TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBS9h08.xg.2.1
         (770 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN523227.1|CN523227  GQ015M01.B3_J05 GQ015 Populus tricho...   103   9e-031
gb|CN549936.1|CN549936  GQ0243.B3_L22 GQ024 Populus trichoca...    96   2e-025

>gb|CN523227.1|CN523227 GQ015M01.B3_J05 GQ015 Populus trichocarpa x Populus deltoides cDNA
           clone GQ015M01_J05 5', mRNA sequence
          Length = 813

 Score =  103 bits (219), Expect(2) = 9e-031
 Identities = 39/80 (48%), Positives = 55/80 (68%)
 Frame = +1 / +3

                                                                       
Query: 340 VELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAIWS 519
           V+  ++E+EAVQ+KAGRY + +E PFF   +P +L P YN++  L+    S+N+N AIW 
Sbjct: 339 VDFIVQETEAVQAKAGRYVNPEENPFFPDNLPPSLVPNYNYSQVLHTGGASININKAIWD 518

                               
Query: 520 MYFDELLPRLXKXGDDGNYA 579
           MY ++LLP     GDDGNYA
Sbjct: 519 MYLNQLLPLFVVAGDDGNYA 578




 Score = 50.6 bits (104), Expect(2) = 9e-031
 Identities = 20/39 (51%), Positives = 29/39 (74%)
 Frame = +1 / +3

                                                  
Query: 181 STAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
           S +  +LD++R  L R+EDTIVF L+ERAK+P+N   Y+
Sbjct: 183 SGSEFTLDSIRKSLIRQEDTIVFCLMERAKFPMNSALYN 299



>gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichocarpa x Populus deltoides cDNA
           clone GQ0243_L22 5', mRNA sequence
          Length = 668

 Score = 95.9 bits (203), Expect(2) = 2e-025
 Identities = 38/108 (35%), Positives = 60/108 (55%)
 Frame = +1 / +3

                                                                       
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
           + S V+  ++E+E + ++AGRY+S  E PFF   +P ++  P  +   L+P A S+N+N 
Sbjct: 216 HGSLVKFIVKETERLHAQAGRYRSPDEHPFFPENLPHSMLLPSQYPKVLHPCADSININK 395

                                                           
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
            +W+MYF +LLP+L K GDD N               S   +Y  +VA
Sbjct: 396 KVWNMYFTDLLPKLAKAGDDDNCGSAAVCDTVCLQALSRRIHYGKFVA 539




 Score = 39.6 bits (80), Expect(2) = 2e-025
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1 / +3

                                                  
Query: 181 STAGLSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
           S+  L+LD +R  L  +ED+I+F+L+ RA+Y  N   Y+
Sbjct: 72  SSQTLTLDAIRKSLILQEDSIIFNLLLRAQYAYNANTYN 188



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 242,541,104
Number of Sequences: 369679
Number of extensions: 2682021
Number of successful extensions: 28562
Number of sequences better than 1.0e-020: 4
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9910234320
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)