TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG465638.1|BG465638 RHIZ2_46_H10.b1_A003 Rhizome2 (RHIZ2... 125 2e-048
gb|BG241764.1|BG241764 RHIZ2_50_H08.b1_A003 Rhizome2 (RHIZ2... 125 2e-048
gb|CD228647.1|CD228647 CCC1_8_F12.g1_A007 Callus culture/ce... 124 3e-048
gb|BM322658.1|BM322658 PIC1_7_E05.b1_A002 Pathogen-infected... 133 3e-046
gb|BG050225.1|BG050225 FM1_68_B12.b1_A003 Floral-Induced Me... 122 2e-045
gb|BG487738.1|BG487738 FM1_73_F09.b1_A003 Floral-Induced Me... 125 8e-044
gb|CX611747.1|CX611747 ANR1_26_B01.g1_A002 Anaerobic roots ... 130 6e-043
gb|BI076241.1|BI076241 IP1_27_F09.b1_A002 Immature pannicle... 166 5e-042
gb|CL155712.1|CL155712 104_342_10782352_116_31474_064 Sorgh... 167 1e-040
gb|CW138948.1|CW138948 104_528_11134971_116_34890_002 Sorgh... 167 1e-040
gb|BG947964.1|BG947964 IP1_7_F09.b1_A002 Immature pannicle ... 157 1e-038
gb|CW270701.1|CW270701 104_742_11402580_116_35333_040 Sorgh... 100 2e-038
gb|BF421002.1|BF421002 FM1_5_A09.b1_A003 Floral-Induced Mer... 83 7e-036
gb|BF421012.1|BF421012 FM1_5_B09.b1_A003 Floral-Induced Mer... 83 7e-036
gb|BM324104.1|BM324104 PIC1_24_C04.b1_A002 Pathogen-infecte... 114 8e-035
gb|CW424123.1|CW424123 fsbb001f134e21f0 Sorghum methylation... 72 8e-035
gb|CW156783.1|CW156783 104_559_11146874_116_36378_001 Sorgh... 65 1e-032
gb|BF587099.1|BF587099 FM1_32_B11.b1_A003 Floral-Induced Me... 132 1e-030
gb|CW138949.1|CW138949 104_528_11134971_148_34894_002 Sorgh... 130 1e-029
gb|CD205027.1|CD205027 HS1_11_D08.g1_A012 Heat-shocked seed... 81 2e-029
gb|BI211411.1|BI211411 IP1_60_D09.b1_A002 Immature pannicle... 128 5e-029
gb|CN137037.1|CN137037 OX1_54_G02.g1_A002 Oxidatively-stres... 80 4e-025
gb|CW179382.1|CW179382 104_593_11160070_148_36628_087 Sorgh... 62 2e-023
gb|BI351598.1|BI351598 IP1_72_H09.b1_A002 Immature pannicle... 80 5e-023
gb|CW324268.1|CW324268 104_818_11477066_116_35905_003 Sorgh... 67 1e-022
gb|CW357901.1|CW357901 fsbb001f024m03k0 Sorghum methylation... 67 1e-022
gb|BE595359.1|BE595359 PI1_53_B08.b1_A002 Pathogen induced ... 73 8e-022
gb|CW344307.1|CW344307 104_846_11487885_116_36193_081 Sorgh... 73 2e-021
gb|CW131204.1|CW131204 104_514_11115545_148_34790_079 Sorgh... 62 2e-020
gb|CW344308.1|CW344308 104_846_11487885_148_36194_081 Sorgh... 73 3e-020
gb|CW073953.1|CW073953 104_342_10782352_114_31473_064 Sorgh... 99 5e-020
gb|CL184250.1|CL184250 104_397_10898729_116_32364_073 Sorgh... 67 6e-020
gb|BG462949.1|BG462949 EM1_46_F07.b1_A002 Embryo 1 (EM1) So... 99 7e-020
gb|BG557835.1|BG557835 EM1_55_A02.b1_A002 Embryo 1 (EM1) So... 99 7e-020
gb|CW460606.1|CW460606 fsbb001f207o02k0 Sorghum methylation... 66 1e-019
gb|CL161335.1|CL161335 104_352_10805647_114_31826_319 Sorgh... 62 4e-019
gb|CW032344.1|CW032344 104_261_10501323_114_30363 Sorghum m... 62 4e-018
gb|BE360363.1|BE360363 DG1_63_C02.b1_A002 Dark Grown 1 (DG1... 73 9e-018
gb|BZ625803.1|BZ625803 ih40h10.g1 WGS-SbicolorF (DH5a methy... 64 3e-017
gb|CW249019.1|CW249019 104_710_11222618_148_35036_005 Sorgh... 64 4e-017
gb|CW180574.1|CW180574 104_595_11163021_148_36645_093 Sorgh... 67 6e-017
gb|CW359388.1|CW359388 fsbb001f026p23f0 Sorghum methylation... 67 7e-017
gb|CL161336.1|CL161336 104_352_10805647_116_31827_319 Sorgh... 61 8e-016
gb|CW324269.1|CW324269 104_818_11477066_148_35909_003 Sorgh... 61 8e-016
gb|CW464276.1|CW464276 fsbb001f213g22f0 Sorghum methylation... 61 8e-016
gb|CW164439.1|CW164439 104_572_11151990_116_36464_023 Sorgh... 62 5e-015
gb|CW255156.1|CW255156 104_719_11226074_148_35129_005 Sorgh... 67 2e-014
gb|CW321806.1|CW321806 104_815_11475751_116_35947_026 Sorgh... 51 1e-013
gb|CW097409.1|CW097409 104_463_11002440_148_34357_088 Sorgh... 73 3e-012
gb|CW156784.1|CW156784 104_559_11146874_148_36377_001 Sorgh... 73 3e-012
gb|CW434526.1|CW434526 fsbb001f150e08k0 Sorghum methylation... 62 6e-012
gb|CW434793.1|CW434793 fsbb001f150k14k0 Sorghum methylation... 62 8e-012
gb|CW255155.1|CW255155 104_719_11226074_116_35125_005 Sorgh... 62 9e-012
gb|CW053221.1|CW053221 104_293_10515842_115_30191 Sorghum m... 48 2e-010
gb|CD213826.1|CD213826 HS1_53_D07.g1_A012 Heat-shocked seed... 64 5e-010
gb|CW249018.1|CW249018 104_710_11222618_116_35040_005 Sorgh... 66 6e-010
gb|CW435955.1|CW435955 fsbb001f152f15k0 Sorghum methylation... 65 8e-010
gb|CW460605.1|CW460605 fsbb001f207o02f0 Sorghum methylation... 64 1e-009
gb|CW290801.1|CW290801 104_770_11413210_148_35562_043 Sorgh... 61 1e-008
gb|BZ627648.1|BZ627648 ih54a08.g1 WGS-SbicolorF (DH5a methy... 60 4e-008
gb|CW097408.1|CW097408 104_463_11002440_116_34345_088 Sorgh... 35 7e-006
gb|BE125108.1|BE125108 DG1_16_F11.b1_A002 Dark Grown 1 (DG1... 52 8e-006
gb|CW032345.1|CW032345 104_261_10501323_115_30364 Sorghum m... 48 1e-004
gb|CW164440.1|CW164440 104_572_11151990_148_36463_023 Sorgh... 48 1e-004
gb|CW497111.1|CW497111 fsbb001f289k23f0 Sorghum methylation... 29 4e-004
gb|CW435954.1|CW435954 fsbb001f152f15f0 Sorghum methylation... 44 0.002
gb|CL184249.1|CL184249 104_397_10898729_114_32380_073 Sorgh... 43 0.005
gb|CW078918.1|CW078918 104_397_10898729_114_32360_073 Sorgh... 43 0.005
gb|CW147899.1|CW147899 104_542_11140132_116_35001_010 Sorgh... 43 0.005
gb|CL165855.1|CL165855 104_361_10808954_116_31821_170 Sorgh... 42 0.006
gb|BZ627647.1|BZ627647 ih54a08.b1 WGS-SbicolorF (DH5a methy... 42 0.009
gb|CW488731.1|CW488731 fsbb001f265e17k0 Sorghum methylation... 38 0.11
gb|BF585645.1|BF585645 FM1_23_H04.b1_A003 Floral-Induced Me... 37 0.28
gb|CN129891.1|CN129891 RHOH1_38_C05.b1_A002 Acid- and alkal... 36 0.39
gb|CL170042.1|CL170042 104_370_10813487_148_31788_191 Sorgh... 35 1.0
gb|CW128908.1|CW128908 104_510_11114273_116_34756_067 Sorgh... 35 1.0
gb|CW456334.1|CW456334 fsbb001f201k01k0 Sorghum methylation... 35 1.4
gb|CL177206.1|CL177206 104_384_10893678_116_31916_126 Sorgh... 34 1.9
gb|BZ626819.1|BZ626819 ih48e10.b1 WGS-SbicolorF (DH5a methy... 34 2.6
gb|BZ331206.1|BZ331206 hw07a08.g1 WGS-SbicolorF (JM107 adap... 33 3.6
gb|BZ331343.1|BZ331343 hw07h11.g1 WGS-SbicolorF (JM107 adap... 33 3.6
gb|CW256237.1|CW256237 104_721_11226680_116_35139_028 Sorgh... 33 3.6
gb|CW256238.1|CW256238 104_721_11226680_148_35143_028 Sorgh... 33 3.6
gb|CW350420.1|CW350420 fsbb001f011l14f0 Sorghum methylation... 33 3.6
gb|CW391358.1|CW391358 fsbb001f077h10f0 Sorghum methylation... 33 3.6
gb|CW401140.1|CW401140 fsbb001f091m20k0 Sorghum methylation... 33 3.6
gb|CW495230.1|CW495230 fsbb001f286o11f0 Sorghum methylation... 33 3.6
gb|CW104675.1|CW104675 104_473_11012557_116_34442_049 Sorgh... 33 4.9
gb|CW125049.1|CW125049 104_505_11112122_116_34716_013 Sorgh... 33 4.9
gb|CW262491.1|CW262491 104_730_11230099_116_35223_078 Sorgh... 33 4.9
gb|CW303439.1|CW303439 104_788_11465239_148_35695_032 Sorgh... 25 5.5
gb|CW413415.1|CW413415 fsbb001f112i20k0 Sorghum methylation... 25 5.5
gb|BZ329532.1|BZ329532 hv86e02.g1 WGS-SbicolorF (JM107 adap... 32 6.8
gb|CL149597.1|CL149597 104_330_10777933_114_31353_253 Sorgh... 32 6.8
gb|CL149598.1|CL149598 104_330_10777933_116_31354_253 Sorgh... 32 6.8
gb|CW489665.1|CW489665 fsbb001f274l14k0 Sorghum methylation... 32 6.8
gb|CD227282.1|CD227282 CCC1_50_G02.b1_A007 Callus culture/c... 32 6.8
gb|CF486359.1|CF486359 POL1_37_F05.b1_A002 Pollen Sorghum b... 28 8.2
gb|CW137197.1|CW137197 104_523_11119163_116_34868_040 Sorgh... 32 9.3
gb|CW137198.1|CW137198 104_523_11119163_148_34864_040 Sorgh... 32 9.3
gb|CW275332.1|CW275332 104_748_11404907_116_35378_038 Sorgh... 32 9.3
gb|CW433400.1|CW433400 fsbb001f148j13k0 Sorghum methylation... 32 9.3
gb|CN148689.1|CN148689 WOUND1_58_E03.b1_A002 Wounded leaves... 32 9.3
gb|CW198652.1|CW198652 104_623_11183088_116_36848_090 Sorgh... 24 9.9
gb|CW238450.1|CW238450 104_695_11216737_148_37524_009 Sorgh... 24 10.0
>gb|BG465638.1|BG465638 RHIZ2_46_H10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 543
Score = 125 bits (267), Expect(3) = 2e-048
Identities = 48/66 (72%), Positives = 54/66 (81%)
Frame = +2 / +1
Query: 71 GSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCES 250
GS NYYMY GGTNF RTAGGP TSYDYDAPIDEYG++R+PK HLK+LH A+KLCE
Sbjct: 16 GSFINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVREPKHSHLKELHRAVKLCEQ 195
Query: 251 ALTAVD 268
AL +VD
Sbjct: 196 ALVSVD 213
Score = 81.3 bits (171), Expect(3) = 2e-048
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A VG QTS
Sbjct: 274 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVGVQTS 426
Score = 70.3 bits (147), Expect(2) = 1e-017
Identities = 38/66 (57%), Positives = 42/66 (63%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
ST +A S +L A S + G L PYSSIGAS*S*LV+ GPPAVR K VPP YM*
Sbjct: 212 STETKACSHNLTALWSSLR*LCFGSLTSPYSSIGAS*S*LVVMKGPPAVRPKFVPP*YM* 33
Query: 87 *FCKLP 70
* K P
Sbjct: 32 *LIKEP 15
Score = 44.6 bits (91), Expect(2) = 4e-005
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = -3 / -1
Query: 259 SKS*FTKFNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
++S T NS + F+M L S +IF+NW IIIIA + T S +I S+ IHV+I
Sbjct: 204 NQSLLT*LNSSVEFFKMTVLWFSNKSIFINWSIIIIACCDEGTPSSAPEICSSMIHVVI 28
Score = 43.2 bits (88), Expect = 0.003
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1 / +3
Query: 82 KLLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
+LLHV W N+F A W S N L*L*C+N* IW
Sbjct: 27 QLLHVSWRNKFRAHCWGSLHHNKL*L*CSN**IW 128
Score = 41.4 bits (84), Expect(2) = 1e-017
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -2
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL 439
DV PT+A+LK T QSG ML D GGRL
Sbjct: 425 DV*TPTVALLKTTFLQSGRMLIDQGGRL 342
Score = 40.9 bits (83), Expect = 0.016
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2 / -3
Query: 197 VVLRYHIRQLVHHNHS*LSEVDHQLSAQNWFHQNTCNN 84
V+ + HI QL HHNHS L D Q A+N F +TC+N
Sbjct: 142 VL*QVHIHQLEHHNHSLL**RDPQQCARNLFLHDTCSN 29
Score = 25.8 bits (50), Expect(3) = 2e-048
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / +1
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHV+ S
Sbjct: 202 VSVDPAITTLGTMQEAHVFRS 264
Score = 24.4 bits (47), Expect(2) = 4e-005
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3 / -1
Query: 532 IEXRCLCTNPGCIKSHSFTVW*YAHRPWW 446
+ RCL TN G +K++ + A+ P W
Sbjct: 435 LHLRCLNTNCGTVKNYILAIRKDAN*PRW 349
>gb|BG241764.1|BG241764 RHIZ2_50_H08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 477
Score = 125 bits (267), Expect(3) = 2e-048
Identities = 48/66 (72%), Positives = 54/66 (81%)
Frame = +2 / +1
Query: 71 GSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCES 250
GS NYYMY GGTNF RTAGGP TSYDYDAPIDEYG++R+PK HLK+LH A+KLCE
Sbjct: 16 GSFINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVREPKHSHLKELHRAVKLCEQ 195
Query: 251 ALTAVD 268
AL +VD
Sbjct: 196 ALVSVD 213
Score = 81.3 bits (171), Expect(3) = 2e-048
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A VG QTS
Sbjct: 274 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVGVQTS 426
Score = 70.3 bits (147), Expect(2) = 1e-017
Identities = 38/66 (57%), Positives = 42/66 (63%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
ST +A S +L A S + G L PYSSIGAS*S*LV+ GPPAVR K VPP YM*
Sbjct: 212 STETKACSHNLTALWSSLR*LCFGSLTSPYSSIGAS*S*LVVMKGPPAVRPKFVPP*YM* 33
Query: 87 *FCKLP 70
* K P
Sbjct: 32 *LIKEP 15
Score = 44.6 bits (91), Expect(2) = 3e-005
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = -3 / -1
Query: 259 SKS*FTKFNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
++S T NS + F+M L S +IF+NW IIIIA + T S +I S+ IHV+I
Sbjct: 204 NQSLLT*LNSSVEFFKMTVLWFSNKSIFINWSIIIIACCDEGTPSSAPEICSSMIHVVI 28
Score = 43.2 bits (88), Expect = 0.003
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1 / +3
Query: 82 KLLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
+LLHV W N+F A W S N L*L*C+N* IW
Sbjct: 27 QLLHVSWRNKFRAHCWGSLHHNKL*L*CSN**IW 128
Score = 41.4 bits (84), Expect(2) = 1e-017
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -2
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL 439
DV PT+A+LK T QSG ML D GGRL
Sbjct: 425 DV*TPTVALLKTTFLQSGRMLIDQGGRL 342
Score = 40.9 bits (83), Expect = 0.016
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2 / -3
Query: 197 VVLRYHIRQLVHHNHS*LSEVDHQLSAQNWFHQNTCNN 84
V+ + HI QL HHNHS L D Q A+N F +TC+N
Sbjct: 142 VL*QVHIHQLEHHNHSLL**RDPQQCARNLFLHDTCSN 29
Score = 25.8 bits (50), Expect(3) = 2e-048
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / +1
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHV+ S
Sbjct: 202 VSVDPAITTLGTMQEAHVFRS 264
Score = 24.4 bits (47), Expect(2) = 3e-005
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3 / -1
Query: 532 IEXRCLCTNPGCIKSHSFTVW*YAHRPWW 446
+ RCL TN G +K++ + A+ P W
Sbjct: 435 LHLRCLNTNCGTVKNYILAIRKDAN*PRW 349
>gb|CD228647.1|CD228647 CCC1_8_F12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_F12_A007 5', mRNA sequence
Length = 616
Score = 124 bits (265), Expect(3) = 3e-048
Identities = 48/66 (72%), Positives = 53/66 (80%)
Frame = +2 / +3
Query: 71 GSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCES 250
GS NYYMY GGTNF RTAGGP TSYDYDAPIDEYG+ R+PK HLK+LH A+KLCE
Sbjct: 18 GSFINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLAREPKHSHLKELHRAVKLCEQ 197
Query: 251 ALTAVD 268
AL +VD
Sbjct: 198 ALVSVD 215
Score = 81.3 bits (171), Expect(3) = 3e-048
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +2 / +3
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A VG QTS
Sbjct: 276 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVGVQTS 428
Score = 70.3 bits (147), Expect(2) = 1e-017
Identities = 38/66 (57%), Positives = 42/66 (63%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
ST +A S +L A S + G L PYSSIGAS*S*LV+ GPPAVR K VPP YM*
Sbjct: 214 STETKACSHNLTALWSSLR*LCFGSLASPYSSIGAS*S*LVVMKGPPAVRPKFVPP*YM* 35
Query: 87 *FCKLP 70
* K P
Sbjct: 34 *LIKEP 17
Score = 44.6 bits (91), Expect(2) = 4e-005
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = -3 / -3
Query: 259 SKS*FTKFNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
++S T NS + F+M L S +IF+NW IIIIA + T S +I S+ IHV+I
Sbjct: 206 NQSLLT*LNSSVEFFKMTVLWFSSKSIFINWSIIIIACCDEGTPSSAPEICSSMIHVVI 30
Score = 43.2 bits (88), Expect = 0.003
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1 / +2
Query: 82 KLLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
+LLHV W N+F A W S N L*L*C+N* IW
Sbjct: 29 QLLHVSWRNKFRAHCWGSLHHNKL*L*CSN**IW 130
Score = 41.4 bits (84), Expect(2) = 1e-017
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -1
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL 439
DV PT+A+LK T QSG ML D GGRL
Sbjct: 427 DV*TPTVALLKTTFLQSGRMLIDQGGRL 344
Score = 40.9 bits (83), Expect = 0.016
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2 / -2
Query: 197 VVLRYHIRQLVHHNHS*LSEVDHQLSAQNWFHQNTCNN 84
V+ + HI QL HHNHS L D Q A+N F +TC+N
Sbjct: 144 VL*QVHIHQLEHHNHSLL**RDPQQCARNLFLHDTCSN 31
Score = 32.7 bits (65), Expect = 4.9
Identities = 21/48 (43%), Positives = 24/48 (50%)
Frame = +3 / +1
Query: 60 YQRGEAYKIITCILVEPILSGQLVVHFR*LAMIMMHQLTNMVS*DNLS 203
Y+R I TCI+ E I L V AMIMM QL NM +N S
Sbjct: 7 YKRVVLLSITTCIMEEQISGALLGVPSSQQAMIMMLQLMNMDLLENQS 150
Score = 25.8 bits (50), Expect(3) = 3e-048
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / +3
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHV+ S
Sbjct: 204 VSVDPAITTLGTMQEAHVFRS 266
Score = 24.4 bits (47), Expect(2) = 4e-005
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3 / -3
Query: 532 IEXRCLCTNPGCIKSHSFTVW*YAHRPWW 446
+ RCL TN G +K++ + A+ P W
Sbjct: 437 LHLRCLNTNCGTVKNYILAIRKDAN*PRW 351
>gb|BM322658.1|BM322658 PIC1_7_E05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 579
Score = 133 bits (286), Expect(2) = 3e-046
Identities = 50/78 (64%), Positives = 59/78 (75%)
Frame = +2 / +2
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F G+ QNYYMY GGTN +R++GGP TSYDYDAPIDEYG++R+PKWGHL+D
Sbjct: 134 FAVARFYQRGGTFQNYYMYHGGTNLDRSSGGPFIATSYDYDAPIDEYGLVREPKWGHLRD 313
Query: 221 LHAAIKLCESALTAVDGS 274
+H AIKLCE AL A D S
Sbjct: 314 VHKAIKLCEPALIATDPS 367
Score = 91.8 bits (194), Expect(2) = 2e-021
Identities = 43/66 (65%), Positives = 49/66 (74%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A+ A SQSL+A C S K PH G L PYSS+GAS*S*LV GPP +RS+LVPP YM*
Sbjct: 360 SVAMSAGSQSLMALCTSLKWPHFGSLTSPYSSMGAS*S*LVAMKGPPELRSRLVPP*YM* 181
Query: 87 *FCKLP 70
*F K+P
Sbjct: 180 *FWKVP 163
Score = 72.5 bits (152), Expect(2) = 3e-046
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +2 / +2
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y+S + ++ C+AFLANID +V G+ Y LP WSVSILPDC+ V N
Sbjct: 368 YTSLGQNAEAAVYKTGSVCAAFLANIDGQSDKTVTFNGRMYRLPAWSVSILPDCKNVVLN 547
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 548 TAQINSQVT 574
Score = 44.6 bits (91), Expect(2) = 3e-005
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAYK 83
G ++P+RP +D AFAVARFYQRG ++
Sbjct: 95 GGAVPYRPVEDLAFAVARFYQRGGTFQ 175
Score = 32.7 bits (65), Expect(2) = 2e-021
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1 / -1
Query: 501 AVLKATVSQSGSMLTDHGGRL 439
AVL T QSG MLTDH G L
Sbjct: 552 AVLSTTFLQSGRMLTDHAGSL 490
Score = 24.9 bits (48), Expect(2) = 3e-005
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1 / +1
Query: 427 WKIL*STTMVCEHTTRL*NCGF*YSQGWYTNIXF 528
W+ + + +VC+H + L CG *+S +++ F
Sbjct: 478 WENVQAPCVVCQHPS*LQECGA*HSTDQFSSDEF 579
>gb|BG050225.1|BG050225 FM1_68_B12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 466
Score = 122 bits (260), Expect(3) = 2e-045
Identities = 46/72 (63%), Positives = 52/72 (72%)
Frame = +2 / +1
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F GS+QNYY+Y GGTNF RT GGP TSYDYDAPIDEYG+ R PKW HL+D
Sbjct: 22 FAVARFFEKGGSVQNYYVYHGGTNFGRTTGGPFITTSYDYDAPIDEYGLRRFPKWAHLRD 201
Query: 221 LHAAIKLCESAL 256
LH +I+LCE L
Sbjct: 202 LHKSIRLCEHTL 237
Score = 74.8 bits (157), Expect(2) = 3e-017
Identities = 38/66 (57%), Positives = 43/66 (65%)
Frame = -1 / -3
Query: 255 RADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM**FCK 76
R S +L+ RS +C H G L PYSSIGAS*S*LV+ +GPP VR K VPP Y **F
Sbjct: 236 RVCSHNLMDL*RSLRCAHFGNLLRPYSSIGAS*S*LVVMNGPPVVRPKFVPP*YT**F*T 57
Query: 75 LPHVDK 58
LP K
Sbjct: 56 LPPFSK 39
Score = 71.6 bits (150), Expect(3) = 2e-045
Identities = 32/57 (56%), Positives = 35/57 (61%)
Frame = +2 / +1
Query: 353 SGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
S S C AFLANID V + Y LP WSVSILPDC V FNTA+V +QTS
Sbjct: 295 SDQSGGCVAFLANIDSANDKVVTFRNRQYDLPAWSVSILPDCRNVVFNTAKVQSQTS 465
Score = 59.3 bits (123), Expect = 5e-008
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -3 / -2
Query: 214 QMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVIIL*AS 71
QM PL S + IF+NWCII+IAS +W+ S KI +T IH++IL A+
Sbjct: 195 QMCPLWKSPEAIFINWCIIVIASCNEWSPSSATKICATMIHIVILNAA 52
Score = 46.9 bits (96), Expect(2) = 8e-007
Identities = 26/53 (49%), Positives = 31/53 (58%)
Frame = +3 / +2
Query: 57 FYQRGEAYKIITCILVEPILSGQLVVHFR*LAMIMMHQLTNMVS*DNLSGGI* 215
F ++ A++I CI+V IL L H LAM MMHQL NM S D SG I*
Sbjct: 38 FSRKVAAFRITMCIMVAQILVALLGDHSLQLAMTMMHQLMNMASGDFQSGHI* 196
Score = 45.1 bits (92), Expect = 0.001
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +1 / +3
Query: 79 TKLLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIWYLKTT*VGAFE 216
++LL V WW++F + W + N*L*L*CTN* IW + + VG E
Sbjct: 60 SELLCVSWWHKFWSHYWGTIHYN*L*L*CTN**IWPQEISKVGTSE 197
Score = 37.3 bits (75), Expect = 0.21
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = -2 / -1
Query: 215 SNAPT*VVLRYHIRQLVHHNHS*LSEVDHQLSAQNWFHQNTCNN 84
S+ PT + HI QLVHH+HS*L + Q QN H +T +N
Sbjct: 196 SDVPTLEIS*GHIHQLVHHSHS*L**MVPQ*CDQNLCHHDTHSN 65
Score = 34.1 bits (68), Expect(2) = 3e-017
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = -1 / -3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
T AVL T QSG +LTD GR + T L S+ AR A
Sbjct: 449 TFAVLNTTFLQSGRILTDQAGRSYCLLRKVTTLSLAESIFARNA 318
Score = 28.6 bits (56), Expect(3) = 2e-045
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2 / +1
Query: 257 TAVDGSPHYVKLGPMQEAHVYSSEN 331
T + G+ ++ LGP QEA +YS ++
Sbjct: 232 TLLYGNTTFLSLGPKQEADIYSDQS 306
Score = 26.7 bits (52), Expect(2) = 8e-007
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 30 QDSAFAVARFYQRG 71
+D AFAVARF+++G
Sbjct: 10 EDVAFAVARFFEKG 51
>gb|BG487738.1|BG487738 FM1_73_F09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 622
Score = 125 bits (268), Expect(2) = 8e-044
Identities = 46/65 (70%), Positives = 54/65 (83%)
Frame = +2 / +2
Query: 80 QNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALT 259
+NYYMY GGTN +R++GGP TSYDYDAPIDEYG+ R+PKWGHL+D+H AIKLCE AL
Sbjct: 8 ENYYMYHGGTNLDRSSGGPFIATSYDYDAPIDEYGLAREPKWGHLRDVHKAIKLCEPALI 187
Query: 260 AVDGS 274
A D S
Sbjct: 188 ATDPS 202
Score = 87.2 bits (184), Expect(2) = 5e-020
Identities = 41/62 (66%), Positives = 46/62 (74%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A+ A SQSL+A C S K PH G L PYSS+GAS*S*LV GPP +RS+LVPP YM*
Sbjct: 195 SVAMSAGSQSLMALCTSLKWPHFGSLASPYSSMGAS*S*LVAMKGPPELRSRLVPPWYM* 16
Query: 87 *F 82
*F
Sbjct: 15 *F 10
Score = 72.5 bits (152), Expect(2) = 8e-044
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +2 / +2
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y+S + ++ C+AFLANID +V G+ Y LP WSVSILPDC+ V N
Sbjct: 203 YTSLGQNAEAAVYKTGSVCAAFLANIDGQSDKTVTFNGRMYRLPAWSVSILPDCKNVVLN 382
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 383 TAQINSQVT 409
Score = 32.7 bits (65), Expect(2) = 5e-020
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1 / -2
Query: 501 AVLKATVSQSGSMLTDHGGRL 439
AVL T QSG MLTDH G L
Sbjct: 387 AVLSTTFLQSGRMLTDHAGSL 325
>gb|CX611747.1|CX611747 ANR1_26_B01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_B01_A002 5', mRNA sequence
Length = 829
Score = 130 bits (278), Expect(3) = 6e-043
Identities = 51/76 (67%), Positives = 56/76 (73%)
Frame = +2 / +3
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F+ GS NYYMY GGTNF+RT+GGP TSYDYDAPIDEYG+LRQPKWGHL D
Sbjct: 327 FAVARFIQKGGSFVNYYMYHGGTNFDRTSGGPFIATSYDYDAPIDEYGLLRQPKWGHLGD 506
Query: 221 LHAAIKLCESALTAVD 268
LH AIK E AL + D
Sbjct: 507 LHKAIKQAEPALVSGD 554
Score = 87.7 bits (185), Expect(3) = 6e-024
Identities = 43/66 (65%), Positives = 46/66 (69%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A S L+A CRS + PH GCL PYSSIGAS*S*LV +GPP VRSKLVPP YM*
Sbjct: 553 SPETSAGSACLMALCRSPR*PHFGCLSRPYSSIGAS*S*LVAMNGPPEVRSKLVPPWYM* 374
Query: 87 *FCKLP 70
* K P
Sbjct: 373 *LTKEP 356
Score = 64.3 bits (134), Expect(3) = 6e-043
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +2 / +3
Query: 359 NSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
+S C+AFL+N + A V G+ Y LP WS+S+LPDC T FNTA V + ++
Sbjct: 606 SSGACAAFLSNYHTNAAARVVFNGRRYDLPAWSISVLPDCRTAVFNTATVSSPSA 770
Score = 42.8 bits (87), Expect = 0.005
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++PHRP +D AFAVARF Q+G ++
Sbjct: 288 GGAVPHRPVEDMAFAVARFIQKGGSF 365
Score = 35.0 bits (70), Expect(3) = 6e-024
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = -1 / -1
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEA 409
T+AVL V QSGS L DH GR * P T A
Sbjct: 754 TVAVLNTAVLQSGSTLMDHAGRS*RRPLNTTRA 656
Score = 33.1 bits (66), Expect = 3.6
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -3 / -3
Query: 214 QMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
Q+ P RL T+FV+ I+I+A + +++G++ +HV++
Sbjct: 500 QVTPFRLPQQTVFVDRRIVIVAGGDERPAGGAVEVGASMVHVVV 369
Score = 29.0 bits (57), Expect(3) = 6e-024
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3 / -1
Query: 58 KRATAKALS*AGLCGNDSP 2
KRATAKA+S G CG P
Sbjct: 343 KRATAKAMSSTGRCGTAPP 287
Score = 21.7 bits (41), Expect(3) = 6e-043
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2 / +3
Query: 263 VDGSPHYVKLGPMQEAHVYSSEN 331
V G P +G ++A+VY S +
Sbjct: 543 VSGDPTIQTIGNYEKAYVYKSSS 611
>gb|BI076241.1|BI076241 IP1_27_F09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 575
Score = 166 bits (356), Expect = 4e-040
Identities = 66/76 (86%), Positives = 66/76 (86%)
Frame = +2 / +2
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F GS QNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD
Sbjct: 347 FAVARFYQRGGSFQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 526
Query: 221 LHAAIKLCESALTAVD 268
LHAAIKLCE ALTAVD
Sbjct: 527 LHAAIKLCEPALTAVD 574
Score = 140 bits (301), Expect = 1e-032
Identities = 59/77 (76%), Positives = 67/77 (87%)
Frame = -3 / -2
Query: 268 IYCSKS*FTKFNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHV 89
IYCSKS FT+FNSCM*VFQMPPLRL *DT+F++WCIIIIASYLKWTTSCPLKI STKIHV
Sbjct: 574 IYCSKSWFTQFNSCM*VFQMPPLRLP*DTVFIDWCIIIIASYLKWTTSCPLKICSTKIHV 395
Query: 88 IIL*ASPR**KRATAKA 38
I+L AS K + +K+
Sbjct: 394 IVLKASTTLIKTSNSKS 344
Score = 137 bits (294), Expect(2) = 2e-040
Identities = 62/66 (93%), Positives = 62/66 (93%)
Frame = -1 / -3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
STAVRA S SLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSK VPPKYM*
Sbjct: 573 STAVRAGSHSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKFVPPKYM* 394
Query: 87 *FCKLP 70
*F KLP
Sbjct: 393 *F*KLP 376
Score = 134 bits (287), Expect = 1e-030
Identities = 59/82 (71%), Positives = 65/82 (79%)
Frame = -2 / -1
Query: 269 HLLQ*ELIHKV**LHVGLSNAPT*VVLRYHIRQLVHHNHS*LSEVDHQLSAQNWFHQNTC 90
HLLQ*EL+H V**LHVGLSNAPT*V LRY I +LVHHNHS*LSEVDHQLSAQN FHQNTC
Sbjct: 575 HLLQ*ELVHTV**LHVGLSNAPT*VALRYRIHRLVHHNHS*LSEVDHQLSAQNLFHQNTC 396
Query: 89 NNFVSFPTLIKTSNSKSTVLSR 24
N+F SF + K + L +
Sbjct: 395 NSFESFHHVDKNEQQQKHYLEQ 330
Score = 133 bits (286), Expect(2) = 5e-042
Identities = 57/65 (87%), Positives = 60/65 (92%)
Frame = +1 / +1
Query: 73 KLTKLLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIWYLKTT*VGAFERPTCSY*TL*IS 252
KL+KLLHVFWWN+F*ADSWWSTSDN*L*L*CTN I YLK T*VGAFERPTCSY*T+* S
Sbjct: 379 KLSKLLHVFWWNKF*ADSWWSTSDN*L*L*CTNR*IRYLKAT*VGAFERPTCSY*TV*TS 558
Query: 253 SYCSR 267
SYCSR
Sbjct: 559 SYCSR 573
Score = 95.9 bits (203), Expect(2) = 5e-020
Identities = 44/51 (86%), Positives = 45/51 (88%)
Frame = +3 / +3
Query: 72 EAYKIITCILVEPILSGQLVVHFR*LAMIMMHQLTNMVS*DNLSGGI*KTY 224
EA+K ITCILVE ILSGQLVVHFR*LAMIMMHQ N VS* NLSGGI*KTY
Sbjct: 378 EAFKTITCILVEQILSGQLVVHFR*LAMIMMHQSMNTVS*GNLSGGI*KTY 530
Score = 58.3 bits (121), Expect(2) = 5e-042
Identities = 22/27 (81%), Positives = 26/27 (96%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAYK 83
GE+LPHRPAQDSAFAVARFYQRG +++
Sbjct: 308 GEALPHRPAQDSAFAVARFYQRGGSFQ 388
Score = 54.2 bits (112), Expect = 2e-006
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = +2 / +1
Query: 11 IAT*ACSRQCFCCCSFLSTWGSLQNYYMYFGGTNF 115
+AT*ACSR CFCCCSFLSTW L F F
Sbjct: 316 VAT*ACSR*CFCCCSFLSTWWKLSKLLHVFWWNKF 420
Score = 49.2 bits (101), Expect(2) = 2e-040
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 69 HVDKNEQQQKHCLEQAYVAMIRP 1
HVDKNEQQQKH LEQAYVA + P
Sbjct: 374 HVDKNEQQQKHYLEQAYVATLHP 306
Score = 48.3 bits (99), Expect = 1e-004
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = -3 / -3
Query: 70 PR**KRATAKALS*AGLCGNDSP 2
PR**KRATAKALS*AGLCGN SP
Sbjct: 375 PR**KRATAKALS*AGLCGNASP 307
Score = 47.3 bits (97), Expect = 2e-004
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -2 / -2
Query: 68 TLIKTSNSKSTVLSRPMWQ*F 6
TLIKTSNSKST+LSRPMWQ F
Sbjct: 373 TLIKTSNSKSTILSRPMWQRF 311
Score = 22.6 bits (43), Expect(2) = 5e-020
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = +1 / +3
Query: 1 GANHCHIGXXXXXXXXXXXFINVGKLTKLL 90
G CHIG FINV + K +
Sbjct: 306 GVKRCHIGLLKIVLLLLLVFINVVEAFKTI 395
>gb|CL155712.1|CL155712 104_342_10782352_116_31474_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782352, DNA
sequence
Length = 724
Score = 167 bits (359), Expect = 1e-040
Identities = 66/68 (97%), Positives = 68/68 (100%)
Frame = +2 / -2
Query: 305 EAHVYSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCET 484
+AHVYSSENVHTNGSISGN+QFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCET
Sbjct: 678 QAHVYSSENVHTNGSISGNAQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCET 499
Query: 485 VAFNTARV 508
VAFNTARV
Sbjct: 498 VAFNTARV 475
Score = 162 bits (349), Expect = 3e-039
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = -2 / +3
Query: 512 YQPWLY*KPQFHSLVVCSQTMVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCG 333
+ P LY*KPQFHSLVVCSQTMVVDYKIFQKS+LKHIYVHQCWQEKLSKTV+FLKCFHLCG
Sbjct: 471 HSPSLY*KPQFHSLVVCSQTMVVDYKIFQKSKLKHIYVHQCWQEKLSKTVHFLKCFHLCG 650
Query: 332 HFHWNTHVP 306
HFH N HVP
Sbjct: 651 HFHLNIHVP 677
Score = 159 bits (342), Expect = 3e-038
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -1 / +2
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNCEFPEMLPFVWTF 328
TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNC FPEMLPFVWTF
Sbjct: 476 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNCAFPEMLPFVWTF 655
Query: 327 SLEYTCA 307
SLEYTCA
Sbjct: 656 SLEYTCA 676
Score = 158 bits (340), Expect = 6e-038
Identities = 63/67 (94%), Positives = 66/67 (98%)
Frame = +1 / -1
Query: 307 GTCVFQ*KCPHKWKHFRKFTVLLSFSCQH**T*ICFSLDFWKIL*STTMVCEHTTRL*NC 486
GTC+F+*KCPHKWKHFRK TVLLSFSCQH**T*ICFSLDFWKIL*STTMVCEHTTRL*NC
Sbjct: 676 GTCIFK*KCPHKWKHFRKCTVLLSFSCQH**T*ICFSLDFWKIL*STTMVCEHTTRL*NC 497
Query: 487 GF*YSQG 507
GF*YS+G
Sbjct: 496 GF*YSEG 476
Score = 149 bits (320), Expect = 3e-035
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = -3 / +1
Query: 511 TNPGCIKSHSFTVW*YAHRPWW*TIRFSKNPD*SIFMFINVGKKS*AKL*IS*NASICVD 332
T+P CIKSHSFTVW*YAHRPWW*TIRFSKNP+*SIFMFINVGKKS*AKL IS*NASICVD
Sbjct: 472 THPRCIKSHSFTVW*YAHRPWW*TIRFSKNPN*SIFMFINVGKKS*AKLCIS*NASICVD 651
Query: 331 IFTGIHMCL 305
IFT I+MCL
Sbjct: 652 IFT*IYMCL 678
Score = 146 bits (314), Expect = 2e-034
Identities = 62/67 (92%), Positives = 63/67 (94%)
Frame = +3 / -3
Query: 306 RHMCIPVKMSTQMEAFQEIHSFAQLFLPTLMNINMLQSGFLENLIVYHHGL*AYYQTVKL 485
RHM I VKMSTQMEAFQE+HSFAQLFLPTLMNINMLQ GFLENLIVYHHGL*AYYQTVKL
Sbjct: 677 RHMYIQVKMSTQMEAFQEMHSFAQLFLPTLMNINMLQFGFLENLIVYHHGL*AYYQTVKL 498
Query: 486 WLLIQPG 506
WLLIQ G
Sbjct: 497 WLLIQRG 477
>gb|CW138948.1|CW138948 104_528_11134971_116_34890_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134971, DNA
sequence
Length = 610
Score = 167 bits (359), Expect = 1e-040
Identities = 66/68 (97%), Positives = 68/68 (100%)
Frame = +2 / -3
Query: 305 EAHVYSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCET 484
+AHVYSSENVHTNGSISGN+QFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCET
Sbjct: 275 QAHVYSSENVHTNGSISGNAQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCET 96
Query: 485 VAFNTARV 508
VAFNTARV
Sbjct: 95 VAFNTARV 72
Score = 162 bits (349), Expect = 3e-039
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = -2 / +2
Query: 512 YQPWLY*KPQFHSLVVCSQTMVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCG 333
+ P LY*KPQFHSLVVCSQTMVVDYKIFQKS+LKHIYVHQCWQEKLSKTV+FLKCFHLCG
Sbjct: 68 HSPSLY*KPQFHSLVVCSQTMVVDYKIFQKSKLKHIYVHQCWQEKLSKTVHFLKCFHLCG 247
Query: 332 HFHWNTHVP 306
HFH N HVP
Sbjct: 248 HFHLNIHVP 274
Score = 159 bits (342), Expect = 3e-038
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = -1 / +1
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNCEFPEMLPFVWTF 328
TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNC FPEMLPFVWTF
Sbjct: 73 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNCAFPEMLPFVWTF 252
Query: 327 SLEYTCA 307
SLEYTCA
Sbjct: 253 SLEYTCA 273
Score = 158 bits (340), Expect = 6e-038
Identities = 63/67 (94%), Positives = 66/67 (98%)
Frame = +1 / -2
Query: 307 GTCVFQ*KCPHKWKHFRKFTVLLSFSCQH**T*ICFSLDFWKIL*STTMVCEHTTRL*NC 486
GTC+F+*KCPHKWKHFRK TVLLSFSCQH**T*ICFSLDFWKIL*STTMVCEHTTRL*NC
Sbjct: 273 GTCIFK*KCPHKWKHFRKCTVLLSFSCQH**T*ICFSLDFWKIL*STTMVCEHTTRL*NC 94
Query: 487 GF*YSQG 507
GF*YS+G
Sbjct: 93 GF*YSEG 73
Score = 149 bits (320), Expect = 3e-035
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = -3 / +3
Query: 511 TNPGCIKSHSFTVW*YAHRPWW*TIRFSKNPD*SIFMFINVGKKS*AKL*IS*NASICVD 332
T+P CIKSHSFTVW*YAHRPWW*TIRFSKNP+*SIFMFINVGKKS*AKL IS*NASICVD
Sbjct: 69 THPRCIKSHSFTVW*YAHRPWW*TIRFSKNPN*SIFMFINVGKKS*AKLCIS*NASICVD 248
Query: 331 IFTGIHMCL 305
IFT I+MCL
Sbjct: 249 IFT*IYMCL 275
Score = 146 bits (314), Expect = 2e-034
Identities = 62/67 (92%), Positives = 63/67 (94%)
Frame = +3 / -1
Query: 306 RHMCIPVKMSTQMEAFQEIHSFAQLFLPTLMNINMLQSGFLENLIVYHHGL*AYYQTVKL 485
RHM I VKMSTQMEAFQE+HSFAQLFLPTLMNINMLQ GFLENLIVYHHGL*AYYQTVKL
Sbjct: 274 RHMYIQVKMSTQMEAFQEMHSFAQLFLPTLMNINMLQFGFLENLIVYHHGL*AYYQTVKL 95
Query: 486 WLLIQPG 506
WLLIQ G
Sbjct: 94 WLLIQRG 74
>gb|BG947964.1|BG947964 IP1_7_F09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 562
Score = 157 bits (337), Expect = 1e-037
Identities = 62/72 (86%), Positives = 62/72 (86%)
Frame = +2 / +2
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F GS QNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD
Sbjct: 347 FAVARFYQRGGSFQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 526
Query: 221 LHAAIKLCESAL 256
LHAAIKLCE AL
Sbjct: 527 LHAAIKLCEPAL 562
Score = 129 bits (277), Expect = 3e-029
Identities = 55/73 (75%), Positives = 63/73 (86%)
Frame = -3 / -1
Query: 256 KS*FTKFNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVIIL* 77
KS FT+FNSCM*VFQMPPLRL *DT+F++WCIIIIASYLKWTTSCPLKI STKIHVI+L
Sbjct: 562 KSWFTQFNSCM*VFQMPPLRLP*DTVFIDWCIIIIASYLKWTTSCPLKICSTKIHVIVLK 383
Query: 76 ASPR**KRATAKA 38
AS K + +K+
Sbjct: 382 ASTTLIKTSNSKS 344
Score = 129 bits (277), Expect(2) = 5e-038
Identities = 58/62 (93%), Positives = 58/62 (93%)
Frame = -1 / -2
Query: 255 RADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM**FCK 76
RA S SLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSK VPPKYM**F K
Sbjct: 561 RAGSHSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKFVPPKYM**F*K 382
Query: 75 LP 70
LP
Sbjct: 381 LP 376
Score = 124 bits (265), Expect = 1e-027
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = -2 / -3
Query: 254 ELIHKV**LHVGLSNAPT*VVLRYHIRQLVHHNHS*LSEVDHQLSAQNWFHQNTCNNFVS 75
EL+H V**LHVGLSNAPT*V LRY I +LVHHNHS*LSEVDHQLSAQN FHQNTCN+F S
Sbjct: 560 ELVHTV**LHVGLSNAPT*VALRYRIHRLVHHNHS*LSEVDHQLSAQNLFHQNTCNSFES 381
Query: 74 FPTLIKTSNSKSTVLSR 24
F + K + L +
Sbjct: 380 FHHVDKNEQQQKHYLEQ 330
Score = 122 bits (261), Expect(2) = 1e-038
Identities = 53/61 (86%), Positives = 56/61 (91%)
Frame = +1 / +1
Query: 73 KLTKLLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIWYLKTT*VGAFERPTCSY*TL*IS 252
KL+KLLHVFWWN+F*ADSWWSTSDN*L*L*CTN I YLK T*VGAFERPTCSY*T+* S
Sbjct: 379 KLSKLLHVFWWNKF*ADSWWSTSDN*L*L*CTNR*IRYLKAT*VGAFERPTCSY*TV*TS 558
Query: 253 S 255
S
Sbjct: 559 S 561
Score = 95.9 bits (203), Expect(2) = 5e-020
Identities = 44/51 (86%), Positives = 45/51 (88%)
Frame = +3 / +3
Query: 72 EAYKIITCILVEPILSGQLVVHFR*LAMIMMHQLTNMVS*DNLSGGI*KTY 224
EA+K ITCILVE ILSGQLVVHFR*LAMIMMHQ N VS* NLSGGI*KTY
Sbjct: 378 EAFKTITCILVEQILSGQLVVHFR*LAMIMMHQSMNTVS*GNLSGGI*KTY 530
Score = 58.3 bits (121), Expect(2) = 1e-038
Identities = 22/27 (81%), Positives = 26/27 (96%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAYK 83
GE+LPHRPAQDSAFAVARFYQRG +++
Sbjct: 308 GEALPHRPAQDSAFAVARFYQRGGSFQ 388
Score = 54.2 bits (112), Expect = 2e-006
Identities = 21/35 (60%), Positives = 22/35 (62%)
Frame = +2 / +1
Query: 11 IAT*ACSRQCFCCCSFLSTWGSLQNYYMYFGGTNF 115
+AT*ACSR CFCCCSFLSTW L F F
Sbjct: 316 VAT*ACSR*CFCCCSFLSTWWKLSKLLHVFWWNKF 420
Score = 49.2 bits (101), Expect(2) = 5e-038
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / -3
Query: 69 HVDKNEQQQKHCLEQAYVAMIRP 1
HVDKNEQQQKH LEQAYVA + P
Sbjct: 374 HVDKNEQQQKHYLEQAYVATLHP 306
Score = 48.3 bits (99), Expect = 1e-004
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = -3 / -2
Query: 70 PR**KRATAKALS*AGLCGNDSP 2
PR**KRATAKALS*AGLCGN SP
Sbjct: 375 PR**KRATAKALS*AGLCGNASP 307
Score = 47.3 bits (97), Expect = 2e-004
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -2 / -1
Query: 68 TLIKTSNSKSTVLSRPMWQ*F 6
TLIKTSNSKST+LSRPMWQ F
Sbjct: 373 TLIKTSNSKSTILSRPMWQRF 311
Score = 22.6 bits (43), Expect(2) = 5e-020
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = +1 / +3
Query: 1 GANHCHIGXXXXXXXXXXXFINVGKLTKLL 90
G CHIG FINV + K +
Sbjct: 306 GVKRCHIGLLKIVLLLLLVFINVVEAFKTI 395
>gb|CW270701.1|CW270701 104_742_11402580_116_35333_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402580, DNA
sequence
Length = 650
Score = 100 bits (213), Expect(2) = 2e-038
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +2 / +1
Query: 182 GILRQPKWGHLKDLHAAIKLCESALTAVDGSPHYVKLGPMQE 307
GILRQPKWGHLKDLHAAIKLCE ALTAVDGSP Y+KLGPMQE
Sbjct: 238 GILRQPKWGHLKDLHAAIKLCEPALTAVDGSPRYIKLGPMQE 363
Score = 94.1 bits (199), Expect(2) = 1e-033
Identities = 39/45 (86%), Positives = 39/45 (86%)
Frame = -1 / -1
Query: 306 SCMGPNFT**GEPSTAVRADSQSLIAACRSFKCPHLGCLKIPYSS 172
SCMGPNF * GEPSTAVRA S SLIAACRSFKCPHLGCLKIP S
Sbjct: 362 SCMGPNFI*RGEPSTAVRAGSHSLIAACRSFKCPHLGCLKIPEHS 228
Score = 86.3 bits (182), Expect(2) = 1e-030
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = -3 / -3
Query: 307 LLHGP*FYIMR*TIYCSKS*FTKFNSCM*VFQMPPLRLS*DT 182
LLHGP*FYI R* IYCSKS FT+FNSCM*VFQMPPLRL *DT
Sbjct: 363 LLHGP*FYITR*AIYCSKSWFTQFNSCM*VFQMPPLRLP*DT 238
Score = 85.8 bits (181), Expect(2) = 4e-030
Identities = 36/43 (83%), Positives = 38/43 (88%)
Frame = +1 / +3
Query: 184 YLKTT*VGAFERPTCSY*TL*ISSYCSRWFTSLCKIRAHAGGT 312
YLK T*VGAFERPTCSY*T+* SSYCSRW TSL KIRAHA G+
Sbjct: 240 YLKAT*VGAFERPTCSY*TV*TSSYCSRWLTSLYKIRAHARGS 368
Score = 84.5 bits (178), Expect(2) = 1e-029
Identities = 37/46 (80%), Positives = 41/46 (89%)
Frame = -2 / -2
Query: 320 NTHVPPAWALILHNEVNHLLQ*ELIHKV**LHVGLSNAPT*VVLRY 183
N + P AWALIL+NEV+HLLQ*EL+H V**LHVGLSNAPT*V LRY
Sbjct: 376 NQYEPLAWALILYNEVSHLLQ*ELVHTV**LHVGLSNAPT*VALRY 239
Score = 79.9 bits (168), Expect(2) = 2e-038
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2 / +2
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYGI 187
YFGGTNFERTAGGPLQITSYDYDAPIDEYG+
Sbjct: 80 YFGGTNFERTAGGPLQITSYDYDAPIDEYGM 172
Score = 70.3 bits (147), Expect(2) = 1e-033
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = -3 / -2
Query: 184 TIFVNWCIIIIASYLKWTTSCPLKIGSTKI 95
T+F++WCIIIIASYLKWTTSCPLKI STKI
Sbjct: 169 TVFIDWCIIIIASYLKWTTSCPLKICSTKI 80
Score = 68.0 bits (142), Expect(2) = 1e-030
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = -2 / -1
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
Y I +LVHHNHS*LSEVDHQLSAQN FHQNT
Sbjct: 170 YRIHRLVHHNHS*LSEVDHQLSAQNLFHQNT 78
Score = 66.6 bits (139), Expect(2) = 1e-029
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = -1 / -3
Query: 186 IPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
IPYSSIGAS*S*LVI*SGPPAVRSK VPPKY
Sbjct: 171 IPYSSIGAS*S*LVI*SGPPAVRSKFVPPKY 79
Score = 66.6 bits (139), Expect(2) = 4e-030
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +1 / +1
Query: 94 VFWWNQF*ADSWWSTSDN*L*L*CTN*RIWYL 189
VFWWN+F*ADSWWSTSDN*L*L*CTN I Y+
Sbjct: 79 VFWWNKF*ADSWWSTSDN*L*L*CTNR*IRYV 174
Score = 60.2 bits (125), Expect(3) = 1e-014
Identities = 28/40 (70%), Positives = 29/40 (72%)
Frame = +3 / +3
Query: 66 RGEAYKIITCILVEPILSGQLVVHFR*LAMIMMHQLTNMV 185
R E + ILVE ILSGQLVVHFR*LAMIMMHQ N V
Sbjct: 51 RSECTSFLCSILVEQILSGQLVVHFR*LAMIMMHQSMNTV 170
Score = 28.6 bits (56), Expect(3) = 1e-014
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3 / +2
Query: 273 HLIM*N*GPCRRHMCI 320
HL++*N*GPC+R + I
Sbjct: 329 HLVI*N*GPCKRFVLI 376
Score = 28.6 bits (56), Expect(3) = 1e-014
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 183 VS*DNLSGGI*KTY 224
VS* NLSGGI*KTY
Sbjct: 239 VS*GNLSGGI*KTY 280
>gb|BF421002.1|BF421002 FM1_5_A09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 537
Score = 82.6 bits (174), Expect(3) = 7e-036
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2 / +2
Query: 140 QITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVD 268
+ TSYDYDAPIDEYG++R+PK HLK+LH A+KLCE AL +VD
Sbjct: 5 EATSYDYDAPIDEYGLVREPKHSHLKELHRAVKLCEQALVSVD 133
Score = 81.3 bits (171), Expect(3) = 7e-036
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +2 / +2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A VG QTS
Sbjct: 194 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVGVQTS 346
Score = 41.4 bits (84), Expect(2) = 6e-008
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -1
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL 439
DV PT+A+LK T QSG ML D GGRL
Sbjct: 345 DV*TPTVALLKTTFLQSGRMLIDQGGRL 262
Score = 37.3 bits (75), Expect(2) = 6e-008
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LV 145
ST +A S +L A S + G L PYSSIGAS*S*LV
Sbjct: 132 STETKACSHNLTALWSSLR*LCFGSLTSPYSSIGAS*S*LV 10
Score = 34.1 bits (68), Expect(2) = 0.040
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -3 / -3
Query: 259 SKS*FTKFNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYL 140
++S T NS + F+M L S +IF+NW IIIIA L
Sbjct: 124 NQSLLT*LNSSVEFFKMTVLWFSNKSIFINWSIIIIACCL 5
Score = 25.8 bits (50), Expect(3) = 7e-036
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHV+ S
Sbjct: 122 VSVDPAITTLGTMQEAHVFRS 184
Score = 24.4 bits (47), Expect(2) = 0.040
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3 / -3
Query: 532 IEXRCLCTNPGCIKSHSFTVW*YAHRPWW 446
+ RCL TN G +K++ + A+ P W
Sbjct: 355 LHLRCLNTNCGTVKNYILAIRKDAN*PRW 269
>gb|BF421012.1|BF421012 FM1_5_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 424
Score = 82.6 bits (174), Expect(3) = 7e-036
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2 / +2
Query: 140 QITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVD 268
+ TSYDYDAPIDEYG++R+PK HLK+LH A+KLCE AL +VD
Sbjct: 5 EATSYDYDAPIDEYGLVREPKHSHLKELHRAVKLCEQALVSVD 133
Score = 81.3 bits (171), Expect(3) = 7e-036
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +2 / +2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A VG QTS
Sbjct: 194 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVGVQTS 346
Score = 41.4 bits (84), Expect(2) = 4e-008
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -2
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL 439
DV PT+A+LK T QSG ML D GGRL
Sbjct: 345 DV*TPTVALLKTTFLQSGRMLIDQGGRL 262
Score = 37.3 bits (75), Expect(2) = 4e-008
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LV 145
ST +A S +L A S + G L PYSSIGAS*S*LV
Sbjct: 132 STETKACSHNLTALWSSLR*LCFGSLTSPYSSIGAS*S*LV 10
Score = 34.1 bits (68), Expect(2) = 0.032
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -3 / -1
Query: 259 SKS*FTKFNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYL 140
++S T NS + F+M L S +IF+NW IIIIA L
Sbjct: 124 NQSLLT*LNSSVEFFKMTVLWFSNKSIFINWSIIIIACCL 5
Score = 25.8 bits (50), Expect(3) = 7e-036
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHV+ S
Sbjct: 122 VSVDPAITTLGTMQEAHVFRS 184
Score = 24.4 bits (47), Expect(2) = 0.032
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3 / -1
Query: 532 IEXRCLCTNPGCIKSHSFTVW*YAHRPWW 446
+ RCL TN G +K++ + A+ P W
Sbjct: 355 LHLRCLNTNCGTVKNYILAIRKDAN*PRW 269
>gb|BM324104.1|BM324104 PIC1_24_C04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 529
Score = 114 bits (243), Expect(2) = 8e-035
Identities = 42/60 (70%), Positives = 50/60 (83%)
Frame = +2 / +1
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVDGS 274
Y GGTN +R++GGP TSYDYDAPIDEYG++R+PKWGHL+D+H AIKLCE AL A D S
Sbjct: 10 YHGGTNLDRSSGGPFIATSYDYDAPIDEYGLVREPKWGHLRDVHKAIKLCEPALIATDPS 189
Score = 80.8 bits (170), Expect(2) = 2e-016
Identities = 37/58 (63%), Positives = 42/58 (72%)
Frame = -1 / -3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
S A+ A SQSL+A C S K PH G L PYSS+GAS*S*LV GPP +RS+LVPP Y
Sbjct: 182 SVAMSAGSQSLMALCTSLKWPHFGSLTSPYSSMGAS*S*LVAMKGPPELRSRLVPP*Y 9
Score = 55.1 bits (114), Expect(2) = 8e-035
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +2 / +2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDC 478
C+AFLANID +V G+ Y LP WSVSILPDC
Sbjct: 422 CAAFLANIDGQSDKTVTFNGRMYRLPAWSVSILPDC 529
Score = 26.3 bits (51), Expect(2) = 2e-016
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1 / -2
Query: 477 QSGSMLTDHGGRL 439
QSG MLTDH G L
Sbjct: 528 QSGRMLTDHAGSL 490
>gb|CW424123.1|CW424123 fsbb001f134e21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f134e21, DNA
sequence
Length = 737
Score = 72.1 bits (151), Expect(3) = 8e-035
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +2 / -2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARV 508
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A V
Sbjct: 139 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATV 2
Score = 65.2 bits (136), Expect(3) = 8e-035
Identities = 25/30 (83%), Positives = 25/30 (83%)
Frame = +2 / -3
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF RTAGGP TSYDYDAPIDEYG
Sbjct: 648 YHGGTNFGRTAGGPFITTSYDYDAPIDEYG 559
Score = 55.1 bits (114), Expect(2) = 3e-011
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = -1 / +2
Query: 192 LKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+ +PYSSIGAS*S*LV+ GPPAVR K VPP Y
Sbjct: 551 VNLPYSSIGAS*S*LVVMKGPPAVRPKFVPP*Y 649
Score = 51.0 bits (105), Expect(3) = 8e-035
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2 / -3
Query: 182 GILRQPKWGHLKDLHAAIKLCESALTAVD 268
G++R+PK HLK+LH A+KLCE AL +VD
Sbjct: 372 GLVREPKHSHLKELHRAVKLCEQALVSVD 286
Score = 36.3 bits (73), Expect = 0.39
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2 / +3
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
YHI QL HHNHS L D Q A+N F +T
Sbjct: 558 YHIHQLEHHNHSLL**RDPQQCARNLFLHDT 650
Score = 35.4 bits (71), Expect = 0.73
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1 / -2
Query: 94 VFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
V W N+F A W S N L*L*C+N* IW
Sbjct: 649 VSWRNKFRAHCWGSLHHNKL*L*CSN**IW 560
Score = 35.4 bits (71), Expect(2) = 3e-011
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -1 / +3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL 439
T+A+LK T QSG ML D GGRL
Sbjct: 3 TVALLKTTFLQSGRMLIDQGGRL 71
>gb|CW156783.1|CW156783 104_559_11146874_116_36378_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146874, DNA
sequence
Length = 687
Score = 65.2 bits (136), Expect(3) = 1e-032
Identities = 25/30 (83%), Positives = 25/30 (83%)
Frame = +2 / +3
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF RTAGGP TSYDYDAPIDEYG
Sbjct: 48 YHGGTNFGRTAGGPFITTSYDYDAPIDEYG 137
Score = 64.8 bits (135), Expect(3) = 1e-032
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +2 / +2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNT 499
C+AFLAN + + YA V + YSLPPWS+SILPD + V FN+
Sbjct: 557 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDLQNVVFNS 685
Score = 55.1 bits (114), Expect = 9e-007
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = -1 / -3
Query: 192 LKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+ +PYSSIGAS*S*LV+ GPPAVR K VPP Y
Sbjct: 145 VNLPYSSIGAS*S*LVVMKGPPAVRPKFVPP*Y 47
Score = 51.0 bits (105), Expect(3) = 1e-032
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2 / +3
Query: 182 GILRQPKWGHLKDLHAAIKLCESALTAVD 268
G++R+PK HLK+LH A+KLCE AL +VD
Sbjct: 324 GLVREPKHSHLKELHRAVKLCEQALVSVD 410
Score = 36.3 bits (73), Expect = 0.39
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -2 / -1
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
YHI QL HHNHS L D Q A+N F +T
Sbjct: 138 YHIHQLEHHNHSLL**RDPQQCARNLFLHDT 46
Score = 35.4 bits (71), Expect = 0.73
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1 / +2
Query: 94 VFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
V W N+F A W S N L*L*C+N* IW
Sbjct: 47 VSWRNKFRAHCWGSLHHNKL*L*CSN**IW 136
>gb|BF587099.1|BF587099 FM1_32_B11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 589
Score = 132 bits (282), Expect(2) = 1e-030
Identities = 51/76 (67%), Positives = 57/76 (75%)
Frame = +2 / +1
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F+ GS NYYMY GGTNF+RT+GGP TSYDYDAPIDEYG+LRQPKWGHL+D
Sbjct: 295 FAVARFIQKGGSFVNYYMYHGGTNFDRTSGGPFIATSYDYDAPIDEYGLLRQPKWGHLRD 474
Query: 221 LHAAIKLCESALTAVD 268
LH AIK E AL + D
Sbjct: 475 LHKAIKQAEPALVSGD 522
Score = 89.5 bits (189), Expect(2) = 5e-020
Identities = 43/66 (65%), Positives = 46/66 (69%)
Frame = -1 / -3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
S A S L+A CRS + PH GCL PYSSIGAS*S*LV +GPP VRSKLVPP YM*
Sbjct: 521 SPETSAGSACLMALCRSLR*PHFGCLSRPYSSIGAS*S*LVAMNGPPEVRSKLVPPWYM* 342
Query: 87 *FCKLP 70
* K P
Sbjct: 341 *LTKEP 324
Score = 42.8 bits (87), Expect = 0.005
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3 / +1
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++PHRP +D AFAVARF Q+G ++
Sbjct: 256 GGAVPHRPVEDMAFAVARFIQKGGSF 333
Score = 33.6 bits (67), Expect = 2.6
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -3 / -2
Query: 214 QMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
Q+ P RL T+FV+ I+I+A + +++G++ +HV+I
Sbjct: 468 QVTPFRLPQQTVFVDRRIVIVAGGDERPAGGAVEVGASMVHVVI 337
Score = 29.0 bits (57), Expect(2) = 5e-020
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3 / -3
Query: 58 KRATAKALS*AGLCGNDSP 2
KRATAKA+S G CG P
Sbjct: 311 KRATAKAMSSTGRCGTAPP 255
Score = 22.1 bits (42), Expect(2) = 1e-030
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2 / +1
Query: 263 VDGSPHYVKLGPMQEAHVYSSEN 331
V G P +G ++A+VY S +
Sbjct: 511 VSGDPTIQSIGNYEKAYVYKSSS 579
>gb|CW138949.1|CW138949 104_528_11134971_148_34894_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11134971, DNA
sequence
Length = 706
Score = 130 bits (279), Expect = 1e-029
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +2 / +3
Query: 305 EAHVYSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSIL 469
+AHVYSSENVHTNGSISGN+QFCSAFL NIDEHKYASVWIFGK YSLPPWSVSIL
Sbjct: 540 QAHVYSSENVHTNGSISGNAQFCSAFLCNIDEHKYASVWIFGKIYSLPPWSVSIL 704
Score = 129 bits (276), Expect = 4e-029
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = -1 / -1
Query: 471 GSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNCEFPEMLPFVWTFSLEYTCA 307
GSMLTDHGGRL* FPKIQTEAYLCSSML RKAEQNC FPEMLPFVWTFSLEYTCA
Sbjct: 706 GSMLTDHGGRL*IFPKIQTEAYLCSSMLQRKAEQNCAFPEMLPFVWTFSLEYTCA 542
Score = 125 bits (268), Expect = 5e-028
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = -2 / -2
Query: 470 VVCSQTMVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVP 306
VVCSQTMVVDY+ FQKS+LKHIYVHQC +EKLSKTV+FLKCFHLCGHFH N HVP
Sbjct: 705 VVCSQTMVVDYRFFQKSKLKHIYVHQCCKEKLSKTVHFLKCFHLCGHFHLNIHVP 541
Score = 124 bits (266), Expect = 9e-028
Identities = 50/55 (90%), Positives = 52/55 (94%)
Frame = +1 / +2
Query: 307 GTCVFQ*KCPHKWKHFRKFTVLLSFSCQH**T*ICFSLDFWKIL*STTMVCEHTT 471
GTC+F+*KCPHKWKHFRK TVLLSFS QH**T*ICFSLDFWK L*STTMVCEHTT
Sbjct: 542 GTCIFK*KCPHKWKHFRKCTVLLSFSLQH**T*ICFSLDFWKNL*STTMVCEHTT 706
Score = 111 bits (236), Expect = 1e-023
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = -3 / -3
Query: 469 *YAHRPWW*TIRFSKNPD*SIFMFINVGKKS*AKL*IS*NASICVDIFTGIHMCL 305
*YAHRPWW*TI FSKNP+*SIFMFINV KKS*AKL IS*NASICVDIFT I+MCL
Sbjct: 704 *YAHRPWW*TIDFSKNPN*SIFMFINVAKKS*AKLCIS*NASICVDIFT*IYMCL 540
Score = 110 bits (235), Expect = 2e-023
Identities = 47/55 (85%), Positives = 48/55 (87%)
Frame = +3 / +1
Query: 306 RHMCIPVKMSTQMEAFQEIHSFAQLFLPTLMNINMLQSGFLENLIVYHHGL*AYY 470
RHM I VKMSTQMEAFQE+HSFAQLF TLMNINMLQ GFLE IVYHHGL*AYY
Sbjct: 541 RHMYIQVKMSTQMEAFQEMHSFAQLFFATLMNINMLQFGFLEKSIVYHHGL*AYY 705
>gb|CD205027.1|CD205027 HS1_11_D08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_11_D08_A012 5', mRNA sequence
Length = 712
Score = 81.3 bits (171), Expect(3) = 2e-029
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +2 / +2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A VG QTS
Sbjct: 170 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVGVQTS 322
Score = 61.1 bits (127), Expect(3) = 2e-029
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +2 / +2
Query: 170 IDEYGILRQPKWGHLKDLHAAIKLCESALTAVD 268
IDEYG++R+PK HLK+LH A+KLCE AL +VD
Sbjct: 11 IDEYGLVREPKHSHLKELHRAVKLCEQALVSVD 109
Score = 41.4 bits (84), Expect = 0.012
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -2
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL 439
DV PT+A+LK T QSG ML D GGRL
Sbjct: 321 DV*TPTVALLKTTFLQSGRMLIDQGGRL 238
Score = 25.8 bits (50), Expect(3) = 2e-029
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHV+ S
Sbjct: 98 VSVDPAITTLGTMQEAHVFRS 160
>gb|BI211411.1|BI211411 IP1_60_D09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 549
Score = 128 bits (275), Expect = 5e-029
Identities = 50/76 (65%), Positives = 57/76 (75%)
Frame = +2 / +2
Query: 41 FCCCSFLSTWGSLQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKD 220
F F+ GS NYYMY GGTNF RTAGGP TSYDYDAPIDEYG++R+PK HLK+
Sbjct: 299 FAVARFVQKGGSFINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVREPKHSHLKE 478
Query: 221 LHAAIKLCESALTAVD 268
LH A+KLCE AL +VD
Sbjct: 479 LHRAVKLCEQALVSVD 526
Score = 70.3 bits (147), Expect = 2e-011
Identities = 38/66 (57%), Positives = 42/66 (63%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKYM* 88
ST +A S +L A S + G L PYSSIGAS*S*LV+ GPPAVR K VPP YM*
Sbjct: 525 STETKACSHNLTALWSSLR*LCFGSLTSPYSSIGAS*S*LVVMKGPPAVRPKFVPP*YM* 346
Query: 87 *FCKLP 70
* K P
Sbjct: 345 *LIKEP 328
Score = 44.6 bits (91), Expect = 0.001
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = -3 / -3
Query: 259 SKS*FTKFNSCM*VFQMPPLRLS*DTIFVNWCIIIIASYLKWTTSCPLKIGSTKIHVII 83
++S T NS + F+M L S +IF+NW IIIIA + T S +I S+ IHV+I
Sbjct: 517 NQSLLT*LNSSVEFFKMTVLWFSNKSIFINWSIIIIACCDEGTPSSAPEICSSMIHVVI 341
Score = 43.2 bits (88), Expect(2) = 3e-008
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +1 / +1
Query: 82 KLLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
+LLHV W N+F A W S N L*L*C+N* IW
Sbjct: 340 QLLHVSWRNKFRAHCWGSLHHNKL*L*CSN**IW 441
Score = 40.9 bits (83), Expect = 0.016
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2 / -2
Query: 197 VVLRYHIRQLVHHNHS*LSEVDHQLSAQNWFHQNTCNN 84
V+ + HI QL HHNHS L D Q A+N F +TC+N
Sbjct: 455 VL*QVHIHQLEHHNHSLL**RDPQQCARNLFLHDTCSN 342
Score = 35.0 bits (70), Expect(2) = 3e-008
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++ RP +D AFAVARF Q+G ++
Sbjct: 260 GGTIRQRPVEDLAFAVARFVQKGGSF 337
Score = 32.7 bits (65), Expect = 4.9
Identities = 21/48 (43%), Positives = 24/48 (50%)
Frame = +3 / +3
Query: 60 YQRGEAYKIITCILVEPILSGQLVVHFR*LAMIMMHQLTNMVS*DNLS 203
Y+R I TCI+ E I L V AMIMM QL NM +N S
Sbjct: 318 YKRVVLLSITTCIMEEQISGALLGVPSSQQAMIMMLQLMNMDLLENQS 461
>gb|CN137037.1|CN137037 OX1_54_G02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_54_G02_A002 5', mRNA sequence
Length = 730
Score = 80.3 bits (169), Expect(2) = 4e-025
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = +2 / +3
Query: 152 YDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVD 268
YDYDAPIDEYG+LRQPKWGHL+DLH AIK E AL + D
Sbjct: 426 YDYDAPIDEYGLLRQPKWGHLRDLHKAIKQAEPALVSSD 542
Score = 55.1 bits (114), Expect(2) = 4e-025
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = +2 / +3
Query: 359 NSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAF 493
+S C+AFL+N + A V G+ Y LP WS+S+LPDC T F
Sbjct: 594 SSGACAAFLSNYHTNAAARVVFNGRRYDLPAWSISVLPDCRTAVF 728
Score = 51.9 bits (107), Expect(2) = 2e-008
Identities = 24/39 (61%), Positives = 26/39 (66%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSSIGAS*S* 151
S A S L+A CRS + PH GCL PYSSIGAS*S*
Sbjct: 541 SLETSAGSACLMALCRSLR*PHFGCLSRPYSSIGAS*S* 425
Score = 28.6 bits (56), Expect(2) = 2e-008
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -1 / -1
Query: 495 LKATVSQSGSMLTDHGGRL*DFPKIQTEA 409
L V QSGS L DH GR * P T A
Sbjct: 730 LNTAVLQSGSTLMDHAGRS*RRPLNTTRA 644
>gb|CW179382.1|CW179382 104_593_11160070_148_36628_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160070, DNA
sequence
Length = 697
Score = 62.5 bits (130), Expect(3) = 2e-023
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2 / +1
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF RT+GGP TSYDYDAP+DEYG
Sbjct: 10 YHGGTNFGRTSGGPYITTSYDYDAPLDEYG 99
Score = 51.5 bits (106), Expect(3) = 1e-015
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / -3
Query: 192 LKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+ +PYSS GAS*S*LV+ GPP VR KLVPP Y
Sbjct: 107 INLPYSSKGAS*S*LVVMYGPPEVRPKLVPPWY 9
Score = 48.3 bits (99), Expect(3) = 2e-023
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = +2 / +1
Query: 434 SYSLPPWSVSILPDCETVAFNTARV 508
++ +P WSVSILPDC+TVA+NTA+V
Sbjct: 523 THLVPAWSVSILPDCKTVAYNTAKV 597
Score = 39.1 bits (79), Expect(3) = 2e-023
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2 / +1
Query: 182 GILRQPKWGHLKDLHAAIKLCESAL 256
G +RQPK+GHLKDLH +K E L
Sbjct: 220 GNIRQPKYGHLKDLHNLLKSMEKIL 294
Score = 36.8 bits (74), Expect(3) = 1e-015
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1 / -3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQ 370
T AVL ATV QSG MLTDH G * ++ + + +L ++ E+
Sbjct: 596 TFAVL*ATVLQSGKMLTDHAGTR*VPARVTFTSLSSNWLLMKQTEE 459
Score = 34.5 bits (69), Expect(3) = 1e-015
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1 / -3
Query: 255 RADSQSLIAACRSFKCPHLGCLKIP 181
R S L RSF+CP+LGCL +P
Sbjct: 293 RIFSMDLSKLWRSFRCPYLGCLMLP 219
Score = 32.7 bits (65), Expect = 4.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1 / +3
Query: 100 WWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
W NQF WW N L*L C R+W
Sbjct: 15 WRNQFRTHFWWPVHHNQL*LRCAFGRVW 98
Score = 32.2 bits (64), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2 / -1
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
YH R H +HS L HQ +NWF T
Sbjct: 100 YHTRPKAHRSHSWL*CTGHQKCVRNWFLHGT 8
>gb|BI351598.1|BI351598 IP1_72_H09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 416
Score = 79.9 bits (168), Expect(3) = 5e-023
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN A VG QTS
Sbjct: 139 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNGATVGVQTS 291
Score = 40.5 bits (82), Expect(3) = 5e-023
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / +1
Query: 200 KWGHLKDLHAAIKLCESALTAVD 268
K HLK+LH A+KLCE AL +VD
Sbjct: 10 KHSHLKELHRAVKLCEQALVSVD 78
Score = 40.0 bits (81), Expect = 0.031
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -1 / -1
Query: 522 DVCVPTLAVLKATVSQSGSMLTDHGGRL 439
DV PT+A LK T QSG ML D GGRL
Sbjct: 290 DV*TPTVAPLKTTFLQSGRMLIDQGGRL 207
Score = 25.8 bits (50), Expect(3) = 5e-023
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2 / +1
Query: 263 VDGSPHYVKLGPMQEAHVYSS 325
V P LG MQEAHV+ S
Sbjct: 67 VSVDPAITTLGTMQEAHVFRS 129
>gb|CW324268.1|CW324268 104_818_11477066_116_35905_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477066, DNA
sequence
Length = 699
Score = 67.0 bits (140), Expect(2) = 1e-022
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = +2 / -3
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQT 520
C+AFLANID +V G+ Y LP WSVSILPDC+ V NTA+V T
Sbjct: 319 CAAFLANIDGQSDKTVTFNGRMYRLPAWSVSILPDCKNVVLNTAQVHITT 170
Score = 61.6 bits (128), Expect(2) = 1e-022
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2 / -2
Query: 173 DEYGILRQPKWGHLKDLHAAIKLCESALTAVDGS 274
D+ G++R+PKWGHL+D+H AIKLCE AL A D S
Sbjct: 653 DDSGLVREPKWGHLRDVHKAIKLCEPALIATDPS 552
Score = 40.0 bits (81), Expect(2) = 5e-007
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = -1 / +1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSS 172
S A+ A SQSL+A C S K PH G L P SS
Sbjct: 559 SVAMSAGSQSLMALCTSLKWPHFGSLTSPESS 654
Score = 35.9 bits (72), Expect(2) = 5e-007
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1 / +3
Query: 519 VCVPTLAVLKATVSQSGSMLTDHGGRL 439
V + T AVL T QSG MLTDH G L
Sbjct: 171 VVICTCAVLSTTFLQSGRMLTDHAGSL 251
>gb|CW357901.1|CW357901 fsbb001f024m03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024m03, DNA
sequence
Length = 712
Score = 67.0 bits (140), Expect(2) = 1e-022
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = +2 / +3
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQT 520
C+AFLANID +V G+ Y LP WSVSILPDC+ V NTA+V T
Sbjct: 375 CAAFLANIDGQSDKTVTFNGRMYRLPAWSVSILPDCKNVVLNTAQVHITT 524
Score = 61.6 bits (128), Expect(2) = 1e-022
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2 / +2
Query: 173 DEYGILRQPKWGHLKDLHAAIKLCESALTAVDGS 274
D+ G++R+PKWGHL+D+H AIKLCE AL A D S
Sbjct: 41 DDSGLVREPKWGHLRDVHKAIKLCEPALIATDPS 142
Score = 40.0 bits (81), Expect(2) = 5e-007
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSS 172
S A+ A SQSL+A C S K PH G L P SS
Sbjct: 135 SVAMSAGSQSLMALCTSLKWPHFGSLTSPESS 40
Score = 35.9 bits (72), Expect(2) = 5e-007
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1 / -1
Query: 519 VCVPTLAVLKATVSQSGSMLTDHGGRL 439
V + T AVL T QSG MLTDH G L
Sbjct: 523 VVICTCAVLSTTFLQSGRMLTDHAGSL 443
>gb|BE595359.1|BE595359 PI1_53_B08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 604
Score = 72.5 bits (152), Expect(2) = 8e-022
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +2 / +3
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y+S + ++ C+AFLANID +V G+ Y LP WSVSILPDC+ V N
Sbjct: 87 YTSLGQNAEAAVYKTGSVCAAFLANIDGQSDKTVTFNGRMYRLPAWSVSILPDCKNVVLN 266
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 267 TAQINSQVT 293
Score = 51.9 bits (107), Expect(2) = 8e-022
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +2 / +3
Query: 194 QPKWGHLKDLHAAIKLCESALTAVDGS 274
+PKWGHL+D+H AIKLCE AL A D S
Sbjct: 6 RPKWGHLRDVHKAIKLCEPALIATDPS 86
Score = 34.1 bits (68), Expect(2) = 2e-004
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLG 196
S A+ A SQSL+A C S K PH G
Sbjct: 79 SVAMSAGSQSLMALCTSLKWPHFG 8
Score = 32.7 bits (65), Expect(2) = 2e-004
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1 / -1
Query: 501 AVLKATVSQSGSMLTDHGGRL 439
AVL T QSG MLTDH G L
Sbjct: 271 AVLSTTFLQSGRMLTDHAGSL 209
>gb|CW344307.1|CW344307 104_846_11487885_116_36193_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487885, DNA
sequence
Length = 645
Score = 73.5 bits (154), Expect(2) = 2e-021
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGSP 550
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A V + F + S
Sbjct: 331 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVSFTFAYFQYGTFSS 510
Query: 551 S 553
S
Sbjct: 511 S 513
Score = 51.0 bits (105), Expect(2) = 2e-021
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2 / +2
Query: 182 GILRQPKWGHLKDLHAAIKLCESALTAVD 268
G++R+PK HLK+LH A+KLCE AL +VD
Sbjct: 98 GLVREPKHSHLKELHRAVKLCEQALVSVD 184
Score = 35.4 bits (71), Expect = 0.73
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -1 / -2
Query: 507 TLAVLKATVSQSGSMLTDHGGRL 439
T+A+LK T QSG ML D GGRL
Sbjct: 467 TVALLKTTFLQSGRMLIDQGGRL 399
>gb|CW131204.1|CW131204 104_514_11115545_148_34790_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115545, DNA
sequence
Length = 622
Score = 62.5 bits (130), Expect(3) = 2e-020
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2 / +3
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF RT+GGP TSYDYDAP+DEYG
Sbjct: 51 YHGGTNFGRTSGGPYITTSYDYDAPLDEYG 140
Score = 51.5 bits (106), Expect(3) = 5e-014
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / -1
Query: 192 LKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+ +PYSS GAS*S*LV+ GPP VR KLVPP Y
Sbjct: 148 INLPYSSKGAS*S*LVVMYGPPEVRPKLVPPWY 50
Score = 39.1 bits (79), Expect(3) = 2e-020
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2 / +3
Query: 182 GILRQPKWGHLKDLHAAIKLCESAL 256
G +RQPK+GHLKDLH +K E L
Sbjct: 261 GNIRQPKYGHLKDLHNLLKSMEKIL 335
Score = 37.3 bits (75), Expect(3) = 2e-020
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2 / +3
Query: 434 SYSLPPWSVSILPDCETVA 490
++ +P WSVSILPDC+TVA
Sbjct: 564 THLVPAWSVSILPDCKTVA 620
Score = 34.5 bits (69), Expect(3) = 5e-014
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1 / -1
Query: 255 RADSQSLIAACRSFKCPHLGCLKIP 181
R S L RSF+CP+LGCL +P
Sbjct: 334 RIFSMDLSKLWRSFRCPYLGCLMLP 260
Score = 33.1 bits (66), Expect = 3.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1 / +2
Query: 85 LLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
++ V W NQF WW N L*L C R+W
Sbjct: 41 IIIVPWRNQFRTHFWWPVHHNQL*LRCAFGRVW 139
Score = 32.2 bits (64), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2 / -2
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
YH R H +HS L HQ +NWF T
Sbjct: 141 YHTRPKAHRSHSWL*CTGHQKCVRNWFLHGT 49
Score = 30.9 bits (61), Expect(3) = 5e-014
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1 / -1
Query: 489 ATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQ 370
ATV QSG MLTDH G * ++ + + +L ++ E+
Sbjct: 619 ATVLQSGKMLTDHAGTR*VPARVTFTSLSSNWLLMKQTEE 500
>gb|CW344308.1|CW344308 104_846_11487885_148_36194_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487885, DNA
sequence
Length = 652
Score = 73.5 bits (154), Expect(2) = 3e-020
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = +2 / -1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGSP 550
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A V + F + S
Sbjct: 424 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVSFTFAYFQYGTFSS 245
Query: 551 S 553
S
Sbjct: 244 S 242
Score = 47.3 bits (97), Expect(2) = 3e-020
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2 / -2
Query: 188 LRQPKWGHLKDLHAAIKLCESALTAVD 268
+R+PK HLK+LH A+KLCE AL +VD
Sbjct: 651 VREPKHSHLKELHRAVKLCEQALVSVD 571
Score = 35.4 bits (71), Expect = 0.73
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -1 / +3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL 439
T+A+LK T QSG ML D GGRL
Sbjct: 288 TVALLKTTFLQSGRMLIDQGGRL 356
>gb|CW073953.1|CW073953 104_342_10782352_114_31473_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782352, DNA
sequence
Length = 740
Score = 99.1 bits (210), Expect = 5e-020
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = -2 / -3
Query: 422 SRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVP 306
S+LKHIYVHQCWQEKLSKTV+FLKCFHLCGHFH N HVP
Sbjct: 738 SKLKHIYVHQCWQEKLSKTVHFLKCFHLCGHFHLNIHVP 622
Score = 98.2 bits (208), Expect = 9e-020
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = +2 / +3
Query: 305 EAHVYSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWI 424
+AHVYSSENVHTNGSISGN+QFCSAFLANIDEHKYASVWI
Sbjct: 621 QAHVYSSENVHTNGSISGNAQFCSAFLANIDEHKYASVWI 740
Score = 97.3 bits (206), Expect = 2e-019
Identities = 38/39 (97%), Positives = 38/39 (97%)
Frame = -1 / -2
Query: 423 IQTEAYLCSSMLARKAEQNCEFPEMLPFVWTFSLEYTCA 307
IQTEAYLCSSMLARKAEQNC FPEMLPFVWTFSLEYTCA
Sbjct: 739 IQTEAYLCSSMLARKAEQNCAFPEMLPFVWTFSLEYTCA 623
Score = 93.2 bits (197), Expect = 3e-018
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = +1 / +2
Query: 307 GTCVFQ*KCPHKWKHFRKFTVLLSFSCQH**T*ICFSLD 423
GTC+F+*KCPHKWKHFRK TVLLSFSCQH**T*ICFSLD
Sbjct: 623 GTCIFK*KCPHKWKHFRKCTVLLSFSCQH**T*ICFSLD 739
Score = 82.6 bits (174), Expect = 5e-015
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = +3 / +1
Query: 306 RHMCIPVKMSTQMEAFQEIHSFAQLFLPTLMNINMLQSG 422
RHM I VKMSTQMEAFQE+HSFAQLFLPTLMNINMLQ G
Sbjct: 622 RHMYIQVKMSTQMEAFQEMHSFAQLFLPTLMNINMLQFG 738
Score = 78.5 bits (165), Expect = 8e-014
Identities = 36/40 (90%), Positives = 38/40 (95%)
Frame = -3 / -1
Query: 424 NPD*SIFMFINVGKKS*AKL*IS*NASICVDIFTGIHMCL 305
NP+*SIFMFINVGKKS*AKL IS*NASICVDIFT I+MCL
Sbjct: 740 NPN*SIFMFINVGKKS*AKLCIS*NASICVDIFT*IYMCL 621
>gb|CL184250.1|CL184250 104_397_10898729_116_32364_073 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898729, DNA
sequence
Length = 539
Score = 66.6 bits (139), Expect(2) = 6e-020
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2 / -1
Query: 86 YYMYFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
+ Y GGTNF+RT+GGP TSYDYDAPIDEYG
Sbjct: 344 FLQYHGGTNFDRTSGGPFIATSYDYDAPIDEYG 246
Score = 54.7 bits (113), Expect(2) = 6e-011
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -1 / +1
Query: 183 PYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
PYSSIGAS*S*LV +GPP VRSKLVPP Y
Sbjct: 247 PYSSIGAS*S*LVAMNGPPEVRSKLVPPWY 336
Score = 52.8 bits (109), Expect(2) = 6e-020
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +2 / -2
Query: 182 GILRQPKWGHLKDLHAAIKLCESALTAVD 268
G+LRQPKWGHL+DLH AIK E AL + D
Sbjct: 88 GLLRQPKWGHLRDLHKAIKQAEPALVSGD 2
Score = 34.1 bits (68), Expect(2) = 6e-011
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1 / +3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIP 181
S A S L+A CRS + PH GCL P
Sbjct: 3 SPETSAGSACLMALCRSLR*PHFGCLSRP 89
>gb|BG462949.1|BG462949 EM1_46_F07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 98.7 bits (209), Expect = 7e-020
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +2 / +1
Query: 461 SILPDCETVAFNTARVGTQTSXFNVESGSPSYSSRHKPRILS 586
SILPDCETVAFNTARVGTQTS FNVESGSPSYSSRHKPRILS
Sbjct: 10 SILPDCETVAFNTARVGTQTSFFNVESGSPSYSSRHKPRILS 135
Score = 96.4 bits (204), Expect = 3e-019
Identities = 42/43 (97%), Positives = 42/43 (97%)
Frame = -1 / -3
Query: 588 RDRILGLCLLE*LGDPDSTLKXDVCVPTLAVLKATVSQSGSML 460
RDRILGLCLLE*LGDPDSTLK DVCVPTLAVLKATVSQSGSML
Sbjct: 137 RDRILGLCLLE*LGDPDSTLKNDVCVPTLAVLKATVSQSGSML 9
Score = 93.2 bits (197), Expect = 3e-018
Identities = 37/43 (86%), Positives = 39/43 (90%)
Frame = +1 / +3
Query: 460 EHTTRL*NCGF*YSQGWYTNIXFQCRIWVPQLFK*A*T*NSIP 588
EHTTRL*NCGF*YS+GWYTN+ F CRIWVPQLFK* * *NSIP
Sbjct: 9 EHTTRL*NCGF*YSEGWYTNVVF*CRIWVPQLFK*T*A*NSIP 137
Score = 91.8 bits (194), Expect = 8e-018
Identities = 37/43 (86%), Positives = 38/43 (88%)
Frame = -2 / -1
Query: 587 GIEF*VYAYLNSWGTQIRH*KXMFVYQPWLY*KPQFHSLVVCS 459
GIEF* Y YLN+WGTQIRH*K FVYQP LY*KPQFHSLVVCS
Sbjct: 136 GIEF*AYVYLNNWGTQIRH*KTTFVYQPSLY*KPQFHSLVVCS 8
Score = 89.0 bits (188), Expect = 5e-017
Identities = 36/42 (85%), Positives = 37/42 (88%)
Frame = +3 / +2
Query: 462 AYYQTVKLWLLIQPGLVHKHRFSMSNLGPPAIQVGINLEFYP 587
AYYQTVKLWLLIQ GLVHK RF MSNLGPP IQV I+LEFYP
Sbjct: 11 AYYQTVKLWLLIQRGLVHKRRFLMSNLGPPVIQVDISLEFYP 136
Score = 84.9 bits (179), Expect = 9e-016
Identities = 35/42 (83%), Positives = 36/42 (85%)
Frame = -3 / -2
Query: 586 G*NSRFMPT*IAGGPRFDIEXRCLCTNPGCIKSHSFTVW*YA 461
G*NSR M T*I GGPRFDI+ R LCTNP CIKSHSFTVW*YA
Sbjct: 135 G*NSRLMST*ITGGPRFDIKKRRLCTNPRCIKSHSFTVW*YA 10
>gb|BG557835.1|BG557835 EM1_55_A02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 251
Score = 98.7 bits (209), Expect = 7e-020
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +2 / +1
Query: 461 SILPDCETVAFNTARVGTQTSXFNVESGSPSYSSRHKPRILS 586
SILPDCETVAFNTARVGTQTS FNVESGSPSYSSRHKPRILS
Sbjct: 10 SILPDCETVAFNTARVGTQTSFFNVESGSPSYSSRHKPRILS 135
Score = 96.4 bits (204), Expect = 3e-019
Identities = 42/43 (97%), Positives = 42/43 (97%)
Frame = -1 / -1
Query: 588 RDRILGLCLLE*LGDPDSTLKXDVCVPTLAVLKATVSQSGSML 460
RDRILGLCLLE*LGDPDSTLK DVCVPTLAVLKATVSQSGSML
Sbjct: 137 RDRILGLCLLE*LGDPDSTLKNDVCVPTLAVLKATVSQSGSML 9
Score = 93.2 bits (197), Expect = 3e-018
Identities = 37/43 (86%), Positives = 39/43 (90%)
Frame = +1 / +3
Query: 460 EHTTRL*NCGF*YSQGWYTNIXFQCRIWVPQLFK*A*T*NSIP 588
EHTTRL*NCGF*YS+GWYTN+ F CRIWVPQLFK* * *NSIP
Sbjct: 9 EHTTRL*NCGF*YSEGWYTNVVF*CRIWVPQLFK*T*A*NSIP 137
Score = 91.8 bits (194), Expect = 8e-018
Identities = 37/43 (86%), Positives = 38/43 (88%)
Frame = -2 / -2
Query: 587 GIEF*VYAYLNSWGTQIRH*KXMFVYQPWLY*KPQFHSLVVCS 459
GIEF* Y YLN+WGTQIRH*K FVYQP LY*KPQFHSLVVCS
Sbjct: 136 GIEF*AYVYLNNWGTQIRH*KTTFVYQPSLY*KPQFHSLVVCS 8
Score = 89.0 bits (188), Expect = 5e-017
Identities = 36/42 (85%), Positives = 37/42 (88%)
Frame = +3 / +2
Query: 462 AYYQTVKLWLLIQPGLVHKHRFSMSNLGPPAIQVGINLEFYP 587
AYYQTVKLWLLIQ GLVHK RF MSNLGPP IQV I+LEFYP
Sbjct: 11 AYYQTVKLWLLIQRGLVHKRRFLMSNLGPPVIQVDISLEFYP 136
Score = 84.9 bits (179), Expect = 9e-016
Identities = 35/42 (83%), Positives = 36/42 (85%)
Frame = -3 / -3
Query: 586 G*NSRFMPT*IAGGPRFDIEXRCLCTNPGCIKSHSFTVW*YA 461
G*NSR M T*I GGPRFDI+ R LCTNP CIKSHSFTVW*YA
Sbjct: 135 G*NSRLMST*ITGGPRFDIKKRRLCTNPRCIKSHSFTVW*YA 10
>gb|CW460606.1|CW460606 fsbb001f207o02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207o02, DNA
sequence
Length = 520
Score = 65.7 bits (137), Expect(2) = 1e-019
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +2 / +2
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF+RT+GGP TSYDYDAPIDEYG
Sbjct: 8 YHGGTNFDRTSGGPFIATSYDYDAPIDEYG 97
Score = 54.7 bits (113), Expect(2) = 6e-011
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -1 / -2
Query: 183 PYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
PYSSIGAS*S*LV +GPP VRSKLVPP Y
Sbjct: 96 PYSSIGAS*S*LVAMNGPPEVRSKLVPPWY 7
Score = 52.8 bits (109), Expect(2) = 1e-019
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +2 / +3
Query: 182 GILRQPKWGHLKDLHAAIKLCESALTAVD 268
G+LRQPKWGHL+DLH AIK E AL + D
Sbjct: 255 GLLRQPKWGHLRDLHKAIKQAEPALVSGD 341
Score = 34.1 bits (68), Expect(2) = 6e-011
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1 / -1
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIP 181
S A S L+A CRS + PH GCL P
Sbjct: 340 SPETSAGSACLMALCRSLR*PHFGCLSRP 254
>gb|CL161335.1|CL161335 104_352_10805647_114_31826_319 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805647, DNA
sequence
Length = 755
Score = 61.6 bits (128), Expect(2) = 4e-019
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2 / -2
Query: 173 DEYGILRQPKWGHLKDLHAAIKLCESALTAVDGS 274
D+ G++R+PKWGHL+D+H AIKLCE AL A D S
Sbjct: 289 DDSGLVREPKWGHLRDVHKAIKLCEPALIATDPS 188
Score = 55.6 bits (115), Expect(2) = 4e-019
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +2 / -2
Query: 104 GTNFERTAGGPLQITSYDYDAPIDEYG 184
GTN +R++GGP TSYDYDAPIDEYG
Sbjct: 754 GTNLDRSSGGPFIATSYDYDAPIDEYG 674
Score = 46.0 bits (94), Expect(2) = 6e-010
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -1 / +3
Query: 186 IPYSSIGAS*S*LVI*SGPPAVRSKLVP 103
+PYSS+GAS*S*LV GPP +RS+LVP
Sbjct: 672 LPYSSMGAS*S*LVAMKGPPELRSRLVP 755
Score = 40.0 bits (81), Expect(2) = 6e-010
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = -1 / +3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSS 172
S A+ A SQSL+A C S K PH G L P SS
Sbjct: 195 SVAMSAGSQSLMALCTSLKWPHFGSLTSPESS 290
>gb|CW032344.1|CW032344 104_261_10501323_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501323, DNA
sequence
Length = 767
Score = 62.5 bits (130), Expect(3) = 4e-018
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2 / +3
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF RT+GGP TSYDYDAP+DEYG
Sbjct: 246 YHGGTNFGRTSGGPYITTSYDYDAPLDEYG 335
Score = 51.5 bits (106), Expect(2) = 2e-010
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / -2
Query: 192 LKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+ +PYSS GAS*S*LV+ GPP VR KLVPP Y
Sbjct: 343 INLPYSSKGAS*S*LVVMYGPPEVRPKLVPPWY 245
Score = 39.1 bits (79), Expect(3) = 4e-018
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2 / +3
Query: 182 GILRQPKWGHLKDLHAAIKLCESAL 256
G +RQPK+GHLKDLH +K E L
Sbjct: 456 GNIRQPKYGHLKDLHNLLKSMEKIL 530
Score = 34.5 bits (69), Expect(2) = 2e-010
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 255 RADSQSLIAACRSFKCPHLGCLKIP 181
R S L RSF+CP+LGCL +P
Sbjct: 529 RIFSMDLSKLWRSFRCPYLGCLMLP 455
Score = 33.1 bits (66), Expect = 3.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1 / +2
Query: 85 LLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
++ V W NQF WW N L*L C R+W
Sbjct: 236 IIIVPWRNQFRTHFWWPVHHNQL*LRCAFGRVW 334
Score = 32.2 bits (64), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2 / -3
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
YH R H +HS L HQ +NWF T
Sbjct: 336 YHTRPKAHRSHSWL*CTGHQKCVRNWFLHGT 244
Score = 29.9 bits (59), Expect(3) = 4e-018
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3 / +3
Query: 18 HRPAQDSAFAVARFYQR 68
HR A+D AFAVA F+Q+
Sbjct: 39 HRSAEDIAFAVAMFFQK 89
>gb|BE360363.1|BE360363 DG1_63_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 584
Score = 72.5 bits (152), Expect(2) = 9e-018
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +2 / +1
Query: 317 YSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFN 496
Y+S + ++ C+AFLANID +V G+ Y LP WSVSILPDC+ V N
Sbjct: 67 YTSLGQNAEAAVYKTGSVCAAFLANIDGQSDKTVTFNGRMYRLPAWSVSILPDCKNVVLN 246
Query: 497 TARVGTQTS 523
TA++ +Q +
Sbjct: 247 TAQINSQVT 273
Score = 38.2 bits (77), Expect(2) = 9e-018
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +1
Query: 209 HLKDLHAAIKLCESALTAVDGS 274
HL+D+H AIKLCE AL A D S
Sbjct: 1 HLRDVHKAIKLCEPALIATDPS 66
Score = 32.7 bits (65), Expect = 4.9
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -1 / -1
Query: 501 AVLKATVSQSGSMLTDHGGRL 439
AVL T QSG MLTDH G L
Sbjct: 251 AVLSTTFLQSGRMLTDHAGSL 189
>gb|BZ625803.1|BZ625803 ih40h10.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih40h10 5', DNA sequence
Length = 613
Score = 64.3 bits (134), Expect(3) = 3e-017
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = +2 / +1
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYGI 187
Y GGTNF RT GGP TSYDYDAPIDEYG+
Sbjct: 331 YHGGTNFGRTTGGPFITTSYDYDAPIDEYGL 423
Score = 52.4 bits (108), Expect = 6e-006
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = -1 / -3
Query: 183 PYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
PYSSIGAS*S*LV+ +GPP VR K VPP Y
Sbjct: 419 PYSSIGAS*S*LVVMNGPPVVRPKFVPP*Y 330
Score = 44.1 bits (90), Expect = 0.002
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -3 / -2
Query: 184 TIFVNWCIIIIASYLKWTTSCPLKIGSTKI 95
TIF+NWCII+IAS +W+ S KI +T I
Sbjct: 420 TIFINWCIIVIASCNEWSPSSATKICATMI 331
Score = 40.9 bits (83), Expect = 0.016
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1 / +3
Query: 94 VFWWNQF*ADSWWSTSDN*L*L*CTN*RIWY 186
V WW++F + W + N*L*L*CTN* IW+
Sbjct: 330 VSWWHKFWSHYWGTIHYN*L*L*CTN**IWF 422
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -2 / -1
Query: 182 HIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
HI QLVHH+HS*L + Q QN H +T
Sbjct: 418 HIHQLVHHSHS*L**MVPQ*CDQNLCHHDT 329
Score = 31.8 bits (63), Expect(3) = 3e-017
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 182 GILRQPKWGHLKDLH 226
G+ R PKW HL+DLH
Sbjct: 504 GLRRFPKWAHLRDLH 548
Score = 31.8 bits (63), Expect = 9.3
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3 / +2
Query: 96 ILVEPILSGQLVVHFR*LAMIMMHQLTNMV 185
I+V IL L H LAM MMHQL NMV
Sbjct: 332 IMVAQILVALLGDHSLQLAMTMMHQLMNMV 421
Score = 31.8 bits (63), Expect(3) = 3e-017
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3 / +2
Query: 21 RPAQDSAFAVARFYQRG 71
RP +D AFAVARF+++G
Sbjct: 11 RPPEDVAFAVARFFEKG 61
>gb|CW249019.1|CW249019 104_710_11222618_148_35036_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222618, DNA
sequence
Length = 735
Score = 64.3 bits (134), Expect(2) = 4e-017
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = +2 / +1
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYGI 187
Y GGTNF RT GGP TSYDYDAPIDEYG+
Sbjct: 202 YHGGTNFGRTTGGPFITTSYDYDAPIDEYGL 294
Score = 52.4 bits (108), Expect = 6e-006
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = -1 / -2
Query: 183 PYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
PYSSIGAS*S*LV+ +GPP VR K VPP Y
Sbjct: 290 PYSSIGAS*S*LVVMNGPPVVRPKFVPP*Y 201
Score = 44.1 bits (90), Expect = 0.002
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -3 / -1
Query: 184 TIFVNWCIIIIASYLKWTTSCPLKIGSTKI 95
TIF+NWCII+IAS +W+ S KI +T I
Sbjct: 291 TIFINWCIIVIASCNEWSPSSATKICATMI 202
Score = 44.1 bits (90), Expect(2) = 4e-017
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2 / +3
Query: 182 GILRQPKWGHLKDLHAAIKLCESAL 256
G+ R PKW HL+DLH +I+LCE L
Sbjct: 375 GLRRFPKWAHLRDLHKSIRLCEHTL 449
Score = 40.9 bits (83), Expect = 0.016
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1 / +3
Query: 94 VFWWNQF*ADSWWSTSDN*L*L*CTN*RIWY 186
V WW++F + W + N*L*L*CTN* IW+
Sbjct: 201 VSWWHKFWSHYWGTIHYN*L*L*CTN**IWF 293
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -2 / -3
Query: 182 HIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
HI QLVHH+HS*L + Q QN H +T
Sbjct: 289 HIHQLVHHSHS*L**MVPQ*CDQNLCHHDT 200
Score = 31.8 bits (63), Expect = 9.3
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3 / +2
Query: 96 ILVEPILSGQLVVHFR*LAMIMMHQLTNMV 185
I+V IL L H LAM MMHQL NMV
Sbjct: 203 IMVAQILVALLGDHSLQLAMTMMHQLMNMV 292
>gb|CW180574.1|CW180574 104_595_11163021_148_36645_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163021, DNA
sequence
Length = 652
Score = 66.6 bits (139), Expect(2) = 6e-017
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2 / -1
Query: 86 YYMYFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
+ Y GGTNF+RT+GGP TSYDYDAPIDEYG
Sbjct: 247 FLQYHGGTNFDRTSGGPFIATSYDYDAPIDEYG 149
Score = 54.7 bits (113), Expect(2) = 2e-009
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -1 / +3
Query: 183 PYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
PYSSIGAS*S*LV +GPP VRSKLVPP Y
Sbjct: 150 PYSSIGAS*S*LVAMNGPPEVRSKLVPPWY 239
Score = 42.8 bits (87), Expect(2) = 6e-017
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3 / -3
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++PHRP +D AFAVARF Q+G ++
Sbjct: 503 GGAVPHRPVEDMAFAVARFIQKGGSF 426
Score = 29.0 bits (57), Expect(2) = 2e-009
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3 / +1
Query: 58 KRATAKALS*AGLCGNDSP 2
KRATAKA+S G CG P
Sbjct: 448 KRATAKAMSSTGRCGTAPP 504
>gb|CW359388.1|CW359388 fsbb001f026p23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f026p23, DNA
sequence
Length = 739
Score = 66.6 bits (139), Expect(2) = 7e-017
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2 / +3
Query: 86 YYMYFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
+ Y GGTNF+RT+GGP TSYDYDAPIDEYG
Sbjct: 594 FLQYHGGTNFDRTSGGPFIATSYDYDAPIDEYG 692
Score = 54.7 bits (113), Expect(2) = 3e-009
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -1 / -1
Query: 183 PYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
PYSSIGAS*S*LV +GPP VRSKLVPP Y
Sbjct: 691 PYSSIGAS*S*LVAMNGPPEVRSKLVPPWY 602
Score = 42.8 bits (87), Expect(2) = 7e-017
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++PHRP +D AFAVARF Q+G ++
Sbjct: 338 GGAVPHRPVEDMAFAVARFIQKGGSF 415
Score = 29.0 bits (57), Expect(2) = 3e-009
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3 / -2
Query: 58 KRATAKALS*AGLCGNDSP 2
KRATAKA+S G CG P
Sbjct: 393 KRATAKAMSSTGRCGTAPP 337
>gb|CL161336.1|CL161336 104_352_10805647_116_31827_319 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805647, DNA
sequence
Length = 645
Score = 61.1 bits (127), Expect(2) = 8e-016
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2 / +3
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTN +R++GGP TSYDYDAPIDEYG
Sbjct: 450 YHGGTNLDRSSGGPFIATSYDYDAPIDEYG 539
Score = 50.6 bits (104), Expect = 2e-005
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = -1 / -3
Query: 186 IPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+PYSS+GAS*S*LV GPP +RS+LVPP Y
Sbjct: 541 LPYSSMGAS*S*LVAMKGPPELRSRLVPP*Y 449
Score = 44.6 bits (91), Expect(2) = 8e-016
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAYK 83
G ++P+RP +D AFAVARFYQRG ++
Sbjct: 161 GGAVPYRPVEDLAFAVARFYQRGGTFQ 241
>gb|CW324269.1|CW324269 104_818_11477066_148_35909_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477066, DNA
sequence
Length = 689
Score = 61.1 bits (127), Expect(2) = 8e-016
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2 / +1
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTN +R++GGP TSYDYDAPIDEYG
Sbjct: 298 YHGGTNLDRSSGGPFIATSYDYDAPIDEYG 387
Score = 50.6 bits (104), Expect = 2e-005
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = -1 / -1
Query: 186 IPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+PYSS+GAS*S*LV GPP +RS+LVPP Y
Sbjct: 389 LPYSSMGAS*S*LVAMKGPPELRSRLVPP*Y 297
Score = 44.6 bits (91), Expect(2) = 8e-016
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAYK 83
G ++P+RP +D AFAVARFYQRG ++
Sbjct: 9 GGAVPYRPVEDLAFAVARFYQRGGTFQ 89
>gb|CW464276.1|CW464276 fsbb001f213g22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213g22, DNA
sequence
Length = 697
Score = 61.1 bits (127), Expect(2) = 8e-016
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2 / -1
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTN +R++GGP TSYDYDAPIDEYG
Sbjct: 232 YHGGTNLDRSSGGPFIATSYDYDAPIDEYG 143
Score = 50.6 bits (104), Expect = 2e-005
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = -1 / +3
Query: 186 IPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+PYSS+GAS*S*LV GPP +RS+LVPP Y
Sbjct: 141 LPYSSMGAS*S*LVAMKGPPELRSRLVPP*Y 233
Score = 44.6 bits (91), Expect(2) = 8e-016
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +3 / -3
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAYK 83
G ++P+RP +D AFAVARFYQRG ++
Sbjct: 521 GGAVPYRPVEDLAFAVARFYQRGGTFQ 441
>gb|CW164439.1|CW164439 104_572_11151990_116_36464_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151990, DNA
sequence
Length = 708
Score = 62.5 bits (130), Expect(2) = 5e-015
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2 / +1
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF RT+GGP TSYDYDAP+DEYG
Sbjct: 190 YHGGTNFGRTSGGPYITTSYDYDAPLDEYG 279
Score = 51.5 bits (106), Expect(2) = 2e-010
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / -2
Query: 192 LKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+ +PYSS GAS*S*LV+ GPP VR KLVPP Y
Sbjct: 287 INLPYSSKGAS*S*LVVMYGPPEVRPKLVPPWY 189
Score = 39.1 bits (79), Expect(2) = 5e-015
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2 / +1
Query: 182 GILRQPKWGHLKDLHAAIKLCESAL 256
G +RQPK+GHLKDLH +K E L
Sbjct: 400 GNIRQPKYGHLKDLHNLLKSMEKIL 474
Score = 34.5 bits (69), Expect(2) = 2e-010
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 255 RADSQSLIAACRSFKCPHLGCLKIP 181
R S L RSF+CP+LGCL +P
Sbjct: 473 RIFSMDLSKLWRSFRCPYLGCLMLP 399
Score = 33.1 bits (66), Expect = 3.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1 / +3
Query: 85 LLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
++ V W NQF WW N L*L C R+W
Sbjct: 180 IIIVPWRNQFRTHFWWPVHHNQL*LRCAFGRVW 278
Score = 32.2 bits (64), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2 / -3
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
YH R H +HS L HQ +NWF T
Sbjct: 280 YHTRPKAHRSHSWL*CTGHQKCVRNWFLHGT 188
>gb|CW255156.1|CW255156 104_719_11226074_148_35129_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226074, DNA
sequence
Length = 773
Score = 67.0 bits (140), Expect(2) = 2e-014
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = +2 / -2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQT 520
C+AFLANID +V G+ Y LP WSVSILPDC+ V NTA+V T
Sbjct: 478 CAAFLANIDGQSDKTVTFNGRMYRLPAWSVSILPDCKNVVLNTAQVHITT 329
Score = 35.9 bits (72), Expect = 0.53
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1 / +3
Query: 519 VCVPTLAVLKATVSQSGSMLTDHGGRL 439
V + T AVL T QSG MLTDH G L
Sbjct: 330 VVICTCAVLSTTFLQSGRMLTDHAGSL 410
Score = 34.5 bits (69), Expect(2) = 2e-014
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2 / -1
Query: 212 LKDLHAAIKLCESALTAVDGS 274
L+D+H AIKLCE AL A D S
Sbjct: 773 LRDVHKAIKLCEPALIATDPS 711
>gb|CW321806.1|CW321806 104_815_11475751_116_35947_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475751, DNA
sequence
Length = 626
Score = 50.6 bits (104), Expect(2) = 1e-013
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +2 / +1
Query: 182 GILRQPKWGHLKDLHAAIKLCESAL 256
G+ ++PKWGHL+DLH A+KLC+ AL
Sbjct: 19 GLYKEPKWGHLRDLHLALKLCKKAL 93
Score = 46.0 bits (94), Expect(2) = 1e-013
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQ 517
C AFL+N + ++ G+ Y +P S+SIL DC+TV F T V Q
Sbjct: 172 CVAFLSNHNTKDDVTLTFRGQPYFVPRHSISILADCKTVVFGTQHVNAQ 318
>gb|CW097409.1|CW097409 104_463_11002440_148_34357_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002440, DNA
sequence
Length = 455
Score = 73.5 bits (154), Expect = 3e-012
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = +2 / -2
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGSP 550
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A V + F + S
Sbjct: 364 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVSFTFAYFQYGTFSS 185
Query: 551 S 553
S
Sbjct: 184 S 182
Score = 35.4 bits (71), Expect = 0.73
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -1 / +3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL 439
T+A+LK T QSG ML D GGRL
Sbjct: 228 TVALLKTTFLQSGRMLIDQGGRL 296
>gb|CW156784.1|CW156784 104_559_11146874_148_36377_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146874, DNA
sequence
Length = 670
Score = 73.5 bits (154), Expect = 3e-012
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = +2 / -1
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTSXFNVESGSP 550
C+AFLAN + + YA V + YSLPPWS+SILPDC+ V FN+A V + F + S
Sbjct: 478 CAAFLANYNSNSYAKVVFNNEQYSLPPWSISILPDCKNVVFNSATVSFTFAYFQYGTFSS 299
Query: 551 S 553
S
Sbjct: 298 S 296
Score = 35.4 bits (71), Expect = 0.73
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -1 / +3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL 439
T+A+LK T QSG ML D GGRL
Sbjct: 342 TVALLKTTFLQSGRMLIDQGGRL 410
>gb|CW434526.1|CW434526 fsbb001f150e08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150e08, DNA
sequence
Length = 618
Score = 62.5 bits (130), Expect(2) = 6e-012
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2 / -2
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF RT+GGP TSYDYDAP+DEYG
Sbjct: 218 YHGGTNFGRTSGGPYITTSYDYDAPLDEYG 129
Score = 51.5 bits (106), Expect = 1e-005
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +1
Query: 192 LKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+ +PYSS GAS*S*LV+ GPP VR KLVPP Y
Sbjct: 121 INLPYSSKGAS*S*LVVMYGPPEVRPKLVPPWY 219
Score = 33.1 bits (66), Expect = 3.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1 / -1
Query: 85 LLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
++ V W NQF WW N L*L C R+W
Sbjct: 228 IIIVPWRNQFRTHFWWPVHHNQL*LRCAFGRVW 130
Score = 32.2 bits (64), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2 / +2
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
YH R H +HS L HQ +NWF T
Sbjct: 128 YHTRPKAHRSHSWL*CTGHQKCVRNWFLHGT 220
Score = 29.9 bits (59), Expect(2) = 6e-012
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3 / -2
Query: 18 HRPAQDSAFAVARFYQR 68
HR A+D AFAVA F+Q+
Sbjct: 425 HRSAEDIAFAVAMFFQK 375
>gb|CW434793.1|CW434793 fsbb001f150k14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150k14, DNA
sequence
Length = 751
Score = 62.5 bits (130), Expect(2) = 8e-012
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2 / -3
Query: 95 YFGGTNFERTAGGPLQITSYDYDAPIDEYG 184
Y GGTNF RT+GGP TSYDYDAP+DEYG
Sbjct: 218 YHGGTNFGRTSGGPYITTSYDYDAPLDEYG 129
Score = 51.5 bits (106), Expect = 1e-005
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +1
Query: 192 LKIPYSSIGAS*S*LVI*SGPPAVRSKLVPPKY 94
+ +PYSS GAS*S*LV+ GPP VR KLVPP Y
Sbjct: 121 INLPYSSKGAS*S*LVVMYGPPEVRPKLVPPWY 219
Score = 33.1 bits (66), Expect = 3.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1 / -2
Query: 85 LLHVFWWNQF*ADSWWSTSDN*L*L*CTN*RIW 183
++ V W NQF WW N L*L C R+W
Sbjct: 228 IIIVPWRNQFRTHFWWPVHHNQL*LRCAFGRVW 130
Score = 32.2 bits (64), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2 / +2
Query: 185 YHIRQLVHHNHS*LSEVDHQLSAQNWFHQNT 93
YH R H +HS L HQ +NWF T
Sbjct: 128 YHTRPKAHRSHSWL*CTGHQKCVRNWFLHGT 220
Score = 29.9 bits (59), Expect(2) = 8e-012
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3 / -3
Query: 18 HRPAQDSAFAVARFYQR 68
HR A+D AFAVA F+Q+
Sbjct: 425 HRSAEDIAFAVAMFFQK 375
>gb|CW255155.1|CW255155 104_719_11226074_116_35125_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226074, DNA
sequence
Length = 741
Score = 61.6 bits (128), Expect(3) = 9e-012
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2 / +3
Query: 173 DEYGILRQPKWGHLKDLHAAIKLCESALTAVDGS 274
D+ G++R+PKWGHL+D+H AIKLCE AL A D S
Sbjct: 312 DDSGLVREPKWGHLRDVHKAIKLCEPALIATDPS 413
Score = 40.0 bits (81), Expect = 0.031
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = -1 / -3
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIPYSS 172
S A+ A SQSL+A C S K PH G L P SS
Sbjct: 406 SVAMSAGSQSLMALCTSLKWPHFGSLTSPESS 311
Score = 25.8 bits (50), Expect(3) = 9e-012
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2 / +3
Query: 428 GKSYSLPPWSVSI 466
G+ Y LP WSVSI
Sbjct: 702 GRMYRLPAWSVSI 740
Score = 22.1 bits (42), Expect(3) = 9e-012
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / +1
Query: 371 CSAFLANIDEHKYASVWIFGK 433
C+AFL NID +V G+
Sbjct: 646 CAAFLGNIDGQSDKTVTSMGE 708
>gb|CW053221.1|CW053221 104_293_10515842_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515842, DNA
sequence
Length = 579
Score = 48.3 bits (99), Expect(2) = 2e-010
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = +2 / +2
Query: 434 SYSLPPWSVSILPDCETVAFNTARV 508
++ +P WSVSILPDC+TVA+NTA+V
Sbjct: 308 THLVPAWSVSILPDCKTVAYNTAKV 382
Score = 39.1 bits (79), Expect(2) = 2e-010
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2 / +2
Query: 182 GILRQPKWGHLKDLHAAIKLCESAL 256
G +RQPK+GHLKDLH +K E L
Sbjct: 5 GNIRQPKYGHLKDLHNLLKSMEKIL 79
Score = 36.8 bits (74), Expect(2) = 9e-006
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1 / -1
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQ 370
T AVL ATV QSG MLTDH G * ++ + + +L ++ E+
Sbjct: 381 TFAVL*ATVLQSGKMLTDHAGTR*VPARVTFTSLSSNWLLMKQTEE 244
Score = 34.5 bits (69), Expect(2) = 9e-006
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1 / -1
Query: 255 RADSQSLIAACRSFKCPHLGCLKIP 181
R S L RSF+CP+LGCL +P
Sbjct: 78 RIFSMDLSKLWRSFRCPYLGCLMLP 4
>gb|CD213826.1|CD213826 HS1_53_D07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_53_D07_A012 5', mRNA sequence
Length = 670
Score = 64.3 bits (134), Expect(2) = 5e-010
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +2 / +1
Query: 359 NSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
+S C+AFL+N + A V G+ Y LP WS+S+LPDC T FNTA V + ++
Sbjct: 82 SSGACAAFLSNYHTNAAARVVFNGRRYDLPAWSISVLPDCRTAVFNTATVSSPSA 246
Score = 35.0 bits (70), Expect = 1.0
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = -1 / -3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEA 409
T+AVL V QSGS L DH GR * P T A
Sbjct: 230 TVAVLNTAVLQSGSTLMDHAGRS*RRPLNTTRA 132
Score = 21.7 bits (41), Expect(2) = 5e-010
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2 / +1
Query: 263 VDGSPHYVKLGPMQEAHVYSSEN 331
V G P +G ++A+VY S +
Sbjct: 19 VSGDPTIQTIGNYEKAYVYKSSS 87
>gb|CW249018.1|CW249018 104_710_11222618_116_35040_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222618, DNA
sequence
Length = 721
Score = 65.7 bits (137), Expect = 6e-010
Identities = 29/52 (55%), Positives = 31/52 (59%)
Frame = +2 / -1
Query: 353 SGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARV 508
S S C AFLANID V + Y LP WSVSILPDC V FNTA+V
Sbjct: 394 SDQSGGCVAFLANIDSANDKVVTFRNRQYDLPAWSVSILPDCRNVVFNTAKV 239
Score = 34.1 bits (68), Expect = 1.9
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = -1 / +3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKA 376
T AVL T QSG +LTD GR + T L S+ AR A
Sbjct: 240 TFAVLNTTFLQSGRILTDQAGRSYCLLRKVTTLSLAESIFARNA 371
>gb|CW435955.1|CW435955 fsbb001f152f15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152f15, DNA
sequence
Length = 529
Score = 65.2 bits (136), Expect = 8e-010
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +2 / -3
Query: 371 CSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQT 520
C+AFLANI+ +V G+ Y LP WSVSILPDC+ V NTA+V T
Sbjct: 491 CAAFLANIEGQSDKTVTFNGRMYRLPAWSVSILPDCKNVVLNTAQVHITT 342
Score = 35.9 bits (72), Expect = 0.53
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1 / +1
Query: 519 VCVPTLAVLKATVSQSGSMLTDHGGRL 439
V + T AVL T QSG MLTDH G L
Sbjct: 343 VVICTCAVLSTTFLQSGRMLTDHAGSL 423
>gb|CW460605.1|CW460605 fsbb001f207o02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207o02, DNA
sequence
Length = 601
Score = 64.3 bits (134), Expect = 1e-009
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +2 / -1
Query: 359 NSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
+S C+AFL+N + A V G+ Y LP WS+S+LPDC T FNTA V + ++
Sbjct: 472 SSGACAAFLSNYHTNAAARVVFNGRRYDLPAWSISVLPDCRTAVFNTATVSSPSA 308
Score = 35.0 bits (70), Expect = 1.0
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = -1 / +3
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEA 409
T+AVL V QSGS L DH GR * P T A
Sbjct: 324 TVAVLNTAVLQSGSTLMDHAGRS*RRPLNTTRA 422
>gb|CW290801.1|CW290801 104_770_11413210_148_35562_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413210, DNA
sequence
Length = 643
Score = 61.1 bits (127), Expect = 1e-008
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +2 / +2
Query: 167 PIDEYGILRQPKWGHLKDLHAAIKLCESALTAVD 268
P G+LR+PKWGHLK+LH AIKLCE AL A D
Sbjct: 332 PFTSSGLLREPKWGHLKELHKAIKLCEPALVAGD 433
Score = 40.5 bits (82), Expect = 0.022
Identities = 18/29 (62%), Positives = 18/29 (62%)
Frame = -1 / -2
Query: 267 STAVRADSQSLIAACRSFKCPHLGCLKIP 181
S A A SQSLIA C SFK PH G L P
Sbjct: 432 SPATNAGSQSLIALCNSFK*PHFGSLSKP 346
>gb|BZ627648.1|BZ627648 ih54a08.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih54a08 5', DNA sequence
Length = 604
Score = 59.7 bits (124), Expect = 4e-008
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2 / -2
Query: 359 NSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCETVAFNTARVGTQTS 523
+S C+AFL+N + A V G+ Y L WS+S+LPDC T FNTA V + ++
Sbjct: 588 SSGACAAFLSNYHTNGAARVVFNGRRYDLXAWSISVLPDCRTAVFNTATVSSPSA 424
Score = 31.8 bits (63), Expect = 9.3
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = -1 / +2
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEA 409
T+AVL V QSGS L DH R * P T A
Sbjct: 440 TVAVLNTAVLQSGSTLMDHAXRS*RRPLNTTRA 538
>gb|CW097408.1|CW097408 104_463_11002440_116_34345_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002440, DNA
sequence
Length = 539
Score = 35.4 bits (71), Expect(2) = 7e-006
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +2 / +3
Query: 95 YFGGTNFERTAGGPLQITS 151
Y GGTNF RTAGGP TS
Sbjct: 483 YHGGTNFGRTAGGPFITTS 539
Score = 35.0 bits (70), Expect(2) = 7e-006
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3 / +1
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++ RP +D AFAVARF Q+G ++
Sbjct: 292 GGTIRQRPVEDLAFAVARFVQKGGSF 369
Score = 32.7 bits (65), Expect = 4.9
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1 / -2
Query: 150 LVI*SGPPAVRSKLVPPKY 94
LV+ GPPAVR K VPP Y
Sbjct: 538 LVVMKGPPAVRPKFVPP*Y 482
>gb|BE125108.1|BE125108 DG1_16_F11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 51.9 bits (107), Expect = 8e-006
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +2 / +3
Query: 503 RVGTQTSXFNVESGSPSYSSRHKPRILS 586
R T FNVESGSPSYSSRHKPRILS
Sbjct: 6 RERTSLEFFNVESGSPSYSSRHKPRILS 89
Score = 51.0 bits (105), Expect = 1e-005
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -1 / -3
Query: 588 RDRILGLCLLE*LGDPDSTLKXDVCVPTL 502
RDRILGLCLLE*LGDPDSTLK V +L
Sbjct: 91 RDRILGLCLLE*LGDPDSTLKNSRLVLSL 5
Score = 48.3 bits (99), Expect = 1e-004
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -2 / -1
Query: 587 GIEF*VYAYLNSWGTQIRH*KXMFVYQP 504
GIEF* Y YLN+WGTQIRH*K + P
Sbjct: 90 GIEF*AYVYLNNWGTQIRH*KTRD*FSP 7
Score = 43.7 bits (89), Expect = 0.002
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3 / +1
Query: 525 FSMSNLGPPAIQVGINLEFYP 587
F MSNLGPP IQV I+LEFYP
Sbjct: 28 FLMSNLGPPVIQVDISLEFYP 90
Score = 42.3 bits (86), Expect = 0.006
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +1 / +2
Query: 526 FQCRIWVPQLFK*A*T*NSIP 588
F CRIWVPQLFK* * *NSIP
Sbjct: 29 F*CRIWVPQLFK*T*A*NSIP 91
Score = 38.2 bits (77), Expect = 0.11
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3 / -2
Query: 586 G*NSRFMPT*IAGGPRFDIE 527
G*NSR M T*I GGPRFDI+
Sbjct: 89 G*NSRLMST*ITGGPRFDIK 30
>gb|CW032345.1|CW032345 104_261_10501323_115_30364 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501323, DNA
sequence
Length = 645
Score = 48.3 bits (99), Expect = 1e-004
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = +2 / -2
Query: 434 SYSLPPWSVSILPDCETVAFNTARV 508
++ +P WSVSILPDC+TVA+NTA+V
Sbjct: 473 THLVPAWSVSILPDCKTVAYNTAKV 399
Score = 36.8 bits (74), Expect = 0.28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1 / +1
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQ 370
T AVL ATV QSG MLTDH G * ++ + + +L ++ E+
Sbjct: 400 TFAVL*ATVLQSGKMLTDHAGTR*VPARVTFTSLSSNWLLMKQTEE 537
>gb|CW164440.1|CW164440 104_572_11151990_148_36463_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151990, DNA
sequence
Length = 663
Score = 48.3 bits (99), Expect = 1e-004
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = +2 / -2
Query: 434 SYSLPPWSVSILPDCETVAFNTARV 508
++ +P WSVSILPDC+TVA+NTA+V
Sbjct: 413 THLVPAWSVSILPDCKTVAYNTAKV 339
Score = 36.8 bits (74), Expect = 0.28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1 / +1
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQ 370
T AVL ATV QSG MLTDH G * ++ + + +L ++ E+
Sbjct: 340 TFAVL*ATVLQSGKMLTDHAGTR*VPARVTFTSLSSNWLLMKQTEE 477
>gb|CW497111.1|CW497111 fsbb001f289k23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289k23, DNA
sequence
Length = 725
Score = 28.6 bits (56), Expect(3) = 4e-004
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3 / -1
Query: 3 GESLPHRPAQDSAFAVARFYQRG 71
G+ R A+D AFAVARF+ G
Sbjct: 449 GDPPSQRSAEDIAFAVARFFSVG 381
Score = 27.2 bits (53), Expect(3) = 4e-004
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2 / -3
Query: 83 NYYMYFGGTNFERTAGGPLQITSYD 157
N Y GGTNF RTA + YD
Sbjct: 243 NSEQYHGGTNFGRTAAAFVMPKYYD 169
Score = 26.7 bits (52), Expect(3) = 4e-004
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 182 GILRQPKWGHL 214
G+ ++PKWGHL
Sbjct: 34 GLYKEPKWGHL 2
>gb|CW435954.1|CW435954 fsbb001f152f15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152f15, DNA
sequence
Length = 545
Score = 43.7 bits (89), Expect = 0.002
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARFYQRG 71
G ++P+RP +D AFAVARFYQRG
Sbjct: 408 GGAVPYRPVEDLAFAVARFYQRG 476
>gb|CL184249.1|CL184249 104_397_10898729_114_32380_073 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898729, DNA
sequence
Length = 653
Score = 42.8 bits (87), Expect = 0.005
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++PHRP +D AFAVARF Q+G ++
Sbjct: 377 GGAVPHRPVEDMAFAVARFIQKGGSF 454
>gb|CW078918.1|CW078918 104_397_10898729_114_32360_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898729, DNA
sequence
Length = 624
Score = 42.8 bits (87), Expect = 0.005
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3 / +1
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++PHRP +D AFAVARF Q+G ++
Sbjct: 376 GGAVPHRPVEDMAFAVARFIQKGGSF 453
>gb|CW147899.1|CW147899 104_542_11140132_116_35001_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140132, DNA
sequence
Length = 665
Score = 42.8 bits (87), Expect = 0.005
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3 / -2
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G ++PHRP +D AFAVARF Q+G ++
Sbjct: 244 GGAVPHRPVEDMAFAVARFIQKGGSF 167
>gb|CL165855.1|CL165855 104_361_10808954_116_31821_170 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808954, DNA
sequence
Length = 727
Score = 42.3 bits (86), Expect = 0.006
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +2 / +3
Query: 434 SYSLPPWSVSILPDCETVAFNTARV 508
++ +P SVSILPDC+TVA+NTA+V
Sbjct: 81 THLVPACSVSILPDCKTVAYNTAKV 155
Score = 35.0 bits (70), Expect = 1.0
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -1 / -1
Query: 507 TLAVLKATVSQSGSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQ 370
T AVL ATV QSG MLT+H G * ++ + + +L ++ E+
Sbjct: 154 TFAVL*ATVLQSGKMLTEHAGTR*VPARVTFTSLSSNWLLMKQTEE 17
>gb|BZ627647.1|BZ627647 ih54a08.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih54a08 5', DNA sequence
Length = 420
Score = 41.8 bits (85), Expect = 0.009
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 3 GESLPHRPAQDSAFAVARFYQRG 71
G ++PHRP +D AFAVARF Q+G
Sbjct: 347 GGAVPHRPVEDMAFAVARFIQKG 415
>gb|CW488731.1|CW488731 fsbb001f265e17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265e17, DNA
sequence
Length = 647
Score = 38.2 bits (77), Expect = 0.11
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2 / +2
Query: 428 GKSYSLPPWSVSILPDCETVAFNTARVGTQ 517
G+ Y +P S+SIL DC+TV F T V Q
Sbjct: 95 GQPYFVPRHSISILADCKTVVFGTQHVNAQ 184
>gb|BF585645.1|BF585645 FM1_23_H04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 469
Score = 36.8 bits (74), Expect = 0.28
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3 / +1
Query: 3 GESLPHRPAQDSAFAVARFYQR 68
GES PHRP +D AFAV F+++
Sbjct: 403 GESNPHRPPEDVAFAVGTFFEK 468
>gb|CN129891.1|CN129891 RHOH1_38_C05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_C05_A002 3', mRNA sequence
Length = 834
Score = 36.3 bits (73), Expect = 0.39
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3 / +3
Query: 3 GESLPHRPAQDSAFAVARFYQRGEAY 80
G +PHRP +D A+ VA+F Q+G ++
Sbjct: 606 GIPVPHRPVEDLAYGVAKFIQKGGSF 683
>gb|CL170042.1|CL170042 104_370_10813487_148_31788_191 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813487, DNA
sequence
Length = 707
Score = 35.0 bits (70), Expect = 1.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / -2
Query: 125 LSAQNWFHQNTCNNFVSFPTLI 60
+S NWFHQ+ C N VS P ++
Sbjct: 469 ISGSNWFHQSICRNEVSKPNIL 404
>gb|CW128908.1|CW128908 104_510_11114273_116_34756_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114273, DNA
sequence
Length = 647
Score = 35.0 bits (70), Expect = 1.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2 / +2
Query: 125 LSAQNWFHQNTCNNFVSFPTLI 60
+S NWFHQ+ C N VS P ++
Sbjct: 335 ISGSNWFHQSICRNEVSKPNIL 400
>gb|CW456334.1|CW456334 fsbb001f201k01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201k01, DNA
sequence
Length = 373
Score = 34.5 bits (69), Expect = 1.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2 / -3
Query: 428 GKSYSLPPWSVSILPD 475
GK+Y LPPW S+LPD
Sbjct: 125 GKNYDLPPWHASMLPD 78
>gb|CL177206.1|CL177206 104_384_10893678_116_31916_126 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893678, DNA
sequence
Length = 749
Score = 34.1 bits (68), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2 / -2
Query: 434 IFQKSRLKHIYVHQCWQEKLSKTVNF 357
+F K KH+Y H+C + LS T+NF
Sbjct: 424 VFDKYHSKHMYHHECTNKLLSLTMNF 347
>gb|BZ626819.1|BZ626819 ih48e10.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih48e10 5', DNA sequence
Length = 751
Score = 33.6 bits (67), Expect = 2.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2 / -1
Query: 380 KLSKTVNFLKCFHLCGHFHWNTHVPPAWALILHNEVNHLL 261
K + F CFH C H H + PP L +++ H+L
Sbjct: 454 KEQSRIRFAPCFHSCHHLHHS*PYPPHTPLHIYSTHMHIL 335
>gb|BZ331206.1|BZ331206 hw07a08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw07a08 5', DNA sequence
Length = 457
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2 / -3
Query: 452 MVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVPPAWALI 288
M ++Y F KSR+KHI + +CW + +++ H G P W I
Sbjct: 293 M*INYDCFLKSRIKHIPMGKCWFSESHPHISWSPNSHQLGSMQLFLDDFPFWGHI 129
>gb|BZ331343.1|BZ331343 hw07h11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw07h11 5', DNA sequence
Length = 637
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2 / -2
Query: 452 MVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVPPAWALI 288
M ++Y F KSR+KHI + +CW + +++ H G P W I
Sbjct: 303 M*INYDCFLKSRIKHIPMGKCWFSESHPHISWSPNSHQLGSMQLFLDDFPFWGHI 139
>gb|CW256237.1|CW256237 104_721_11226680_116_35139_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226680, DNA
sequence
Length = 664
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2 / +2
Query: 452 MVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVPPAWALI 288
M ++Y F KSR+KHI + +CW + +++ H G P W I
Sbjct: 488 M*INYDCFLKSRIKHIPMGKCWFSESHPHISWSPNSHQLGSMQLFLDDFPFWGHI 652
>gb|CW256238.1|CW256238 104_721_11226680_148_35143_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226680, DNA
sequence
Length = 663
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2 / -1
Query: 452 MVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVPPAWALI 288
M ++Y F KSR+KHI + +CW + +++ H G P W I
Sbjct: 411 M*INYDCFLKSRIKHIPMGKCWFSESHPHISWSPNSHQLGSMQLFLDDFPFWGHI 247
>gb|CW350420.1|CW350420 fsbb001f011l14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f011l14, DNA
sequence
Length = 691
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2 / +3
Query: 452 MVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVPPAWALI 288
M ++Y F KSR+KHI + +CW + +++ H G P W I
Sbjct: 510 M*INYDCFLKSRIKHIPMGKCWFSESHPHISWSPNSHQLGSMQLFLDDFPFWGHI 674
>gb|CW391358.1|CW391358 fsbb001f077h10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077h10, DNA
sequence
Length = 760
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2 / +2
Query: 452 MVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVPPAWALI 288
M ++Y F KSR+KHI + +CW + +++ H G P W I
Sbjct: 374 M*INYDCFLKSRIKHIPMGKCWFSESHPHISWSPNSHQLGSMQLFLDDFPFWGHI 538
>gb|CW401140.1|CW401140 fsbb001f091m20k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f091m20, DNA
sequence
Length = 475
Score = 33.1 bits (66), Expect = 3.6
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -3
Query: 3 GESLPHRPAQDSAFAVARF 59
G ++P+RP +D AFAVARF
Sbjct: 62 GGAVPYRPVEDLAFAVARF 6
>gb|CW495230.1|CW495230 fsbb001f286o11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286o11, DNA
sequence
Length = 797
Score = 33.1 bits (66), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2 / +1
Query: 452 MVVDYKIFQKSRLKHIYVHQCWQEKLSKTVNFLKCFHLCGHFHWNTHVPPAWALI 288
M ++Y F KSR+KHI + +CW + +++ H G P W I
Sbjct: 334 M*INYDCFLKSRIKHIPMGKCWFSESHPHISWSPNSHQLGSMQLFLDDFPFWGHI 498
>gb|CW104675.1|CW104675 104_473_11012557_116_34442_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012557, DNA
sequence
Length = 604
Score = 32.7 bits (65), Expect = 4.9
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -3 / +1
Query: 169 WCIIIIASYLKWTTSC 122
WC+++++SY W T+C
Sbjct: 511 WCVLLLSSYYSWRTTC 558
>gb|CW125049.1|CW125049 104_505_11112122_116_34716_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112122, DNA
sequence
Length = 678
Score = 32.7 bits (65), Expect = 4.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2 / +3
Query: 458 QTMVVDYKIFQKSRLKHIYVHQCW 387
+ ++V ++ S KH YVH CW
Sbjct: 600 EVVIVSISLYTNSLTKHYYVHMCW 671
>gb|CW262491.1|CW262491 104_730_11230099_116_35223_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230099, DNA
sequence
Length = 537
Score = 32.7 bits (65), Expect = 4.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1 / -2
Query: 253 SYCSRWFTSLCKIRAHAGGTCV 318
+YCS WF C + HAG TC+
Sbjct: 407 TYCSSWF*QWCWLM*HAGHTCL 342
>gb|CW303439.1|CW303439 104_788_11465239_148_35695_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465239, DNA
sequence
Length = 746
Score = 24.9 bits (48), Expect(2) = 5.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1 / -1
Query: 384 RKAEQNCEFPEMLPFVWTFSL 322
RK NC+ + P +W F L
Sbjct: 323 RKVSSNCKSVILSPILWNFEL 261
Score = 24.9 bits (48), Expect(2) = 5.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1 / -2
Query: 471 GSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNCEF 358
G+++TD GGR+ + E Y+ +S+ A + + EF
Sbjct: 451 GNLITDQGGRIIIIYVVVVE*YVRASLSAPLSLHSREF 338
>gb|CW413415.1|CW413415 fsbb001f112i20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112i20, DNA
sequence
Length = 658
Score = 24.9 bits (48), Expect(2) = 5.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1 / -1
Query: 384 RKAEQNCEFPEMLPFVWTFSL 322
RK NC+ + P +W F L
Sbjct: 472 RKVSSNCKSVILSPILWNFEL 410
Score = 24.9 bits (48), Expect(2) = 5.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1 / -2
Query: 471 GSMLTDHGGRL*DFPKIQTEAYLCSSMLARKAEQNCEF 358
G+++TD GGR+ + E Y+ +S+ A + + EF
Sbjct: 600 GNLITDQGGRIIIIYVVVVE*YVRASLSAPLSLHSREF 487
>gb|BZ329532.1|BZ329532 hv86e02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv86e02 5', DNA sequence
Length = 713
Score = 32.2 bits (64), Expect = 6.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2 / +2
Query: 380 KLSKTVNFLKCFHLCGHFHWNTHVPPAWALILHNEVNHLL 261
K V F CFH C H H PP L +++ H+L
Sbjct: 551 KEQSRVRFQPCFHSCHHLHHP*PYPPHTPLHIYSTHMHIL 670
>gb|CL149597.1|CL149597 104_330_10777933_114_31353_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777933, DNA
sequence
Length = 735
Score = 32.2 bits (64), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2 / -3
Query: 119 RTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVDG 271
R AGGPL++ + P+ + G L + + GH++ + +L VDG
Sbjct: 424 RPAGGPLELKNTRGRTPVLDIGALARIRSGHIQIVPGIKRLFRGGAELVDG 272
>gb|CL149598.1|CL149598 104_330_10777933_116_31354_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777933, DNA
sequence
Length = 738
Score = 32.2 bits (64), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2 / +1
Query: 119 RTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVDG 271
R AGGPL++ + P+ + G L + + GH++ + +L VDG
Sbjct: 412 RPAGGPLELKNTRGRTPVLDIGALARIRSGHIQIVPGIKRLFRGGAELVDG 564
>gb|CW489665.1|CW489665 fsbb001f274l14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274l14, DNA
sequence
Length = 602
Score = 32.2 bits (64), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / +1
Query: 368 TVNFLKCFHLCGHFHWNTHV 309
T L C++L +FHW THV
Sbjct: 496 TYGHLVCYYLTWYFHWKTHV 555
>gb|CD227282.1|CD227282 CCC1_50_G02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_50_G02_A007 3', mRNA sequence
Length = 527
Score = 32.2 bits (64), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2 / +3
Query: 119 RTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVDG 271
R AGGPL++ + P+ + G L + + GH++ + +L VDG
Sbjct: 192 RPAGGPLELKNARGRTPVLDIGALARIRSGHIQIVPGIKRLFRGGAELVDG 344
>gb|CF486359.1|CF486359 POL1_37_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_37_F05_A002 3', mRNA sequence
Length = 666
Score = 27.6 bits (54), Expect(2) = 8.2
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -3 / -3
Query: 556 IAGGPRFDIEXRCLCTNPGCIKSHSFTVW*YAHRPWW 446
+ G ++ L +PGC SH W + + PW+
Sbjct: 310 LCSGCSSNLHFHSLHIHPGCNHSHHNHXWLWPYPPWF 200
Score = 23.1 bits (44), Expect(2) = 8.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -2 / -2
Query: 227 HVGLSNAPT*VVLRYHIRQLVHHNH 153
H+G+ + HI +HHNH
Sbjct: 173 HLGVHTHHNLLGYHIHIHHSLHHNH 99
>gb|CW137197.1|CW137197 104_523_11119163_116_34868_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119163, DNA
sequence
Length = 569
Score = 31.8 bits (63), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 38 CFCCCSFLSTW 70
CFCCCS +STW
Sbjct: 535 CFCCCS*VSTW 567
Score = 31.8 bits (63), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 38 CFCCCSFLSTW 70
CFCCCS +STW
Sbjct: 498 CFCCCS*VSTW 530
>gb|CW137198.1|CW137198 104_523_11119163_148_34864_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119163, DNA
sequence
Length = 643
Score = 31.8 bits (63), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +1
Query: 38 CFCCCSFLSTW 70
CFCCCS +STW
Sbjct: 595 CFCCCS*VSTW 627
Score = 31.8 bits (63), Expect = 9.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 38 CFCCCSFLSTW 70
CFCCCS +STW
Sbjct: 558 CFCCCS*VSTW 590
>gb|CW275332.1|CW275332 104_748_11404907_116_35378_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404907, DNA
sequence
Length = 703
Score = 31.8 bits (63), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2 / +1
Query: 38 CFCCCSFLSTWGSLQNYYMYFGGTN 112
C CCC + ++W S + + Y GG N
Sbjct: 289 CCCCCRWEASWASGRAVFSYPGGGN 363
>gb|CW433400.1|CW433400 fsbb001f148j13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148j13, DNA
sequence
Length = 780
Score = 31.8 bits (63), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2 / +2
Query: 431 FQKSRLKHIYVHQCWQEKLS 372
F + LKHIY+ CW+ +LS
Sbjct: 257 FHQKTLKHIYIPGCWRHQLS 316
>gb|CN148689.1|CN148689 WOUND1_58_E03.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_58_E03_A002 3', mRNA sequence
Length = 758
Score = 31.8 bits (63), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2 / -1
Query: 350 CFHLCGHFHWNTHVPPAWAL 291
CF +CGHF+W++ A AL
Sbjct: 416 CFCICGHFYWHSSCNAAQAL 357
>gb|CW198652.1|CW198652 104_623_11183088_116_36848_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183088, DNA
sequence
Length = 736
Score = 24.4 bits (47), Expect(2) = 9.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3 / -2
Query: 297 PCRRHMCIPVK 329
PCRRH C P +
Sbjct: 486 PCRRHRCRPCR 454
Score = 24.4 bits (47), Expect(2) = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2 / -3
Query: 125 AGGPLQITSYDYDAPIDEYGILRQPKWGHL 214
AGGPL++ P+ +YG L + + G +
Sbjct: 560 AGGPLELKEKYGRTPVLDYGALARIRAGDI 471
>gb|CW238450.1|CW238450 104_695_11216737_148_37524_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216737, DNA
sequence
Length = 637
Score = 24.4 bits (47), Expect(2) = 10.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3 / -2
Query: 297 PCRRHMCIPVK 329
PCRRH C P +
Sbjct: 162 PCRRHRCRPCR 130
Score = 24.4 bits (47), Expect(2) = 10.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2 / -3
Query: 125 AGGPLQITSYDYDAPIDEYGILRQPKWGHL 214
AGGPL++ P+ +YG L + + G +
Sbjct: 236 AGGPLELKEKYGRTPVLDYGALARIRAGDI 147
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 814,886,171
Number of Sequences: 832831
Number of extensions: 12573442
Number of successful extensions: 104019
Number of sequences better than 10.0: 116
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16989804846
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)