TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCG11e12.yg.2.1
         (636 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY935501.1|  Populus tremula x Populus tremuloides putati...   152   3e-044

>gb|AY935501.1| Populus tremula x Populus tremuloides putative
           endo-1,4-beta-xylanase mRNA, complete cds
          Length = 3001

 Score =  152 bits (326), Expect(2) = 3e-044
 Identities = 67/122 (54%), Positives = 83/122 (68%)
 Frame = +2 / +1

                                                                       
Query: 224 GIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLR 403
           G     G NYAVVS R E WQGLEQDIT+++S  + Y +SA V V G VQ   +V ATL+
Sbjct: 259 GFSTKPGGNYAVVSNRKECWQGLEQDITSRISPCSTYSISARVGVSGPVQYPTDVLATLK 438

                                                                       
Query: 404 LQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVA 583
           L+  + +T Y  VG +  SKE W KLEG+FSL  MP +VVFYLEGP  GVDL+I+SV + 
Sbjct: 439 LEYQNSATSYLLVGEISVSKEGWEKLEGTFSLATMPDHVVFYLEGPAPGVDLLIESVIIT 618

             
Query: 584 CS 589
           CS
Sbjct: 619 CS 624




 Score =  105 bits (223), Expect = 4e-022
 Identities = 54/118 (45%), Positives = 67/118 (56%)
 Frame = -1 / -3

                                                                       
Query: 588 EQATVTESMTRSTPAGGPSR*NTTFFGMFVKEKEPSNLFHFSFEATTLPTGL*CVDPSAF 409
           EQ  +T+S++RSTP  GPS+* TT+ GM   E  PSN  H SF+    PT  * V    +
Sbjct: 623 EQVMITDSISRSTPGAGPSK*KTTWSGMVANENVPSNFSHPSFDTEISPTSK*LVAEFWY 444

                                                                     
Query: 408 CNLRVALTSTWP*TIPSTLTKAEXXXXXXXXXXXVISCSRPCQCSVLFETTA*FSPEF 235
            + +VA TS    T P T T+AE           VISCSRPCQ S+ F+TTA*  P F
Sbjct: 443 SSFKVASTSVGYCTGPDTPTRAEME*VEHGEIRLVISCSRPCQHSLRFDTTA*LPPGF 270




 Score =  100 bits (214), Expect(2) = 2e-023
 Identities = 41/114 (35%), Positives = 68/114 (59%)
 Frame = +2 / +1

                                                                        
Query: 239  SGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNAD 418
            SG+  A  ++RT+ W G++Q+IT +V     Y  +A VR+ G      +++ATL +Q  +
Sbjct: 784  SGKVLATATERTQSWNGIQQEITERVQRKLAYEATAVVRIFGNNVTSADIRATLWVQTPN 963

                                                                  
Query: 419  GSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
                Y  + ++ A+ + W +L+G F L   PK VV Y+EGPPAG D++++S  V
Sbjct: 964  LREQYIGIANLQATDKDWVQLQGKFLLNGSPKRVVIYIEGPPAGTDILVNSFVV 1125




 Score = 48.3 bits (99), Expect(2) = 3e-044
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = +2 / +1

                                                          
Query: 74  SVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSG 214
           S T+S     SS     NIILN+DFS+GL+ W+P  C  +  S  SG
Sbjct: 112 SETVSQNMIDSSNSNAPNIILNHDFSRGLNSWHPNCCDGFVLSADSG 252




 Score = 33.1 bits (66), Expect(2) = 2e-023
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2 / +1

                            
Query: 38  EGPPPGVDLLIDSVTIS 88
           EGP PGVDLLI+SV I+
Sbjct: 568 EGPAPGVDLLIESVIIT 618



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 327,698,722
Number of Sequences: 369679
Number of extensions: 4927449
Number of successful extensions: 55943
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7831881440
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)