TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.4
(664 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT517729.1|DT517729 WS02435.B21_C07 PTxD-ICC-N-A-14 Popu... 97 1e-035
gb|CF936952.1|CF936952 PO3012D09 Populus tomentiglandulosa ... 95 3e-035
gb|CA927208.1|CA927208 MTU6CR.P6.C08 Aspen root cDNA Librar... 94 4e-035
gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Popu... 92 6e-035
gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Popu... 92 6e-035
gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Popul... 97 5e-033
gb|CV226456.1|CV226456 WS0164.B21_F04 PT-DX-A-7 Populus tri... 97 2e-032
gb|CN522908.1|CN522908 GQ0122.B3_D03 GQ012 Populus trichoca... 84 8e-030
gb|CV259425.1|CV259425 WS02011.B21_F06 PTxN-IB-N-A-11 Popul... 97 2e-028
gb|DT506827.1|DT506827 WS02416.BR_J23 PTxD-ICC-N-A-14 Popul... 64 2e-023
>gb|DT517729.1|DT517729 WS02435.B21_C07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_C07 3', mRNA sequence
Length = 919
Score = 97.3 bits (206), Expect(3) = 1e-035
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = -2 / -3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G YSE+YRVLKPGQ FA EWC+TD FDP+N +H KAEIE+GDGLPDIR
Sbjct: 701 GCYSEIYRVLKPGQCFAAYEWCMTDSFDPHNQEHQKIKAEIEIGDGLPDIR 549
Score = 63.8 bits (133), Expect(3) = 1e-035
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = -2 / -3
Query: 366 SAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
+AG+ C +KGDFM MP DN +DA YAI+ATC+AP+A
Sbjct: 824 TAGVDRTCDFVKGDFMKMPFPDNIYDAVYAIEATCHAPDA 705
Score = 26.7 bits (52), Expect(3) = 1e-035
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2 / -3
Query: 513 SSTXXXGLXXNDYHVSRGK 457
SST G N+Y +SRGK
Sbjct: 893 SSTSVTG*TTNEYQISRGK 837
>gb|CF936952.1|CF936952 PO3012D09 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1079
Score = 95.0 bits (201), Expect(3) = 3e-035
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDI 4
G YSE+YRVLKPGQ FA EWC+TD FDP+N +H KAEIE+GDGLPDI
Sbjct: 655 GCYSEIYRVLKPGQCFAAYEWCMTDSFDPHNQEHQKIKAEIEIGDGLPDI 804
Score = 62.0 bits (129), Expect(3) = 3e-035
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ C +KGDF+ MP DN FDA YAI+ATC+AP+A
Sbjct: 535 AGVDGTCDFVKGDFVKMPFPDNIFDAVYAIEATCHAPDA 651
Score = 29.5 bits (58), Expect(3) = 3e-035
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
SST GL N+Y +SRGK
Sbjct: 463 SSTSVTGLNNNEYQISRGK 519
>gb|CA927208.1|CA927208 MTU6CR.P6.C08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 684
Score = 93.6 bits (198), Expect(3) = 4e-035
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = -2 / -1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G YSE+YRVLKPGQ FA EWC+TD F+P N +H K+EIE+GDGLPDIR
Sbjct: 243 GCYSEIYRVLKPGQCFAAYEWCMTDAFNPENQEHQKIKSEIEIGDGLPDIR 91
Score = 62.9 bits (131), Expect(3) = 4e-035
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = -2 / -1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ C +K DFM MP DN+FDA YAI+ATC+AP+A
Sbjct: 363 AGVDRTCDFVKADFMKMPFPDNSFDAVYAIEATCHAPDA 247
Score = 29.5 bits (58), Expect(3) = 4e-035
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / -1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
SST GL N+Y +SRGK
Sbjct: 435 SSTSVTGLNNNEYQISRGK 379
>gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 3', mRNA sequence
Length = 910
Score = 91.8 bits (194), Expect(3) = 6e-035
Identities = 34/51 (66%), Positives = 42/51 (82%)
Frame = -2 / -2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G YSE+YRVLKPGQ FA EWC+TD F+P++ +H K+EIE+GDGLPDIR
Sbjct: 699 GCYSEIYRVLKPGQCFAAYEWCMTDAFNPHDQEHQKIKSEIEIGDGLPDIR 547
Score = 64.3 bits (134), Expect(3) = 6e-035
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -2 / -2
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ C LK DFM MP DN+FDA YAI+ATC+AP+A
Sbjct: 819 AGVDRTCDFLKADFMKMPFPDNSFDAVYAIEATCHAPDA 703
Score = 29.5 bits (58), Expect(3) = 6e-035
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / -2
Query: 513 SSTXXXGLXXNDYHVSRGK 457
SST GL N+Y +SRGK
Sbjct: 891 SSTSVTGLNNNEYQISRGK 835
>gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_H07 3', mRNA sequence
Length = 900
Score = 91.8 bits (194), Expect(3) = 6e-035
Identities = 34/51 (66%), Positives = 42/51 (82%)
Frame = -2 / -1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G YSE+YRVLKPGQ FA EWC+TD F+P++ +H K+EIE+GDGLPDIR
Sbjct: 699 GCYSEIYRVLKPGQCFAAYEWCMTDAFNPHDQEHQKIKSEIEIGDGLPDIR 547
Score = 64.3 bits (134), Expect(3) = 6e-035
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -2 / -1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ C LK DFM MP DN+FDA YAI+ATC+AP+A
Sbjct: 819 AGVDRTCDFLKADFMKMPFPDNSFDAVYAIEATCHAPDA 703
Score = 29.5 bits (58), Expect(3) = 6e-035
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / -1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
SST GL N+Y +SRGK
Sbjct: 891 SSTSVTGLNNNEYQISRGK 835
>gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_N19 3', mRNA sequence
Length = 973
Score = 97.3 bits (206), Expect(2) = 5e-033
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = -2 / -3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G YSE+YRVLKPGQ FA EWC+TD FDP+N +H KAEIE+GDGLPDIR
Sbjct: 755 GCYSEIYRVLKPGQCFAAYEWCMTDSFDPHNQEHQKIKAEIEIGDGLPDIR 603
Score = 63.8 bits (133), Expect(2) = 5e-033
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = -2 / -3
Query: 366 SAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
+AG+ C +KGDFM MP DN +DA YAI+ATC+AP+A
Sbjct: 878 TAGVDRTCDFVKGDFMKMPFPDNIYDAVYAIEATCHAPDA 759
>gb|CV226456.1|CV226456 WS0164.B21_F04 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_F04
3', mRNA sequence
Length = 847
Score = 97.3 bits (206), Expect(2) = 2e-032
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = -2 / -2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G YSE+YRVLKPGQ FA EWC+TD FDP+N +H KAEIE+GDGLPDIR
Sbjct: 729 GCYSEIYRVLKPGQCFAAYEWCMTDSFDPHNQEHQKIKAEIEIGDGLPDIR 577
Score = 61.6 bits (128), Expect(2) = 2e-032
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = -2 / -2
Query: 360 GLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
G+ C +KGDFM MP DN +DA YAI+ATC+AP+A
Sbjct: 846 GVDRTCDFVKGDFMKMPFPDNIYDAVYAIEATCHAPDA 733
>gb|CN522908.1|CN522908 GQ0122.B3_D03 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_D03 5', mRNA sequence
Length = 467
Score = 84.5 bits (178), Expect(3) = 8e-030
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = -2 / +3
Query: 147 YSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Y E+YR+LKPGQ FA EWC+T+ FDP N +H K E+ELG+GLPDIR
Sbjct: 210 YKEIYRMLKPGQCFAAYEWCITESFDPLNQEHQRIKGEVELGNGLPDIR 356
Score = 59.7 bits (124), Expect(3) = 8e-030
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = -2 / +3
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
AG+ + C +K DFM MP +D+TFDA +AI+ATC+AP+
Sbjct: 84 AGVDKTCNYVKADFMKMPFSDSTFDAIFAIEATCHAPD 197
Score = 24.0 bits (46), Expect(3) = 8e-030
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2 / +3
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S T G+ N+Y +SRG+
Sbjct: 12 SGTLITGVNNNEYQISRGE 68
>gb|CV259425.1|CV259425 WS02011.B21_F06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_F06 3', mRNA sequence
Length = 788
Score = 97.3 bits (206), Expect(2) = 2e-028
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = -2 / -3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G YSE+YRVLKPGQ FA EWC+TD FDP+N +H KAEIE+GDGLPDIR
Sbjct: 705 GCYSEIYRVLKPGQCFAAYEWCMTDSFDPHNQEHQKIKAEIEIGDGLPDIR 553
Score = 48.7 bits (100), Expect(2) = 2e-028
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -2 / -3
Query: 324 FMNMPIADNTFDAAYAIQATCYAPEA 247
FM MP DN +DA YAI+ATC+AP+A
Sbjct: 786 FMKMPFPDNIYDAVYAIEATCHAPDA 709
>gb|DT506827.1|DT506827 WS02416.BR_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 5', mRNA sequence
Length = 861
Score = 64.3 bits (134), Expect(3) = 2e-023
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -2 / +3
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEA 247
AG+ C LK DFM MP DN+FDA YAI+ATC+AP+A
Sbjct: 663 AGVDRTCDFLKADFMKMPFPDNSFDAVYAIEATCHAPDA 779
Score = 52.8 bits (109), Expect(3) = 2e-023
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTD 79
G YSE+YRVLKPGQ FA EWC+TD
Sbjct: 783 GCYSEIYRVLKPGQCFAAYEWCMTD 857
Score = 29.5 bits (58), Expect(3) = 2e-023
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2 / +3
Query: 513 SSTXXXGLXXNDYHVSRGK 457
SST GL N+Y +SRGK
Sbjct: 591 SSTSVTGLNNNEYQISRGK 647
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 269,678,294
Number of Sequences: 369679
Number of extensions: 3699484
Number of successful extensions: 36850
Number of sequences better than 1.0e-020: 13
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8272424771
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)