TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF190881.1| Populus tremula x Populus tremuloides PIN1-l... 118 1e-026
gb|AF515435.1| Populus tremula x Populus tremuloides PIN1-l... 117 3e-026
gb|AF515434.1| Populus tremula x Populus tremuloides PIN1-l... 112 7e-025
gb|AY302060.1| Populus tomentosa PIN1-like protein mRNA, co... 109 7e-024
gb|AY496447.1| Populus tomentosa putative auxin efflux carr... 105 2e-022
>gb|AF190881.1| Populus tremula x Populus tremuloides PIN1-like auxin transport
protein (pin1) mRNA, complete cds
Length = 2473
Score = 118 bits (253), Expect = 1e-026
Identities = 48/89 (53%), Positives = 60/89 (67%)
Frame = +1 / +2
Query: 67 PTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQI 246
P MIS YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF
Sbjct: 344 PKMISLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHF 523
Query: 247 LSTNXXXXXNLKXXXXXXXQKSXXLLGFA 333
+STN NL+ QK L+ A
Sbjct: 524 ISTNDPYNMNLRFITADSLQKVIVLVVLA 610
>gb|AF515435.1| Populus tremula x Populus tremuloides PIN1-like auxin transport
protein (pin2) mRNA, complete cds
Length = 2297
Score = 117 bits (250), Expect = 3e-026
Identities = 49/92 (53%), Positives = 62/92 (67%)
Frame = +1 / +3
Query: 70 TMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQIL 249
TMIS +YHVL VPLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +
Sbjct: 336 TMISIVDLYHVLTAVVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFI 515
Query: 250 STNXXXXXNLKXXXXXXXQKSXXLLGFAXASR 345
S+N NL QK L+ A SR
Sbjct: 516 SSNNPYAMNLGFIAADTLQKIIVLVVLAIWSR 611
>gb|AF515434.1| Populus tremula x Populus tremuloides PIN1-like auxin transport
protein (pin3) mRNA, complete cds
Length = 2790
Score = 112 bits (240), Expect = 7e-025
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +1 / +1
Query: 70 TMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQIL 249
TMIS +Y+VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +
Sbjct: 244 TMISWNDLYNVLSAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFI 423
Query: 250 STNXXXXXNLKXXXXXXXQKSXXLL 324
STN N + QK L+
Sbjct: 424 STNDPYAMNFRFIAADTLQKIIMLI 498
>gb|AY302060.1| Populus tomentosa PIN1-like protein mRNA, complete cds
Length = 1952
Score = 109 bits (233), Expect = 7e-024
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI +Y+VL +PLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 1 MICWNDLYNVLSAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 180
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLL 324
TN N K QK L+
Sbjct: 181 TNDPYAMNFKFIAADTLQKIIMLI 252
>gb|AY496447.1| Populus tomentosa putative auxin efflux carrier protein (PIN1)
mRNA, partial cds
Length = 192
Score = 105 bits (223), Expect = 2e-022
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF ++
Sbjct: 1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 180
Query: 253 TN 258
N
Sbjct: 181 AN 186
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 147,325,260
Number of Sequences: 369679
Number of extensions: 1541567
Number of successful extensions: 70903
Number of sequences better than 1.0e-020: 5
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 3478203190
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)