TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus t... 232 e-100
gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus tr... 232 e-100
gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus t... 230 e-100
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 89 4e-063
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 5', mRNA sequence
Length = 908
Score = 232 bits (501), Expect(3) = e-100
Identities = 93/109 (85%), Positives = 103/109 (94%)
Frame = -2 / +2
Query: 340 LLQEFEKKHGVRYPSMLGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLRVRFHY 161
L + +K GVR PS+LG+REHIFTGSVSSLAWFMSNQETSFVTIGQR+LANPL+VRFHY
Sbjct: 275 LQEFLKKPDGVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHY 454
Query: 160 GHPDIFDRLFHITRGGVSKASKIINLSEDIFAGFNSTLREGNVTHHEYL 14
GHPD+FDRLFH+TRGGVSKASK+INLSEDIFAGFNSTLREGNVTHHEY+
Sbjct: 455 GHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYI 601
Score = 158 bits (339), Expect(2) = 1e-057
Identities = 73/102 (71%), Positives = 84/102 (82%)
Frame = +3 / -3
Query: 18 YSW*VTLPSRNVELNPANMSSLRLIILDALLTPPLVMWKRRSKISG*P**KRTLNGLAST 197
YS VT PSR+VEL PAN+SSLRLI L+ALLTPPLV K S SG*P* RTL GLA++
Sbjct: 597 YS*WVTFPSRSVELKPANISSLRLITLEALLTPPLVK*KSLSNTSG*P*WNRTLRGLANS 418
Query: 198 RCPIVTKLVS*FDMNHARDDTLPVNMCSLTPSIDGYLTPCFF 323
PIVTKLVS*FD+NHARD+TLPVN+CSL+PSI+G+LTP F
Sbjct: 417 L*PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTPSGF 292
Score = 139 bits (298), Expect(3) = e-100
Identities = 59/68 (86%), Positives = 63/68 (92%)
Frame = -2 / +2
Query: 520 EPGQSLDQVIYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQEHYMEEALKMRN 341
EP Q+LDQVIY+IKLPG AILGEGKPENQNHAIIFTRGE LQ IDMNQ++YMEEALKMRN
Sbjct: 92 EPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMRN 271
Query: 340 LLQEFEKK 317
LLQEF KK
Sbjct: 272 LLQEFLKK 295
Score = 109 bits (233), Expect(2) = 1e-042
Identities = 48/108 (44%), Positives = 73/108 (67%)
Frame = +2 / -2
Query: 17 VLVVSNIAFTQCGIESCKYVLTEIDNFGCFTHTTPRNVEKAIEDIRMTIMKTNPQRIGKH 196
+ ++ NI FT C IE+ KY+ T+IDN FT T V+K I+ IRMTI++ + +R+G+
Sbjct: 598 IFMMGNIPFT*CRIEAGKYIFTQIDNLRSFTDTPSSQVKKPIKYIRMTIVEPHLKRVGQ* 419
Query: 197 SLSNCYETSFLI*HEPCKG*HTARKYVFSDSKHRWISHSMFLLKLLQQ 340
L++ ++T FLI*H+PCK *+T+ KY+ S K+R I H++ L K Q
Sbjct: 418 PLTDSHKTGFLI*HKPCKR*NTSSKYMLSKPKYRRIPHTIRLFKKFLQ 275
Score = 85.4 bits (180), Expect(2) = 1e-057
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +2 / -2
Query: 326 KLLQQISHFQSLLHIVLLIHIYSLEAFASGEYYCMVLIFWLSFT*NGITW*LYLVDDLIK 505
K LQQI HFQ H+V+L+HIY L+AF++ E MVL+FW SFT +G +W Y ++DL++
Sbjct: 286 KFLQQIPHFQGFFHVVILVHIYCLQAFSTCEDNSMVLVFWFSFTQDGWSWKFYSINDLVQ 107
Query: 506 AL 511
L
Sbjct: 106 VL 101
Score = 84.0 bits (177), Expect(2) = 1e-042
Identities = 40/68 (58%), Positives = 43/68 (63%)
Frame = +3 / -3
Query: 318 FFSNSCSRFLIFKAXXXXXXXXXXXVWRHSPLVNIIAWF*FSGFPSPKMALPGSFIL*MT 497
F NSCS+FLIFKA + SP V IIAWF FSGFPSPKMA PGSFI *MT
Sbjct: 294 FLRNSCSKFLIFKASSM*LSWFISIACKPSPRVKIIAWFWFSGFPSPKMAGPGSFIR*MT 115
Query: 498 *SRL*PGS 521
S+ GS
Sbjct: 114 WSKFCTGS 91
Score = 61.6 bits (128), Expect(3) = 4e-028
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = -1 / +1
Query: 497 GHLQDKATR*CHFR*RKARKSEPCNNIHQRRMPPNYRYESGALYGGGFENEKSAARV 327
GHL +K +R H *RK RK +PC +H R + RYE G L+G ENE+ AAR+
Sbjct: 115 GHLSNKTSRTSHLG*RKTRKPKPCYYLHTWRRLASNRYEPG*LHGRSLENEEFAARI 285
Score = 58.3 bits (121), Expect(3) = 4e-028
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = -1 / +1
Query: 314 WSEISIDAWSQRTHIYGQCVIPCMVHVKSGN*FRNNWTTSACQSVEGSFSLWSS 153
W E S D W+ R +IY +C I CMV+VKSGN F + + + Q G+ LWSS
Sbjct: 301 WCEESFDTWA*RAYIYWKCFISCMVYVKSGNQFCDYRSEAIGQPS*GAVPLWSS 462
Score = 42.8 bits (87), Expect(3) = 4e-028
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -1 / +1
Query: 113 CE*SIQNYQSQ*GHICRIQFHIA*RQCY 30
C+*S YQS+* +ICR+QF+ *R+CY
Sbjct: 502 CQ*SF*GYQSE*RYICRLQFYTT*RECY 585
Score = 34.1 bits (68), Expect(3) = e-100
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / +2
Query: 589 DRXKKIEKVYYSVLVKASVTK 527
DR K I+KVYYS LVKA++ K
Sbjct: 14 DRSKVIQKVYYSSLVKAALPK 76
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
5', mRNA sequence
Length = 599
Score = 232 bits (501), Expect(3) = e-100
Identities = 93/109 (85%), Positives = 103/109 (94%)
Frame = -2 / +2
Query: 340 LLQEFEKKHGVRYPSMLGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLRVRFHY 161
L + +K GVR PS+LG+REHIFTGSVSSLAWFMSNQETSFVTIGQR+LANPL+VRFHY
Sbjct: 272 LQEFLKKPDGVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHY 451
Query: 160 GHPDIFDRLFHITRGGVSKASKIINLSEDIFAGFNSTLREGNVTHHEYL 14
GHPD+FDRLFH+TRGGVSKASK+INLSEDIFAGFNSTLREGNVTHHEY+
Sbjct: 452 GHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYI 598
Score = 158 bits (339), Expect(2) = 1e-057
Identities = 73/102 (71%), Positives = 84/102 (82%)
Frame = +3 / -3
Query: 18 YSW*VTLPSRNVELNPANMSSLRLIILDALLTPPLVMWKRRSKISG*P**KRTLNGLAST 197
YS VT PSR+VEL PAN+SSLRLI L+ALLTPPLV K S SG*P* RTL GLA++
Sbjct: 594 YS*WVTFPSRSVELKPANISSLRLITLEALLTPPLVK*KSLSNTSG*P*WNRTLRGLANS 415
Query: 198 RCPIVTKLVS*FDMNHARDDTLPVNMCSLTPSIDGYLTPCFF 323
PIVTKLVS*FD+NHARD+TLPVN+CSL+PSI+G+LTP F
Sbjct: 414 L*PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTPSGF 289
Score = 139 bits (298), Expect(3) = e-100
Identities = 59/68 (86%), Positives = 63/68 (92%)
Frame = -2 / +2
Query: 520 EPGQSLDQVIYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQEHYMEEALKMRN 341
EP Q+LDQVIY+IKLPG AILGEGKPENQNHAIIFTRGE LQ IDMNQ++YMEEALKMRN
Sbjct: 89 EPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMRN 268
Query: 340 LLQEFEKK 317
LLQEF KK
Sbjct: 269 LLQEFLKK 292
Score = 109 bits (233), Expect(2) = 1e-042
Identities = 48/108 (44%), Positives = 73/108 (67%)
Frame = +2 / -2
Query: 17 VLVVSNIAFTQCGIESCKYVLTEIDNFGCFTHTTPRNVEKAIEDIRMTIMKTNPQRIGKH 196
+ ++ NI FT C IE+ KY+ T+IDN FT T V+K I+ IRMTI++ + +R+G+
Sbjct: 595 IFMMGNIPFT*CRIEAGKYIFTQIDNLRSFTDTPSSQVKKPIKYIRMTIVEPHLKRVGQ* 416
Query: 197 SLSNCYETSFLI*HEPCKG*HTARKYVFSDSKHRWISHSMFLLKLLQQ 340
L++ ++T FLI*H+PCK *+T+ KY+ S K+R I H++ L K Q
Sbjct: 415 PLTDSHKTGFLI*HKPCKR*NTSSKYMLSKPKYRRIPHTIRLFKKFLQ 272
Score = 85.4 bits (180), Expect(2) = 1e-057
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +2 / -2
Query: 326 KLLQQISHFQSLLHIVLLIHIYSLEAFASGEYYCMVLIFWLSFT*NGITW*LYLVDDLIK 505
K LQQI HFQ H+V+L+HIY L+AF++ E MVL+FW SFT +G +W Y ++DL++
Sbjct: 283 KFLQQIPHFQGFFHVVILVHIYCLQAFSTCEDNSMVLVFWFSFTQDGWSWKFYSINDLVQ 104
Query: 506 AL 511
L
Sbjct: 103 VL 98
Score = 84.0 bits (177), Expect(2) = 1e-042
Identities = 40/68 (58%), Positives = 43/68 (63%)
Frame = +3 / -3
Query: 318 FFSNSCSRFLIFKAXXXXXXXXXXXVWRHSPLVNIIAWF*FSGFPSPKMALPGSFIL*MT 497
F NSCS+FLIFKA + SP V IIAWF FSGFPSPKMA PGSFI *MT
Sbjct: 291 FLRNSCSKFLIFKASSM*LSWFISIACKPSPRVKIIAWFWFSGFPSPKMAGPGSFIR*MT 112
Query: 498 *SRL*PGS 521
S+ GS
Sbjct: 111 WSKFCTGS 88
Score = 61.6 bits (128), Expect(3) = 4e-028
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = -1 / +1
Query: 497 GHLQDKATR*CHFR*RKARKSEPCNNIHQRRMPPNYRYESGALYGGGFENEKSAARV 327
GHL +K +R H *RK RK +PC +H R + RYE G L+G ENE+ AAR+
Sbjct: 112 GHLSNKTSRTSHLG*RKTRKPKPCYYLHTWRRLASNRYEPG*LHGRSLENEEFAARI 282
Score = 58.3 bits (121), Expect(3) = 4e-028
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = -1 / +1
Query: 314 WSEISIDAWSQRTHIYGQCVIPCMVHVKSGN*FRNNWTTSACQSVEGSFSLWSS 153
W E S D W+ R +IY +C I CMV+VKSGN F + + + Q G+ LWSS
Sbjct: 298 WCEESFDTWA*RAYIYWKCFISCMVYVKSGNQFCDYRSEAIGQPS*GAVPLWSS 459
Score = 42.8 bits (87), Expect(3) = 4e-028
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -1 / +1
Query: 113 CE*SIQNYQSQ*GHICRIQFHIA*RQCY 30
C+*S YQS+* +ICR+QF+ *R+CY
Sbjct: 499 CQ*SF*GYQSE*RYICRLQFYTT*RECY 582
Score = 34.1 bits (68), Expect(3) = e-100
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / +2
Query: 589 DRXKKIEKVYYSVLVKASVTK 527
DR K I+KVYYS LVKA++ K
Sbjct: 11 DRSKVIQKVYYSSLVKAALPK 73
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 5', mRNA sequence
Length = 872
Score = 230 bits (496), Expect(3) = e-100
Identities = 93/110 (84%), Positives = 102/110 (92%)
Frame = -2 / +2
Query: 340 LLQEFEKKHGVRYPSMLGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLRVRFHY 161
L + +K GVR PS+LG+REHIFTGSVSSLAWFMSNQETSFVTIGQR+LANPL+VRFHY
Sbjct: 272 LQEFLKKPDGVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHY 451
Query: 160 GHPDIFDRLFHITRGGVSKASKIINLSEDIFAGFNSTLREGNVTHHEYLP 11
GHPD+FDRLFH+TRGGVSKASK+INLSEDIFAGFNSTLREGNVTHHE P
Sbjct: 452 GHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHENXP 601
Score = 158 bits (340), Expect(2) = 1e-057
Identities = 73/104 (70%), Positives = 85/104 (81%)
Frame = +3 / -3
Query: 12 GRYSW*VTLPSRNVELNPANMSSLRLIILDALLTPPLVMWKRRSKISG*P**KRTLNGLA 191
G +S VT PSR+VEL PAN+SSLRLI L+ALLTPPLV K S SG*P* RTL GLA
Sbjct: 600 GXFS*WVTFPSRSVELKPANISSLRLITLEALLTPPLVK*KSLSNTSG*P*WNRTLRGLA 421
Query: 192 STRCPIVTKLVS*FDMNHARDDTLPVNMCSLTPSIDGYLTPCFF 323
++ PIVTKLVS*FD+NHARD+TLPVN+CSL+PSI+G+LTP F
Sbjct: 420 NSL*PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTPSGF 289
Score = 139 bits (298), Expect(3) = e-100
Identities = 59/68 (86%), Positives = 63/68 (92%)
Frame = -2 / +2
Query: 520 EPGQSLDQVIYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQEHYMEEALKMRN 341
EP Q+LDQVIY+IKLPG AILGEGKPENQNHAIIFTRGE LQ IDMNQ++YMEEALKMRN
Sbjct: 89 EPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMRN 268
Query: 340 LLQEFEKK 317
LLQEF KK
Sbjct: 269 LLQEFLKK 292
Score = 110 bits (235), Expect(2) = 6e-043
Identities = 49/112 (43%), Positives = 74/112 (66%)
Frame = +2 / -2
Query: 5 PPGQVLVVSNIAFTQCGIESCKYVLTEIDNFGCFTHTTPRNVEKAIEDIRMTIMKTNPQR 184
P + ++ NI FT C IE+ KY+ T+IDN FT T V+K I+ IRMTI++ + +R
Sbjct: 607 PNWXIFMMGNIPFT*CRIEAGKYIFTQIDNLRSFTDTPSSQVKKPIKYIRMTIVEPHLKR 428
Query: 185 IGKHSLSNCYETSFLI*HEPCKG*HTARKYVFSDSKHRWISHSMFLLKLLQQ 340
+G+ L++ ++T FLI*H+PCK *+T+ KY+ S K+R I H++ L K Q
Sbjct: 427 VGQ*PLTDSHKTGFLI*HKPCKR*NTSSKYMLSKPKYRRIPHTIRLFKKFLQ 272
Score = 85.4 bits (180), Expect(2) = 1e-057
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +2 / -2
Query: 326 KLLQQISHFQSLLHIVLLIHIYSLEAFASGEYYCMVLIFWLSFT*NGITW*LYLVDDLIK 505
K LQQI HFQ H+V+L+HIY L+AF++ E MVL+FW SFT +G +W Y ++DL++
Sbjct: 283 KFLQQIPHFQGFFHVVILVHIYCLQAFSTCEDNSMVLVFWFSFTQDGWSWKFYSINDLVQ 104
Query: 506 AL 511
L
Sbjct: 103 VL 98
Score = 84.0 bits (177), Expect(2) = 6e-043
Identities = 40/68 (58%), Positives = 43/68 (63%)
Frame = +3 / -3
Query: 318 FFSNSCSRFLIFKAXXXXXXXXXXXVWRHSPLVNIIAWF*FSGFPSPKMALPGSFIL*MT 497
F NSCS+FLIFKA + SP V IIAWF FSGFPSPKMA PGSFI *MT
Sbjct: 291 FLRNSCSKFLIFKASSM*LSWFISIACKPSPRVKIIAWFWFSGFPSPKMAGPGSFIR*MT 112
Query: 498 *SRL*PGS 521
S+ GS
Sbjct: 111 WSKFCTGS 88
Score = 61.6 bits (128), Expect(3) = 4e-028
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = -1 / +1
Query: 497 GHLQDKATR*CHFR*RKARKSEPCNNIHQRRMPPNYRYESGALYGGGFENEKSAARV 327
GHL +K +R H *RK RK +PC +H R + RYE G L+G ENE+ AAR+
Sbjct: 112 GHLSNKTSRTSHLG*RKTRKPKPCYYLHTWRRLASNRYEPG*LHGRSLENEEFAARI 282
Score = 58.3 bits (121), Expect(3) = 4e-028
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = -1 / +1
Query: 314 WSEISIDAWSQRTHIYGQCVIPCMVHVKSGN*FRNNWTTSACQSVEGSFSLWSS 153
W E S D W+ R +IY +C I CMV+VKSGN F + + + Q G+ LWSS
Sbjct: 298 WCEESFDTWA*RAYIYWKCFISCMVYVKSGNQFCDYRSEAIGQPS*GAVPLWSS 459
Score = 42.8 bits (87), Expect(3) = 4e-028
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -1 / +1
Query: 113 CE*SIQNYQSQ*GHICRIQFHIA*RQCY 30
C+*S YQS+* +ICR+QF+ *R+CY
Sbjct: 499 CQ*SF*GYQSE*RYICRLQFYTT*RECY 582
Score = 34.1 bits (68), Expect(3) = e-100
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / +2
Query: 589 DRXKKIEKVYYSVLVKASVTK 527
DR K I+KVYYS LVKA++ K
Sbjct: 11 DRSKVIQKVYYSSLVKAALPK 73
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 88.6 bits (187), Expect(5) = 4e-063
Identities = 31/44 (70%), Positives = 40/44 (90%)
Frame = -2 / +3
Query: 178 RVRFHYGHPDIFDRLFHITRGGVSKASKIINLSEDIFAGFNSTL 47
RVR HYGHPD+FDR+FHITRGG+SKAS++IN+SEDI++G + L
Sbjct: 25269 RVRMHYGHPDVFDRVFHITRGGISKASRVINISEDIYSGMTALL 25400
Score = 82.2 bits (173), Expect(5) = 4e-063
Identities = 32/39 (82%), Positives = 34/39 (87%)
Frame = -2 / +1
Query: 493 IYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQ 377
IY +KLPGN LGEGKPENQNHAIIFTRG +QTIDMNQ
Sbjct: 22477 IYSVKLPGNPKLGEGKPENQNHAIIFTRGNAIQTIDMNQ 22593
Score = 71.6 bits (150), Expect(5) = 4e-063
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = -2 / +3
Query: 376 EHYMEEALKMRNLLQEFEKKHGVRYPSMLGVREHIFTG 263
++Y EEALKMRNLL+EF + HG+R P++LGVREH+FTG
Sbjct: 24900 DNYFEEALKMRNLLEEFHQDHGIRPPTILGVREHVFTG 25013
Score = 60.2 bits (125), Expect(5) = 4e-063
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -2 / +3
Query: 262 SVSSLAWFMSNQETSFVTIGQRVLANPLR 176
SVSSLA FMSNQETSFVT+GQRVLANPL+
Sbjct: 25098 SVSSLASFMSNQETSFVTLGQRVLANPLK 25184
Score = 48.3 bits (99), Expect(5) = 4e-024
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3 / -1
Query: 408 PLVNIIAWF*FSGFPSPKMALPGS 479
P VNIIAWF*FSGFPSP PG+
Sbjct: 22562 PRVNIIAWF*FSGFPSPSFGFPGN 22491
Score = 47.8 bits (98), Expect(5) = 4e-024
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +2 / -1
Query: 269 KYVFSDSKHRWISHSMFLLKLLQQISHFQSLLHIVLL 379
KY+F ++K+ W +++M L++ QQISH Q LL I++L
Sbjct: 25007 KYMFPNTKNGWRTNTMILMEFFQQISHLQGLLKIIIL 24897
Score = 47.3 bits (97), Expect(5) = 4e-024
Identities = 24/39 (61%), Positives = 26/39 (66%)
Frame = +3 / -2
Query: 63 PANMSSLRLIILDALLTPPLVMWKRRSKISG*P**KRTL 179
P +SSL LI +ALL PP VMWK SK SG P* RTL
Sbjct: 25384 PEYISSLMLITREALLIPPRVMWKTLSKTSGCP*CIRTL 25268
Score = 45.5 bits (93), Expect(5) = 4e-063
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = -2 / +2
Query: 67 AGFNSTLREGNVTHHEYL 14
AGFNSTLR+GNVTHHEY+
Sbjct: 25889 AGFNSTLRQGNVTHHEYI 25942
Score = 44.1 bits (90), Expect(5) = 4e-024
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3 / -2
Query: 183 GLASTRCPIVTKLVS*FDMNHARDDTL 263
GLA TR P VTKLVS*FD+N A+++TL
Sbjct: 25177 GLARTRWPRVTKLVS*FDINEAKEETL 25097
Score = 26.3 bits (51), Expect(5) = 4e-024
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3 / -3
Query: 18 YSW*VTLPSRNVELNPA 68
YS VT P R VELNPA
Sbjct: 25938 YS*WVTFPWRRVELNPA 25888
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 330,694,211
Number of Sequences: 369679
Number of extensions: 4541882
Number of successful extensions: 29928
Number of sequences better than 1.0e-020: 5
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9667336420
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)