TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY438099.1| Populus balsamifera subsp. trichocarpa x Pop... 169 5e-047
gb|CV276781.1|CV276781 WS0141.B21_M06 PTxD-IL-A-5 Populus t... 131 5e-043
dbj|AB198180.1| Populus alba ispS mRNA for isoprene synthas... 156 9e-038
emb|AJ294819.1|PAL294819 Populus alba x Populus tremula mRN... 155 2e-037
gb|AJ773276.1|AJ773276 AJ773276 Populus euphratica leaf 3-6... 138 4e-032
gb|CV234819.1|CV234819 WS01216.B21_H10 PT-GT-FL-A-3 Populus... 128 2e-029
gb|AY341431.1| Populus tremuloides isoprene synthase (IspS)... 87 5e-029
gb|CA929440.1|CA929440 MTU2CA.P13.G08 Aspen apex cDNA Libra... 107 7e-028
gb|CA929582.1|CA929582 MTU2CA.P15.G08 Aspen apex cDNA Libra... 107 9e-028
gb|BU814724.1|BU814724 N032C12 Populus bark cDNA library Po... 122 2e-027
gb|CA930068.1|CA930068 MTU2CA.P6.F07 Aspen apex cDNA Librar... 104 8e-027
gb|DN495280.1|DN495280 N032C12.5pR Populus bark cDNA librar... 89 1e-022
gb|DN495273.1|DN495273 N031H08.5pR Populus bark cDNA librar... 90 9e-018
gb|BU791154.1|BU791154 pni263 Poplar limiting vs. luxuriant... 87 8e-017
gb|BP927377.1|BP927377 BP927377 full-length enriched poplar... 76 2e-013
gb|AJ779848.1|AJ779848 AJ779848 Populus euphratica root 3-6... 74 8e-013
gb|CA930007.1|CA930007 MTU2CA.P5.H08 Aspen apex cDNA Librar... 52 3e-006
gb|AJ767400.1|AJ767400 AJ767400 Populus euphratica leaf adu... 51 7e-006
gb|DT503011.1|DT503011 WS0135.BR_B08 PTxD-IL-FL-A-4 Populus... 49 3e-005
gb|DT488492.1|DT488492 WS02536.B21_J10 PT-MB-N-A-15 Populus... 48 6e-005
gb|CA824186.1|CA824186 R37G11 two-month-old roots from clon... 41 0.005
gb|BU892949.1|BU892949 P071E03 Populus petioles cDNA librar... 40 0.018
gb|DN495725.1|DN495725 P003C04.5pR Populus petioles cDNA li... 39 0.035
gb|CV262405.1|CV262405 WS02019.B21_H14 PTxN-IB-N-A-11 Popul... 36 0.23
gb|CV263023.1|CV263023 WS02020.B21_C07 PTxN-IB-N-A-11 Popul... 36 0.23
gb|DT477167.1|DT477167 WS02519.BR_C20 PT-MB-N-A-15 Populus ... 36 0.23
gb|DT524375.1|DT524375 WS02042.C21.1_H12 PTxN-IB-N-A-11 Pop... 36 0.23
gb|BU830044.1|BU830044 T003C01 Populus apical shoot cDNA li... 35 0.61
gb|BU888066.1|BU888066 P003C04 Populus petioles cDNA librar... 34 1.1
gb|CK092139.1|CK092139 G067P19.3pR Populus tension wood cDN... 33 1.6
gb|AJ774222.1|AJ774222 AJ774222 Populus euphratica shoot 3-... 32 3.0
gb|CK091834.1|CK091834 F129P16.3pR Populus flower cDNA libr... 32 4.1
gb|CK103868.1|CK103868 I002P31.5pR Populus senescing leaves... 32 4.1
gb|CV239527.1|CV239527 WS0232.B21_L05 PT-MB-A-13 Populus tr... 32 4.1
gb|CV260675.1|CV260675 WS02014.B21_L10 PTxN-IB-N-A-11 Popul... 32 4.1
gb|CX182615.1|CX182615 D03_45-88_07.ab1 leaf inoculated wit... 32 4.1
gb|DT486918.1|DT486918 WS02532.B21_E16 PT-MB-N-A-15 Populus... 32 4.1
gb|DT488910.1|DT488910 WS02537.B21_M13 PT-MB-N-A-15 Populus... 32 4.1
gb|DT501808.1|DT501808 WS01314.BR_E16 PTxD-IL-FL-A-4 Populu... 32 4.1
gb|DT504668.1|DT504668 WS01314.B21_E16 PTxD-IL-FL-A-4 Popul... 32 4.1
gb|CX183621.1|CX183621 D02_45-106_08.ab1 leaf inoculated wi... 31 7.7
gb|DN494564.1|DN494564 M106B03.5pR Populus female catkins c... 31 7.7
gb|BI136296.1|BI136296 F066P24Y Populus flower cDNA library... 29 9.3
>gb|AY438099.1| Populus balsamifera subsp. trichocarpa x Populus deltoides
(-)-germacrene D synthase (Tps1) mRNA, complete cds
Length = 1877
Score = 169 bits (363), Expect(2) = 5e-047
Identities = 67/168 (39%), Positives = 103/168 (61%)
Frame = +1 / +2
Query: 109 EVRSSLEIPLPKRGRIYESKYYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTR 288
++ +L+ P+ K E+++Y Y+ + E +L AKL+ N+LQ HQ+EL +
Sbjct: 677 KINHALKQPVRKNIPRLEARHYFSIYQEDPSCSEVLLNFAKLDFNILQKQHQKELSEIAN 856
Query: 289 WWEDMQIGSKLPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSFAT 468
WW+++ KLPFARDR++EC+ WILGVY EP + AR ILT VIA+ +++DDI+D + T
Sbjct: 857 WWKELDFAKKLPFARDRVIECYFWILGVYLEPEYFLARRILTKVIAMTSVIDDIYDVYGT 1036
Query: 469 PQECEILTNCIESWDPKGAQDLPGCMKFALEKILDSYQTITNMLHRED 612
P+E E+ T+ IE W+ LP MK + +LD Y I + E+
Sbjct: 1037 PEELELFTDAIERWEITAVDQLPEYMKVTYKALLDVYTEIEENMVTEE 1180
Score = 69.3 bits (145), Expect = 2e-011
Identities = 47/114 (41%), Positives = 59/114 (51%)
Frame = -2 / -3
Query: 548 FMQPGRS*APLGSQLSMQLVSISHSCGVAKESKISSKSVTMAITIVNIIRALE*HGS*YT 369
FM G + S LS+ V S S GV S +SS + MAIT+V+I+RA + GS YT
Sbjct: 1116 FMYSGS*STAVISHLSIASVKSSSSSGVP*TS*MSSMTEVMAITLVSILRAKKYSGSKYT 937
Query: 368 PKIHRKHSTILSRAKGSFDPICISSHHLVRIFSSC**WSCRTLEFSLASCSTFS 207
P I + HS LS AKGSF S H SS C+ L+ +LA S S
Sbjct: 936 PSIQK*HSITLSLAKGSFLAKSNSFHQFAISLSSFWCCFCKMLKSNLAKFSKTS 775
Score = 52.4 bits (108), Expect = 3e-006
Identities = 30/102 (29%), Positives = 48/102 (47%)
Frame = -1 / -2
Query: 588 NGLVAIQYLL*SKFHATWEVLSPFGIPAFDAISEYFTFLWGRERIENIVQECHDGDNHCQ 409
N V I L S FH W+++ P + IS+ F I +++ + G+N Q
Sbjct: 1156 NFCVDI*KCLVSHFHVLWQLIYGSNFPPLNCISKELEFFRCTIDIVDVIDDGSHGNNFGQ 977
Query: 408 YYPGS*MTRFIVYS*DP*KTLHDSISCERKF*SDLHILPPSC 283
Y + V+S* P L++S+SC+R+ S + PP C
Sbjct: 976 YPSSQEILWLQVHS*YPKVALYNSVSCKRQLLSKI*FFPPIC 851
Score = 38.6 bits (78), Expect(2) = 5e-047
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1 / +2
Query: 4 HFRTHGETILDEAIAFARSRLEMMLPYVKGPLWA 105
H R HG+ +L+EA+ F S LE + + PL A
Sbjct: 575 HLRVHGDEVLEEALVFTTSHLEFLATHSSSPLRA 676
>gb|CV276781.1|CV276781 WS0141.B21_M06 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0141_M06 3', mRNA sequence
Length = 901
Score = 131 bits (280), Expect(3) = 5e-043
Identities = 50/111 (45%), Positives = 71/111 (63%)
Frame = +1 / +3
Query: 280 LTRWWEDMQIGSKLPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDS 459
L WW+++ KLPFARDR++EC+ WILGVY EP + AR ILT VIA+ +++DDI+D
Sbjct: 405 LISWWKELDFAKKLPFARDRVIECYFWILGVYLEPEYFLARRILTKVIAMTSVIDDIYDV 584
Query: 460 FATPQECEILTNCIESWDPKGAQDLPGCMKFALEKILDSYQTITNMLHRED 612
+ TP+E E+ T+ IE W+ LP MK + +LD Y I + E+
Sbjct: 585 YGTPEELELFTDAIERWEITAVDQLPEYMKVTYKALLDVYTEIEENMVTEE 737
Score = 66.1 bits (138), Expect = 2e-010
Identities = 40/89 (44%), Positives = 50/89 (56%)
Frame = -2 / -1
Query: 548 FMQPGRS*APLGSQLSMQLVSISHSCGVAKESKISSKSVTMAITIVNIIRALE*HGS*YT 369
FM G + S LS+ V S S GV S +SS + MAIT+V+I+RA + GS YT
Sbjct: 673 FMYSGS*STAVISHLSIASVKSSSSSGVP*TS*MSSMTEVMAITLVSILRAKKYSGSKYT 494
Query: 368 PKIHRKHSTILSRAKGSFDPICISSHHLV 282
P I + HS LS AKGSF S H L+
Sbjct: 493 PSIQK*HSITLSLAKGSFLAKSNSFHQLI 407
Score = 50.6 bits (104), Expect = 9e-006
Identities = 30/103 (29%), Positives = 49/103 (47%)
Frame = -1 / -3
Query: 588 NGLVAIQYLL*SKFHATWEVLSPFGIPAFDAISEYFTFLWGRERIENIVQECHDGDNHCQ 409
N V I L S FH W+++ P + IS+ F I +++ + G+N Q
Sbjct: 713 NFCVDI*KCLVSHFHVLWQLIYGSNFPPLNCISKELEFFRCTIDIVDVIDDGSHGNNFGQ 534
Query: 408 YYPGS*MTRFIVYS*DP*KTLHDSISCERKF*SDLHILPPSCQ 280
Y + V+S* P L++S+SC+R+ S + PP+ Q
Sbjct: 533 YPSSQEILWLQVHS*YPKVALYNSVSCKRQLLSKI*FFPPTNQ 405
Score = 42.8 bits (87), Expect(3) = 5e-043
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +1 / +2
Query: 109 EVRSSLEIPLPKRGRIYESKYYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTR 288
++ +L+ P+ K E+++Y Y+ + E +L AKL+ N+LQ HQ+EL + +
Sbjct: 128 KINHALKQPVRKNIPRLEARHYFSIYQEDPSCSEVLLNFAKLDFNILQKQHQKELSEIAK 307
Score = 38.6 bits (78), Expect(3) = 5e-043
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1 / +2
Query: 4 HFRTHGETILDEAIAFARSRLEMMLPYVKGPLWA 105
H R HG+ +L+EA+ F S LE + + PL A
Sbjct: 26 HLRVHGDEVLEEALVFTTSHLEFLATHSSSPLRA 127
>dbj|AB198180.1| Populus alba ispS mRNA for isoprene synthase, complete cds
Length = 1788
Score = 156 bits (336), Expect = 9e-038
Identities = 69/190 (36%), Positives = 111/190 (58%)
Frame = +1 / +1
Query: 19 GETILDEAIAFARSRLEMMLPYVKGPLWAHEVRSSLEIPLPKRGRIYESKYYIHAYETSG 198
GE ILDEA FA S L+ + G A +V +LE+PL +R + E+ + I AY
Sbjct: 610 GENILDEAKVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKE 789
Query: 199 TLHEKVLQLAKLNSNVLQLHHQQELKILTRWWEDMQIGSKLPFARDRIVECFLWILGVYY 378
++ +L+LA L+ N++Q +Q++L+ +RWW + + +KL FARDR++E F W +GV +
Sbjct: 790 DANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAF 969
Query: 379 EPCHSRARIILTMVIAIVTLLDDIFDSFATPQECEILTNCIESWDPKGAQDLPGCMKFAL 558
EP +S R + + + VT++DDI+D + T E E+ T+ +E WD DLP MK
Sbjct: 970 EPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCF 1149
Query: 559 EKILDSYQTI 588
+ ++ I
Sbjct: 1150 LALYNTINEI 1179
>emb|AJ294819.1|PAL294819 Populus alba x Populus tremula mRNA for isoprene synthase (ispS gene)
Length = 2062
Score = 155 bits (333), Expect = 2e-037
Identities = 68/190 (35%), Positives = 111/190 (58%)
Frame = +1 / +3
Query: 19 GETILDEAIAFARSRLEMMLPYVKGPLWAHEVRSSLEIPLPKRGRIYESKYYIHAYETSG 198
GE ILDEA FA S L+ + G A +V +LE+PL +R + E+ + I AY
Sbjct: 666 GENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKE 845
Query: 199 TLHEKVLQLAKLNSNVLQLHHQQELKILTRWWEDMQIGSKLPFARDRIVECFLWILGVYY 378
++ +L+LA L+ N++Q +Q++L+ +RWW + + +KL FA+DR++E F W +GV +
Sbjct: 846 DANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFAKDRLIESFYWAVGVAF 1025
Query: 379 EPCHSRARIILTMVIAIVTLLDDIFDSFATPQECEILTNCIESWDPKGAQDLPGCMKFAL 558
EP +S R + + + VT++DDI+D + T E E+ T+ +E WD DLP MK
Sbjct: 1026 EPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCF 1205
Query: 559 EKILDSYQTI 588
+ ++ I
Sbjct: 1206 LALYNTINEI 1235
>gb|AJ773276.1|AJ773276 AJ773276 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000200007G08F1, mRNA sequence
Length = 692
Score = 138 bits (295), Expect = 4e-032
Identities = 56/162 (34%), Positives = 97/162 (59%)
Frame = +1 / +2
Query: 103 AHEVRSSLEIPLPKRGRIYESKYYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKIL 282
A +V +LE+PL +R + E+ + I AY ++ +L+LA ++ N++Q +Q++L+
Sbjct: 14 AEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANKVLLELAIVDYNMIQSVYQRDLRET 193
Query: 283 TRWWEDMQIGSKLPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSF 462
+RWW + + +KL FARDR++E F W +GV +EP +S R + + + VT++DDI+D +
Sbjct: 194 SRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVY 373
Query: 463 ATPQECEILTNCIESWDPKGAQDLPGCMKFALEKILDSYQTI 588
T E E+ T+ +E WD DLP MK + ++ I
Sbjct: 374 GTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINDI 499
>gb|CV234819.1|CV234819 WS01216.B21_H10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01216_H10 3', mRNA sequence
Length = 677
Score = 128 bits (275), Expect = 2e-029
Identities = 52/151 (34%), Positives = 89/151 (58%)
Frame = +1 / -1
Query: 157 YESKYYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTRWWEDMQIGSKLPFARD 336
++ K++I+AYE + +L LAK+N N++Q Q++L+ ++RWW ++ I L F RD
Sbjct: 665 FDVKWHINAYENDKQTNRHLLALAKVNFNMVQATLQKDLRDVSRWWRNLGIIENLSFTRD 486
Query: 337 RIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSFATPQECEILTNCIESWDP 516
R+VE FL +G+ +EP +S R LT VI ++ ++DD++D + + E + T + WD
Sbjct: 485 RLVESFLCTVGLVFEPKYSSFRKWLTKVIIMILIIDDVYDVYGSLHELQQFTKAVSRWDT 306
Query: 517 KGAQDLPGCMKFALEKILDSYQTITNMLHRE 609
Q+LP CMK + + D + + RE
Sbjct: 305 GEVQELPECMKICFQTLYDITNEMALEMQRE 213
Score = 38.6 bits (78), Expect = 0.035
Identities = 31/88 (35%), Positives = 39/88 (44%)
Frame = -2 / +1
Query: 548 FMQPGRS*APLGSQLSMQLVSISHSCGVAKESKISSKSVTMAITIVNIIRALE*HGS*YT 369
F+ G S* S L LV+ SC S SS M +T+V+ L GS +
Sbjct: 274 FIHSGSS*TSPVSHLLTALVNCCSSCREP*TS*TSSMISIMIMTLVSHFLKLLYLGSNTS 453
Query: 368 PKIHRKHSTILSRAKGSFDPICISSHHL 285
P +H+K ST S K F I HHL
Sbjct: 454 PTVHKKLSTSRSLVKLRFSIIPKFLHHL 537
>gb|AY341431.1| Populus tremuloides isoprene synthase (IspS) gene, complete cds
Length = 5324
Score = 87.2 bits (184), Expect(2) = 5e-029
Identities = 31/81 (38%), Positives = 52/81 (64%)
Frame = +1 / +2
Query: 277 ILTRWWEDMQIGSKLPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFD 456
+ RWW + + +KL FARDR++E F W +GV +EP +S R + + + VT++DDI+D
Sbjct: 3047 VALRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYD 3226
Query: 457 SFATPQECEILTNCIESWDPK 519
+ T E E+ T+ +E + P+
Sbjct: 3227 VYGTLDELELFTDAVERFVPR 3289
Score = 60.2 bits (125), Expect(2) = 5e-029
Identities = 32/90 (35%), Positives = 53/90 (58%)
Frame = +1 / +3
Query: 19 GETILDEAIAFARSRLEMMLPYVKGPLWAHEVRSSLEIPLPKRGRIYESKYYIHAYETSG 198
GE ILDEA FA S L+ + G A +V +LE+PL +R + E+ + I AY
Sbjct: 2685 GENILDEAKVFAISHLKELSEEKIGKELAEQVSHALELPLHRRTQRLEAVWSIEAYRKKE 2864
Query: 199 TLHEKVLQLAKLNSNVLQLHHQQELKILTR 288
++ +L+LA L+ N++Q +Q++L+ +R
Sbjct: 2865 DANQVLLELAILDYNMIQSVYQRDLRETSR 2954
>gb|CA929440.1|CA929440 MTU2CA.P13.G08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 383
Score = 107 bits (228), Expect(2) = 7e-028
Identities = 42/92 (45%), Positives = 63/92 (68%)
Frame = +1 / -1
Query: 109 EVRSSLEIPLPKRGRIYESKYYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTR 288
+V +L+ P+ K ES+ YI Y+ + ++ +L+LAKLN N+LQ H++EL +TR
Sbjct: 278 KVSHALKQPIRKGVLRLESRRYISIYQDDPSCNKTLLRLAKLNFNLLQDLHKEELAEITR 99
Query: 289 WWEDMQIGSKLPFARDRIVECFLWILGVYYEP 384
WW+ + +LPFARDR+VECF W +GVY+EP
Sbjct: 98 WWKGLDFARRLPFARDRVVECFFWTVGVYFEP 3
Score = 54.7 bits (113), Expect = 5e-007
Identities = 29/56 (51%), Positives = 33/56 (58%)
Frame = -2 / +1
Query: 383 GS*YTPKIHRKHSTILSRAKGSFDPICISSHHLVRIFSSC**WSCRTLEFSLASCS 216
GS YTP + +KHST LS AKGS HHLV SS SCR L+F+ AS S
Sbjct: 4 GSKYTPTVQKKHSTTLSLAKGSLLAKSKPFHHLVISASSSLCKSCRRLKFNFASLS 171
Score = 35.9 bits (72), Expect(2) = 7e-028
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1 / -1
Query: 1 AHFRTHGETILDEAIAFARSRLEMMLPYVKGPL 99
AH HGE ILDEA+AF L+ M PL
Sbjct: 383 AHLAVHGEDILDEALAFTTIHLKSMATSPNCPL 285
>gb|CA929582.1|CA929582 MTU2CA.P15.G08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 674
Score = 107 bits (228), Expect(2) = 9e-028
Identities = 42/92 (45%), Positives = 63/92 (68%)
Frame = +1 / -2
Query: 109 EVRSSLEIPLPKRGRIYESKYYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTR 288
+V +L+ P+ K ES+ YI Y+ + ++ +L+LAKLN N+LQ H++EL +TR
Sbjct: 280 KVSHALKQPIRKGVLRLESRRYISIYQDDPSCNKTLLRLAKLNFNLLQDLHKEELAEITR 101
Query: 289 WWEDMQIGSKLPFARDRIVECFLWILGVYYEP 384
WW+ + +LPFARDR+VECF W +GVY+EP
Sbjct: 100 WWKGLDFARRLPFARDRVVECFFWTVGVYFEP 5
Score = 53.3 bits (110), Expect = 1e-006
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = -2 / +3
Query: 383 GS*YTPKIHRKHSTILSRAKGSFDPICISSHHLVRIFSSC**WSCRTLEFSLASCS 216
GS YTP + +KHST LS AKGS HHLV SS SCR L+ S AS S
Sbjct: 6 GSKYTPTVQKKHSTTLSLAKGSLLAKSKPFHHLVISASSSLCKSCRRLKLSFASLS 173
Score = 35.9 bits (72), Expect(2) = 9e-028
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1 / -2
Query: 1 AHFRTHGETILDEAIAFARSRLEMMLPYVKGPL 99
AH HGE ILDEA+AF L+ M PL
Sbjct: 385 AHLAVHGEDILDEALAFTTIHLKSMATSPNCPL 287
>gb|BU814724.1|BU814724 N032C12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 766
Score = 122 bits (261), Expect = 2e-027
Identities = 52/145 (35%), Positives = 83/145 (57%)
Frame = +1 / +1
Query: 175 IHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTRWWEDMQIGSKLPFARDRIVECF 354
I+ YET + +L+LAKL+ N++Q HQ++LK +RWW+ +G KL FARDR++ F
Sbjct: 1 INLYETKTDMEPVLLELAKLDFNMVQAVHQEDLKDSSRWWKITGLGEKLDFARDRLMVYF 180
Query: 355 LWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSFATPQECEILTNCIESWDPKGAQDL 534
LW +G+ +EP R +L + +++T +DD++D T E E+ T+ I WD L
Sbjct: 181 LWSVGIIFEPQFGNIRRMLAKINSLITTVDDVYDVHGTLDELELFTDAIVRWDLNFMDCL 360
Query: 535 PGCMKFALEKILDSYQTITNMLHRE 609
P MK + +S I + R+
Sbjct: 361 PDYMKLCFFALFNSINEIAYDILRD 435
Score = 62.0 bits (129), Expect = 3e-009
Identities = 44/129 (34%), Positives = 59/129 (45%)
Frame = -2 / -3
Query: 569 NIFSRANFMQPGRS*APLGSQLSMQLVSISHSCGVAKESKISSKSVTMAITIVNIIRALE 390
N + NF+ GR L S L+M V+ S S V S SS V + +I+ L
Sbjct: 395 NNAKKHNFI*SGRQSMKLRSHLTMASVNSSSSSKVPWTS*TSSTVVISELIFASILLILP 216
Query: 389 *HGS*YTPKIHRKHSTILSRAKGSFDPICISSHHLVRIFSSC**WSCRTLEFSLASCSTF 210
GS P H+K++ LS AK +F P + HHL F S +C L+ S AS +
Sbjct: 215 N*GSNMIPTDHKKYTISLSLAKSNFSPSPVIFHHLDESFRSSWCTACTMLKSSFASSNKT 36
Query: 209 SCSVPLVSY 183
LVSY
Sbjct: 35 GSMSVLVSY 9
Score = 40.0 bits (81), Expect = 0.013
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = -1 / -2
Query: 549 FHATWEVLSPFGIPAFDAISEYFTFLWGRERIENIVQECHDGDNHCQYYPGS*MTRFIVY 370
FH W+ + IP+++ I E + G I NI+ C+ N C + P RF
Sbjct: 375 FHIVWKTIHEIKIPSYNGICE*LKLI*GTMDIINIINCCYK*INFC*HSPNITKLRFKYD 196
Query: 369 S*DP*KTLHDSISCERKF*SDLHILPP 289
P*+ H + + + S LPP
Sbjct: 195 PHRP*EIHHQPVPGKIQLFSKSCYLPP 115
>gb|CA930068.1|CA930068 MTU2CA.P6.F07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 527
Score = 104 bits (221), Expect(2) = 8e-027
Identities = 42/92 (45%), Positives = 62/92 (67%)
Frame = +1 / -1
Query: 109 EVRSSLEIPLPKRGRIYESKYYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTR 288
+V +L+ P+ K ES+ YI Y+ + ++ +L+LAKLN N+LQ H++EL +TR
Sbjct: 278 KVSHALKQPIRKGVLRLESRRYISIYQDDPSCNKTLLRLAKLNFNLLQDLHKEELAEITR 99
Query: 289 WWEDMQIGSKLPFARDRIVECFLWILGVYYEP 384
WW+ + +LPFARDR VECF W +GVY+EP
Sbjct: 98 WWKGLDFARRLPFARDRGVECFFWTVGVYFEP 3
Score = 53.8 bits (111), Expect = 1e-006
Identities = 29/56 (51%), Positives = 33/56 (58%)
Frame = -2 / +1
Query: 383 GS*YTPKIHRKHSTILSRAKGSFDPICISSHHLVRIFSSC**WSCRTLEFSLASCS 216
GS YTP + +KHST LS AKGS HHLV SS SCR L+F+ AS S
Sbjct: 4 GSKYTPTVQKKHSTPLSLAKGSLLAKSKPFHHLVISASSSLCKSCRRLKFNFASLS 171
Score = 35.9 bits (72), Expect(2) = 8e-027
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1 / -1
Query: 1 AHFRTHGETILDEAIAFARSRLEMMLPYVKGPL 99
AH HGE ILDEA+AF L+ M PL
Sbjct: 383 AHLAVHGEDILDEALAFTTIHLKSMATSPNCPL 285
>gb|DN495280.1|DN495280 N032C12.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N032C12 5', mRNA sequence
Length = 501
Score = 88.6 bits (187), Expect(2) = 1e-022
Identities = 34/89 (38%), Positives = 58/89 (65%)
Frame = +1 / +2
Query: 169 YYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTRWWEDMQIGSKLPFARDRIVE 348
++I+ YET + +L+LAKL+ N++Q HQ++LK +RWW+ +G KL FARD ++
Sbjct: 14 WFINLYETKTDMEPVLLELAKLDFNMVQAVHQEDLKDSSRWWKITGLGEKLDFARDMLMV 193
Query: 349 CFLWILGVYYEPCHSRARIILTMVIAIVT 435
FLW +G+ +EP +LT + +++T
Sbjct: 194 YFLWSVGIIFEPQFGHIMRMLTKINSLIT 280
Score = 44.6 bits (91), Expect(2) = 5e-007
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = -2 / -1
Query: 383 GS*YTPKIHRKHSTILSRAKGSFDPICISSHHLVRIFSSC**WSCRTLEFSLASCSTFSC 204
GS P H+K++ +S AK +F P + HHL F S +C L+ S AS +
Sbjct: 228 GSNMIPTDHKKYTISMSLAKSNFSPSPVIFHHLDESFRSSWCTACTMLKSSFASSNKTGS 49
Query: 203 SVPLVSYAWM 174
LVSY M
Sbjct: 48 MSVLVSYKLM 19
Score = 37.7 bits (76), Expect(2) = 1e-022
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1 / +3
Query: 439 LDDIFDSFATPQECEILTNCIESWDPKGAQDLPGCMKFALEKILDSYQTITNMLHRE 609
LDD++D T E E+ T+ I WD LP MK + +S I + R+
Sbjct: 285 LDDVYDVHGTLDELELFTDAIVRWDLNFMDCLPDYMKLCFFALFNSINEIAYDILRD 455
Score = 28.6 bits (56), Expect(2) = 5e-007
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1 / -2
Query: 549 FHATWEVLSPFGIPAFDAISEYFTFLWGRERIENIVQ 439
FH W+ + IP+++ I E + G I NI++
Sbjct: 395 FHIVWKTIHEIKIPSYNGICE*LKLI*GTMDIINIIK 285
>gb|DN495273.1|DN495273 N031H08.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N031H08 5', mRNA sequence
Length = 807
Score = 90.4 bits (191), Expect = 9e-018
Identities = 38/115 (33%), Positives = 62/115 (53%)
Frame = +1 / +3
Query: 265 QELKILTRWWEDMQIGSKLPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLD 444
++LK +RWW+ +G KL FARDR++ FLW +G+ +EP +L + +++T +D
Sbjct: 111 EDLKDSSRWWKIT*LGEKLDFARDRLMVYFLWSVGIIFEPQFGNITRMLAKINSLITTVD 290
Query: 445 DIFDSFATPQECEILTNCIESWDPKGAQDLPGCMKFALEKILDSYQTITNMLHRE 609
D++D T E E+ T+ I WD LP MK + +S I + R+
Sbjct: 291 DVYDVHGTLDELELFTDAIVRWDLNFMDCLPDYMKLCFFALFNSINEIAYDILRD 455
Score = 51.5 bits (106), Expect = 5e-006
Identities = 35/101 (34%), Positives = 47/101 (46%)
Frame = -2 / -3
Query: 569 NIFSRANFMQPGRS*APLGSQLSMQLVSISHSCGVAKESKISSKSVTMAITIVNIIRALE 390
N + NF+ GR L S L+M V+ S S V S SS V + +I+ L
Sbjct: 415 NNAKKHNFI*SGRQSMKLRSHLTMASVNSSSSSKVPWTS*TSSTVVISELIFASILVILP 236
Query: 389 *HGS*YTPKIHRKHSTILSRAKGSFDPICISSHHLVRIFSS 267
GS P H+K++ LS AK +F P + HHL F S
Sbjct: 235 N*GSNMIPTDHKKYTISLSLAKSNFSPSHVIFHHLDESFRS 113
Score = 36.8 bits (74), Expect = 0.12
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1 / +2
Query: 169 YYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTRWWEDMQIGSKLPFARDRIVE 348
++I+ YET + +L+LAKL+ N++Q H + + ED K+ F + +
Sbjct: 14 WFINLYETKTDMEPVLLELAKLDFNMVQAVHHRRSERFI*VVEDNMTWRKVGFCQGQADG 193
Query: 349 CFLWILG 369
FL + G
Sbjct: 194 VFLMVCG 214
Score = 34.1 bits (68), Expect = 0.83
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1 / -2
Query: 549 FHATWEVLSPFGIPAFDAISEYFTFLWGRERIENIVQECHDGDNHC 412
FH W+ + IP+++ I E + G I NI+ C+ N C
Sbjct: 395 FHIVWKTIHEIKIPSYNGICE*LKLI*GTMDIINIINCCYK*INFC 258
>gb|BU791154.1|BU791154 pni263 Poplar limiting vs. luxuriant nitrogen Populus trichocarpa x
Populus deltoides cDNA 3' similar to sesquiterpene
cyclase, mRNA sequence
Length = 731
Score = 87.2 bits (184), Expect = 8e-017
Identities = 30/73 (41%), Positives = 49/73 (67%)
Frame = +1 / +2
Query: 286 RWWEDMQIGSKLPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSFA 465
RWW D+ + P+ARDRIVE + W G+++EP ++ +R+++ I V+LLDD +D++A
Sbjct: 350 RWWNDLNFAEEFPYARDRIVEVYFWANGIHFEPQYAFSRMVVAKYIKFVSLLDDTYDAYA 529
Query: 466 TPQECEILTNCIE 504
+ +E TN IE
Sbjct: 530 SFEEIHHFTNAIE 568
Score = 31.3 bits (62), Expect = 5.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1 / -2
Query: 408 YYPGS*MTRFIVYS*DP*KTLHDSISCERKF*SDLHILPP 289
++P + R +YS P L++SISC RK S + ++PP
Sbjct: 472 HHPRESILRLEMYSICPEIDLYNSISCIRKLLSKI*VIPP 353
>gb|BP927377.1|BP927377 BP927377 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-070_N21.f 5', mRNA sequence
Length = 299
Score = 76.2 bits (160), Expect = 2e-013
Identities = 34/97 (35%), Positives = 61/97 (62%)
Frame = +1 / +2
Query: 118 SSLEIPLPKRGRIYESKYYIHAYETSGTLHEKVLQLAKLNSNVLQLHHQQELKILTRWWE 297
S+L+ PL + E++ +I E + +E + +LAK + N +Q H +ELK L +W++
Sbjct: 5 SALKQPLHRGIPRREARKFIDFCEDEESPNETLSKLAKFDFNRVQYMHLRELKDLYKWYD 184
Query: 298 DMQIGSKLPFARDRIVECFLWILGVYYEPCHSRARII 408
+ ++G FAR R+ E FLW + +++EP +SRAR++
Sbjct: 185 EARLGEMCTFARKRVAEVFLWTVILHFEPHYSRARMM 295
Score = 41.4 bits (84), Expect = 0.005
Identities = 27/62 (43%), Positives = 32/62 (51%)
Frame = -2 / -3
Query: 407 IIRALE*HGS*YTPKIHRKHSTILSRAKGSFDPICISSHHLVRIFSSC**WSCRTLEFSL 228
IIRA E* GS +H+K S L AK P SS+HL R FSS C L+ +
Sbjct: 294 IIRARE*CGSKCKITVHKKTSATLFLAKVHISPSLASSYHL*RSFSSRRCMYCTLLKSNF 115
Query: 227 AS 222
AS
Sbjct: 114 AS 109
>gb|AJ779848.1|AJ779848 AJ779848 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800008E09F1, mRNA sequence
Length = 346
Score = 73.9 bits (155), Expect = 8e-013
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = +1 / +3
Query: 286 RWWEDMQIGSKLPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSFA 465
R W+ +G KL FARDR++ FLW +GV +EP R +LT + +++T +DD++D
Sbjct: 24 RGWKMTGLGEKLDFARDRLMMYFLWTVGVIFEPQFGNCRRMLTKLNSLITTVDDVYDVHG 203
Query: 466 TPQECEILTNCI 501
T E E+ T+ I
Sbjct: 204 TLDELELFTDAI 239
Score = 42.8 bits (87), Expect = 0.002
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = -2 / -1
Query: 512 SQLSMQLVSISHSCGVAKESKISSKSVTMAITIVNIIRALE*HGS*YTPKIHRKHSTILS 333
+ L+M V+ S S V S SS V ++ V+I+ L GS TP +H+K+ LS
Sbjct: 250 TNLTMASVNSSSSSKVPWTS*TSSTVVISELSFVSILLQLPN*GSNMTPTVHKKYIISLS 71
Query: 332 RAKGSFDPICISSH 291
AK +F P + H
Sbjct: 70 LAKSNFSPSPVIFH 29
>gb|CA930007.1|CA930007 MTU2CA.P5.H08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 480
Score = 51.9 bits (107), Expect = 3e-006
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1 / -3
Query: 241 NVLQLHHQQELKILTRWWEDMQIGSKLPFARDRIVEC 351
++LQ ++EL +TRWW+ + +LPFARDR+VEC
Sbjct: 154 HLLQDLRKEELAEITRWWKGLDFARRLPFARDRVVEC 44
>gb|AJ767400.1|AJ767400 AJ767400 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100005F10F1, mRNA sequence
Length = 592
Score = 51.0 bits (105), Expect = 7e-006
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1 / +2
Query: 424 AIVTLLDDIFDSFATPQECEILTNCIESWDPKGAQDLPGCMKFALEKILDSYQTI 588
+ VT++DDI+D + T E E+ T+ +E WD DLP MK + ++ I
Sbjct: 8 SFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINDI 172
>gb|DT503011.1|DT503011 WS0135.BR_B08 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_B08 5', mRNA sequence
Length = 893
Score = 48.7 bits (100), Expect = 3e-005
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +1 / +3
Query: 19 GETILDEAIAFARSRLEMMLPYVKGPLWAHEVRSSLEIPLPKRGRIYESKYYIHAYETSG 198
GE ILDEA FA S L+ + G A +V +LE+PL +R + E+ + I AY
Sbjct: 675 GENILDEAKVFAISHLKELSEEKIGKDLAEQVNHALELPLHRRTQRLEAVWSIEAYRKKE 854
Query: 199 TLHEKVLQLAKLN 237
++ +L+LA L+
Sbjct: 855 DANQVLLELAILD 893
>gb|DT488492.1|DT488492 WS02536.B21_J10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_J10 3', mRNA sequence
Length = 887
Score = 47.8 bits (98), Expect = 6e-005
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1 / +1
Query: 430 VTLLDDIFDSFATPQECEILTNCIESWDPKGAQDLPGCMKFALEKILDSYQTITNML 600
V ++DDIFD + T + I T + WD A LP MK +L + D ++I+ +
Sbjct: 31 VYIIDDIFDLYGTLNDLSIFTEAVNEWDLTPANQLPESMKISLMALFDITESISTKI 201
>gb|CA824186.1|CA824186 R37G11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 367
Score = 41.4 bits (84), Expect = 0.005
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1 / +1
Query: 316 KLPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSFATPQECEILTN 495
KL FAR + C+ + P S AR+ + T++DD FD + +E L
Sbjct: 166 KLKFARQKEAYCYFSAAATLFAPELSDARMSWAKNGVLTTVVDDFFDVGGSEEELVNLIE 345
Query: 496 CIESWD 513
IE WD
Sbjct: 346 LIERWD 363
>gb|BU892949.1|BU892949 P071E03 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 689
Score = 39.6 bits (80), Expect = 0.018
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1 / +1
Query: 4 HFRTHGETILDEAIAFARSRLEMMLPYVKGPLWA 105
H R HG+ +L+EA+AF S LE + + PL A
Sbjct: 577 HLRVHGDEMLEEALAFTTSHLEFLATHSSSPLRA 678
>gb|DN495725.1|DN495725 P003C04.5pR Populus petioles cDNA library Populus tremula cDNA
clone P003C04 5', mRNA sequence
Length = 896
Score = 38.6 bits (78), Expect = 0.035
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1 / +1
Query: 4 HFRTHGETILDEAIAFARSRLEMMLPYVKGPLWAHEVRSSLEIPLPK 144
H R HGE IL+EA+ FA + L+ + + P ++R +L+ P+ K
Sbjct: 607 HLRVHGEDILEEALTFATTHLKSITTDMCPPPLLVKLRHALDQPIHK 747
>gb|CV262405.1|CV262405 WS02019.B21_H14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02019_H14 3', mRNA sequence
Length = 289
Score = 35.9 bits (72), Expect = 0.23
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1 / -1
Query: 331 RDRIVECFLWILGVYYEPCHSR 396
RD+ CF WI G YYE C +R
Sbjct: 202 RDKF*SCFTWIRGAYYEACLAR 137
>gb|CV263023.1|CV263023 WS02020.B21_C07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_C07 3', mRNA sequence
Length = 887
Score = 35.9 bits (72), Expect = 0.23
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1 / -3
Query: 331 RDRIVECFLWILGVYYEPCHSR 396
RD+ CF WI G YYE C +R
Sbjct: 204 RDKF*SCFTWIRGAYYEACLAR 139
>gb|DT477167.1|DT477167 WS02519.BR_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_C20 5', mRNA sequence
Length = 817
Score = 35.9 bits (72), Expect = 0.23
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +1 / +1
Query: 1 AHFRTHGETILDEAIAFARSRLEMMLPYVKGPLWA 105
AH HGE ILDEA+AF L+ M PL A
Sbjct: 529 AHLAVHGEDILDEALAFTTIHLKSMETSPNCPLTA 633
>gb|DT524375.1|DT524375 WS02042.C21.1_H12 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_H12 3', mRNA sequence
Length = 632
Score = 35.9 bits (72), Expect = 0.23
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1 / -3
Query: 331 RDRIVECFLWILGVYYEPCHSR 396
RD+ CF WI G YYE C +R
Sbjct: 216 RDKF*SCFTWIRGAYYEACLAR 151
>gb|BU830044.1|BU830044 T003C01 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 621
Score = 34.5 bits (69), Expect = 0.61
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1 / +1
Query: 439 LDDIFDSFATPQECEILTNCIESWDP 516
+DDI+D + TP+E E+ T+ IE P
Sbjct: 1 VDDIYDVYGTPEELELFTDAIERSGP 78
>gb|BU888066.1|BU888066 P003C04 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 686
Score = 33.6 bits (67), Expect = 1.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1 / +3
Query: 4 HFRTHGETILDEAIAFARSRLE 69
H R HGE IL+EA+ FA + L+
Sbjct: 591 HLRVHGEDILEEALTFATTHLK 656
>gb|CK092139.1|CK092139 G067P19.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G067P19 3', mRNA sequence
Length = 829
Score = 33.1 bits (66), Expect = 1.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 247 ERWSSAWQVAVPSHAAFHLSHT 182
ER SS WQV +PS +FHL T
Sbjct: 427 ERKSSCWQVQLPSQQSFHLPTT 492
>gb|AJ774222.1|AJ774222 AJ774222 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300014D01F1, mRNA sequence
Length = 400
Score = 32.2 bits (64), Expect = 3.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +1
Query: 608 SRWSIFVMVW*LSNIFSRANFMQPG 534
SRWS+FV+ W F+ F PG
Sbjct: 1 SRWSVFVLAWVCRCFFTSQKFSNPG 75
>gb|CK091834.1|CK091834 F129P16.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F129P16 3', mRNA sequence
Length = 881
Score = 31.8 bits (63), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +3
Query: 247 ERWSSAWQVAVPSHAAFHLSHT 182
ER SS WQV +PS +FHL T
Sbjct: 576 ERKSSCWQV*LPSQQSFHLPTT 641
>gb|CK103868.1|CK103868 I002P31.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I002P31 5', mRNA sequence
Length = 431
Score = 31.8 bits (63), Expect = 4.1
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +1 / +2
Query: 259 HQQELKILTRWWEDMQIGSKLPFARDRIVECFLWILGVY 375
+ LK++ W + + + +D+ CF WI G Y
Sbjct: 164 YNPSLKVI*TWVRNFECRRIFLYVKDKFCSCFTWIRGAY 280
>gb|CV239527.1|CV239527 WS0232.B21_L05 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_L05
3', mRNA sequence
Length = 797
Score = 31.8 bits (63), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +2
Query: 247 ERWSSAWQVAVPSHAAFHLSHT 182
ER SS WQV +PS +FHL T
Sbjct: 425 ERKSSCWQV*LPSQQSFHLPTT 490
>gb|CV260675.1|CV260675 WS02014.B21_L10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_L10 3', mRNA sequence
Length = 555
Score = 31.8 bits (63), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 247 ERWSSAWQVAVPSHAAFHLSHT 182
ER SS WQV +PS +FHL T
Sbjct: 421 ERKSSCWQV*LPSQQSFHLPTT 486
>gb|CX182615.1|CX182615 D03_45-88_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 638
Score = 31.8 bits (63), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 247 ERWSSAWQVAVPSHAAFHLSHT 182
ER SS WQV +PS +FHL T
Sbjct: 442 ERKSSCWQV*LPSQQSFHLPTT 507
>gb|DT486918.1|DT486918 WS02532.B21_E16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_E16 3', mRNA sequence
Length = 852
Score = 31.8 bits (63), Expect = 4.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1 / -3
Query: 352 FLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSFATPQECEILT 492
F+W LGV Y A +L + A + LLDD D C +LT
Sbjct: 244 FVWSLGVVYMYFTVSAFQLLYSLCACINLLDDKTDRNPKTVTCNVLT 104
>gb|DT488910.1|DT488910 WS02537.B21_M13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_M13 3', mRNA sequence
Length = 859
Score = 31.8 bits (63), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 247 ERWSSAWQVAVPSHAAFHLSHT 182
ER SS WQV +PS +FHL T
Sbjct: 424 ERKSSCWQV*LPSQQSFHLPTT 489
>gb|DT501808.1|DT501808 WS01314.BR_E16 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_E16 5', mRNA sequence
Length = 666
Score = 31.8 bits (63), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / -2
Query: 247 ERWSSAWQVAVPSHAAFHLSHT 182
ER SS WQV +PS +FHL T
Sbjct: 545 ERKSSCWQV*LPSQQSFHLPTT 480
>gb|DT504668.1|DT504668 WS01314.B21_E16 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_E16 3', mRNA sequence
Length = 863
Score = 31.8 bits (63), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +2
Query: 247 ERWSSAWQVAVPSHAAFHLSHT 182
ER SS WQV +PS +FHL T
Sbjct: 419 ERKSSCWQV*LPSQQSFHLPTT 484
>gb|CX183621.1|CX183621 D02_45-106_08.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 476
Score = 30.9 bits (61), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3 / +2
Query: 136 AGSPARI*LHAPTMALSRRAASSPDGFSRTRWLH 35
A +P + HAP L+ AA PD R +W+H
Sbjct: 194 ASNPPSVQPHAPQQQLAAAAACLPDK*WRRQWIH 295
>gb|DN494564.1|DN494564 M106B03.5pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M106B03 5', mRNA sequence
Length = 378
Score = 30.9 bits (61), Expect = 7.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3 / -1
Query: 196 HLSHTHGCNTLTRRSC 149
HLSHT C+++T+R+C
Sbjct: 48 HLSHTRKCSSVTKRTC 1
>gb|BI136296.1|BI136296 F066P24Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 114
Score = 28.6 bits (56), Expect(2) = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3 / +1
Query: 214 PSHAAFHLSHTHGCNTLTRRSCP 146
P H A+HLS+T+ N LT S P
Sbjct: 43 PRHMAWHLSYTNFTNMLTWMSGP 111
Score = 16.6 bits (30), Expect(2) = 9.3
Identities = 4/6 (66%), Positives = 4/6 (66%)
Frame = -3 / +2
Query: 244 RWSSAW 227
RW S W
Sbjct: 8 RWQSLW 25
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 328,029,490
Number of Sequences: 369679
Number of extensions: 4609903
Number of successful extensions: 49473
Number of sequences better than 10.0: 46
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7440287368
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)