TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAO3g02.yg.2.1
(344 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP934359.1|BP934359 BP934359 full-length enriched poplar... 71 4e-026
gb|CV246467.1|CV246467 WS01110.B21_J17 PT-P-FL-A-2 Populus ... 70 4e-026
gb|BU885111.1|BU885111 R020G10 Populus root cDNA library Po... 71 8e-026
gb|DT518094.1|DT518094 WS02436.B21_C23 PTxD-ICC-N-A-14 Popu... 70 2e-025
gb|DT470321.1|DT470321 WS01920.C21_I12 PT-DX-N-A-10 Populus... 70 2e-025
gb|CV232647.1|CV232647 WS0198.B21_D24 PT-DX-N-A-10 Populus ... 70 2e-025
gb|CV243219.1|CV243219 WS02518.B21_D22 PT-MB-N-A-15 Populus... 72 4e-025
gb|DT514302.1|DT514302 WS02424.B21_H04 PTxD-ICC-N-A-14 Popu... 72 4e-025
gb|CV230444.1|CV230444 WS01916.B21_J06 PT-DX-N-A-10 Populus... 72 4e-025
gb|CV274944.1|CV274944 WS0174.B21.1_O02 PTxD-NR-A-8 Populus... 66 7e-025
gb|CX176201.1|CX176201 E09_69-21_09.ab1 leaf inoculated wit... 66 7e-025
gb|CX169902.1|CX169902 E05_69-29_09.ab1 leaf inoculated wit... 66 7e-025
gb|AJ771301.1|AJ771301 AJ771301 Populus euphratica leaf 3-6... 70 8e-025
gb|AJ771403.1|AJ771403 AJ771403 Populus euphratica leaf 3-6... 66 4e-024
gb|CN520196.1|CN520196 GQ0108.B3_D07 GQ010 Populus trichoca... 67 6e-024
gb|BP931992.1|BP931992 BP931992 full-length enriched poplar... 65 2e-023
>gb|BP934359.1|BP934359 BP934359 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-064_B03.r 3', mRNA sequence
Length = 661
Score = 70.7 bits (148), Expect(2) = 4e-026
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +1 / -2
Query: 10 ARYLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+ +LFD+ D++VLP HTIH++CLKEME+H +++CP+CS M ++L
Sbjct: 600 SEFLFDTMRDITVLPCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKL 442
Score = 65.2 bits (136), Expect(2) = 4e-026
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +1 / -2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCGA S VQFH++AHKC SYNTR
Sbjct: 399 NKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTR 295
>gb|CV246467.1|CV246467 WS01110.B21_J17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01110_J17 3', mRNA sequence
Length = 718
Score = 70.3 bits (147), Expect(2) = 4e-026
Identities = 24/51 (47%), Positives = 37/51 (72%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LFD+ D++VLP HTIH++CLKEME+H +++CP+CS M ++L
Sbjct: 540 FLFDTMRDITVLPCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKL 388
Score = 66.1 bits (138), Expect(2) = 4e-026
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1 / -2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCGA S VQFH++AHKC SYNTR
Sbjct: 363 MPETYQNKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTR 241
>gb|BU885111.1|BU885111 R020G10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 527
Score = 71.2 bits (149), Expect(2) = 8e-026
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S +DV+VLP HTIH CLKEM +H Q+ACPLCS M E+
Sbjct: 116 FLFESRDDVTVLPCGHTIHKSCLKEMRDHYQYACPLCSKSVCDMSKVWEK 265
Score = 63.4 bits (132), Expect(2) = 8e-026
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +1 / +2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+VQFH++A KC N SYNTR
Sbjct: 311 NKMVWILCNDCGKSSEVQFHVVAQKCLNCKSYNTR 415
>gb|DT518094.1|DT518094 WS02436.B21_C23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_C23 3', mRNA sequence
Length = 951
Score = 69.8 bits (146), Expect(2) = 2e-025
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S DV+VLP HTIH CLKEM +H Q+ACPLCS M E+
Sbjct: 860 FLFESRYDVTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEK 711
Score = 64.3 bits (134), Expect(2) = 2e-025
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +1 / -2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+VQFH++A KC N SYNTR
Sbjct: 665 NKMVWILCNDCGKSSEVQFHVVAQKCMNCKSYNTR 561
>gb|DT470321.1|DT470321 WS01920.C21_I12 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_I12 3', mRNA sequence
Length = 840
Score = 69.8 bits (146), Expect(2) = 2e-025
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +1 / -1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S DV+VLP HTIH CLKEM +H Q+ACPLCS M E+
Sbjct: 618 FLFESRYDVTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEK 469
Score = 64.3 bits (134), Expect(2) = 2e-025
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +1 / -1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+VQFH++A KC N SYNTR
Sbjct: 423 NKMVWILCNDCGKSSEVQFHVVAQKCMNCKSYNTR 319
>gb|CV232647.1|CV232647 WS0198.B21_D24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0198_D24 3', mRNA sequence
Length = 780
Score = 69.8 bits (146), Expect(2) = 2e-025
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +1 / -1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S DV+VLP HTIH CLKEM +H Q+ACPLCS M E+
Sbjct: 618 FLFESRYDVTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEK 469
Score = 64.3 bits (134), Expect(2) = 2e-025
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +1 / -1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+VQFH++A KC N SYNTR
Sbjct: 423 NKMVWILCNDCGKSSEVQFHVVAQKCMNCKSYNTR 319
>gb|CV243219.1|CV243219 WS02518.B21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_D22 3', mRNA sequence
Length = 944
Score = 71.6 bits (150), Expect(2) = 4e-025
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +1 / +1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF++T D+ VLP HTIH++C+KEM++H Q+ACPLCS M ++L
Sbjct: 535 FLFETTKDIIVLPCGHTIHLECVKEMQQHFQYACPLCSKSYCDMSRVWKKL 687
Score = 61.6 bits (128), Expect(2) = 4e-025
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1 / +1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+V FH++AHKC SYNT+
Sbjct: 727 NKMVWILCNDCGETSEVNFHIVAHKCLKCNSYNTK 831
>gb|DT514302.1|DT514302 WS02424.B21_H04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_H04 3', mRNA sequence
Length = 820
Score = 71.6 bits (150), Expect(2) = 4e-025
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF++T D+ VLP HTIH++C+KEM++H Q+ACPLCS M ++L
Sbjct: 702 FLFETTKDIIVLPCGHTIHLECVKEMQQHFQYACPLCSKSYCDMSRVWKKL 550
Score = 61.6 bits (128), Expect(2) = 4e-025
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1 / -2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+V FH++AHKC SYNT+
Sbjct: 510 NKMVWILCNDCGETSEVNFHIVAHKCLKCNSYNTK 406
>gb|CV230444.1|CV230444 WS01916.B21_J06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01916_J06 3', mRNA sequence
Length = 748
Score = 71.6 bits (150), Expect(2) = 4e-025
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +1 / -1
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LF++T D+ VLP HTIH++C+KEM++H Q+ACPLCS M ++L
Sbjct: 676 FLFETTKDIIVLPCGHTIHLECVKEMQQHFQYACPLCSKSYCDMSRVWKKL 524
Score = 61.6 bits (128), Expect(2) = 4e-025
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1 / -1
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+V FH++AHKC SYNT+
Sbjct: 484 NKMVWILCNDCGETSEVNFHIVAHKCLKCNSYNTK 380
>gb|CV274944.1|CV274944 WS0174.B21.1_O02 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_O02 3', mRNA sequence
Length = 940
Score = 66.1 bits (138), Expect(2) = 7e-025
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1 / -2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCGA S VQFH++AHKC SYNTR
Sbjct: 426 MPETYQNKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTR 304
Score = 66.1 bits (138), Expect(2) = 7e-025
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / -2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LFD+ D++VL HTIH++CLKEME+H +++CP+CS M ++L
Sbjct: 603 FLFDTMRDITVLRCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKL 451
>gb|CX176201.1|CX176201 E09_69-21_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 729
Score = 66.1 bits (138), Expect(2) = 7e-025
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1 / -3
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCGA S VQFH++AHKC SYNTR
Sbjct: 376 MPETYQNKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTR 254
Score = 66.1 bits (138), Expect(2) = 7e-025
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / -3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LFD+ D++VL HTIH++CLKEME+H +++CP+CS M ++L
Sbjct: 553 FLFDTMRDITVLRCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKL 401
>gb|CX169902.1|CX169902 E05_69-29_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 710
Score = 66.1 bits (138), Expect(2) = 7e-025
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV ILCNDCGA S VQFH++AHKC SYNTR
Sbjct: 305 MPETYQNKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTR 427
Score = 66.1 bits (138), Expect(2) = 7e-025
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
+LFD+ D++VL HTIH++CLKEME+H +++CP+CS M ++L
Sbjct: 128 FLFDTMRDITVLRCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKL 280
>gb|AJ771301.1|AJ771301 AJ771301 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001500004F10F1, mRNA sequence
Length = 564
Score = 69.8 bits (146), Expect(2) = 8e-025
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +1 / -3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
+LF+S DV+VLP HTIH CLKEM +H Q+ACPLCS M E+
Sbjct: 520 FLFESRYDVTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEK 371
Score = 61.6 bits (128), Expect(2) = 8e-025
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1 / -3
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+ QFH++A KC N SYNTR
Sbjct: 325 NKMVWILCNDCGKSSEAQFHVVAQKCLNCKSYNTR 221
>gb|AJ771403.1|AJ771403 AJ771403 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001500006E11F1, mRNA sequence
Length = 623
Score = 65.7 bits (137), Expect(2) = 4e-024
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +1 / -2
Query: 13 RYLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXER 165
++LF+S DV+V P HTIH CLKEM +H Q+ACPLCS M E+
Sbjct: 523 QFLFESRYDVTV*PCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKV*EK 371
Score = 63.4 bits (132), Expect(2) = 4e-024
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +1 / -2
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCG S+VQFH++A KC N SYNTR
Sbjct: 325 NKMVWILCNDCGKSSEVQFHVVAQKCLNCKSYNTR 221
>gb|CN520196.1|CN520196 GQ0108.B3_D07 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D07 5', mRNA sequence
Length = 700
Score = 67.0 bits (140), Expect(2) = 6e-024
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1 / +2
Query: 22 FDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
FD+ D++VLP HTIH++CLKEME+H +++CP+CS M ++L
Sbjct: 122 FDTMRDITVLPCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKL 268
Score = 61.6 bits (128), Expect(2) = 6e-024
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +1 / +2
Query: 187 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+ ++ +KMV CNDCGA S VQFH++AHKC SYNTR
Sbjct: 293 MPETYQNKMVWXXCNDCGANSHVQFHIVAHKCLRCNSYNTR 415
>gb|BP931992.1|BP931992 BP931992 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_H22.r 3', mRNA sequence
Length = 592
Score = 65.2 bits (136), Expect(2) = 2e-023
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +1 / -3
Query: 205 HKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTR 309
+KMV ILCNDCGA S VQFH++AHKC SYNTR
Sbjct: 407 NKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTR 303
Score = 61.6 bits (128), Expect(2) = 2e-023
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +1 / -3
Query: 37 DVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERL 168
D++VLP HTIH++CLKEME+H +++CP+CS M ++L
Sbjct: 581 DITVLPCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKL 450
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 135,824,086
Number of Sequences: 369679
Number of extensions: 1308051
Number of successful extensions: 87007
Number of sequences better than 1.0e-020: 18
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 3229760105
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)