TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA824881.1|CA824881 R49G12 two-month-old roots from clon... 110 6e-024
gb|DT516153.1|DT516153 WS02430.B21_I23 PTxD-ICC-N-A-14 Popu... 104 9e-023
gb|AI163170.1|AI163170 A034p39u Hybrid aspen plasmid librar... 104 1e-022
gb|DT499690.1|DT499690 WS9991.BR_B03 PT-P-FL-A-2 Populus tr... 104 2e-022
gb|BI130965.1|BI130965 G113P33Y Populus cambium cDNA librar... 104 3e-022
gb|AI165319.1|AI165319 A081P18U Hybrid aspen plasmid librar... 104 3e-022
gb|CV226522.1|CV226522 WS0164.B21_I06 PT-DX-A-7 Populus tri... 104 3e-022
gb|CV254823.1|CV254823 WS02411.B21_E17 PTxD-ICC-N-A-14 Popu... 104 3e-022
gb|CX183497.1|CX183497 G02_45-45_14.ab1 leaf inoculated wit... 104 3e-022
gb|BU837295.1|BU837295 T097B06 Populus apical shoot cDNA li... 101 6e-022
gb|DT475955.1|DT475955 WS0128.BR_M11 PT-GT-FL-A-3 Populus t... 104 6e-022
gb|CF235467.1|CF235467 PtaJXT0023B6B0604 Poplar cDNA librar... 102 1e-021
gb|CV281115.1|CV281115 WS0181.B21_A24 PTxD-IL-N-A-9 Populus... 102 1e-021
gb|CX170255.1|CX170255 A05_69-67_01.ab1 leaf inoculated wit... 102 1e-021
gb|CX175356.1|CX175356 E12_69-113_10.ab1 leaf inoculated wi... 102 1e-021
gb|DT492725.1|DT492725 WS02552.C21_C02 PT-MB-N-A-15 Populus... 102 1e-021
>gb|CA824881.1|CA824881 R49G12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 662
Score = 110 bits (234), Expect = 6e-024
Identities = 42/77 (54%), Positives = 49/77 (63%)
Frame = +3 / +3
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TM+FTG KC CDK +F+D+++ YHK+ HCKG M YSSMD LYCK
Sbjct: 141 TMAFTGTLDKCKACDKTVYFVDMMSLEGVPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCK 320
Query: 246 THFXQLFKXTGSFSKNF 296
THF QLFK G FSKNF
Sbjct: 321 THFEQLFKEGGDFSKNF 371
>gb|DT516153.1|DT516153 WS02430.B21_I23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_I23 3', mRNA sequence
Length = 420
Score = 104 bits (221), Expect(2) = 9e-023
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / -1
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 354 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 175
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 174 PHFEQLFKETGNFNKNF 124
Score = 20.3 bits (38), Expect(2) = 9e-023
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3 / -1
Query: 330 LTRXPSKXXXXXSXXQD 380
LTR PSK S Q+
Sbjct: 84 LTRSPSKAASMFSGTQE 34
>gb|AI163170.1|AI163170 A034p39u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 497
Score = 104 bits (221), Expect(2) = 1e-022
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / +2
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 101 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 280
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 281 PHFEQLFKETGNFNKNF 331
Score = 20.3 bits (38), Expect(2) = 1e-022
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3 / +2
Query: 330 LTRXPSKXXXXXSXXQD 380
LTR PSK S Q+
Sbjct: 371 LTRSPSKAASMFSGTQE 421
>gb|DT499690.1|DT499690 WS9991.BR_B03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01110_H14 5', mRNA sequence
Length = 535
Score = 104 bits (221), Expect(2) = 2e-022
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / +2
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 146 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 325
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 326 PHFEQLFKETGNFNKNF 376
Score = 19.4 bits (36), Expect(2) = 2e-022
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3 / +2
Query: 330 LTRXPSKXXXXXSXXQ 377
LTR PSK S Q
Sbjct: 416 LTRSPSKAASMFSGTQ 463
>gb|BI130965.1|BI130965 G113P33Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 565
Score = 104 bits (221), Expect(2) = 3e-022
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / +3
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 228 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 407
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 408 PHFEQLFKETGNFNKNF 458
Score = 18.9 bits (35), Expect(2) = 3e-022
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +3 / +3
Query: 330 LTRXPSKXXXXXSXXQD 380
LTR PS+ S Q+
Sbjct: 498 LTRSPSRAASMFSGTQE 548
>gb|AI165319.1|AI165319 A081P18U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 374
Score = 104 bits (221), Expect = 3e-022
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / +3
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 60 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 239
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 240 PHFEQLFKETGNFNKNF 290
>gb|CV226522.1|CV226522 WS0164.B21_I06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_I06
3', mRNA sequence
Length = 862
Score = 104 bits (221), Expect = 3e-022
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / -1
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 820 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 641
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 640 PHFEQLFKETGNFNKNF 590
>gb|CV254823.1|CV254823 WS02411.B21_E17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_E17 3', mRNA sequence
Length = 942
Score = 104 bits (221), Expect = 3e-022
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / -2
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 833 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 654
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 653 PHFEQLFKETGNFNKNF 603
>gb|CX183497.1|CX183497 G02_45-45_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 626
Score = 104 bits (221), Expect = 3e-022
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / +3
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 240 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 419
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 420 PHFEQLFKETGNFNKNF 470
>gb|BU837295.1|BU837295 T097B06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 569
Score = 101 bits (216), Expect(2) = 6e-022
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +3 / +2
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 248 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTSKLSNYSSMEGVLYCK 427
Query: 246 THFXQLFKXTGSFSKN 293
HF QLFK TG+F+KN
Sbjct: 428 PHFEQLFKETGNFNKN 475
Score = 20.3 bits (38), Expect(2) = 6e-022
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3 / +2
Query: 330 LTRXPSKXXXXXSXXQD 380
LTR PSK S Q+
Sbjct: 518 LTRSPSKAASMFSGTQE 568
>gb|DT475955.1|DT475955 WS0128.BR_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_M11 5', mRNA sequence
Length = 454
Score = 104 bits (221), Expect(2) = 6e-022
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +3 / +2
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHKT HCKG + YSSM+ LYCK
Sbjct: 146 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKTCFKCFHCKGTLKLSNYSSMEGVLYCK 325
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 326 PHFEQLFKETGNFNKNF 376
Score = 17.6 bits (32), Expect(2) = 6e-022
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +3 / +2
Query: 330 LTRXPSKXXXXXS 368
LTR PSK S
Sbjct: 416 LTRSPSKAASMFS 454
>gb|CF235467.1|CF235467 PtaJXT0023B6B0604 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 689
Score = 102 bits (217), Expect = 1e-021
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +3 / +1
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHK+ HCKG + YSSM+ LYCK
Sbjct: 337 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCK 516
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 517 PHFDQLFKETGNFNKNF 567
>gb|CV281115.1|CV281115 WS0181.B21_A24 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0181_A24 3', mRNA sequence
Length = 912
Score = 102 bits (217), Expect = 1e-021
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +3 / -1
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHK+ HCKG + YSSM+ LYCK
Sbjct: 858 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCK 679
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 678 PHFDQLFKETGNFNKNF 628
>gb|CX170255.1|CX170255 A05_69-67_01.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 681
Score = 102 bits (217), Expect = 1e-021
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +3 / +1
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHK+ HCKG + YSSM+ LYCK
Sbjct: 160 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCK 339
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 340 PHFDQLFKETGNFNKNF 390
>gb|CX175356.1|CX175356 E12_69-113_10.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 712
Score = 102 bits (217), Expect = 1e-021
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +3 / +2
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHK+ HCKG + YSSM+ LYCK
Sbjct: 164 TMSFTGTQQKCKACEKTVYPMELLSADGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCK 343
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 344 PHFDQLFKETGNFNKNF 394
>gb|DT492725.1|DT492725 WS02552.C21_C02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_C02 3', mRNA sequence
Length = 890
Score = 102 bits (217), Expect = 1e-021
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +3 / -2
Query: 66 TMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCK 245
TMSFTG KC C+K + ++LL+ YHK+ HCKG + YSSM+ LYCK
Sbjct: 844 TMSFTGTQQKCKACEKTVYPMELLSTDGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCK 665
Query: 246 THFXQLFKXTGSFSKNF 296
HF QLFK TG+F+KNF
Sbjct: 664 PHFDQLFKETGNFNKNF 614
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 105,917,281
Number of Sequences: 369679
Number of extensions: 763635
Number of successful extensions: 28217
Number of sequences better than 1.0e-020: 21
length of database: 67,802,888
effective HSP length: 50
effective length of database: 49,318,938
effective search space used: 3945515040
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)