSLGVIGQPCPGIV 84
Query: 433 QGV 441
QGV
Sbjct: 83 QGV 75
Score = 105 bits (224), Expect = 4e-022
Identities = 48/63 (76%), Positives = 50/63 (79%)
Frame = -1 / +1
Query: 440 TPWTTREQGWLMMRRLPREEVKGSSMGLSMSTARHSSLMVLLGFTVDLTSPVLESLFIVV 261
TPWT QGW M RLPREEV G+SM L MSTARHS+LMV LGFTVDLTS VLES F VV
Sbjct: 76 TPWTMPGQGWPMTPRLPREEVIGNSMVLWMSTARHSNLMVSLGFTVDLTSLVLESSFTVV 255
Query: 260 CTS 252
CTS
Sbjct: 256 CTS 264
>gb|CD462841.1|CD462841 ETH1_40_C12.g2_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_40_C12_A002 5', mRNA sequence
Length = 702
Score = 148 bits (318), Expect = 4e-035
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -3 / +2
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG
Sbjct: 428 YSLDYARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 607
Query: 261 LY 256
LY
Sbjct: 608 LY 613
Score = 124 bits (266), Expect = 7e-028
Identities = 48/65 (73%), Positives = 54/65 (83%)
Frame = -2 / +1
Query: 442 VLPGLRENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSW 263
VLPGL ++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W
Sbjct: 427 VLPGLCQDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPW 606
Query: 262 SVHHA 248
V A
Sbjct: 607 FVLRA 621
Score = 115 bits (245), Expect = 5e-025
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +3 / -2
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTLFSRSPG 437
T+H K+*FQH+RC*IHGKAQ+YHQ *VSCGRH Q H* A+HLLPWQP H PTL SPG
Sbjct: 611 TNHGKR*FQHKRC*IHGKAQRYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTLSWHSPG 432
Query: 438 ST 443
ST
Sbjct: 431 ST 426
Score = 114 bits (244), Expect = 7e-025
Identities = 48/63 (76%), Positives = 54/63 (85%)
Frame = +1 / -3
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPCSRVV 432
+VQTT+N+DSNT DVKSTVKPS+TIR ECLAVDI K IELP TSSLGSL +I QPC +V
Sbjct: 616 EVQTTVNDDSNTRDVKSTVKPSDTIRFECLAVDIHKTIELPITSSLGSLGVIGQPCPGIV 437
Query: 433 QGV 441
QGV
Sbjct: 436 QGV 428
Score = 105 bits (224), Expect = 4e-022
Identities = 48/63 (76%), Positives = 50/63 (79%)
Frame = -1 / +3
Query: 440 TPWTTREQGWLMMRRLPREEVKGSSMGLSMSTARHSSLMVLLGFTVDLTSPVLESLFIVV 261
TPWT QGW M RLPREEV G+SM L MSTARHS+LMV LGFTVDLTS VLES F VV
Sbjct: 429 TPWTMPGQGWPMTPRLPREEVIGNSMVLWMSTARHSNLMVSLGFTVDLTSLVLESSFTVV 608
Query: 260 CTS 252
CTS
Sbjct: 609 CTS 617
>gb|CN140003.1|CN140003 OX1_33_A06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_A06_A002 5', mRNA sequence
Length = 741
Score = 147 bits (316), Expect = 8e-035
Identities = 60/62 (96%), Positives = 62/62 (100%)
Frame = -3 / +1
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG
Sbjct: 496 YSLDYARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 675
Query: 261 LY 256
+Y
Sbjct: 676 MY 681
Score = 128 bits (274), Expect = 5e-029
Identities = 49/65 (75%), Positives = 55/65 (84%)
Frame = -2 / +3
Query: 442 VLPGLRENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSW 263
VLPGLR++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W
Sbjct: 495 VLPGLRQDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPW 674
Query: 262 SVHHA 248
V A
Sbjct: 675 YVLRA 689
Score = 115 bits (246), Expect = 4e-025
Identities = 47/62 (75%), Positives = 51/62 (82%)
Frame = +3 / -3
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTLFSRSPG 437
T H K+*FQH+RC*IHGKAQ+YHQ *VSCGRH Q H* A+HLLPWQP H PTL RSPG
Sbjct: 679 TYHGKR*FQHKRC*IHGKAQRYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTLSWRSPG 500
Query: 438 ST 443
ST
Sbjct: 499 ST 494
Score = 112 bits (240), Expect = 3e-024
Identities = 48/63 (76%), Positives = 53/63 (84%)
Frame = +1 / -1
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPCSRVV 432
+V TT+N+DSNT DVKSTVKPS+TIR ECLAVDI K IELP TSSLGSL +I QPC VV
Sbjct: 684 EVHTTVNDDSNTRDVKSTVKPSDTIRFECLAVDIHKTIELPITSSLGSLGVIGQPCPGVV 505
Query: 433 QGV 441
QGV
Sbjct: 504 QGV 496
Score = 108 bits (230), Expect = 6e-023
Identities = 49/63 (77%), Positives = 51/63 (80%)
Frame = -1 / +2
Query: 440 TPWTTREQGWLMMRRLPREEVKGSSMGLSMSTARHSSLMVLLGFTVDLTSPVLESLFIVV 261
TPWTT QGW M RLPREEV G+SM L MSTARHS+LMV LGFTVDLTS VLES F VV
Sbjct: 497 TPWTTPGQGWPMTPRLPREEVIGNSMVLWMSTARHSNLMVSLGFTVDLTSLVLESSFTVV 676
Query: 260 CTS 252
CTS
Sbjct: 677 CTS 685
>gb|CN134367.1|CN134367 OX1_26_A06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_A06_A002 3', mRNA sequence
Length = 836
Score = 143 bits (307), Expect = 1e-033
Identities = 59/60 (98%), Positives = 60/60 (100%)
Frame = -3 / +2
Query: 435 LDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
LDYARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 2 LDYARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 181
Score = 121 bits (258), Expect = 8e-027
Identities = 46/63 (73%), Positives = 52/63 (82%)
Frame = -2 / +1
Query: 436 PGLRENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSV 257
PGL ++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W V
Sbjct: 1 PGLCQDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPWFV 180
Query: 256 HHA 248
A
Sbjct: 181 LRA 189
Score = 110 bits (234), Expect = 2e-023
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1 / -2
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPCSRVV 432
+VQTT+N+DSNT DVKSTVKPS+TIR ECLAVDI K IELP TSSLGSL +I QPC +V
Sbjct: 184 EVQTTVNDDSNTRDVKSTVKPSDTIRFECLAVDIHKTIELPITSSLGSLGVIGQPCPGIV 5
Query: 433 Q 435
Q
Sbjct: 4 Q 2
Score = 108 bits (230), Expect = 6e-023
Identities = 43/59 (72%), Positives = 48/59 (81%)
Frame = +3 / -1
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTLFSRSP 434
T+H K+*FQH+RC*IHGKAQ+YHQ *VSCGRH Q H* A+HLLPWQP H PTL SP
Sbjct: 179 TNHGKR*FQHKRC*IHGKAQRYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTLSWHSP 3
>gb|CX607004.1|CX607004 ANR1_6_D08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_D08_A002 3', mRNA sequence
Length = 786
Score = 141 bits (302), Expect(2) = 3e-033
Identities = 59/62 (95%), Positives = 59/62 (95%)
Frame = -3 / +1
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLANDAKAAK GGERQFNGLVDVYRKTL SDGI GLYRGFNISCVGIIVYRG
Sbjct: 10 YSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGIRGLYRGFNISCVGIIVYRG 189
Query: 261 LY 256
LY
Sbjct: 190 LY 195
Score = 22.6 bits (43), Expect(2) = 3e-033
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -3 / +3
Query: 60 WVWWNLSTVWFD 25
WVWW L + D
Sbjct: 525 WVWWRLRIYYDD 560
>gb|BF588045.1|BF588045 FM1_37_A09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 562
Score = 141 bits (302), Expect = 7e-033
Identities = 59/62 (95%), Positives = 59/62 (95%)
Frame = -3 / +3
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLANDAKAAK GGERQFNGLVDVYRKTL SDGI GLYRGFNISCVGIIVYRG
Sbjct: 345 YSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGIRGLYRGFNISCVGIIVYRG 524
Query: 261 LY 256
LY
Sbjct: 525 LY 530
>gb|CF484164.1|CF484164 POL1_3_C06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_C06_A002 5', mRNA sequence
Length = 600
Score = 141 bits (302), Expect = 7e-033
Identities = 59/62 (95%), Positives = 59/62 (95%)
Frame = -3 / +3
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLANDAKAAK GGERQFNGLVDVYRKTL SDGI GLYRGFNISCVGIIVYRG
Sbjct: 393 YSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGIRGLYRGFNISCVGIIVYRG 572
Query: 261 LY 256
LY
Sbjct: 573 LY 578
>gb|AW285949.2|AW285949 LG1_255_C11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 420
Score = 141 bits (302), Expect = 7e-033
Identities = 59/62 (95%), Positives = 59/62 (95%)
Frame = -3 / +3
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLANDAKAAK GGERQFNGLVDVYRKTL SDGI GLYRGFNISCVGIIVYRG
Sbjct: 168 YSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGIRGLYRGFNISCVGIIVYRG 347
Query: 261 LY 256
LY
Sbjct: 348 LY 353
>gb|CN124659.1|CN124659 RHOH1_6_D09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_6_D09_A002 3', mRNA sequence
Length = 829
Score = 135 bits (290), Expect = 3e-031
Identities = 56/57 (98%), Positives = 57/57 (100%)
Frame = -3 / +3
Query: 426 ARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
ARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 3 ARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 173
Score = 114 bits (244), Expect = 7e-025
Identities = 43/59 (72%), Positives = 49/59 (83%)
Frame = -2 / +2
Query: 424 ENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSVHHA 248
++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W V A
Sbjct: 5 QDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPWFVLRA 181
Score = 105 bits (225), Expect = 3e-022
Identities = 44/56 (78%), Positives = 49/56 (87%)
Frame = +1 / -3
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPC 420
+VQTT+N+DSNT DVKSTVKPS+TIR ECLAVDI K IELP TSSLGSL +I QPC
Sbjct: 176 EVQTTVNDDSNTRDVKSTVKPSDTIRFECLAVDIHKTIELPITSSLGSLGVIGQPC 9
Score = 105 bits (224), Expect = 4e-022
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +3 / -2
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTL 419
T+H K+*FQH+RC*IHGKAQ+YHQ *VSCGRH Q H* A+HLLPWQP H PTL
Sbjct: 171 TNHGKR*FQHKRC*IHGKAQRYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTL 10
>gb|CN139920.1|CN139920 OX1_33_A07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_A07_A002 3', mRNA sequence
Length = 827
Score = 135 bits (290), Expect = 3e-031
Identities = 56/57 (98%), Positives = 57/57 (100%)
Frame = -3 / +1
Query: 426 ARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
ARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 1 ARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 171
Score = 114 bits (244), Expect = 7e-025
Identities = 43/59 (72%), Positives = 49/59 (83%)
Frame = -2 / +3
Query: 424 ENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSVHHA 248
++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W V A
Sbjct: 3 QDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPWFVLRA 179
Score = 105 bits (225), Expect = 3e-022
Identities = 44/56 (78%), Positives = 49/56 (87%)
Frame = +1 / -3
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPC 420
+VQTT+N+DSNT DVKSTVKPS+TIR ECLAVDI K IELP TSSLGSL +I QPC
Sbjct: 174 EVQTTVNDDSNTRDVKSTVKPSDTIRFECLAVDIHKTIELPITSSLGSLGVIGQPC 7
Score = 105 bits (224), Expect = 4e-022
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +3 / -2
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTL 419
T+H K+*FQH+RC*IHGKAQ+YHQ *VSCGRH Q H* A+HLLPWQP H PTL
Sbjct: 169 TNHGKR*FQHKRC*IHGKAQRYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTL 8
>gb|CN139919.1|CN139919 OX1_33_A06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_A06_A002 3', mRNA sequence
Length = 829
Score = 134 bits (288), Expect = 6e-031
Identities = 55/57 (96%), Positives = 57/57 (100%)
Frame = -3 / +3
Query: 426 ARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
ARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG+Y
Sbjct: 3 ARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGMY 173
Score = 116 bits (249), Expect = 1e-025
Identities = 44/60 (73%), Positives = 50/60 (83%)
Frame = -2 / +2
Query: 427 RENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSVHHA 248
R++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W V A
Sbjct: 2 RQDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPWYVLRA 181
Score = 103 bits (220), Expect = 1e-021
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = +3 / -2
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTL 419
T H K+*FQH+RC*IHGKAQ+YHQ *VSCGRH Q H* A+HLLPWQP H PTL
Sbjct: 171 TYHGKR*FQHKRC*IHGKAQRYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTL 10
Score = 103 bits (220), Expect = 1e-021
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / -3
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPC 420
+V TT+N+DSNT DVKSTVKPS+TIR ECLAVDI K IELP TSSLGSL +I QPC
Sbjct: 176 EVHTTVNDDSNTRDVKSTVKPSDTIRFECLAVDIHKTIELPITSSLGSLGVIGQPC 9
>gb|BQ656170.1|BQ656170 pRC1191 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1191, mRNA sequence
Length = 1012
Score = 133 bits (286), Expect = 1e-030
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = -3 / +2
Query: 423 RTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
RTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 2 RTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 169
Score = 117 bits (250), Expect = 1e-025
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -2 / +1
Query: 424 ENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSVHHA 248
++KVG * +GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L WSV A
Sbjct: 1 QDKVGQ*RQGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPWSVLRA 177
Score = 107 bits (229), Expect = 8e-023
Identities = 42/54 (77%), Positives = 46/54 (85%)
Frame = +3 / -3
Query: 258 TDHDKQ*FQHRRC*IHGKAQQYHQT*VSCGRHRQAH*TAFHLLPWQPSHH*PTL 419
TDH K+*FQH+RC*IHGKAQ+YHQ *VSCGRH Q H* A+HLLPWQP H PTL
Sbjct: 167 TDHGKR*FQHKRC*IHGKAQRYHQI*VSCGRHPQDH*IAYHLLPWQPWRHWPTL 6
Score = 105 bits (225), Expect = 3e-022
Identities = 44/56 (78%), Positives = 49/56 (87%)
Frame = +1 / -1
Query: 253 DVQTTINNDSNTGDVKSTVKPSNTIRLECLAVDIDKPIELPFTSSLGSLRIISQPC 420
+VQTT+N+DSNT DVKSTVKPS+TIR ECLAVDI K IELP TSSLGSL +I QPC
Sbjct: 172 EVQTTVNDDSNTRDVKSTVKPSDTIRFECLAVDIHKTIELPITSSLGSLGVIGQPC 5
>gb|CX616025.1|CX616025 GABR1_25_H11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_25_H11_A002 3', mRNA sequence
Length = 733
Score = 128 bits (275), Expect = 4e-029
Identities = 52/62 (83%), Positives = 57/62 (91%)
Frame = -3 / +1
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLAND K+AK GG RQFNGL+DVY+KTL +DG+AGLYRGF ISCVGIIVYRG
Sbjct: 142 YSLDYARTRLANDNKSAKKGGTRQFNGLIDVYKKTLATDGVAGLYRGFVISCVGIIVYRG 321
Query: 261 LY 256
LY
Sbjct: 322 LY 327
>gb|CX616116.1|CX616116 GABR1_25_H11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_25_H11_A002 5', mRNA sequence
Length = 693
Score = 128 bits (275), Expect = 4e-029
Identities = 52/62 (83%), Positives = 57/62 (91%)
Frame = -3 / +1
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRLAND K+AK GG RQFNGL+DVY+KTL +DG+AGLYRGF ISCVGIIVYRG
Sbjct: 418 YSLDYARTRLANDNKSAKKGGTRQFNGLIDVYKKTLATDGVAGLYRGFVISCVGIIVYRG 597
Query: 261 LY 256
LY
Sbjct: 598 LY 603
>gb|CX609876.1|CX609876 ANR1_15_F10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_F10_A002 3', mRNA sequence
Length = 805
Score = 126 bits (270), Expect(2) = 6e-029
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = -3 / +1
Query: 423 RTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
RTRLANDAKAAK GGERQFNGLVDVYRKTL SDGI GLYRGFNISCVGIIVYRGLY
Sbjct: 1 RTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGIRGLYRGFNISCVGIIVYRGLY 168
Score = 22.6 bits (43), Expect(2) = 6e-029
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -3 / +3
Query: 60 WVWWNLSTVWFD 25
WVWW L + D
Sbjct: 498 WVWWRLRIYYDD 533
>gb|CN130096.1|CN130096 RHOH1_39_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_39_F08_A002 3', mRNA sequence
Length = 881
Score = 127 bits (273), Expect = 7e-029
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = -3 / +3
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRL ND K+AK GG++QFNGL+D Y+KTLKSDGI GLYRGF ISCVGII+YRG
Sbjct: 249 YSLDYARTRLTNDNKSAKNGGQKQFNGLIDCYKKTLKSDGIVGLYRGFVISCVGIIIYRG 428
Query: 261 LY 256
LY
Sbjct: 429 LY 434
>gb|CN130175.1|CN130175 RHOH1_39_F08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_39_F08_A002 5', mRNA sequence
Length = 757
Score = 127 bits (273), Expect = 7e-029
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = -3 / +1
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRG 262
YSLDYARTRL ND K+AK GG++QFNGL+D Y+KTLKSDGI GLYRGF ISCVGII+YRG
Sbjct: 400 YSLDYARTRLTNDNKSAKNGGQKQFNGLIDCYKKTLKSDGIVGLYRGFVISCVGIIIYRG 579
Query: 261 LY 256
LY
Sbjct: 580 LY 585
>gb|CF480057.1|CF480057 POL1_63_B03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_63_B03_A002 5', mRNA sequence
Length = 710
Score = 126 bits (269), Expect = 3e-028
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = -3 / +3
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGII 274
YSLDYARTRLANDAKAAK GGERQFNGLVDVYRKTL SDGI GLYRGFNISCVGII
Sbjct: 543 YSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGIRGLYRGFNISCVGII 710
>gb|CN130256.1|CN130256 RHOH1_40_F09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F09_A002 3', mRNA sequence
Length = 828
Score = 124 bits (265), Expect(2) = 3e-028
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = -3 / +3
Query: 420 TRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
TRLANDAKAAK GGERQFNGLVDVYRKTL SDGI GLYRGFNISCVGIIVYRGLY
Sbjct: 3 TRLANDAKAAKKGGERQFNGLVDVYRKTLASDGIRGLYRGFNISCVGIIVYRGLY 167
Score = 22.6 bits (43), Expect(2) = 3e-028
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -3 / +2
Query: 60 WVWWNLSTVWFD 25
WVWW L + D
Sbjct: 497 WVWWRLRIYYDD 532
>gb|BE601008.1|BE601008 PI1_95_G08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 362
Score = 125 bits (268), Expect = 4e-028
Identities = 51/54 (94%), Positives = 52/54 (96%)
Frame = -3 / +1
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVG 280
YSLDYARTRLANDAKAAKGGG+RQFNGLVDVYRKTLKSDGI GLYRGFNI CVG
Sbjct: 199 YSLDYARTRLANDAKAAKGGGDRQFNGLVDVYRKTLKSDGIGGLYRGFNICCVG 360
Score = 113 bits (241), Expect = 2e-024
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = -2 / +3
Query: 442 VLPGLRENKVG**CEGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWN 278
VLPGL ++KVG * +GCQGRR* A+QW+C CLP+DTQ+*WY WALPWI*HLLCWN
Sbjct: 198 VLPGLCQDKVGQ*RQGCQGRR**AIQWSCGCLPEDTQI*WYRWALPWI*HLLCWN 362
>gb|CD428339.1|CD428339 ETH1_31_C11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_31_C11_A002 3', mRNA sequence
Length = 809
Score = 123 bits (263), Expect = 2e-027
Identities = 50/51 (98%), Positives = 51/51 (100%)
Frame = -3 / +2
Query: 408 NDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
NDAKAAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 2 NDAKAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 154
Score = 109 bits (232), Expect = 3e-023
Identities = 39/51 (76%), Positives = 43/51 (84%)
Frame = -2 / +1
Query: 400 EGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSVHHA 248
+GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W V A
Sbjct: 10 QGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPWFVLRA 162
>gb|CN131244.1|CN131244 RHOH1_46_F06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_F06_A002 5', mRNA sequence
Length = 666
Score = 98.2 bits (208), Expect(2) = 3e-027
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = -3 / +1
Query: 396 AAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
AAKGGG+RQFNGLVDVYRKT+ SDGIAGLYRGF S VGIIVYRGLY
Sbjct: 490 AAKGGGDRQFNGLVDVYRKTIASDGIAGLYRGFVPSVVGIIVYRGLY 630
Score = 44.1 bits (90), Expect(2) = 3e-027
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -3 / +1
Query: 441 YSLDYARTRLANDAKAAKGGG 379
YSLDYARTRLANDAK+A GG
Sbjct: 442 YSLDYARTRLANDAKSAAKGG 504
>gb|CF485874.1|CF485874 POL1_34_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_F04_A002 3', mRNA sequence
Length = 739
Score = 119 bits (255), Expect(2) = 6e-027
Identities = 50/53 (94%), Positives = 50/53 (94%)
Frame = -3 / +2
Query: 414 LANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
LANDAKAAK GGERQFNGLVDVYRKTL SDGI GLYRGFNISCVGIIVYRGLY
Sbjct: 2 LANDAKAAKKGGERQFNGLVDVYRKTLASDGIRGLYRGFNISCVGIIVYRGLY 160
Score = 22.6 bits (43), Expect(2) = 6e-027
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -3 / +1
Query: 60 WVWWNLSTVWFD 25
WVWW L + D
Sbjct: 490 WVWWRLRIYYDD 525
>gb|CX617340.1|CX617340 GABR1_33_D12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_D12_A002 3', mRNA sequence
Length = 806
Score = 118 bits (253), Expect = 4e-026
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = -3 / +1
Query: 405 DAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
DAKAAKGGG+R+FNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 1 DAKAAKGGGDRRFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 150
Score = 109 bits (232), Expect = 3e-023
Identities = 39/51 (76%), Positives = 43/51 (84%)
Frame = -2 / +3
Query: 400 EGCQGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSVHHA 248
+GCQGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W V A
Sbjct: 6 QGCQGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPWFVLRA 158
>gb|CW215010.1|CW215010 104_647_11194316_148_37463_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194316, DNA
sequence
Length = 687
Score = 97.3 bits (206), Expect(2) = 3e-025
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -3 / -2
Query: 402 AKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
A A GGERQF GLVDVYRKTL+SDG+AGLYRGFN+S VGI+VYRGLY
Sbjct: 548 AAAMGKGGERQFTGLVDVYRKTLRSDGVAGLYRGFNVSVVGIVVYRGLY 402
Score = 38.2 bits (77), Expect(2) = 3e-025
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -3 / -2
Query: 441 YSLDYARTRLANDAKAAKGGGE 376
YSLDYARTRL ND KAA G+
Sbjct: 596 YSLDYARTRLTNDYKAAAAMGK 531
>gb|CD233971.1|CD233971 SS1_5_A05.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_5_A05_A012 5', mRNA sequence
Length = 657
Score = 114 bits (244), Expect = 7e-025
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = -3 / +2
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRGFN 295
YSLDYARTRLANDA AAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFN
Sbjct: 509 YSLDYARTRLANDAXAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFN 655
>gb|CN129658.1|CN129658 RHOH1_36_D10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_D10_A002 5', mRNA sequence
Length = 770
Score = 110 bits (234), Expect = 2e-023
Identities = 45/47 (95%), Positives = 47/47 (100%)
Frame = -3 / +3
Query: 441 YSLDYARTRLANDAKAAKGGGERQFNGLVDVYRKTLKSDGIAGLYRG 301
YSLDYARTRLANDA+AAKGGG+RQFNGLVDVYRKTLKSDGIAGLYRG
Sbjct: 630 YSLDYARTRLANDAQAAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRG 770
>gb|CX606837.1|CX606837 ANR1_5_F02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_F02_A002 3', mRNA sequence
Length = 844
Score = 110 bits (234), Expect = 2e-023
Identities = 44/45 (97%), Positives = 45/45 (100%)
Frame = -3 / +2
Query: 390 KGGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
KGGG+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 2 KGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 136
Score = 101 bits (215), Expect = 7e-021
Identities = 37/48 (77%), Positives = 40/48 (83%)
Frame = -2 / +1
Query: 391 QGRR*KAVQWACRCLPQDTQV*WYCWALPWI*HLLCWNHCLSWSVHHA 248
QGRR* A+QW+C CLPQDTQ+*WY WALPWI*HLLCWNH L W V A
Sbjct: 1 QGRR**AIQWSCGCLPQDTQI*WYRWALPWI*HLLCWNHRLPWFVLRA 144
>gb|CX610883.1|CX610883 ANR1_21_H06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_21_H06_A002 3', mRNA sequence
Length = 795
Score = 102 bits (217), Expect = 4e-021
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = -3 / +2
Query: 381 GERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 256
G+RQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY
Sbjct: 2 GDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLY 127
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 678,839,367
Number of Sequences: 832831
Number of extensions: 10959665
Number of successful extensions: 190002
Number of sequences better than 1.0e-020: 33
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 12168413744
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)